TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.2
(1172 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU995294.1|BU995294 HM09M17r HM Hordeum vulgare subsp. v... 148 3e-076
gb|BI960587.1|BI960587 HVSMEn0025E05f Hordeum vulgare rachi... 225 4e-064
gb|BM442096.2|BM442096 EBan01_SQ002_C23_R anther, yellow st... 176 1e-054
gb|BI959076.1|BI959076 HVSMEn0018A17f Hordeum vulgare rachi... 202 4e-051
gb|BU981349.1|BU981349 HA23F03r HA Hordeum vulgare subsp. v... 137 9e-048
gb|BI959049.1|BI959049 HVSMEn0017O16f Hordeum vulgare rachi... 135 5e-031
gb|AV915392.1|AV915392 AV915392 K. Sato unpublished cDNA li... 100 7e-028
gb|CA001634.1|CA001634 HS05C08r HS Hordeum vulgare subsp. v... 95 3e-026
gb|CB881433.1|CB881433 HM09M17w HM Hordeum vulgare subsp. v... 49 5e-021
>gb|BU995294.1|BU995294 HM09M17r HM Hordeum vulgare subsp. vulgare cDNA clone HM09M17
5-PRIME, mRNA sequence
Length = 585
Score = 148 bits (317), Expect(3) = 3e-076
Identities = 57/73 (78%), Positives = 65/73 (89%)
Frame = +1 / +1
Query: 409 QDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRY 588
QD++MQ+TVAFNHFG+GLVQRMPRCR+GFFHVVNNDYTHW MYAIGG PTIISQGNR+
Sbjct: 298 QDRMMQVTVAFNHFGKGLVQRMPRCRFGFFHVVNNDYTHWKMYAIGGNRDPTIISQGNRF 477
Query: 589 IAPPNIAAKVITK 627
IAP + AK +TK
Sbjct: 478 IAPDDPNAKEVTK 516
Score = 145 bits (311), Expect(3) = 3e-076
Identities = 57/93 (61%), Positives = 70/93 (75%)
Frame = +1 / +1
Query: 145 NLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQ 324
N+HVH GG++RDS H G RTR+DGDG+S+ S++NVWIDH+SMS C DGLIDVV
Sbjct: 31 NVHVHHSAPHSGGMIRDSKHHYGRRTRSDGDGVSILSSSNVWIDHVSMSTCADGLIDVVS 210
Query: 325 SSTGITISNCHFTNHNDVMLFGASDSWPQDQIM 423
ST IT+SN HFTNH+ VMLFGAS++ Q M
Sbjct: 211 GSTAITVSNSHFTNHDHVMLFGASNAQEQQDRM 309
Score = 128 bits (274), Expect(2) = 2e-055
Identities = 52/73 (71%), Positives = 58/73 (79%)
Frame = -1 / -2
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LV +LA GAM R PWLMMVG+ PPMAY+ QCV*SL TTWKKP+R G+RCTRPLPK
Sbjct: 515 LVTSLALGSSGAMNRFPWLMMVGSRLPPMAYIFQCV*SLFTTWKKPKRQRGMRCTRPLPK 336
Query: 446 WLKATVICMIWSC 408
WLKATV C+I SC
Sbjct: 335 WLKATVTCIILSC 297
Score = 108 bits (231), Expect(2) = 2e-055
Identities = 50/89 (56%), Positives = 57/89 (64%)
Frame = -1 / -2
Query: 410 CGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSP 231
C LAPKSMT WLVKW LE V+ VE TTSMRPS+Q+DM+ WSI TL+ E+ E PSP
Sbjct: 296 CSWALLAPKSMTWSWLVKWLLETVMAVEPLTTSMRPSAQVDMDTWSIHTLLEERMETPSP 117
Query: 230 SALVREPMCVGESRMRPPMVCLTSCTCRL 144
S VR P ESR+ PP TC L
Sbjct: 116 SLRVRRP*WCLESRIMPPECGAEWWTCTL 30
Score = 101 bits (215), Expect(2) = 3e-026
Identities = 44/73 (60%), Positives = 51/73 (69%)
Frame = +3 / +3
Query: 411 GPDHADHRRLQPLRQGPGAADAKVPLGLLPRCQQRLHALAHVRHWRRRRANHHQPGQPLH 590
G D A HRRLQPLRQGP AA A +PL LLPR +QRLHAL VRH R+ R +HHQPG+P+H
Sbjct: 300 GQDDAGHRRLQPLRQGPRAAHAALPLRLLPRREQRLHALEDVRHRRQPRPHHHQPGKPVH 479
Query: 591 STTKHRRQSDHQA 629
+ Q QA
Sbjct: 480 RAR*PQCQGGDQA 518
Score = 37.7 bits (76), Expect(2) = 3e-026
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = +3 / +3
Query: 288 VQLRGRPHRRRAELHGDHHLQLP 356
V LR RPHRRR LH H LQ P
Sbjct: 174 VHLRRRPHRRRQRLHRHHRLQQP 242
Score = 31.8 bits (63), Expect(3) = 3e-076
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1 / +1
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMN 693
A +V + Y +K+WVW ++ D+ MN
Sbjct: 499 AKEVTKREYTPYNEYKDWVWKSQGDVMMN 585
>gb|BI960587.1|BI960587 HVSMEn0025E05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025E05f, mRNA sequence
Length = 663
Score = 225 bits (485), Expect(2) = 4e-064
Identities = 85/126 (67%), Positives = 103/126 (81%)
Frame = +1 / +1
Query: 250 FSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQI 429
F A++VW+DH S+SNC DGLID + ST IT+SN +FT+HN+VML G SDS+ +D+ MQ+
Sbjct: 28 FGASHVWVDHCSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYLKDKAMQV 207
Query: 430 TVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIA 609
T+AFNHFG GL+QRMPRCR G+FHVVNNDYTHW MYAIGG PTI SQGNRY+AP N
Sbjct: 208 TIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPF 387
Query: 610 AKVITK 627
AK +TK
Sbjct: 388 AKEVTK 405
Score = 152 bits (327), Expect(2) = 1e-038
Identities = 72/125 (57%), Positives = 85/125 (68%)
Frame = -1 / -2
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V +LA GA *R PWL+MVG++ PPMAY+SQ V*SL TTWK P HLGI P PKW
Sbjct: 401 VTSLAKGLVGAR*RFPWLLMVGSALPPMAYISQ*V*SLFTTWK*PCLHLGILWMSPSPKW 222
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
LKA V C+ S ESL P+S+TSLW VK L+ V+ VE SMRPS+QL+ E WS QT
Sbjct: 221 LKAMVTCIALSLR*ESL*PRSITSLWWVK*LLDTVMAVEPMMASMRPSAQLEREQWSTQT 42
Query: 263 LVAEK 249
+A K
Sbjct: 41 WLAPK 27
Score = 40.9 bits (83), Expect(2) = 4e-064
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1 / +1
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPS 714
A +V + + WK W W +E D+ +NGA F PS
Sbjct: 388 AKEVTKRVETAQTTWKAWNWRSEGDMLLNGAFFTPS 495
Score = 27.6 bits (54), Expect(2) = 1e-038
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1 / -2
Query: 713 DGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVITLAA 606
DG+K APF + S S Q FH + L +T A
Sbjct: 494 DGVKKAPFSSMSPSDLQFQAFHVVWAVSTLFVTSLA 387
>gb|BM442096.2|BM442096 EBan01_SQ002_C23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_C23 5', mRNA sequence
Length = 356
Score = 176 bits (379), Expect(2) = 1e-054
Identities = 67/74 (90%), Positives = 71/74 (95%)
Frame = +1 / +2
Query: 406 PQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNR 585
P+DQIMQ+TVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGG PTIISQGNR
Sbjct: 5 PKDQIMQVTVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKNPTIISQGNR 184
Query: 586 YIAPPNIAAKVITK 627
YIAPPN+AAK+ITK
Sbjct: 185 YIAPPNLAAKLITK 226
Score = 146 bits (313), Expect(2) = 1e-041
Identities = 60/74 (81%), Positives = 61/74 (82%)
Frame = -1 / -3
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LVI+ AA FGGAM*R PWLMMVG PPMAYMSQ V*SL TTWK P RHLGI CTRPLPK
Sbjct: 225 LVISFAARFGGAM*RFPWLMMVGFLLPPMAYMSQWV*SLFTTWKNPHRHLGILCTRPLPK 46
Query: 446 WLKATVICMIWSCG 405
WLKATV CMIWS G
Sbjct: 45 WLKATVTCMIWSLG 4
Score = 122 bits (260), Expect(2) = 7e-032
Identities = 46/73 (63%), Positives = 58/73 (79%)
Frame = +3 / +1
Query: 411 GPDHADHRRLQPLRQGPGAADAKVPLGLLPRCQQRLHALAHVRHWRRRRANHHQPGQPLH 590
GPDHA HRRLQPLR+ P A +AKVP+G+LPR +QRLH LAHVRH R++ +HHQPG+PLH
Sbjct: 10 GPDHAGHRRLQPLRERPRAENAKVPMGILPRGEQRLHPLAHVRHRRQQEPDHHQPGEPLH 189
Query: 591 STTKHRRQSDHQA 629
+ ++DHQA
Sbjct: 190 CAAEPGGEADHQA 228
Score = 57.4 bits (119), Expect(2) = 1e-054
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +2
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E WKNWVWH++DDL +N A+F SGGA
Sbjct: 236 ASEAEWKNWVWHSQDDLLLNDAVFADSGGA 325
Score = 44.6 bits (91), Expect(2) = 1e-041
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = -1 / -3
Query: 722 APPDGLKMAPFMNRSSSVCHTQFFHTPSSA 633
APP K A F +RSS CHTQFFH+ S A
Sbjct: 324 APPLSAKTASFSSRSSCECHTQFFHSASDA 235
Score = 35.9 bits (72), Expect(2) = 7e-032
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = +3 / +1
Query: 648 VEELGVAHGGRPVHERRHLQSVRR 719
VEELGVA GRP ERR L+ RR
Sbjct: 250 VEELGVALAGRPAAERRRLRRQRR 321
>gb|BI959076.1|BI959076 HVSMEn0018A17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018A17f, mRNA sequence
Length = 632
Score = 202 bits (435), Expect = 4e-051
Identities = 80/135 (59%), Positives = 101/135 (74%)
Frame = +1 / +3
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IF R M+I LSQEL+M+S KTIDGRGA VHIANGA T+Q NVIIH LH+HD + T
Sbjct: 225 IFKRDMVITLSQELIMNSFKTIDGRGANVHIANGACTTIQYVTNVIIHGLHIHDCRPTGN 404
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
++R SP+H G RT ADGD + +F A++VW+DH S+SNC DGLID + ST IT+SN +F
Sbjct: 405 AMVRSSPSHYGWRTIADGDAVXIFGASHVWVDHCSLSNCADGLIDAIMGSTAITVSNNYF 584
Query: 361 TNHNDVMLFGASDSW 405
T+HN+ ML G DS+
Sbjct: 585 THHNEGMLLGHRDSY 629
Score = 112 bits (240), Expect = 3e-024
Identities = 56/111 (50%), Positives = 66/111 (59%)
Frame = -1 / -2
Query: 401 ESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSAL 222
ESL P+S+ SLW VK L+ V+ VE SM PS+QL+ E WS QT +A K SPSA+
Sbjct: 625 ESL*PRSIPSLWWVK*LLDTVMAVEPMMASMSPSAQLEREQWSTQTWLAPKMXTASPSAM 446
Query: 221 VREPMCVGESRMRPPMVCLTSCTCRLWMMTFCASCTVIPAPLAMCTCAPRP 69
VR P +GE R V S R WMMT V+ APLAMCT APRP
Sbjct: 445 VRHP*WLGELRTMALPVGRQSWMWRPWMMTLVTYWMVVQAPLAMCTLAPRP 293
>gb|BU981349.1|BU981349 HA23F03r HA Hordeum vulgare subsp. vulgare cDNA clone HA23F03
5-PRIME, mRNA sequence
Length = 509
Score = 137 bits (294), Expect(3) = 9e-048
Identities = 53/67 (79%), Positives = 59/67 (88%)
Frame = +1 / +3
Query: 427 ITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNI 606
+TVAFNHFG+GLVQRMPRCR+GFFHVVNNDYTHW MYAIGG PTIISQGNR+IAP +
Sbjct: 12 VTVAFNHFGKGLVQRMPRCRFGFFHVVNNDYTHWKMYAIGGNRDPTIISQGNRFIAPDDP 191
Query: 607 AAKVITK 627
AK +TK
Sbjct: 192 NAKEVTK 212
Score = 117 bits (250), Expect(3) = 3e-031
Identities = 48/66 (72%), Positives = 53/66 (80%)
Frame = -1 / -2
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LV +LA GAM R PWLMMVG+ PPMAY+ QCV*SL TTWKKP+R G+RCTRPLPK
Sbjct: 211 LVTSLALGSSGAMNRFPWLMMVGSRLPPMAYIFQCV*SLFTTWKKPKRQRGMRCTRPLPK 32
Query: 446 WLKATV 429
WLKATV
Sbjct: 31 WLKATV 14
Score = 95.5 bits (202), Expect(3) = 8e-024
Identities = 41/67 (61%), Positives = 48/67 (71%)
Frame = +3 / +2
Query: 429 HRRLQPLRQGPGAADAKVPLGLLPRCQQRLHALAHVRHWRRRRANHHQPGQPLHSTTKHR 608
HRRLQPLRQGP AA A +PL LLPR +QRLHAL VRH R+ R +HHQPG+P+H +
Sbjct: 14 HRRLQPLRQGPRAAHAALPLRLLPRREQRLHALEDVRHRRQPRPHHHQPGKPVHRAR*PQ 193
Query: 609 RQSDHQA 629
Q QA
Sbjct: 194 CQGGDQA 214
Score = 48.7 bits (100), Expect(3) = 9e-048
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1 / +3
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGG 720
A +V + Y +K+WVW ++ D+ MNGA FN SGG
Sbjct: 195 AKEVTKREYTPYNEYKDWVWKSQGDVMMNGAFFNQSGG 308
Score = 43.2 bits (88), Expect(3) = 9e-048
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1 / +3
Query: 745 EWVKPKPGTYVTRLTRFSGTLSCCTGKPC* 834
+++ K G YV +LT+F+GTL C GKPC*
Sbjct: 336 DFIPAKHGKYVGQLTQFAGTLECRVGKPC* 425
Score = 29.0 bits (57), Expect(3) = 3e-031
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1 / -2
Query: 719 PPDGLKMAPFMNRSSSVCHTQFFHT 645
PPD LK APF+ S HTQ ++
Sbjct: 307 PPDWLKKAPFIMTSPCDFHTQSLYS 233
Score = 27.2 bits (53), Expect(3) = 3e-031
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1 / -2
Query: 830 HGLPVQQDSVPEKRVSLVT*VPGLGLTHSLV 738
HGLP + SVP VS T +P L S++
Sbjct: 421 HGLPTRHSSVPANCVSCPTYLPCLAGMKSML 329
Score = 26.7 bits (52), Expect(3) = 8e-024
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3 / +2
Query: 735 RHQRVGQAQARNLRYKAHPLLRHTVLLHGQAVL 833
R + QAR +R AH + RH + QAVL
Sbjct: 326 RQHGLHPCQARQVRRAAHAVRRHARMPRRQAVL 424
Score = 26.3 bits (51), Expect(3) = 8e-024
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3 / +2
Query: 618 DHQALRGRRRVEELGVAHGGRPVHERRHLQSVRRRPQA 731
D + +RV+ LGV G ER LQ VRR +A
Sbjct: 206 DQAGVHALQRVQGLGVEVAGGRHDERGLLQPVRRPERA 319
>gb|BI959049.1|BI959049 HVSMEn0017O16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017O16f, mRNA sequence
Length = 684
Score = 135 bits (289), Expect = 5e-031
Identities = 55/106 (51%), Positives = 71/106 (66%)
Frame = +1 / +3
Query: 73 RGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLF 252
RGA VHIANGA IT+Q NVIIH LH+HD + T ++R SP+H G RT A GD +S+F
Sbjct: 18 RGANVHIANGACITIQYVTNVIIHGLHIHDCRPTGNAMVRSSPSHYGWRTIAGGDAVSIF 197
Query: 253 SATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFG 390
A++VW+DH S+SN GL+D + ST IT N +F N+V G
Sbjct: 198 XASHVWVDHCSLSN*AXGLMDAIMGSTVITGVNSYFAQRNEVERLG 335
>gb|AV915392.1|AV915392 AV915392 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14d11 5', mRNA sequence
Length = 554
Score = 100 bits (214), Expect(2) = 7e-028
Identities = 39/52 (75%), Positives = 42/52 (80%)
Frame = +1 / +3
Query: 472 MPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
MPRCR G+FHVVNNDYTHW MYAIGG PTI SQGNRY+AP N AK +TK
Sbjct: 21 MPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPFAKEVTK 176
Score = 43.7 bits (89), Expect(2) = 7e-028
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1 / +3
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
A +V + + WK W W +E D+ +NGA F PSG
Sbjct: 159 AKEVTKRVETAQTTWKAWNWRSEGDMLLNGAFFTPSG 269
>gb|CA001634.1|CA001634 HS05C08r HS Hordeum vulgare subsp. vulgare cDNA clone HS05C08
5-PRIME, mRNA sequence
Length = 521
Score = 95.5 bits (202), Expect(2) = 3e-026
Identities = 37/50 (74%), Positives = 40/50 (80%)
Frame = +1 / +1
Query: 478 RCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
RCR G+FHVVNNDYTHW MYAIGG PTI SQGNRY+AP N AK +TK
Sbjct: 13 RCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPFAKEVTK 162
Score = 43.7 bits (89), Expect(2) = 3e-026
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1 / +1
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
A +V + + WK W W +E D+ +NGA F PSG
Sbjct: 145 AKEVTKRVETAQTTWKAWNWRSEGDMLLNGAFFTPSG 255
>gb|CB881433.1|CB881433 HM09M17w HM Hordeum vulgare subsp. vulgare cDNA clone HM09M17
3-PRIME, mRNA sequence
Length = 490
Score = 48.7 bits (100), Expect(3) = 5e-021
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1 / -1
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGG 720
A +V + Y +K+WVW ++ D+ MNGA FN SGG
Sbjct: 418 AKEVTKREYTPYNEYKDWVWKSQGDVMMNGAFFNQSGG 305
Score = 46.9 bits (96), Expect(3) = 5e-021
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +1 / -1
Query: 538 AIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
AIGG PTIISQGNR+IAP + AK +TK
Sbjct: 490 AIGGNPDPTIISQGNRFIAPDDPNAKEVTK 401
Score = 43.2 bits (88), Expect(3) = 5e-021
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1 / -1
Query: 745 EWVKPKPGTYVTRLTRFSGTLSCCTGKPC* 834
+++ K G YV +LT+F+GTL C GKPC*
Sbjct: 277 DFIPAKHGKYVGQLTQFAGTLECRVGKPC* 188
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 562,795,756
Number of Sequences: 312970
Number of extensions: 11085127
Number of successful extensions: 119577
Number of sequences better than 1.0e-020: 12
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 14083489153
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)