TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3147935.2.1
(711 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA li... 149 2e-035
gb|AV931472.1|AV931472 AV931472 K. Sato unpublished cDNA li... 149 2e-035
gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. v... 149 2e-035
gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA li... 141 3e-033
gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-a... 141 3e-033
gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA li... 141 3e-033
gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm librar... 141 3e-033
gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgar... 141 3e-033
gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA li... 140 6e-033
gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA li... 140 6e-033
gb|AV930935.1|AV930935 AV930935 K. Sato unpublished cDNA li... 139 2e-032
gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no... 133 7e-031
gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA li... 82 2e-030
gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa... 127 6e-029
gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA li... 125 3e-028
gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. v... 122 2e-027
gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA li... 119 2e-026
gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA li... 119 2e-026
gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA li... 119 2e-026
gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA li... 119 2e-026
gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subs... 117 5e-026
gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA li... 116 1e-025
gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green... 115 3e-025
gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. v... 111 6e-024
gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-a... 106 1e-022
gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA li... 72 9e-022
>gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j21 3', mRNA sequence
Length = 643
Score = 149 bits (319), Expect = 2e-035
Identities = 52/97 (53%), Positives = 71/97 (73%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W +L + WK +LP G V F+N+T PLD WHVLGLG++ + +LE A+VIH
Sbjct: 449 YHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIH 270
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G LKPWLEI +PK+R YW++YL+YD P L++CNI+
Sbjct: 269 YNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECNIN 159
>gb|AV931472.1|AV931472 AV931472 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19o15 3', mRNA sequence
Length = 635
Score = 149 bits (319), Expect = 2e-035
Identities = 52/97 (53%), Positives = 71/97 (73%)
Frame = -3 / -2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W +L + WK +LP G V F+N+T PLD WHVLGLG++ + +LE A+VIH
Sbjct: 634 YHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIH 455
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G LKPWLEI +PK+R YW++YL+YD P L++CNI+
Sbjct: 454 YNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECNIN 344
>gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. vulgare cDNA clone HX12J15
5-PRIME, mRNA sequence
Length = 653
Score = 149 bits (319), Expect = 2e-035
Identities = 52/97 (53%), Positives = 71/97 (73%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W +L + WK +LP G V F+N+T PLD WHVLGLG++ + +LE A+VIH
Sbjct: 462 YHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIH 283
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G LKPWLEI +PK+R YW++YL+YD P L++CNI+
Sbjct: 282 YNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECNIN 172
>gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd23f10, mRNA
sequence
Length = 643
Score = 141 bits (303), Expect = 3e-033
Identities = 47/96 (48%), Positives = 69/96 (71%)
Frame = -3 / -2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FY T PLD WHVLGLG++ SI R E+++A+V H
Sbjct: 609 YHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAH 430
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWLE+++ KYR YW RY+ YD+P+++ CN+
Sbjct: 429 YNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNL 322
>gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018F09f, mRNA sequence
Length = 856
Score = 141 bits (303), Expect = 3e-033
Identities = 47/96 (48%), Positives = 69/96 (71%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FY T PLD WHVLGLG++ SI R E+++A+V H
Sbjct: 73 YHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAH 252
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWLE+++ KYR YW RY+ YD+P+++ CN+
Sbjct: 253 YNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNL 360
>gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 3', mRNA sequence
Length = 634
Score = 141 bits (303), Expect = 3e-033
Identities = 47/96 (48%), Positives = 69/96 (71%)
Frame = -3 / -1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FY T PLD WHVLGLG++ SI R E+++A+V H
Sbjct: 607 YHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAH 428
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWLE+++ KYR YW RY+ YD+P+++ CN+
Sbjct: 427 YNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNL 320
>gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B7 5' similar to 68 kDa
protein, mRNA sequence
Length = 616
Score = 141 bits (303), Expect = 3e-033
Identities = 47/96 (48%), Positives = 69/96 (71%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FY T PLD WHVLGLG++ SI R E+++A+V H
Sbjct: 190 YHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAH 369
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWLE+++ KYR YW RY+ YD+P+++ CN+
Sbjct: 370 YNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNL 477
>gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D065 5-PRIME, mRNA sequence
Length = 786
Score = 141 bits (303), Expect = 3e-033
Identities = 47/96 (48%), Positives = 69/96 (71%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FY T PLD WHVLGLG++ SI R E+++A+V H
Sbjct: 229 YHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAH 408
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWLE+++ KYR YW RY+ YD+P+++ CN+
Sbjct: 409 YNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNL 516
>gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16a24 5', mRNA sequence
Length = 630
Score = 140 bits (301), Expect = 6e-033
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L + K WK +LP G + FYN T PLDH WHVLGLG+D ++ E+E+A+V+H
Sbjct: 200 YHYWQNLNEDRKLWKLGTLPPGLITFYNLTHPLDHTWHVLGLGYDPAVDIAEIENAAVVH 379
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQC 404
Y+G KPWL+++I KY+ YW++Y++ D+ H++ C
Sbjct: 380 YNGNYKPWLDLAISKYKAYWSKYVDVDSSHIRHC 481
>gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16a24 3', mRNA sequence
Length = 565
Score = 140 bits (301), Expect = 6e-033
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = -3 / -1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L + K WK +LP G + FYN T PLDH WHVLGLG+D ++ E+E+A+V+H
Sbjct: 370 YHYWQNLNEDRKLWKLGTLPPGLITFYNLTHPLDHTWHVLGLGYDPAVDIAEIENAAVVH 191
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQC 404
Y+G KPWL+++I KY+ YW++Y++ D+ H++ C
Sbjct: 190 YNGNYKPWLDLAISKYKAYWSKYVDVDSSHIRHC 89
>gb|AV930935.1|AV930935 AV930935 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25o11 3', mRNA sequence
Length = 495
Score = 139 bits (298), Expect = 2e-032
Identities = 48/84 (57%), Positives = 65/84 (77%)
Frame = -3 / -1
Query: 646 WKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISI 467
WK +LP G V F+N+T PLD WHVLGLG++ + +LE A+VIHY+G LKPWLEI +
Sbjct: 477 WKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIHYNGNLKPWLEIGL 298
Query: 466 PKYRGYWNRYLNYDNPHLQQCNIH 395
PK+R YW++YL+YD P L++CNI+
Sbjct: 297 PKFRSYWSKYLDYDQPFLRECNIN 226
>gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_G13 5', mRNA sequence
Length = 523
Score = 133 bits (286), Expect = 7e-031
Identities = 45/93 (48%), Positives = 66/93 (70%)
Frame = -3 / +2
Query: 676 WFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSG 497
W + + WK +LP G + FY T PLD WHVLGLG++ SI R E+++A+V HY+G
Sbjct: 2 WQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAHYNG 181
Query: 496 KLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
+KPWLE+++ KYR YW RY+ YD+P+++ CN+
Sbjct: 182 NMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNL 280
>gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j21 5', mRNA sequence
Length = 612
Score = 81.7 bits (172), Expect(2) = 2e-030
Identities = 26/41 (63%), Positives = 36/41 (87%)
Frame = -3 / +3
Query: 517 SVIHYSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
+VIHY+G LKPWLEI +PK+R YW++YL+YD P L++CNI+
Sbjct: 444 AVIHYNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECNIN 566
Score = 70.3 bits (147), Expect(2) = 2e-030
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESA 518
YH W +L + WK +LP G V F+N+T PLD WHVLGLG++ + +LE A
Sbjct: 275 YHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERA 442
>gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016D06f, mRNA sequence
Length = 490
Score = 127 bits (272), Expect = 6e-029
Identities = 41/97 (42%), Positives = 65/97 (67%)
Frame = -3 / +3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W + + W+ +LP G + FY PLD RWH+LGLG+D I +ESA+V+H
Sbjct: 108 YHYWQEQNADQLLWRTGTLPAGLLTFYGLMEPLDRRWHLLGLGYDVDIDDRLIESAAVVH 287
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G +KPWL+++I +Y+ W R++N+ +PH+++C H
Sbjct: 288 YNGNMKPWLKLAIHRYKSIWERHVNFSHPHIRECMFH 398
>gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a14 3', mRNA sequence
Length = 625
Score = 125 bits (267), Expect = 3e-028
Identities = 41/95 (43%), Positives = 66/95 (69%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W ++ WK +LP G + FY+ T PLD WHVLGLG++ SI +E+ +A+V+H
Sbjct: 530 YHYWQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVH 351
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + ++R W +Y++YD+ ++QCN
Sbjct: 350 FNGNMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCN 246
>gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D07
5-PRIME, mRNA sequence
Length = 529
Score = 122 bits (261), Expect = 2e-027
Identities = 40/94 (42%), Positives = 65/94 (69%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W ++ WK +LP G + FY+ T PLD WHVLGLG++ SI +E+ +A+V+H
Sbjct: 248 YHYWQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVH 427
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQC 404
++G +KPWL+I + ++R W +Y++YD+ ++QC
Sbjct: 428 FNGNMKPWLDIGMNQFRQLWTKYVDYDDSFIRQC 529
>gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o03 5', mRNA sequence
Length = 586
Score = 119 bits (254), Expect = 2e-026
Identities = 39/92 (42%), Positives = 64/92 (69%)
Frame = -3 / +2
Query: 676 WFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSG 497
W ++ WK +LP G + FY+ T PLD WHVLGLG++ SI +E+ +A+V+H++G
Sbjct: 8 WQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNG 187
Query: 496 KLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
+KPWL+I + ++R W +Y++YD+ ++QCN
Sbjct: 188 NMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCN 283
>gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o03 3', mRNA sequence
Length = 527
Score = 119 bits (254), Expect = 2e-026
Identities = 39/92 (42%), Positives = 64/92 (69%)
Frame = -3 / -2
Query: 676 WFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSG 497
W ++ WK +LP G + FY+ T PLD WHVLGLG++ SI +E+ +A+V+H++G
Sbjct: 520 WQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNG 341
Query: 496 KLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
+KPWL+I + ++R W +Y++YD+ ++QCN
Sbjct: 340 NMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCN 245
>gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41d13 5', mRNA sequence
Length = 589
Score = 119 bits (254), Expect = 2e-026
Identities = 39/92 (42%), Positives = 64/92 (69%)
Frame = -3 / +2
Query: 676 WFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSG 497
W ++ WK +LP G + FY+ T PLD WHVLGLG++ SI +E+ +A+V+H++G
Sbjct: 11 WQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNG 190
Query: 496 KLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
+KPWL+I + ++R W +Y++YD+ ++QCN
Sbjct: 191 NMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCN 286
>gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41d13 3', mRNA sequence
Length = 525
Score = 119 bits (254), Expect = 2e-026
Identities = 39/92 (42%), Positives = 64/92 (69%)
Frame = -3 / -1
Query: 676 WFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSG 497
W ++ WK +LP G + FY+ T PLD WHVLGLG++ SI +E+ +A+V+H++G
Sbjct: 519 WQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNG 340
Query: 496 KLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
+KPWL+I + ++R W +Y++YD+ ++QCN
Sbjct: 339 NMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCN 244
>gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078D03F1, mRNA sequence
Length = 447
Score = 117 bits (251), Expect = 5e-026
Identities = 39/73 (53%), Positives = 57/73 (78%)
Frame = -3 / +1
Query: 616 VVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISIPKYRGYWNRY 437
+ FY T PLD WHVLGLG++ SI R E+++A+V HY+G +KPWLE+++ KYR YW RY
Sbjct: 10 MTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWTRY 189
Query: 436 LNYDNPHLQQCNI 398
+ YD+P+++ CN+
Sbjct: 190 IKYDHPYIRGCNL 228
>gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 5', mRNA sequence
Length = 598
Score = 116 bits (248), Expect = 1e-025
Identities = 40/80 (50%), Positives = 56/80 (70%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FY T PLD WHVLGLG++ SI R E+++A+V H
Sbjct: 356 YHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAH 535
Query: 505 YSGKLKPWLEISIPKYRGYW 446
Y+G +KPWLE+++ KYR YW
Sbjct: 536 YNGNMKPWLELAMTKYRPYW 595
>gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025O15f, mRNA sequence
Length = 674
Score = 115 bits (245), Expect = 3e-025
Identities = 39/97 (40%), Positives = 61/97 (62%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W + + W+ +LP G + FY PLD RWH+LGLG+D I +ESA+V+H
Sbjct: 286 YHYWQEQNADQLLWRTGTLPAGLLTFYGLMEPLDRRWHLLGLGYDVDIDDRLIESAAVVH 465
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G +KPWL+++I Y+ W +N+ +PH+++ H
Sbjct: 466 YNGNMKPWLKLAIHPYKSIWGADVNFSHPHIREGVFH 576
>gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. vulgare cDNA clone HM10N01
3-PRIME, mRNA sequence
Length = 535
Score = 111 bits (236), Expect = 6e-024
Identities = 36/78 (46%), Positives = 59/78 (75%)
Frame = -3 / -3
Query: 634 SLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISIPKYR 455
+LP G + FY+ T PLD WHVLGLG++ SI +E+ +A+V+H++G +KPWL+I + ++R
Sbjct: 527 TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFR 348
Query: 454 GYWNRYLNYDNPHLQQCN 401
W +Y++YD+ ++QCN
Sbjct: 347 QLWTKYVDYDDSFIRQCN 294
>gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006H13f, mRNA sequence
Length = 1018
Score = 106 bits (227), Expect = 1e-022
Identities = 42/97 (43%), Positives = 56/97 (57%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W +L + WK +LP G V F+N+T PLD WHVLGLG++ + +LE A+VIH
Sbjct: 442 YHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIH 621
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y G LKPWLE +P + L P L +I+
Sbjct: 622 YXGHLKPWLEXGLPSFEATGQSTLTMIXPXLAGMHIN 732
>gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g13 3', mRNA sequence
Length = 703
Score = 71.6 bits (150), Expect(2) = 9e-022
Identities = 21/49 (42%), Positives = 38/49 (77%)
Frame = -3 / -1
Query: 550 SSIGRDELESASVIHYSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQC 404
+++ D ++ +V+HY+G LKPWL+I + KY+G+W+ Y++Y +P LQ+C
Sbjct: 514 TTVDPDTIKEGAVLHYNGNLKPWLKIGMEKYKGFWDNYVDYSHPLLQRC 368
Score = 51.5 bits (106), Expect(2) = 9e-022
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3 / -1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGH 554
YH W + WK SLP G + FY L+ +WHVLGLG+
Sbjct: 646 YHYWQERNADHTLWKLGSLPPGLLAFYGLVEALNPKWHVLGLGY 515
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 271,978,110
Number of Sequences: 312970
Number of extensions: 3591574
Number of successful extensions: 34123
Number of sequences better than 1.0e-020: 34
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7847091165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)