TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115097.2.1
(987 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 131 3e-064
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 131 2e-056
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 128 1e-055
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 127 2e-055
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 115 2e-054
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 104 4e-054
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 134 2e-053
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 120 1e-052
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 182 2e-050
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 118 2e-050
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 114 6e-049
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 166 4e-048
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 135 1e-047
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 131 1e-046
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 131 1e-046
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 131 5e-046
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 166 2e-045
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 129 3e-045
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 131 3e-045
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 131 3e-045
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 97 9e-045
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 99 2e-044
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 101 4e-043
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 101 4e-043
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 104 7e-043
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 100 8e-043
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 127 3e-042
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 127 1e-041
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 167 9e-041
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 101 1e-040
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 127 1e-039
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 129 1e-038
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 103 6e-038
gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. v... 101 2e-037
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 109 3e-037
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 115 4e-037
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 111 1e-036
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 108 3e-036
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 150 1e-035
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 150 1e-035
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 104 1e-033
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 138 8e-033
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 104 5e-031
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 82 1e-028
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 75 2e-028
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 121 6e-027
gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots... 75 7e-027
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 104 1e-026
gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedl... 99 8e-026
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 96 1e-024
gb|AL505514.1|AL505514 AL505514 Hordeum vulgare Barke roots... 72 1e-024
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 113 2e-024
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 67 2e-024
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 72 4e-024
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 111 5e-024
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 110 2e-023
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 64 3e-023
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 68 4e-023
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 108 6e-023
gb|BQ760589.1|BQ760589 EBro03_SQ001_N06_R root, 3 week, wat... 108 6e-023
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 107 1e-022
gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedl... 103 2e-022
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 104 8e-022
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 100 1e-021
gb|BQ468086.1|BQ468086 HR01O13r HR Hordeum vulgare subsp. v... 103 2e-021
gb|BQ660413.1|BQ660413 HI02G15u HI Hordeum vulgare subsp. v... 100 9e-021
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 131 bits (281), Expect(3) = 3e-064
Identities = 48/75 (64%), Positives = 61/75 (81%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PAFL IAQ +AGIVP+SYRRV C K+GGIR+TI G+ YFN+V +TNV
Sbjct: 453 WCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNV 632
Query: 525 GGAGDIAAVSVKGSK 481
GAGD +V +KG++
Sbjct: 633 XGAGDARSVFIKGTR 677
Score = 115 bits (245), Expect(3) = 3e-064
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = -1 / +3
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE+RC
Sbjct: 177 GGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRC 356
Query: 786 VDSPSGCKPDAAALVVT 736
++ S C+P + + T
Sbjct: 357 DNAGSSCRPGSIMVTAT 407
Score = 96.8 bits (205), Expect(2) = 3e-039
Identities = 43/73 (58%), Positives = 48/73 (65%)
Frame = +2 / -3
Query: 485 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNA 664
+P +T SPAP TLV T LK +P+MV RMPP F H TL *E GTMPA CA+WR A
Sbjct: 673 VPLMNTERASPAPXTLVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKA 494
Query: 665 GMLRSKCSRGGLH 703
G SK RGGLH
Sbjct: 493 GSAMSKWGRGGLH 455
Score = 85.8 bits (181), Expect(2) = 3e-039
Identities = 38/69 (55%), Positives = 43/69 (62%)
Frame = +2 / -3
Query: 761 GLHPLGLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*K 940
G H L + R+S*H P A PS NS VL+A V PYP YPHAP +VP+ S PP*K
Sbjct: 382 GRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAPPIVPEASPPP*K 203
Query: 941 VAWAGFHGP 967
VAWA H P
Sbjct: 202 VAWALCHPP 176
Score = 38.2 bits (77), Expect(3) = 3e-064
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1 / +3
Query: 480 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSD 379
R W M RNWG WQ+ L + L+F+V + D
Sbjct: 675 RTGWQAMSRNWGMNWQSNTFLGRQCLSFKVTSRD 776
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 131 bits (280), Expect(4) = 2e-056
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G+ YFN+V +TNV
Sbjct: 258 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNV 437
Query: 525 GGAGDIAAVSVKGS 484
GAGD+ +VS+KGS
Sbjct: 438 AGAGDVQSVSIKGS 479
Score = 91.3 bits (193), Expect(4) = 2e-056
Identities = 34/58 (58%), Positives = 39/58 (67%)
Frame = -1 / +3
Query: 951 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRCVDS 778
A TFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE++C S
Sbjct: 3 ARGTFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKCQGS 176
Score = 30.9 bits (61), Expect(4) = 2e-056
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1 / +3
Query: 471 WTEMKRNWGQVWQT 430
W M RNWGQ WQ+
Sbjct: 489 WQAMSRNWGQNWQS 530
Score = 23.1 bits (44), Expect(4) = 2e-056
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 192 SITITATNLCPP 227
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 128 bits (275), Expect(3) = 1e-055
Identities = 47/74 (63%), Positives = 60/74 (81%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR H D++ PA+LQI +AGIVP+SYRRV C K+GGIR+TI G+ YFN+V +TNV
Sbjct: 391 WCNPPRAHCDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNV 570
Query: 525 GGAGDIAAVSVKGS 484
GAGD+ +VS+KGS
Sbjct: 571 AGAGDVQSVSIKGS 612
Score = 104 bits (221), Expect(3) = 1e-055
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = -1 / +1
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE++C
Sbjct: 121 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 300
Query: 786 VDS 778
S
Sbjct: 301 QGS 309
Score = 87.2 bits (184), Expect(2) = 2e-022
Identities = 40/72 (55%), Positives = 46/72 (63%)
Frame = +2 / -1
Query: 488 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAG 667
P +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 608 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 429
Query: 668 MLRSKCSRGGLH 703
S+C+RGGLH
Sbjct: 428 SAMSQCARGGLH 393
Score = 41.4 bits (84), Expect(2) = 2e-022
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +2 / -1
Query: 893 PHAPAVVPDPSRPP*KVAWAGFHGP 967
PHAP +VPD S PP*KVA A H P
Sbjct: 194 PHAPPIVPDASPPP*KVACAVCHEP 120
Score = 23.1 bits (44), Expect(3) = 1e-055
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +1
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 325 SITITATNLCPP 360
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 127 bits (273), Expect(3) = 2e-055
Identities = 45/73 (61%), Positives = 60/73 (82%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G+ YFN+V +TNV
Sbjct: 414 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNV 593
Query: 525 GGAGDIAAVSVKG 487
GAGD+ +VS++G
Sbjct: 594 AGAGDVQSVSIRG 632
Score = 104 bits (221), Expect(3) = 2e-055
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = -1 / +3
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE++C
Sbjct: 144 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 323
Query: 786 VDS 778
S
Sbjct: 324 QGS 332
Score = 84.0 bits (177), Expect(2) = 3e-023
Identities = 40/72 (55%), Positives = 45/72 (62%)
Frame = +2 / -1
Query: 488 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAG 667
P +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 631 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 452
Query: 668 MLRSKCSRGGLH 703
SK +RGGLH
Sbjct: 451 SAMSKWARGGLH 416
Score = 47.3 bits (97), Expect(2) = 3e-023
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +2 / -1
Query: 893 PHAPAVVPDPSRPP*KVAWAGFHGP 967
PHAP +VPD S PP*KVAWA H P
Sbjct: 217 PHAPPIVPDASPPP*KVAWAVCHEP 143
Score = 23.1 bits (44), Expect(3) = 2e-055
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 348 SITITATNLCPP 383
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 115 bits (245), Expect(3) = 2e-054
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = -1 / +3
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE+RC
Sbjct: 177 GGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRC 356
Query: 786 VDSPSGCKPDAAALVVT 736
++ S C+P + + T
Sbjct: 357 DNAGSSCRPGSIMVTAT 407
Score = 114 bits (244), Expect(3) = 2e-054
Identities = 42/65 (64%), Positives = 51/65 (78%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR H D++ PAFL IAQ +AGIVP+SYRRV C K+GGIR+TI G+ Y N+ +TNV
Sbjct: 453 WCNPPRPHLDMAEPAFLHIAQYRAGIVPLSYRRVPCVKKGGIRFTINGHSYLNLGLVTNV 632
Query: 525 GGAGD 511
GAGD
Sbjct: 633 AGAGD 647
Score = 87.2 bits (184), Expect(2) = 2e-036
Identities = 39/64 (60%), Positives = 42/64 (65%)
Frame = +2 / -1
Query: 512 SPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSR 691
SPAP TLV K +P+MV RMPP F H TL *E GTMPA CA+WR AG SK R
Sbjct: 646 SPAPATLVTSPRFK*EWPLMVNRMPPFFTHGTLL*ERGTMPARYCAMWRKAGSAMSKWGR 467
Query: 692 GGLH 703
GGLH
Sbjct: 466 GGLH 455
Score = 85.8 bits (181), Expect(2) = 2e-036
Identities = 38/69 (55%), Positives = 43/69 (62%)
Frame = +2 / -1
Query: 761 GLHPLGLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*K 940
G H L + R+S*H P A PS NS VL+A V PYP YPHAP +VP+ S PP*K
Sbjct: 382 GRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAPPIVPEASPPP*K 203
Query: 941 VAWAGFHGP 967
VAWA H P
Sbjct: 202 VAWALCHPP 176
Score = 22.1 bits (42), Expect(3) = 2e-054
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -1 / +1
Query: 462 MKRNWGQVWQT 430
M R WG WQ+
Sbjct: 691 MSRTWGLTWQS 723
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 104 bits (221), Expect(4) = 4e-054
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = -1 / +1
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE++C
Sbjct: 46 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 225
Query: 786 VDS 778
S
Sbjct: 226 QGS 234
Score = 99.1 bits (210), Expect(4) = 4e-054
Identities = 38/70 (54%), Positives = 50/70 (71%)
Frame = -1 / +3
Query: 639 KAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSKRVKWTEM 460
+AGIVP+SYRRV C K+GG+R+TI G+ YFN+V +TNV GAGD+ +V +KGSK
Sbjct: 384 RAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVXIKGSKLRVGRPC 563
Query: 459 KRNWGQVWQT 430
GQ WQ+
Sbjct: 564 SATGGQNWQS 593
Score = 42.3 bits (86), Expect(4) = 4e-054
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1 / +2
Query: 705 WCKPPREHFDLSMPAFLQI 649
WC PPR HFD++ PA+LQI
Sbjct: 317 WCNPPRAHFDMAEPAYLQI 373
Score = 23.1 bits (44), Expect(4) = 4e-054
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +1
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 250 SITITATNLCPP 285
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 134 bits (288), Expect(3) = 2e-053
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PAFL IAQ +AGIVP+SYRRV C K+GGIR+TI G+ YFN+V +TNV
Sbjct: 235 WCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNV 414
Query: 525 GGAGDIAAVSVKGSK 481
GAGD +VS+KG++
Sbjct: 415 AGAGDARSVSIKGTR 459
Score = 99.6 bits (211), Expect(2) = 7e-033
Identities = 44/73 (60%), Positives = 48/73 (65%)
Frame = +2 / -3
Query: 485 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNA 664
+P DT SPAP TLV T LK +P+MV RMPP F H TL *E GTMPA CA+WR A
Sbjct: 455 VPLMDTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKA 276
Query: 665 GMLRSKCSRGGLH 703
G SK RGGLH
Sbjct: 275 GSAMSKWGRGGLH 237
Score = 83.5 bits (176), Expect(3) = 2e-053
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = -1 / +1
Query: 915 GTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRCVDSPSGCKPDAAALVVT 736
GT GACGY + + GYG T A+ST LF DG ACG CYE+RC ++ S C+P + + T
Sbjct: 10 GTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPGSIMVTAT 189
Score = 61.6 bits (128), Expect(2) = 7e-033
Identities = 27/52 (51%), Positives = 31/52 (59%)
Frame = +2 / -3
Query: 761 GLHPLGLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYPHAPAVVP 916
G H L + R+S*H P A PS NS VL+A V PYP YPHAP +VP
Sbjct: 164 GRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAPPIVP 9
Score = 29.9 bits (59), Expect(3) = 2e-053
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1 / +1
Query: 480 RVKWTEMKRNWGQVWQT 430
R W M RNWG WQ+
Sbjct: 457 RTGWQAMSRNWGMNWQS 507
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 120 bits (257), Expect(3) = 1e-052
Identities = 43/66 (65%), Positives = 54/66 (81%)
Frame = -1 / +2
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+LQI +AGIVP+SYRRV C K+GGIR+TI G+ YFN+V +TNV
Sbjct: 392 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNV 571
Query: 525 GGAGDI 508
GAGD+
Sbjct: 572 AGAGDV 589
Score = 102 bits (217), Expect(3) = 1e-052
Identities = 37/63 (58%), Positives = 44/63 (69%)
Frame = -1 / +2
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG + SGT GACGY + + GYG T A+ST LF DG ACG CYE++C
Sbjct: 122 GSWQTAHATFYGGGEASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 301
Query: 786 VDS 778
S
Sbjct: 302 QGS 310
Score = 84.5 bits (178), Expect(2) = 1e-021
Identities = 39/64 (60%), Positives = 43/64 (67%)
Frame = +2 / -3
Query: 512 SPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSR 691
SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG SKC+R
Sbjct: 585 SPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKCAR 406
Query: 692 GGLH 703
GGLH
Sbjct: 405 GGLH 394
Score = 41.4 bits (84), Expect(2) = 1e-021
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +2 / -3
Query: 893 PHAPAVVPDPSRPP*KVAWAGFHGP 967
PHAP +VPD S PP*KVA A H P
Sbjct: 195 PHAPPIVPDASPPP*KVACAVCHEP 121
Score = 23.1 bits (44), Expect(3) = 1e-052
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +2
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 326 SITITATNLCPP 361
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 182 bits (393), Expect(3) = 2e-050
Identities = 68/133 (51%), Positives = 91/133 (68%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD+S P F +IA +AGIVP+SYRRVAC K+GGIR+TI G+ YFN+V +TNV
Sbjct: 189 WCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNV 368
Query: 525 GGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLP 346
GG GD+ AVSVK ++ W + RNWGQ WQ+ L + L+FRV + + S + +P
Sbjct: 369 GGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVP 548
Query: 345 ADWKFGVTYQASK 307
W FG T+ ++
Sbjct: 549 RGWSFGQTFSGAQ 587
Score = 111 bits (237), Expect = 6e-024
Identities = 53/105 (50%), Positives = 63/105 (60%)
Frame = +2 / -1
Query: 389 ITRNVSDSQVRSSPVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYLFPV 568
+TRN S+ +C CPQLR + H + TDTA SP PPTLV T LKY +P+
Sbjct: 505 VTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTLVTSTRLKYEWPL 326
Query: 569 MVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSRGGLH 703
+V MPP F HATLR*E GTMPA A+ G SK +RGGLH
Sbjct: 325 IVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLH 191
Score = 103 bits (220), Expect = 1e-021
Identities = 61/133 (45%), Positives = 69/133 (51%)
Frame = +1 / -3
Query: 307 LGCLVRDAELPVSGENVP*GGLAVVAGHHPERQRLAGEVLPGLPHLPPVALHLRPLDALA 486
LG AE P + + V VA H ER+ L E LP LPPVA P
Sbjct: 587 LGAAEGLAE*PAARDGVVGDHGLAVACRHAEREALPVEQRVALPVLPPVA*ERLPRRRAR 408
Query: 487 PLHRHRRDVASAAHIGDRHHVEVLVPGDGVPDAALLRARHPAVGDRHDAGLLLRDLEERG 666
L HR VA A H+GD+H VEV V D PDAALL ARHPAVGD +AG + RD E G
Sbjct: 407 RLDGHRVHVAGATHVGDQHQVEVRVAIDREPDAALLLARHPAVGDGDNAGAVERDALEDG 228
Query: 667 HAEVEVLPRWLAP 705
VEV +AP
Sbjct: 227 LGHVEVGAGRVAP 189
Score = 33.6 bits (67), Expect(3) = 2e-050
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1 / +3
Query: 834 LFGDGTACGGCYEVRC 787
LF +G +CG C+EVRC
Sbjct: 27 LFNNGLSCGACFEVRC 74
Score = 22.1 bits (42), Expect(3) = 2e-050
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1 / +3
Query: 744 VVTVTDLCPP 715
VVT T+ CPP
Sbjct: 129 VVTATNFCPP 158
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 118 bits (253), Expect(2) = 2e-050
Identities = 42/75 (56%), Positives = 59/75 (78%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR+HFD+S PA+ IA +AGIVP++Y+RV C + GG+R+TI GN YF +VT+ NV
Sbjct: 384 WCNPPRQHFDMSQPAWETIAIYQAGIVPVNYKRVPCQRSGGMRFTINGNDYFELVTVANV 563
Query: 525 GGAGDIAAVSVKGSK 481
GG+G ++ + +KGSK
Sbjct: 564 GGSGVVSQMWIKGSK 608
Score = 101 bits (215), Expect(2) = 2e-050
Identities = 38/88 (43%), Positives = 51/88 (57%)
Frame = -1 / +3
Query: 978 KFTAGPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCY 799
K + W PA ATFYGG D S T GACGY + GYGV + A+ST LF +G +CG C+
Sbjct: 90 KASIAQWMPAFATFYGGSDASDTMGGACGYGNLYNAGYGVNSAALSTALFNNGASCGMCF 269
Query: 798 EVRCVDSPSGCKPDAAALVVTVTDLCPP 715
+ C S + ++ +T T+ CPP
Sbjct: 270 TITCDASKTQSCKQGTSITITATNFCPP 353
Score = 72.1 bits (151), Expect(2) = 6e-023
Identities = 34/65 (52%), Positives = 39/65 (60%)
Frame = +2 / -2
Query: 512 SPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSR 691
+P PPT VT K FP+MV MPP TL * GTMPA+ A+ +AG SKC R
Sbjct: 577 TPLPPTFATVTSSK*SFPLMVNLMPPLLWQGTLL*LTGTMPAW*MAMVSHAGCDMSKCCR 398
Query: 692 GGLHH 706
GGLHH
Sbjct: 397 GGLHH 383
Score = 55.6 bits (115), Expect(2) = 6e-023
Identities = 25/53 (47%), Positives = 27/53 (50%)
Frame = +2 / -2
Query: 803 HPPQAVPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFH 961
H P P VL A TPYP YPHAP +V + S PP* VA AG H
Sbjct: 265 HMPHDAPLLKRAVLNAAELTPYPALYKFPYPHAPPIVSEASLPP*NVANAGIH 107
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 114 bits (243), Expect(3) = 6e-049
Identities = 40/69 (57%), Positives = 50/69 (72%)
Frame = -1 / +1
Query: 981 GKFTAGPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGC 802
G +T G W+ AHATFYGG D SGT GACGY + +QGYGV A+ST LF +G +CG C
Sbjct: 160 GVYTGGDWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNEGQSCGAC 339
Query: 801 YEVRCVDSP 775
+E+RCV+ P
Sbjct: 340 FEIRCVNQP 366
Score = 90.4 bits (191), Expect(3) = 6e-049
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTI 568
WC PPR HFDL+MP FL +AQ +AGIVP+ YRRVAC K GG+R+TI
Sbjct: 463 WCNPPRPHFDLAMPMFLHMAQYRAGIVPVCYRRVACRKSGGVRFTI 600
Score = 78.0 bits (164), Expect(2) = 6e-029
Identities = 37/69 (53%), Positives = 41/69 (59%)
Frame = +2 / -2
Query: 776 GLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAG 955
G THR S H PQ PS NS VL+A + TPYP YPHAP +VP+ S PP*KVA A
Sbjct: 365 GWFTHRISKHAPQLCPSLNSAVLSAALFTPYPWLYRFPYPHAPPMVPEASLPP*KVACAL 186
Query: 956 FHGPAVNLP 982
P V P
Sbjct: 185 CQSPPVYTP 159
Score = 69.8 bits (146), Expect(2) = 6e-029
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +2 / -2
Query: 569 MVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSRGGLH 703
MV R PP F HAT R*+ GTMPA A+WRN GM RSK RGGLH
Sbjct: 599 MVNRTPPDFRHATRR*QTGTMPARYWAMWRNMGMARSKWGRGGLH 465
Score = 28.6 bits (56), Expect(3) = 6e-049
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1 / +1
Query: 768 CKPDAAALVVTVTDLCPP 715
C P ++VVT T+ CPP
Sbjct: 379 CLPGKPSIVVTATNFCPP 432
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 166 bits (356), Expect(3) = 4e-048
Identities = 62/105 (59%), Positives = 78/105 (74%)
Frame = -1 / +2
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD+S P F +IA +AGIVP+SYRRVAC K+GGIR+TI G+ YFN+V +TNV
Sbjct: 185 WCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNV 364
Query: 525 GGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCESLTFRV 391
GG GD+ AVSVK ++ W + RNWGQ WQ+ L + L+FRV
Sbjct: 365 GGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRV 499
Score = 111 bits (237), Expect = 6e-024
Identities = 53/105 (50%), Positives = 63/105 (60%)
Frame = +2 / -1
Query: 389 ITRNVSDSQVRSSPVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYLFPV 568
+TRN S+ +C CPQLR + H + TDTA SP PPTLV T LKY +P+
Sbjct: 501 VTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTLVTSTRLKYEWPL 322
Query: 569 MVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSRGGLH 703
+V MPP F HATLR*E GTMPA A+ G SK +RGGLH
Sbjct: 321 IVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLH 187
Score = 101 bits (216), Expect = 5e-021
Identities = 55/109 (50%), Positives = 61/109 (55%)
Frame = +1 / -3
Query: 379 VAGHHPERQRLAGEVLPGLPHLPPVALHLRPLDALAPLHRHRRDVASAAHIGDRHHVEVL 558
VA H ER+ L E LP LPPVA P L HR VA A H+GD+H VEV
Sbjct: 511 VACRHAEREALPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVR 332
Query: 559 VPGDGVPDAALLRARHPAVGDRHDAGLLLRDLEERGHAEVEVLPRWLAP 705
V D PDAALL ARHPAVGD +AG + RD E G VEV +AP
Sbjct: 331 VAIDREPDAALLLARHPAVGDGDNAGAVERDALEDGLGHVEVGAGRVAP 185
Score = 42.3 bits (86), Expect(3) = 4e-048
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -1 / +2
Query: 855 TVAVSTVLFGDGTACGGCYEVRC 787
T A+ST LF +G +CG C+EVRC
Sbjct: 2 TAALSTALFNNGLSCGACFEVRC 70
Score = 22.1 bits (42), Expect(3) = 4e-048
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1 / +2
Query: 744 VVTVTDLCPP 715
VVT T+ CPP
Sbjct: 125 VVTATNFCPP 154
>gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_C23 5', mRNA sequence
Length = 594
Score = 135 bits (289), Expect(2) = 1e-047
Identities = 49/109 (44%), Positives = 71/109 (65%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+ +I + GI+P+ Y+RV C K+GG+R+ + G+ YFN+V ++NV
Sbjct: 253 WCNPPRPHFDMAQPAWEKIGVYRGGIIPVMYQRVPCVKRGGVRFKMNGHDYFNLVLVSNV 432
Query: 525 GGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSD 379
AG I ++ VK S W M RNWG W + +LT + L FR+ SD
Sbjct: 433 AAAGSIQSMDVKCSDSEDWMPMARNWGANWHSLANLTGKMLAFRLTNSD 579
Score = 75.3 bits (158), Expect(2) = 1e-047
Identities = 27/48 (56%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 930 GRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G D S T GACGY + ++GYG +T A+STVLF DG ACG CY++ C
Sbjct: 1 GADASDTMGGACGYGNLFSEGYGTRTAALSTVLFNDGAACGQCYKIAC 144
Score = 73.5 bits (154), Expect(2) = 5e-025
Identities = 40/108 (37%), Positives = 51/108 (47%)
Frame = +2 / -2
Query: 380 SLVITRNVSDSQVRSSPVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYL 559
SL+++ S VR + C PQLR I + + T + PA TL+ T LK
Sbjct: 578 SLLVSLKASILPVRLASECQLAPQLRAIGIQSSESEHLTSMDWIEPAAATLLTSTRLK*S 399
Query: 560 FPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSRGGLH 703
P ++ PP F H TL G MP I+ AG SKC RGGLH
Sbjct: 398 *PFILNLTPPRFTHGTLWYMTGMMPPL*TPIFSQAGCAMSKCGRGGLH 255
Score = 61.1 bits (127), Expect(2) = 5e-025
Identities = 29/66 (43%), Positives = 36/66 (54%)
Frame = +2 / -2
Query: 728 SVTVTTSAAASGLHPLGLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYPHAPA 907
+VTVT + L +H *H PQA PS N+TVL A V PYP + YPHAP
Sbjct: 203 AVTVTVTPGLQNNGSARLRSHAIL*HCPQAAPSLNNTVLRAAVRVPYPSEKRLPYPHAPP 24
Query: 908 VVPDPS 925
+V + S
Sbjct: 23 IVSEAS 6
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 131 bits (280), Expect(3) = 1e-046
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = -1 / -3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G+ YFN+V +TNV
Sbjct: 652 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNV 473
Query: 525 GGAGDIAAVSVKGS 484
GAGD+ +VS+KGS
Sbjct: 472 AGAGDVQSVSIKGS 431
Score = 71.2 bits (149), Expect(3) = 1e-046
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = -1 / -3
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 307
W M RNWGQ WQ+ DL +SL+FRV SD R TS + PA W FG T++ +
Sbjct: 421 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQ 257
Score = 23.1 bits (44), Expect(3) = 1e-046
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / -3
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 718 SITITATNLCPP 683
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 131 bits (280), Expect(3) = 1e-046
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G+ YFN+V +TNV
Sbjct: 115 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNV 294
Query: 525 GGAGDIAAVSVKGS 484
GAGD+ +VS+KGS
Sbjct: 295 AGAGDVQSVSIKGS 336
Score = 71.2 bits (149), Expect(3) = 1e-046
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = -1 / +1
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 307
W M RNWGQ WQ+ DL +SL+FRV SD R TS + PA W FG T++ +
Sbjct: 346 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQ 510
Score = 23.1 bits (44), Expect(3) = 1e-046
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +1
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 49 SITITATNLCPP 84
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 131 bits (280), Expect(4) = 5e-046
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G+ YFN+V +TNV
Sbjct: 196 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNV 375
Query: 525 GGAGDIAAVSVKGS 484
GAGD+ +VS+KGS
Sbjct: 376 AGAGDVQSVSIKGS 417
Score = 84.0 bits (177), Expect(2) = 3e-021
Identities = 40/72 (55%), Positives = 45/72 (62%)
Frame = +2 / -3
Query: 488 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAG 667
P +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 413 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 234
Query: 668 MLRSKCSRGGLH 703
SK +RGGLH
Sbjct: 233 SAMSKWARGGLH 198
Score = 50.6 bits (104), Expect(4) = 5e-046
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = -1 / +2
Query: 870 GYGVQTVAVSTVLFGDGTACGGCYEVRCVDS 778
G G T A+ST LF DG ACG CYE++C S
Sbjct: 23 GCGTNTAALSTALFNDGAACGSCYELKCQGS 115
Score = 38.2 bits (77), Expect(2) = 3e-021
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2 / -2
Query: 779 LSTHRTS*HPPQAVPSPNSTVLTATVCTPYP 871
L H +S*H P A PS NS VL+A V P P
Sbjct: 114 LPWHLSS*HDPHAAPSLNSAVLSAAVFVPQP 22
Score = 36.3 bits (73), Expect(4) = 5e-046
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1 / +1
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLP 346
W M WG WQ+ DL +SL+F+V + R T + P
Sbjct: 427 WQAMFPQWGHNWQSNADLDGQSLSFQVTLTYRRDVTINNAAP 552
Score = 23.1 bits (44), Expect(4) = 5e-046
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +2
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 131 SITITATNLCPP 166
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 166 bits (356), Expect(3) = 2e-045
Identities = 62/105 (59%), Positives = 78/105 (74%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD+S P F +IA +AGIVP+SYRRVAC K+GGIR+TI G+ YFN+V +TNV
Sbjct: 168 WCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNV 347
Query: 525 GGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCESLTFRV 391
GG GD+ AVSVK ++ W + RNWGQ WQ+ L + L+FRV
Sbjct: 348 GGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRV 482
Score = 111 bits (237), Expect = 6e-024
Identities = 53/105 (50%), Positives = 63/105 (60%)
Frame = +2 / -3
Query: 389 ITRNVSDSQVRSSPVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYLFPV 568
+TRN S+ +C CPQLR + H + TDTA SP PPTLV T LKY +P+
Sbjct: 484 VTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTLVTSTRLKYEWPL 305
Query: 569 MVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSRGGLH 703
+V MPP F HATLR*E GTMPA A+ G SK +RGGLH
Sbjct: 304 IVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLH 170
Score = 33.6 bits (67), Expect(3) = 2e-045
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1 / +3
Query: 834 LFGDGTACGGCYEVRC 787
LF +G +CG C+EVRC
Sbjct: 6 LFNNGLSCGACFEVRC 53
Score = 22.1 bits (42), Expect(3) = 2e-045
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1 / +3
Query: 744 VVTVTDLCPP 715
VVT T+ CPP
Sbjct: 108 VVTATNFCPP 137
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 129 bits (276), Expect(5) = 3e-045
Identities = 46/73 (63%), Positives = 60/73 (82%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G+ YFN+V +TNV
Sbjct: 178 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNV 357
Query: 525 GGAGDIAAVSVKG 487
GAGD+ +VS+KG
Sbjct: 358 AGAGDVQSVSIKG 396
Score = 54.7 bits (113), Expect(5) = 3e-045
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = -1 / +1
Query: 870 GYGVQTVAVSTVLFGDGTACGGCYEVRCVDS 778
GYG T A+ST LF DG ACG CYE++C S
Sbjct: 4 GYGTNTAALSTALFNDGAACGSCYELKCQGS 96
Score = 25.8 bits (50), Expect(5) = 3e-045
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1 / +2
Query: 462 MKRNWGQVWQTGEDL 418
+ RNWGQ WQ+ L
Sbjct: 416 LSRNWGQNWQSNGGL 460
Score = 23.1 bits (44), Expect(5) = 3e-045
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = -1 / +1
Query: 417 TCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQ 316
T +F + +TS P+ W FG T+Q
Sbjct: 463 TARGCSFGSPLAKAEPSTSTTSAPSRWSFGQTFQ 564
Score = 23.1 bits (44), Expect(5) = 3e-045
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +1
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 112 SITITATNLCPP 147
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 131 bits (280), Expect(2) = 3e-045
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = -1 / +2
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G+ YFN+V +TNV
Sbjct: 53 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNV 232
Query: 525 GGAGDIAAVSVKGS 484
GAGD+ +VS+KGS
Sbjct: 233 AGAGDVQSVSIKGS 274
Score = 71.2 bits (149), Expect(2) = 3e-045
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = -1 / +2
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 307
W M RNWGQ WQ+ DL +SL+FRV SD R TS + PA W FG T++ +
Sbjct: 284 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQ 448
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 131 bits (280), Expect(2) = 3e-045
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G+ YFN+V +TNV
Sbjct: 39 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNV 218
Query: 525 GGAGDIAAVSVKGS 484
GAGD+ +VS+KGS
Sbjct: 219 AGAGDVQSVSIKGS 260
Score = 71.2 bits (149), Expect(2) = 3e-045
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = -1 / +3
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 307
W M RNWGQ WQ+ DL +SL+FRV SD R TS + PA W FG T++ +
Sbjct: 270 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQ 434
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 96.8 bits (205), Expect(4) = 9e-045
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = -1 / +3
Query: 960 WKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRCVD 781
W+ AHATFYGG D SGT GAC Y++ + GYG T A+ST LF D ACG CYE++C
Sbjct: 180 WQTAHATFYGGGDASGTMGGACCYRNLYSTGYGTNTAALSTALFNDSAACGSCYELKCQG 359
Query: 780 S 778
S
Sbjct: 360 S 362
Score = 59.3 bits (123), Expect(4) = 9e-045
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = -1 / +2
Query: 624 PISYRRVACAKQGGIRYTITGNKYFNMVTITNVGGAGDI 508
P SYRR C K+GG+R+TI G+ YFN+ TNV GAG++
Sbjct: 527 PFSYRRGPCVKKGGMRFTINGHSYFNLGLETNVAGAGNM 643
Score = 53.8 bits (111), Expect(4) = 9e-045
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPI 619
WC PPR HFD++ PA+LQI +AGIVP+
Sbjct: 445 WCNPPRAHFDMAEPAYLQIGIYRAGIVPV 531
Score = 27.2 bits (53), Expect(4) = 9e-045
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1 / +3
Query: 750 ALVVTVTDLCPPKDQWCKPPR 688
++ +TVT+LCPP + + PR
Sbjct: 378 SITITVTNLCPPNLRAAQRPR 440
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 98.7 bits (209), Expect(4) = 2e-044
Identities = 36/73 (49%), Positives = 53/73 (72%)
Frame = -1 / +1
Query: 702 CKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVG 523
C PP HF L + AF +IA KAG++PI YRRV C ++GG+R++++G +F V I+NVG
Sbjct: 250 CNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVG 429
Query: 522 GAGDIAAVSVKGS 484
GAGD+ + +KG+
Sbjct: 430 GAGDVRSRKIKGT 468
Score = 75.8 bits (159), Expect(4) = 2e-044
Identities = 29/61 (47%), Positives = 36/61 (59%)
Frame = -1 / +1
Query: 924 DGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRCVDSPSGCKPDAAAL 745
D GACG+ D GYG+ TV +ST LF G ACGGCYEV+CV+ C P + +
Sbjct: 10 DPGDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPGTSIV 189
Query: 744 V 742
V
Sbjct: 190 V 192
Score = 65.7 bits (137), Expect(2) = 1e-023
Identities = 30/62 (48%), Positives = 34/62 (54%)
Frame = +2 / -1
Query: 719 GHRSVTVTTSAAASGLHPLGLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYPH 898
G + + T+ G L STH TS* PPQA P NS VL+ TV PYPC S PH
Sbjct: 215 GGQKLVAVTTMEVPGRQYLRSSTHLTS*QPPQAAPRSNSAVLSPTVAIPYPCFPRSPNPH 36
Query: 899 AP 904
AP
Sbjct: 35 AP 30
Score = 64.3 bits (134), Expect(2) = 1e-023
Identities = 33/63 (52%), Positives = 37/63 (58%)
Frame = +2 / -1
Query: 512 SPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSR 691
SPAPPTL+I T+ K LFP R PP H T R +G PAF AI+ NA M R K
Sbjct: 440 SPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMGRRKWWL 261
Query: 692 GGL 700
GGL
Sbjct: 260 GGL 252
Score = 37.7 bits (76), Expect(4) = 2e-044
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1 / +1
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLP 346
W M RNWGQ+W DLT + ++F + D T+ + +P
Sbjct: 478 WLYMGRNWGQIWVIIFDLTGQPVSFGLTLGDGATKTNNYRVP 603
Score = 23.5 bits (45), Expect(4) = 2e-044
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1 / +1
Query: 750 ALVVTVTDLCPP 715
++VVT T+ CPP
Sbjct: 181 SIVVTATNFCPP 216
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 101 bits (216), Expect(4) = 4e-043
Identities = 37/73 (50%), Positives = 54/73 (73%)
Frame = -1 / +3
Query: 702 CKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVG 523
C PP HF L + AF +IA KAG++PI YRRV C ++GG+R++++G +F V I+NVG
Sbjct: 132 CNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVG 311
Query: 522 GAGDIAAVSVKGS 484
GAGD+ +V +KG+
Sbjct: 312 GAGDVRSVKIKGT 350
Score = 68.9 bits (144), Expect(4) = 4e-043
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = -1 / +3
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 319
W +M RNWGQ+W DLT + ++F + +SD T+++V+P DW+FG TY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
Score = 37.3 bits (75), Expect(4) = 4e-043
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1 / +3
Query: 813 CGGCYEVRCVDSPSGCKPDAAALV 742
CGGCYEV+CV+ C P + +V
Sbjct: 3 CGGCYEVKCVEDLKYCLPGTSIVV 74
Score = 23.5 bits (45), Expect(4) = 4e-043
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 750 ALVVTVTDLCPP 715
++VVT T+ CPP
Sbjct: 63 SIVVTATNFCPP 98
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 101 bits (216), Expect(4) = 4e-043
Identities = 37/73 (50%), Positives = 54/73 (73%)
Frame = -1 / +3
Query: 702 CKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVG 523
C PP HF L + AF +IA KAG++PI YRRV C ++GG+R++++G +F V I+NVG
Sbjct: 132 CNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVG 311
Query: 522 GAGDIAAVSVKGS 484
GAGD+ +V +KG+
Sbjct: 312 GAGDVRSVKIKGT 350
Score = 68.9 bits (144), Expect(4) = 4e-043
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = -1 / +3
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 319
W +M RNWGQ+W DLT + ++F + +SD T+++V+P DW+FG TY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
Score = 37.3 bits (75), Expect(4) = 4e-043
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1 / +3
Query: 813 CGGCYEVRCVDSPSGCKPDAAALV 742
CGGCYEV+CV+ C P + +V
Sbjct: 3 CGGCYEVKCVEDLKYCLPGTSIVV 74
Score = 23.5 bits (45), Expect(4) = 4e-043
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 750 ALVVTVTDLCPP 715
++VVT T+ CPP
Sbjct: 63 SIVVTATNFCPP 98
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 104 bits (221), Expect(2) = 7e-043
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = -1 / +2
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE++C
Sbjct: 170 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 349
Query: 786 VDS 778
S
Sbjct: 350 QGS 358
Score = 90.4 bits (191), Expect(2) = 7e-043
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = -1 / +2
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKY 553
WC PPR HFD++ PA+LQI +AGIVP+SYR+V C K+GG+R+TI G+ Y
Sbjct: 440 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRKVPCVKKGGMRFTINGHSY 592
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 100 bits (212), Expect(3) = 8e-043
Identities = 37/63 (58%), Positives = 43/63 (68%)
Frame = -1 / +2
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CY ++C
Sbjct: 8 GGWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGWCYXLKC 187
Query: 786 VDS 778
S
Sbjct: 188 QGS 196
Score = 89.5 bits (189), Expect(3) = 8e-043
Identities = 31/52 (59%), Positives = 41/52 (78%)
Frame = -1 / +2
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYF 550
WC PPR HF ++ PA+LQI +AGIVP+SYRRV C K+GG+R+T+ G+ YF
Sbjct: 278 WCNPPRAHFXMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTMNGHAYF 433
Score = 23.1 bits (44), Expect(3) = 8e-043
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +2
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 212 SITITATNLCPP 247
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 127 bits (273), Expect(2) = 3e-042
Identities = 47/72 (65%), Positives = 58/72 (80%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PP+ HFDL+ P F +IAQ +AG+VP+ YRRVAC K GGIR+TITG+ YFN+V ITNV
Sbjct: 22 WCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVLITNV 201
Query: 525 GGAGDIAAVSVK 490
GAGD+ +V VK
Sbjct: 202 AGAGDLMSVYVK 237
Score = 86.8 bits (183), Expect(2) = 9e-024
Identities = 42/72 (58%), Positives = 45/72 (62%)
Frame = +2 / -1
Query: 491 FTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGM 670
FT T SPAP TLV+ T LK +PVMV RMPP HATL GT PA + AI N G
Sbjct: 236 FTYTDIRSPAPATLVMSTRLK*EWPVMVNRMPPVLTHATLLYWTGTTPARAWAILVNTGS 57
Query: 671 LRSKCSRGGLHH 706
RSKC GGLHH
Sbjct: 56 ARSKCDCGGLHH 21
Score = 64.3 bits (134), Expect(2) = 3e-042
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = -1 / +1
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 307
W M NWG WQ G L + L+FRV TSD R TS +V P W FG T+ S+
Sbjct: 253 WLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTFAGSQ 417
Score = 43.7 bits (89), Expect(2) = 9e-024
Identities = 21/44 (47%), Positives = 24/44 (54%)
Frame = +3 / -2
Query: 330 RTSSQRGERAMRWPCGGRWSSPGTSATRR*GPPRSATLAPSCAS 461
R SS+R R W G RW PG +A R* RSA+ PSC S
Sbjct: 394 RRSSRRARRCWTWWYGRRWW*PGRTAAGR*AWRRSASWRPSCGS 263
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 127 bits (273), Expect(2) = 1e-041
Identities = 47/72 (65%), Positives = 58/72 (80%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PP+ HFDL+ P F +IAQ +AG+VP+ YRRVAC K GGIR+TITG+ YFN+V ITNV
Sbjct: 70 WCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVLITNV 249
Query: 525 GGAGDIAAVSVK 490
GAGD+ +V VK
Sbjct: 250 AGAGDLMSVYVK 285
Score = 86.8 bits (183), Expect(2) = 9e-024
Identities = 42/72 (58%), Positives = 45/72 (62%)
Frame = +2 / -3
Query: 491 FTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGM 670
FT T SPAP TLV+ T LK +PVMV RMPP HATL GT PA + AI N G
Sbjct: 284 FTYTDIRSPAPATLVMSTRLK*EWPVMVNRMPPVLTHATLLYWTGTTPARAWAILVNTGS 105
Query: 671 LRSKCSRGGLHH 706
RSKC GGLHH
Sbjct: 104 ARSKCDCGGLHH 69
Score = 62.5 bits (130), Expect(2) = 1e-041
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = -1 / +1
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 319
W M NWG WQ G L + L+FRV TSD R TS +V P W FG T+
Sbjct: 301 WLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTF 453
Score = 43.7 bits (89), Expect(2) = 9e-024
Identities = 21/44 (47%), Positives = 24/44 (54%)
Frame = +3 / -1
Query: 330 RTSSQRGERAMRWPCGGRWSSPGTSATRR*GPPRSATLAPSCAS 461
R SS+R R W G RW PG +A R* RSA+ PSC S
Sbjct: 442 RRSSRRARRCWTWWYGRRWW*PGRTAAGR*AWRRSASWRPSCGS 311
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 167 bits (359), Expect = 9e-041
Identities = 63/115 (54%), Positives = 81/115 (70%)
Frame = -1 / +2
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD+S P F +IA +AGIVP+SYRRVAC K+GGIR+TI G+ YFN+V +TNV
Sbjct: 62 WCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNV 241
Query: 525 GGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATS 361
GG GD+ AVSVK ++ W + RNWGQ WQ+ L + L+FRV + + S
Sbjct: 242 GGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVS 406
Score = 111 bits (237), Expect = 6e-024
Identities = 53/105 (50%), Positives = 63/105 (60%)
Frame = +2 / -2
Query: 389 ITRNVSDSQVRSSPVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYLFPV 568
+TRN S+ +C CPQLR + H + TDTA SP PPTLV T LKY +P+
Sbjct: 378 VTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTLVTSTRLKYEWPL 199
Query: 569 MVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSRGGLH 703
+V MPP F HATLR*E GTMPA A+ G SK +RGGLH
Sbjct: 198 IVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLH 64
Score = 101 bits (216), Expect = 5e-021
Identities = 55/109 (50%), Positives = 61/109 (55%)
Frame = +1 / -1
Query: 379 VAGHHPERQRLAGEVLPGLPHLPPVALHLRPLDALAPLHRHRRDVASAAHIGDRHHVEVL 558
VA H ER+ L E LP LPPVA P L HR VA A H+GD+H VEV
Sbjct: 388 VACRHAEREALPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVR 209
Query: 559 VPGDGVPDAALLRARHPAVGDRHDAGLLLRDLEERGHAEVEVLPRWLAP 705
V D PDAALL ARHPAVGD +AG + RD E G VEV +AP
Sbjct: 208 VAIDREPDAALLLARHPAVGDGDNAGAVERDALEDGLGHVEVGAGRVAP 62
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 101 bits (216), Expect(4) = 1e-040
Identities = 37/73 (50%), Positives = 54/73 (73%)
Frame = -1 / +3
Query: 702 CKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVG 523
C PP HF L + AF +IA KAG++PI YRRV C ++GG+R++++G +F V I+NVG
Sbjct: 132 CNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVG 311
Query: 522 GAGDIAAVSVKGS 484
GAGD+ +V +KG+
Sbjct: 312 GAGDVRSVKIKGT 350
Score = 68.9 bits (144), Expect(4) = 1e-040
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = -1 / +3
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 319
W +M RNWGQ+W DLT + ++F + +SD T+++V+P DW+FG TY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
Score = 28.6 bits (56), Expect(4) = 1e-040
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1 / +3
Query: 813 CGGCYEVRCVDSPSGCKPDAAALV 742
CGG Y V+CV+ C P + +V
Sbjct: 3 CGG*YAVKCVEDLKYCLPGTSIVV 74
Score = 23.5 bits (45), Expect(4) = 1e-040
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 750 ALVVTVTDLCPP 715
++VVT T+ CPP
Sbjct: 63 SIVVTATNFCPP 98
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 127 bits (273), Expect(2) = 1e-039
Identities = 47/74 (63%), Positives = 60/74 (81%)
Frame = -1 / +1
Query: 702 CKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVG 523
C PPR HFD++ PAFL I Q +AGIVP+SYRRV C K+GGIR+TI G+ YFN+V +TNV
Sbjct: 1 CNPPRPHFDMAEPAFLHIGQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVA 180
Query: 522 GAGDIAAVSVKGSK 481
GAGD +VS+KG++
Sbjct: 181 GAGDARSVSIKGTR 222
Score = 93.6 bits (198), Expect(2) = 3e-023
Identities = 42/72 (58%), Positives = 46/72 (63%)
Frame = +2 / -3
Query: 485 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNA 664
+P DT SPAP TLV T LK +P+MV RMPP F H TL *E GTMPA C +WR A
Sbjct: 218 VPLMDTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCPMWRKA 39
Query: 665 GMLRSKCSRGGL 700
G SK RGGL
Sbjct: 38 GSAMSKWGRGGL 3
Score = 55.6 bits (115), Expect(2) = 1e-039
Identities = 24/54 (44%), Positives = 30/54 (55%)
Frame = -1 / +1
Query: 480 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 319
R W M RNWG WQ+ L + L+FRV +SD R TS PA W+F T+
Sbjct: 220 RTGWQAMSRNWGMNWQSITFLDGQCLSFRVTSSDGRTVTSNAAGPAGWQFRQTF 381
Score = 35.0 bits (70), Expect(2) = 3e-023
Identities = 24/60 (40%), Positives = 28/60 (46%)
Frame = +1 / -2
Query: 307 LGCLVRDAELPVSGENVP*GGLAVVAGHHPERQRLAGEVLPGLPHLPPVALHLRPLDALA 486
LG L A+LP G G + VAG PE + LA + LP PVA H P A A
Sbjct: 393 LGALEGLAKLPAGGPGGVAGDGSAVAGGDPEGEALAVQEGDALPVHAPVAGHGLPAGARA 214
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 129 bits (276), Expect(4) = 1e-038
Identities = 47/74 (63%), Positives = 60/74 (81%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G+ YFN+V TNV
Sbjct: 153 WCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLXTNV 332
Query: 525 GGAGDIAAVSVKGS 484
GAGD+ +VS+KGS
Sbjct: 333 AGAGDVQSVSIKGS 374
Score = 32.7 bits (65), Expect(4) = 1e-038
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1 / +3
Query: 825 DGTACGGCYEVRCVDS 778
DG ACG CYE++C S
Sbjct: 24 DGAACGSCYELKCQGS 71
Score = 30.9 bits (61), Expect(4) = 1e-038
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1 / +3
Query: 471 WTEMKRNWGQVWQT 430
W M RNWGQ WQ+
Sbjct: 384 WQAMSRNWGQNWQS 425
Score = 23.1 bits (44), Expect(4) = 1e-038
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 87 SITITATNLCPP 122
>gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_H20 5', mRNA sequence
Length = 592
Score = 103 bits (219), Expect(2) = 6e-038
Identities = 41/90 (45%), Positives = 48/90 (53%)
Frame = -1 / +1
Query: 984 HGKFTAGPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGG 805
HG W A ATFYGG DGSGT GACGY + GYG+ A+ST LF DG CG
Sbjct: 130 HGVDAQYYWTSATATFYGGADGSGTMGGACGYGNLYGSGYGINNAALSTALFNDGAMCGA 309
Query: 804 CYEVRCVDSPSGCKPDAAALVVTVTDLCPP 715
CY + C S + V+ T+ CPP
Sbjct: 310 CYIIYCDTGRSKMCRPGTQITVSATNFCPP 399
Score = 74.8 bits (157), Expect(2) = 6e-038
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTIT 565
WC PPR HFD+S PA+ IA +AGIVP+ Y+RV+C K+ GIR+ I+
Sbjct: 430 WCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKRDGIRFGIS 570
>gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. vulgare cDNA clone HV05O14
5-PRIME, mRNA sequence
Length = 443
Score = 101 bits (216), Expect(2) = 2e-037
Identities = 40/85 (47%), Positives = 49/85 (57%)
Frame = -1 / +2
Query: 972 TAGPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEV 793
T W ATFYGG + +GT GACGY + A GYG T A+ST LF DG ACG CY+V
Sbjct: 5 TRADWMRGSATFYGGSNAAGTMGGACGYGNLYATGYGTNTAALSTSLFNDGAACGECYQV 184
Query: 792 RCVDSPSGCKPDAAALVVTVTDLCP 718
+C S + +T T+LCP
Sbjct: 185 QCDRGSSPNCKPGVTVTITATNLCP 259
Score = 74.8 bits (157), Expect(2) = 2e-037
Identities = 24/49 (48%), Positives = 38/49 (77%)
Frame = -1 / +2
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGN 559
WC PPR+H D++ PA+ +I +AGIVP+ ++RV C++ GG+R+TI G+
Sbjct: 293 WCNPPRKHLDMAQPAWERIGIYRAGIVPVLFQRVPCSRSGGVRFTINGH 439
>gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F10
3-PRIME, mRNA sequence
Length = 532
Score = 109 bits (233), Expect(2) = 3e-037
Identities = 40/74 (54%), Positives = 55/74 (74%)
Frame = -1 / -3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNV 526
WC PPR HFD+S PA+ IA +AGIVP+ Y+RV+C K+ GIR+ I+G YF +V +TNV
Sbjct: 482 WCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKRDGIRFGISGRDYFELVVVTNV 303
Query: 525 GGAGDIAAVSVKGS 484
GG+G + + +KGS
Sbjct: 302 GGSGVVVQMWIKGS 261
Score = 66.1 bits (138), Expect(2) = 3e-037
Identities = 26/57 (45%), Positives = 34/57 (59%)
Frame = -1 / -3
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASKNF 301
W M RNWG WQ+ L + L+FRV D R+AT+ V P++W FG TY + NF
Sbjct: 251 WLAMSRNWGANWQSNAYLNGQRLSFRVRLDDGREATASDVAPSNWWFGATYSSWINF 81
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 115 bits (245), Expect(2) = 4e-037
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = -1 / +3
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE+RC
Sbjct: 156 GGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRC 335
Query: 786 VDSPSGCKPDAAALVVT 736
++ S C+P + + T
Sbjct: 336 DNAGSSCRPGSIMVTAT 386
Score = 85.8 bits (181), Expect(2) = 7e-025
Identities = 38/69 (55%), Positives = 43/69 (62%)
Frame = +2 / -3
Query: 761 GLHPLGLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*K 940
G H L + R+S*H P A PS NS VL+A V PYP YPHAP +VP+ S PP*K
Sbjct: 361 GRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAPPIVPEASPPP*K 182
Query: 941 VAWAGFHGP 967
VAWA H P
Sbjct: 181 VAWALCHPP 155
Score = 60.2 bits (125), Expect(2) = 4e-037
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPIS 616
WC PPR HFD++ PAFL IAQ +AGIVP+S
Sbjct: 432 WCNPPRPHFDMAEPAFLHIAQYRAGIVPVS 521
Score = 48.3 bits (99), Expect(2) = 7e-025
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +2 / -3
Query: 617 EIGTMPAFSCAIWRNAGMLRSKCSRGGLH 703
E GTMPA CA+WR AG SK RGGLH
Sbjct: 520 ETGTMPARYCAMWRKAGSAMSKWGRGGLH 434
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 111 bits (237), Expect(2) = 1e-036
Identities = 41/77 (53%), Positives = 51/77 (66%)
Frame = -1 / +3
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE+RC
Sbjct: 177 GGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRC 356
Query: 786 VDSPSGCKPDAAALVVT 736
++ S C+ + + T
Sbjct: 357 DNAGSSCRAGSIMVTAT 407
Score = 84.0 bits (177), Expect(2) = 8e-023
Identities = 37/67 (55%), Positives = 42/67 (62%)
Frame = +2 / -2
Query: 767 HPLGLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVA 946
H L + R+S*H P A PS NS VL+A V PYP YPHAP +VP+ S PP*KVA
Sbjct: 376 HELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAPPIVPEASPPP*KVA 197
Query: 947 WAGFHGP 967
WA H P
Sbjct: 196 WALCHPP 176
Score = 62.0 bits (129), Expect(2) = 1e-036
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRR 607
WC PPR HFD++ PAFL IAQ +AGIVP YR+
Sbjct: 453 WCNPPRPHFDMAEPAFLHIAQYRAGIVPCFYRK 551
Score = 43.2 bits (88), Expect(2) = 8e-023
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = +2 / -2
Query: 623 GTMPAFSCAIWRNAGMLRSKCSRGGLHH 706
GTMPA CA+ R AG SK RGGLHH
Sbjct: 535 GTMPARYCAM*RKAGSAMSKWGRGGLHH 452
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 108 bits (230), Expect(2) = 3e-036
Identities = 41/65 (63%), Positives = 54/65 (83%)
Frame = -1 / +2
Query: 675 LSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVS 496
++ PAFL IAQ +AGIVP+SYRRV C K+GGIR+TI G+ YFN+V +TNV GAGD +VS
Sbjct: 2 MAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVS 181
Query: 495 VKGSK 481
+KG++
Sbjct: 182 IKGTR 196
Score = 84.5 bits (178), Expect(2) = 2e-021
Identities = 37/61 (60%), Positives = 41/61 (67%)
Frame = +2 / -3
Query: 485 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNA 664
+P DT SPAP TLV T LK +P+MV RMPP F H TL *E GTMPA CA+WR A
Sbjct: 192 VPLMDTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKA 13
Query: 665 G 667
G
Sbjct: 12 G 10
Score = 64.3 bits (134), Expect(2) = 3e-036
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = -1 / +2
Query: 480 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 307
R W M RNWG WQ+ L + L+FRV +SD R TS PA W+FG T++ ++
Sbjct: 194 RTGWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQ 367
Score = 38.2 bits (77), Expect(2) = 2e-021
Identities = 26/60 (43%), Positives = 28/60 (46%)
Frame = +1 / -2
Query: 307 LGCLVRDAELPVSGENVP*GGLAVVAGHHPERQRLAGEVLPGLPHLPPVALHLRPLDALA 486
LG L AELP G G A VAG PE + LA + LP PVA H P A A
Sbjct: 367 LGALEGLAELPAGGRGGVAGDGAAVAGGDPEGEALAVQEGVALPVHAPVAGHGLPAGARA 188
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 150 bits (322), Expect = 1e-035
Identities = 58/118 (49%), Positives = 80/118 (67%)
Frame = -1 / +2
Query: 660 FLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 481
F +IA +AGIVP+SYRRVAC K+GGIR+TI G+ YFN+V +TNVGG GD+ AVSVK ++
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 480 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 307
W + RNWGQ WQ+ L + L+FRV + + S + +P W FG T+ ++
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQ 355
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 150 bits (322), Expect = 1e-035
Identities = 58/118 (49%), Positives = 80/118 (67%)
Frame = -1 / +2
Query: 660 FLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 481
F +IA +AGIVP+SYRRVAC K+GGIR+TI G+ YFN+V +TNVGG GD+ AVSVK ++
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 480 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 307
W + RNWGQ WQ+ L + L+FRV + + S + +P W FG T+ ++
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQ 355
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 104 bits (221), Expect(3) = 1e-033
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = -1 / +1
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE++C
Sbjct: 151 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 330
Query: 786 VDS 778
S
Sbjct: 331 QGS 339
Score = 52.8 bits (109), Expect(3) = 1e-033
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVP 622
WC PPR HFD++ PA+LQI +AGIVP
Sbjct: 421 WCNPPRAHFDMAKPAYLQIGIYRAGIVP 504
Score = 24.9 bits (48), Expect(3) = 1e-033
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1 / +2
Query: 624 PISYRRVACAK 592
P+SYRRV C K
Sbjct: 503 PVSYRRVPCVK 535
>gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E088 5-PRIME, mRNA sequence
Length = 542
Score = 138 bits (297), Expect(2) = 8e-033
Identities = 54/123 (43%), Positives = 76/123 (61%)
Frame = -1 / +2
Query: 714 KDQWCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTI 535
K WC PPR HFD++ PA+ +I + GI+PI Y+RV C K+GG+R+TI+G+ YF +V
Sbjct: 8 KGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLVLP 187
Query: 534 TNVGGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWH 355
TNV AG + A+ V+GSK W M NWG W + L + L+FRV +D +
Sbjct: 188 TNVAAAGSVRAMDVRGSKSGDWMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSD 367
Query: 354 VLP 346
V+P
Sbjct: 368 VVP 376
Score = 24.0 bits (46), Expect(2) = 8e-033
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3 / +3
Query: 205 RSCTPIWCRS*KNVNQCANSN 143
RS +P WCR+ Q +SN
Sbjct: 351 RSSSPTWCRATWRFGQTFSSN 413
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 104 bits (221), Expect(3) = 5e-031
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = -1 / +1
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE++C
Sbjct: 148 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 327
Query: 786 VDS 778
S
Sbjct: 328 QGS 336
Score = 45.5 bits (93), Expect(3) = 5e-031
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAG 631
WC PPR HFD++ PA+LQI +AG
Sbjct: 418 WCNPPRAHFDMAEPAYLQIGIYRAG 492
Score = 23.1 bits (44), Expect(3) = 5e-031
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +1
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 352 SITITATNLCPP 387
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 82.2 bits (173), Expect(3) = 1e-028
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = -1 / +2
Query: 666 PAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKG 487
P + + GIVP+ Y+RV CAK+GG+R+T+ G+ YF +V ++NVG G I +VS+KG
Sbjct: 53 PPNYALPNDDGGIVPVLYQRVPCAKKGGVRFTVNGHDYFELVLVSNVGSVGSIRSVSIKG 232
Query: 486 SK 481
S+
Sbjct: 233 SR 238
Score = 57.9 bits (120), Expect(3) = 1e-028
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = -1 / +2
Query: 480 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 319
R W M RNWG WQ+ L+ +SL+F+V ++D + T +V PA W FG T+
Sbjct: 236 RTGWMPMSRNWGVNWQSNALLSGQSLSFQVTSTDGQTITFPNVAPAGWGFGQTF 397
Score = 24.4 bits (47), Expect(3) = 1e-028
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -1 / +2
Query: 753 AALVVTVTDLCPP 715
A++ +T T+LCPP
Sbjct: 20 ASVTITATNLCPP 58
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 74.8 bits (157), Expect(2) = 2e-028
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = -1 / +1
Query: 615 YRRVACAKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 484
Y RV C K+GG+R+TI G+ YFN+V +TNV GAGD+ +VS+KGS
Sbjct: 7 YCRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGS 138
Score = 71.2 bits (149), Expect(2) = 2e-028
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = -1 / +1
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 307
W M RNWGQ WQ+ DL +SL+FRV SD R TS + PA W FG T++ +
Sbjct: 148 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQ 312
>gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. vulgare cDNA clone HA21C12
5-PRIME, mRNA sequence
Length = 561
Score = 121 bits (259), Expect = 6e-027
Identities = 47/113 (41%), Positives = 69/113 (61%)
Frame = -1 / +3
Query: 639 KAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSKRVKWTEM 460
+ GI+PI Y+RV C K+GG+R+TI+G+ YF +V TNV AG + A+ V+GSK W M
Sbjct: 15 RGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLVLPTNVAAAGSVRAMDVRGSKSGDWMAM 194
Query: 459 KRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASKNF 301
NWG W + L + L+FRV +D + V+P W+FG T+ ++ F
Sbjct: 195 AHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVPRTWRFGQTFSSNLQF 353
>gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06A13u 3', mRNA sequence
Length = 523
Score = 74.8 bits (157), Expect(2) = 7e-027
Identities = 27/52 (51%), Positives = 40/52 (76%)
Frame = -1 / -2
Query: 639 KAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 484
+AGIVP+ Y+RV+C K+ GIR+ I+G YF +V +TNVGG+G + + +KGS
Sbjct: 519 QAGIVPVMYKRVSCQKRDGIRFGISGRDYFELVVVTNVGGSGVVVQMWIKGS 364
Score = 66.1 bits (138), Expect(2) = 7e-027
Identities = 26/57 (45%), Positives = 34/57 (59%)
Frame = -1 / -2
Query: 471 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASKNF 301
W M RNWG WQ+ L + L+FRV D R+AT+ V P++W FG TY + NF
Sbjct: 354 WLAMSRNWGANWQSNAYLNGQRLSFRVRLDDGREATASDVAPSNWWFGATYSSWINF 184
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 104 bits (221), Expect(3) = 1e-026
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = -1 / +3
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF DG ACG CYE++C
Sbjct: 159 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 338
Query: 786 VDS 778
S
Sbjct: 339 QGS 347
Score = 30.9 bits (61), Expect(3) = 1e-026
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 705 WCKPPREHFDLS 670
WC PPR HFD++
Sbjct: 429 WCNPPRAHFDMA 464
Score = 23.1 bits (44), Expect(3) = 1e-026
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 750 ALVVTVTDLCPP 715
++ +T T+LCPP
Sbjct: 363 SITITATNLCPP 398
>gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009I04f, mRNA sequence
Length = 817
Score = 99.1 bits (210), Expect(2) = 8e-026
Identities = 36/66 (54%), Positives = 43/66 (65%)
Frame = -1 / +1
Query: 984 HGKFTAGPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGG 805
H G W AHATFYGG D SGT GACGY + + GYG T A+ST LF +G +CG
Sbjct: 196 HAPIGGGAWASAHATFYGGGDASGTMGGACGYGNLYSTGYGSNTAALSTALFNNGLSCGA 375
Query: 804 CYEVRC 787
C++VRC
Sbjct: 376 CFKVRC 393
Score = 38.2 bits (77), Expect(2) = 8e-026
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -1 / +3
Query: 699 KPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQG 586
+P D+S + +I +AGIVP+SYRR AC ++G
Sbjct: 513 QPFPSQLDMSQRSVQRIVL*RAGIVPLSYRREACPEKG 626
>gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010L18f, mRNA sequence
Length = 677
Score = 95.9 bits (203), Expect(2) = 1e-024
Identities = 35/63 (55%), Positives = 42/63 (66%)
Frame = -1 / +1
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + + GYG T A+ST LF ACG CY+++C
Sbjct: 163 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNXXAACGSCYKLKC 342
Query: 786 VDS 778
S
Sbjct: 343 QGS 351
Score = 37.3 bits (75), Expect(2) = 1e-024
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1 / +2
Query: 696 PPREHFDLSMPAFLQIAQEKAGIVPISY 613
PPR HFD++ PA Q + GI P+SY
Sbjct: 443 PPRAHFDMAEPAHPQTXIYRPGIXPLSY 526
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 540,103,534
Number of Sequences: 312970
Number of extensions: 12677030
Number of successful extensions: 247969
Number of sequences better than 1.0e-020: 83
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 11620631964
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)