TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106166.2.1
(715 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG414540.1|BG414540 HVSMEk0002N03f Hordeum vulgare testa... 276 7e-074
gb|AV918175.1|AV918175 AV918175 K. Sato unpublished cDNA li... 204 1e-068
gb|AV916926.1|AV916926 AV916926 K. Sato unpublished cDNA li... 224 2e-064
gb|AL502418.1|AL502418 AL502418 Hordeum vulgare Barke roots... 165 7e-050
gb|BF064865.2|BF064865 HV_CEb0021D12f Hordeum vulgare seedl... 194 5e-049
gb|BE213865.1|BE213865 HV_CEb0001H21f Hordeum vulgare seedl... 184 5e-046
gb|BU986484.1|BU986484 HF12A02r HF Hordeum vulgare subsp. v... 183 7e-046
gb|CB882386.1|CB882386 HL01L15w HL Hordeum vulgare subsp. v... 181 3e-045
gb|BE454671.3|BE454671 HVSMEh0094P16f Hordeum vulgare 5-45 ... 178 3e-044
gb|AL507037.1|AL507037 AL507037 Hordeum vulgare Barke devel... 152 4e-042
gb|CK124865.1|CK124865 BES1824110k15 BES1824 Hordeum vulgar... 168 2e-041
gb|BQ763608.1|BQ763608 EBro02_SQ008_M23_R root, 3 week, hyd... 168 3e-041
gb|BI959839.1|BI959839 HVSMEn0021P10f Hordeum vulgare rachi... 104 2e-033
gb|BF623201.2|BF623201 HVSMEa0015K22f Hordeum vulgare seedl... 134 2e-032
gb|BQ766207.1|BQ766207 EBro08_SQ005_H07_R root, 3 week, dro... 138 4e-032
gb|AV833853.1|AV833853 AV833853 K. Sato unpublished cDNA li... 94 1e-029
gb|CA007491.1|CA007491 HU08C03r HU Hordeum vulgare subsp. v... 126 1e-028
gb|BG418054.1|BG418054 HVSMEk0021B11f Hordeum vulgare testa... 126 2e-028
gb|AL510457.1|AL510457 AL510457 Hordeum vulgare Barke devel... 124 6e-028
gb|CV059902.1|CV059902 BNEL52b8 Barley EST endosperm librar... 117 5e-026
gb|CV061694.1|CV061694 BNEL70h10 Barley EST endosperm libra... 117 5e-026
gb|BI956935.1|BI956935 HVSMEn0006D04f Hordeum vulgare rachi... 111 3e-024
gb|CA005904.1|CA005904 HU08C03u HU Hordeum vulgare subsp. v... 102 2e-021
gb|CA016130.1|CA016130 HV10D20u HV Hordeum vulgare subsp. v... 102 2e-021
>gb|BG414540.1|BG414540 HVSMEk0002N03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0002N03f, mRNA sequence
Length = 876
Score = 276 bits (598), Expect = 7e-074
Identities = 119/133 (89%), Positives = 126/133 (94%)
Frame = -2 / +3
Query: 690 IEQGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPF 511
I QGWLHTGD+GYFDE GQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPF
Sbjct: 288 IRQGWLHTGDLGYFDEEGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPF 467
Query: 510 PDAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPKSASGKILRR 331
PD EAGEVPIAYVVRS SSLTEVDVQKFI KQV YYK+LRRVTFV+SVPKSA+GKILRR
Sbjct: 468 PDDEAGEVPIAYVVRSPASSLTEVDVQKFIAKQVTYYKRLRRVTFVESVPKSAAGKILRR 647
Query: 330 ELISKVRSSKL*Q 292
ELI++VRSSKL*+
Sbjct: 648 ELIAQVRSSKL*E 686
Score = 169 bits (364), Expect = 1e-041
Identities = 76/126 (60%), Positives = 91/126 (72%)
Frame = +1 / -2
Query: 313 DFRDEFSSQDLP*SRFWYAVHKGHPPQFFVVCDLLFNKFLDINFSQRTLRGPYDVSNRNF 492
D R+E SSQDL FW+A+H+G+PPQ FVV DL +KFLD++F T R P+ + NRNF
Sbjct: 665 DLRNELSSQDLACG*FWHALHEGNPPQSFVVRDLFGDKFLDVHFG**TGR*PHHIGNRNF 486
Query: 493 TSFSIGERDNNSIQNFWMRQK*PFKLGRCNLKTFVLNQFFKSINYEKLTSLIKVSNITSM 672
SF I ERDN+ + N WMR K* FKL RCNL+TFVLNQ F SI+ +KL IKVS ITSM
Sbjct: 485 PSFIIRERDNDGV*NLWMR*K*SFKLSRCNLETFVLNQLF*SIDDKKLAFFIKVSKITSM 306
Query: 673 QPPLLD 690
QP L D
Sbjct: 305 QPSLPD 288
Score = 152 bits (326), Expect = 2e-036
Identities = 82/134 (61%), Positives = 93/134 (69%)
Frame = -3 / +1
Query: 692 RSSKGGCILVILDTLMREVSFS*LIDLKN*LSTKVFRLHLPSLKGYFCLIQKFWMLLLSR 513
+S K GCILVILDTLM++ SF ID K+*LSTKV RLHL SLK YF LIQ+F LSR
Sbjct: 286 QSGKDGCILVILDTLMKKASFLSSID*KS*LSTKVSRLHLLSLKDYFYLIQRF*TPSLSR 465
Query: 512 SPMLKLVKFLLLTS*GPLRVL*LKLMSRNLLKSRSHTTKN*GG*PLWTAYQNLLQGRS*E 333
S M+KL KFLL *G L V * K S+NL +RS TTK+*GG P W A QN Q RS*E
Sbjct: 466 SLMMKLGKFLLPMW*GHLPVH*PKWTSKNLSPNRSRTTKD*GGLPSWRACQNQPQARS*E 645
Query: 332 ENSSLKSDHPSYSK 291
E+S +S PSY K
Sbjct: 646 ESSLRRSGRPSYKK 687
Score = 149 bits (321), Expect = 1e-035
Identities = 76/132 (57%), Positives = 91/132 (68%)
Frame = -1 / +2
Query: 691 DRARVVAYW*YWIL**GRSAFRS**T*RTD*VQRFSDCTCRA*RATSVSSRNSGCCCYPV 512
++AR+VAYW* WIL** R AF *T R D*VQRF DCTC A*R TS+SSR+S YPV
Sbjct: 287 NQARMVAYW*SWIL**RRPAFCRR*TKRAD*VQRFPDCTC*A*RITSISSRDSRRRRYPV 466
Query: 511 PRC*SW*SSYCLRRKVL*EFFD*S*CPEIY*KAGRILQKIEEGDLCGQRTKICFREDLEK 332
P *SW SSYCL +V +F + S P+IY + G +LQK E G L G+R KI R+DLEK
Sbjct: 467 P***SWGSSYCLCGEVTCQFINRSGRPKIYRQTGHVLQKTEAGYLRGERAKISRRQDLEK 646
Query: 331 RTHL*SQIIQAI 296
R H Q++Q I
Sbjct: 647 RAHCAGQVVQVI 682
Score = 144 bits (308), Expect(2) = 3e-034
Identities = 63/78 (80%), Positives = 68/78 (87%)
Frame = +2 / -3
Query: 296 YSLDDLTLEMSSLLKIFPEADFGTLSTKVTLLNFL*YATCFSINFWTSTSVKELSEDLTT 475
Y+LDDLT MSSLLKI P ADFGTLSTKVT L+ L*Y TC +INFWTSTSV EL+ DLTT
Sbjct: 682 YNLDDLTCAMSSLLKILPAADFGTLSTKVTRLSLL*YVTCLAINFWTSTSVNELAGDLTT 503
Query: 476 *AIGTSPASASGNGITTA 529
*AIGTSPAS+SGNGITTA
Sbjct: 502 *AIGTSPASSSGNGITTA 449
Score = 135 bits (289), Expect = 3e-031
Identities = 69/130 (53%), Positives = 83/130 (63%)
Frame = +3 / -1
Query: 297 IAWMI*XXXXXXXXXXXXKQILVRCPQRSPSSIFCSMRPAFQ*ISGHQLQSKNSQRTLRR 476
I W * + IL R P+R P+S+FCS P ++*I G L+ N Q T
Sbjct: 681 ITWTT*PAQ*ALFSRSCLRLILARSPRR*PASVFCST*PVWR*IFGRPLRLMNWQVTSPH 502
Query: 477 KQ*ELHQLQHRGTG*QQHPEFLDETEVALQARQVQSENLCT*SVL*VYQLRKADLPHQSI 656
+Q*EL QL H+GTG*++ E LDE EV LQA+QVQS NLCT*S L VY+ +KA L HQSI
Sbjct: 501 RQ*ELPQLHHQGTG*RRRLESLDEIEVILQAQQVQSGNLCT*SALLVYRRQKAGLLHQSI 322
Query: 657 QYHQYATTLA 686
Q HQYAT LA
Sbjct: 321 QDHQYATILA 292
Score = 23.5 bits (45), Expect(2) = 3e-034
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2 / -3
Query: 668 VCNHPCSI 691
VCNHPC I
Sbjct: 310 VCNHPCLI 287
>gb|AV918175.1|AV918175 AV918175 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20b24 3', mRNA sequence
Length = 664
Score = 204 bits (440), Expect(2) = 1e-068
Identities = 91/107 (85%), Positives = 98/107 (91%)
Frame = -2 / -3
Query: 612 KELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPDAEAGEVPIAYVVRSSESSLTEVDV 433
K + KGFQIAPAELEGLLLSHPEILDAVVIPFPD EAGEVPIAYVVRS SSLTEVDV
Sbjct: 518 KS*LSTKGFQIAPAELEGLLLSHPEILDAVVIPFPDDEAGEVPIAYVVRSPASSLTEVDV 339
Query: 432 QKFIEKQVAYYKKLRRVTFVDSVPKSASGKILRRELISKVRSSKL*Q 292
QKFI KQV YYK+LRRVTFV+SVPKSA+GKILRRELI++VRSSKL*+
Sbjct: 338 QKFIAKQVTYYKRLRRVTFVESVPKSAAGKILRRELIAQVRSSKL*E 198
Score = 144 bits (308), Expect(2) = 6e-042
Identities = 63/78 (80%), Positives = 68/78 (87%)
Frame = +2 / +1
Query: 296 YSLDDLTLEMSSLLKIFPEADFGTLSTKVTLLNFL*YATCFSINFWTSTSVKELSEDLTT 475
Y+LDDLT MSSLLKI P ADFGTLSTKVT L+ L*Y TC +INFWTSTSV EL+ DLTT
Sbjct: 202 YNLDDLTCAMSSLLKILPAADFGTLSTKVTRLSLL*YVTCLAINFWTSTSVNELAGDLTT 381
Query: 476 *AIGTSPASASGNGITTA 529
*AIGTSPAS+SGNGITTA
Sbjct: 382 *AIGTSPASSSGNGITTA 435
Score = 126 bits (270), Expect(2) = 1e-036
Identities = 54/93 (58%), Positives = 67/93 (72%)
Frame = +1 / +3
Query: 313 DFRDEFSSQDLP*SRFWYAVHKGHPPQFFVVCDLLFNKFLDINFSQRTLRGPYDVSNRNF 492
D R+E SSQDL FW+A+H+G+PPQ FVV DL +KFLD++F T R P+ + NRNF
Sbjct: 219 DLRNELSSQDLACG*FWHALHEGNPPQSFVVRDLFGDKFLDVHFG**TGR*PHHIGNRNF 398
Query: 493 TSFSIGERDNNSIQNFWMRQK*PFKLGRCNLKT 591
SF I ERDN+ + N WMR K* FKL RCNL+T
Sbjct: 399 PSFIIRERDNDGV*NLWMR*K*SFKLSRCNLET 497
Score = 111 bits (238), Expect(2) = 4e-031
Identities = 57/119 (47%), Positives = 70/119 (58%)
Frame = -1 / -2
Query: 589 FSDCTCRA*RATSVSSRNSGCCCYPVPRC*SW*SSYCLRRKVL*EFFD*S*CPEIY*KAG 410
F DCTC A*R TS+SSR+S YPVP *SW SSYCL +V +F + S P+IY + G
Sbjct: 495 FPDCTC*A*RITSISSRDSRRRRYPVP***SWGSSYCLCGEVTCQFINRSGRPKIYRQTG 316
Query: 409 RILQKIEEGDLCGQRTKICFREDLEKRTHL*SQIIQAIASRLLCSEARTPSNLKICQIE 233
+LQK E G L G+R KI R+DLEKR H Q++Q I S NL + E
Sbjct: 315 HVLQKTEAGYLRGERAKISRRQDLEKRAHCAGQVVQVIGKSASISSCYISKNLPLGNAE 139
Score = 106 bits (227), Expect = 1e-022
Identities = 59/101 (58%), Positives = 67/101 (66%)
Frame = -3 / -1
Query: 593 KVFRLHLPSLKGYFCLIQKFWMLLLSRSPMLKLVKFLLLTS*GPLRVL*LKLMSRNLLKS 414
+V RLHL SLK YF LIQ+F LSRS M+KL KFLL *G L V * K S+NL +
Sbjct: 499 RVSRLHLLSLKDYFYLIQRF*TPSLSRSLMMKLGKFLLPMW*GHLPVH*PKWTSKNLSPN 320
Query: 413 RSHTTKN*GG*PLWTAYQNLLQGRS*EENSSLKSDHPSYSK 291
RS TTK+*GG P W A QN Q RS*EE+S +S PSY K
Sbjct: 319 RSRTTKD*GGLPSWRACQNQPQARS*EESSLRRSGRPSYRK 197
Score = 75.8 bits (159), Expect(2) = 1e-068
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = -2 / -2
Query: 684 QGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGF 586
QGWLHTGD+GYF+ GQLFVVDRLKELIKYKGF
Sbjct: 591 QGWLHTGDLGYFE*EGQLFVVDRLKELIKYKGF 493
Score = 46.9 bits (96), Expect(2) = 6e-042
Identities = 23/34 (67%), Positives = 25/34 (73%)
Frame = +3 / +3
Query: 585 ENLCT*SVL*VYQLRKADLPHQSIQYHQYATTLA 686
E LCT*S L VY+ +KA L QSIQ HQYAT LA
Sbjct: 492 ETLCT*SALLVYRRQKAGLLIQSIQDHQYATILA 593
Score = 46.4 bits (95), Expect(2) = 1e-036
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = +1 / +1
Query: 586 KTFVLNQFFKSINYEKLTSLIKVSNITSMQPPL 684
K FVLNQ F SI+ +KL L KVS ITSMQP L
Sbjct: 493 KPFVLNQLF*SIDDKKLAFLFKVSKITSMQPSL 591
Score = 42.8 bits (87), Expect(2) = 4e-031
Identities = 23/35 (65%), Positives = 25/35 (71%)
Frame = -1 / -1
Query: 688 RARVVAYW*YWIL**GRSAFRS**T*RTD*VQRFS 584
+AR+VAYW* WIL* R AF *T R D*VQR S
Sbjct: 595 QARMVAYW*SWIL*IRRPAFCRR*TKRAD*VQRVS 491
>gb|AV916926.1|AV916926 AV916926 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20b24 5', mRNA sequence
Length = 547
Score = 224 bits (484), Expect(2) = 2e-064
Identities = 95/104 (91%), Positives = 97/104 (93%)
Frame = -2 / +2
Query: 690 IEQGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPF 511
I QGWLHTGD+GYFDE GQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPF
Sbjct: 170 IRQGWLHTGDLGYFDEEGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPF 349
Query: 510 PDAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVT 379
PD EAGEVPIAYVVRS SSLTEVDVQKFI KQV YYK+LRRVT
Sbjct: 350 PDDEAGEVPIAYVVRSPASSLTEVDVQKFIAKQVTYYKRLRRVT 481
Score = 144 bits (308), Expect = 7e-034
Identities = 68/116 (58%), Positives = 80/116 (68%)
Frame = +1 / -1
Query: 343 LP*SRFWYAVHKGHPPQFFVVCDLLFNKFLDINFSQRTLRGPYDVSNRNFTSFSIGERDN 522
LP + F KG+PPQ FVV DL +KFLD++F T R P+ + NRNF SF I ERDN
Sbjct: 517 LPAADFGTLSTKGNPPQSFVVRDLFGDKFLDVHFG**TGR*PHHIGNRNFPSFIIRERDN 338
Query: 523 NSIQNFWMRQK*PFKLGRCNLKTFVLNQFFKSINYEKLTSLIKVSNITSMQPPLLD 690
+ + N WMR K* FKL RCNL+TFVLNQ F SI+ +KL IKVS ITSMQP L D
Sbjct: 337 DGV*NLWMR*K*SFKLSRCNLETFVLNQLF*SIDDKKLAFFIKVSKITSMQPSLPD 170
Score = 125 bits (267), Expect(3) = 2e-036
Identities = 61/101 (60%), Positives = 73/101 (72%)
Frame = +3 / -3
Query: 384 PSSIFCSMRPAFQ*ISGHQLQSKNSQRTLRRKQ*ELHQLQHRGTG*QQHPEFLDETEVAL 563
P+S+FCS P ++*I G L+ N Q T +Q*EL QL H+GTG*++ E LDE EV L
Sbjct: 476 PASVFCST*PVWR*IFGRPLRLMNWQVTSPHRQ*ELPQLHHQGTG*RRRLESLDEIEVIL 297
Query: 564 QARQVQSENLCT*SVL*VYQLRKADLPHQSIQYHQYATTLA 686
QA+QVQS NLCT*S L VY+ +KA L HQSIQ HQYAT LA
Sbjct: 296 QAQQVQSGNLCT*SALLVYRRQKAGLLHQSIQDHQYATILA 174
Score = 120 bits (256), Expect(2) = 6e-030
Identities = 66/105 (62%), Positives = 75/105 (71%)
Frame = -3 / +3
Query: 692 RSSKGGCILVILDTLMREVSFS*LIDLKN*LSTKVFRLHLPSLKGYFCLIQKFWMLLLSR 513
+S K GCILVILDTLM++ SF ID K+*LSTKV RLHL SLK YF LIQ+F LSR
Sbjct: 168 QSGKDGCILVILDTLMKKASFLSSID*KS*LSTKVSRLHLLSLKDYFYLIQRF*TPSLSR 347
Query: 512 SPMLKLVKFLLLTS*GPLRVL*LKLMSRNLLKSRSHTTKN*GG*P 378
S M+KL KFLL *G L V * K S+NL +RS TTK+*GG P
Sbjct: 348 SLMMKLGKFLLPMW*GHLPVH*PKWTSKNLSPNRSRTTKD*GGLP 482
Score = 117 bits (250), Expect(2) = 1e-028
Identities = 61/103 (59%), Positives = 72/103 (69%)
Frame = -1 / +1
Query: 691 DRARVVAYW*YWIL**GRSAFRS**T*RTD*VQRFSDCTCRA*RATSVSSRNSGCCCYPV 512
++AR+VAYW* WIL** R AF *T R D*VQRF DCTC A*R TS+SSR+S YPV
Sbjct: 169 NQARMVAYW*SWIL**RRPAFCRR*TKRAD*VQRFPDCTC*A*RITSISSRDSRRRRYPV 348
Query: 511 PRC*SW*SSYCLRRKVL*EFFD*S*CPEIY*KAGRILQKIEEG 383
P *SW SSYCL +V +F + S P+IY + G +LQK E G
Sbjct: 349 P***SWGSSYCLCGEVTCQFINRSGRPKIYRQTGHVLQKTEAG 477
Score = 93.6 bits (198), Expect(2) = 2e-023
Identities = 40/51 (78%), Positives = 45/51 (88%)
Frame = +2 / -2
Query: 377 KVTLLNFL*YATCFSINFWTSTSVKELSEDLTT*AIGTSPASASGNGITTA 529
+VT L+ L*Y TC +INFWTSTSV EL+ DLTT*AIGTSPAS+SGNGITTA
Sbjct: 483 RVTRLSLL*YVTCLAINFWTSTSVNELAGDLTT*AIGTSPASSSGNGITTA 331
Score = 41.8 bits (85), Expect(2) = 2e-064
Identities = 17/21 (80%), Positives = 21/21 (100%)
Frame = -2 / +3
Query: 378 FVDSVPKSASGKILRRELISK 316
FV+SVPKSA+GKILRRELI++
Sbjct: 483 FVESVPKSAAGKILRRELIAQ 545
Score = 41.4 bits (84), Expect(3) = 2e-036
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = +2 / -1
Query: 314 TLEMSSLLKIFPEADFGTLSTK 379
T MSSLLKI P ADFGTLSTK
Sbjct: 547 TCAMSSLLKILPAADFGTLSTK 482
Score = 35.4 bits (71), Expect(2) = 2e-023
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1 / -3
Query: 319 RDEFSSQDLP*SRFWYAVHKGHPPQFF 399
R+E SSQDL FW+A+H+G P F
Sbjct: 542 RNELSSQDLACG*FWHALHEG*PASVF 462
Score = 30.4 bits (60), Expect(2) = 6e-030
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1 / +2
Query: 400 QKIEEGDLCGQRTKICFREDLEKRTH 323
+++ L G+R KI R+DLEKR H
Sbjct: 461 KRLRRVTLRGERAKISRRQDLEKRAH 538
Score = 28.6 bits (56), Expect(2) = 1e-028
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3 / +1
Query: 398 KN*GG*PLWTAYQNLLQGRS*EENS 324
K G P W A QN Q RS*EE+S
Sbjct: 463 KTEAGYPSWRACQNQPQARS*EESS 537
Score = 23.5 bits (45), Expect(3) = 2e-036
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2 / -2
Query: 668 VCNHPCSI 691
VCNHPC I
Sbjct: 192 VCNHPCLI 169
>gb|AL502418.1|AL502418 AL502418 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I12u 3', mRNA sequence
Length = 592
Score = 165 bits (354), Expect(2) = 7e-050
Identities = 73/84 (86%), Positives = 79/84 (94%)
Frame = -2 / -1
Query: 543 PEILDAVVIPFPDAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSV 364
PEILDAVVIPFPD EAGEVPIAYVVRS SSLTEVDVQKFI KQV YYK+LRRVTFV+SV
Sbjct: 520 PEILDAVVIPFPDDEAGEVPIAYVVRSPASSLTEVDVQKFIAKQVTYYKRLRRVTFVESV 341
Query: 363 PKSASGKILRRELISKVRSSKL*Q 292
PKSA+GKILRRELI++VRSSKL*+
Sbjct: 340 PKSAAGKILRRELIAQVRSSKL*E 269
Score = 144 bits (308), Expect(2) = 6e-039
Identities = 63/78 (80%), Positives = 68/78 (87%)
Frame = +2 / +3
Query: 296 YSLDDLTLEMSSLLKIFPEADFGTLSTKVTLLNFL*YATCFSINFWTSTSVKELSEDLTT 475
Y+LDDLT MSSLLKI P ADFGTLSTKVT L+ L*Y TC +INFWTSTSV EL+ DLTT
Sbjct: 273 YNLDDLTCAMSSLLKILPAADFGTLSTKVTRLSLL*YVTCLAINFWTSTSVNELAGDLTT 452
Query: 476 *AIGTSPASASGNGITTA 529
*AIGTSPAS+SGNGITTA
Sbjct: 453 *AIGTSPASSSGNGITTA 506
Score = 99.6 bits (211), Expect(2) = 2e-024
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +1 / +2
Query: 313 DFRDEFSSQDLP*SRFWYAVHKGHPPQFFVVCDLLFNKFLDINFSQRTLRGPYDVSNRNF 492
D R+E SSQDL FW A+H+G+PPQ FVV DL +KFLD++F T R P+ + NRNF
Sbjct: 290 DLRNELSSQDLACG*FWXALHEGNPPQSFVVRDLFGDKFLDVHFG**TGR*PHHIGNRNF 469
Query: 493 TSFSIGERDNNSIQNFW 543
SF I ERDN+ + N W
Sbjct: 470 PSFIIRERDNDGV*NLW 520
Score = 85.4 bits (180), Expect(2) = 4e-023
Identities = 43/96 (44%), Positives = 54/96 (56%)
Frame = -1 / -3
Query: 520 YPVPRC*SW*SSYCLRRKVL*EFFD*S*CPEIY*KAGRILQKIEEGDLCGQRTKICFRED 341
YPVP *SW SSYCL +V +F + S P+IY + G +LQK E G L G+R KI R+D
Sbjct: 497 YPVP***SWGSSYCLCGEVTCQFINRSGRPKIYRQTGHVLQKTEAGYLRGERXKISRRQD 318
Query: 340 LEKRTHL*SQIIQAIASRLLCSEARTPSNLKICQIE 233
LEKR H Q++Q I S NL + E
Sbjct: 317 LEKRAHCAGQVVQVIGKSASISSCYISKNLPLGNAE 210
Score = 52.4 bits (108), Expect(2) = 7e-050
Identities = 22/24 (91%), Positives = 22/24 (91%)
Frame = -2 / -3
Query: 612 KELIKYKGFQIAPAELEGLLLSHP 541
KELIK KGFQIAPAE EGLLLSHP
Sbjct: 590 KELIKSKGFQIAPAEXEGLLLSHP 519
Score = 42.3 bits (86), Expect(2) = 4e-023
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -1 / -2
Query: 610 RTD*VQRFSDCTCRA*RATSVSSR 539
R D*VQRF DCTC A*R TS+SS+
Sbjct: 588 RAD*VQRFPDCTC*A*RITSISSQ 517
Score = 36.8 bits (74), Expect(2) = 6e-039
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +1 / +3
Query: 544 MRQK*PFKLGRCNLKTFVLNQFF 612
MR K* F L RCNL+TF LNQ F
Sbjct: 522 MR*K*SFXLSRCNLETFGLNQLF 590
Score = 32.2 bits (64), Expect(2) = 2e-024
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +3 / +2
Query: 543 DETEVALQARQVQSENLCT*SVL 611
DE EV L A+QVQS NL T*S L
Sbjct: 521 DEIEVILXAQQVQSGNLWT*SAL 589
>gb|BF064865.2|BF064865 HV_CEb0021D12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021D12f, mRNA sequence
Length = 806
Score = 194 bits (418), Expect = 5e-049
Identities = 79/125 (63%), Positives = 97/125 (77%)
Frame = -2 / +3
Query: 681 GWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPDA 502
GWL TGD+ Y DE G LFVVDRLKELIKYKG+Q+ PAELE LLL+HPE+ D VIPFPD
Sbjct: 243 GWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQVPPAELEALLLTHPEVSDVAVIPFPDR 422
Query: 501 EAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPKSASGKILRRELI 322
E G+ P+AYVVR S+L+ +V +F+ KQVA YKK+R+V FV +PK+ASGKILR++LI
Sbjct: 423 EVGQFPMAYVVRKKGSNLSAQEVMEFVAKQVAPYKKVRKVAFVTDIPKNASGKILRKDLI 602
Query: 321 SKVRS 307
S
Sbjct: 603 KLATS 617
>gb|BE213865.1|BE213865 HV_CEb0001H21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001H21f, mRNA sequence
Length = 922
Score = 184 bits (396), Expect = 5e-046
Identities = 70/125 (56%), Positives = 100/125 (80%)
Frame = -2 / +1
Query: 687 EQGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFP 508
+ GWLHTGDIG D+ ++F+VDRLKE++KYKGFQ+APAELE LL++HPEI DA V+
Sbjct: 97 KDGWLHTGDIGIVDDDDEIFIVDRLKEIMKYKGFQVAPAELEALLITHPEIKDAAVVSLK 276
Query: 507 DAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPKSASGKILRRE 328
D AGEVPIA+V+R S +TE D++KF+ K+V +YK++ +V F DS+PK+ SG+ILR++
Sbjct: 277 DDLAGEVPIAFVMRIEGSEITEDDIKKFVAKEVGFYKRIHKVFFTDSMPKNPSGEILRKD 456
Query: 327 LISKV 313
L +++
Sbjct: 457 LRARL 471
>gb|BU986484.1|BU986484 HF12A02r HF Hordeum vulgare subsp. vulgare cDNA clone HF12A02
5-PRIME, mRNA sequence
Length = 577
Score = 183 bits (395), Expect = 7e-046
Identities = 74/126 (58%), Positives = 97/126 (76%)
Frame = -2 / +1
Query: 684 QGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPD 505
+GWL TGD+ YF+E G L++VDRLKELIKYKG+Q+ PAELE +L SHPEI DA VI +PD
Sbjct: 73 EGWLKTGDLCYFNEDGFLYIVDRLKELIKYKGYQVPPAELEHILQSHPEIADAAVIGYPD 252
Query: 504 AEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPKSASGKILRREL 325
+ G++P+A++VR SSLT V ++ K VA YKK+RRV FV ++PKS +GKILRREL
Sbjct: 253 EDVGQLPMAFIVRQPGSSLTGKQVMDYVAKHVAPYKKVRRVAFVAAIPKSPAGKILRREL 432
Query: 324 ISKVRS 307
+ + S
Sbjct: 433 VQQAMS 450
>gb|CB882386.1|CB882386 HL01L15w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L15
3-PRIME, mRNA sequence
Length = 490
Score = 181 bits (390), Expect = 3e-045
Identities = 68/123 (55%), Positives = 97/123 (78%)
Frame = -2 / +1
Query: 681 GWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPDA 502
GWLHTGDIGY D+ ++F+VDRLKE+IKYKGFQ+ PAELE LL++H EI DA V+ D
Sbjct: 10 GWLHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHAEIKDAAVVSMQDE 189
Query: 501 EAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPKSASGKILRRELI 322
GEVP+A++VR S ++E ++++F+ K+V +YK++ +V F DSVPKS +GKILR++L
Sbjct: 190 LTGEVPVAFIVRIEGSEISESEIKQFVAKEVVFYKRIHKVFFADSVPKSPAGKILRKDLR 369
Query: 321 SKV 313
+K+
Sbjct: 370 AKL 378
>gb|BE454671.3|BE454671 HVSMEh0094P16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0094P16f, mRNA sequence
Length = 685
Score = 178 bits (383), Expect = 3e-044
Identities = 68/115 (59%), Positives = 91/115 (79%)
Frame = -2 / +1
Query: 687 EQGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFP 508
+ GWLHTGDIG D+ ++F+VDRLKE+IKYKGFQ+APAELE LL++HPEI DA V+
Sbjct: 337 KDGWLHTGDIGIVDDDDEIFIVDRLKEIIKYKGFQVAPAELEALLITHPEIKDAAVVSLK 516
Query: 507 DAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPKSASGK 343
D AGEVPIA+V+R S +TE D++KF+ K+V +YK++ +V F DS+PK+ SGK
Sbjct: 517 DDLAGEVPIAFVMRIEGSEITEDDIKKFVAKEVVFYKRIHKVFFTDSIPKNPSGK 681
>gb|AL507037.1|AL507037 AL507037 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04P21T 5',
mRNA sequence
Length = 700
Score = 152 bits (327), Expect(2) = 4e-042
Identities = 59/108 (54%), Positives = 86/108 (79%)
Frame = -2 / -2
Query: 636 QLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPDAEAGEVPIAYVVRSSE 457
++ +VDR+KELIK+KGFQ+ PAELE L++HP I DA V+P D AGEVP+A+VVR+++
Sbjct: 627 KVXIVDRVKELIKFKGFQVPPAELEAXLIAHPSIADAAVVPQKDDAAGEVPVAFVVRAAD 448
Query: 456 SSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPKSASGKILRRELISKV 313
S + E +++F+ KQV +YK+L +V F ++PKSASGKILR+EL +K+
Sbjct: 447 SDIAEEAIKEFVSKQVVFYKRLHKVYFTHAIPKSASGKILRKELRAKL 304
Score = 38.6 bits (78), Expect(2) = 4e-042
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -2 / -3
Query: 684 QGWLHTGDIGYFDEGGQ 634
+GWLHTGDIGY D+ G+
Sbjct: 677 EGWLHTGDIGYVDDDGR 627
>gb|CK124865.1|CK124865 BES1824110k15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010K1510 5-PRIME, mRNA sequence
Length = 630
Score = 168 bits (362), Expect = 2e-041
Identities = 62/114 (54%), Positives = 89/114 (78%)
Frame = -2 / +1
Query: 684 QGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPD 505
+GWLHTGDIGY D+ ++F+VDR+KELIK+KGFQ+ PAELE LL++HP I DA V+P D
Sbjct: 235 EGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQVPPAELEALLIAHPSIADAAVVPQKD 414
Query: 504 AEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPKSASGK 343
AGEVP+A+VVR+++S + E +++F+ KQV +YK+L +V F ++PK G+
Sbjct: 415 DAAGEVPVAFVVRAADSDIAEEAIKEFVSKQVVFYKRLHKVYFTHAIPKFGVGE 576
>gb|BQ763608.1|BQ763608 EBro02_SQ008_M23_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_M23 5', mRNA sequence
Length = 590
Score = 168 bits (361), Expect = 3e-041
Identities = 64/110 (58%), Positives = 86/110 (78%)
Frame = -2 / +3
Query: 687 EQGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFP 508
+ GWLHTGDIG D+ ++F+VDRLKE+IKYKGFQ+APAELE LL++HPEI DA V+
Sbjct: 261 KDGWLHTGDIGIVDDDDEIFIVDRLKEIIKYKGFQVAPAELEALLITHPEIKDAAVVSLK 440
Query: 507 DAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPK 358
D AGEVPIA+V+R S +TE D++KF+ K+ +YK++ +V F DS+PK
Sbjct: 441 DDLAGEVPIAFVMRIEGSEITEDDIKKFVAKEGVFYKRIHKVFFTDSIPK 590
>gb|BI959839.1|BI959839 HVSMEn0021P10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021P10f, mRNA sequence
Length = 657
Score = 104 bits (222), Expect(2) = 2e-033
Identities = 40/80 (50%), Positives = 61/80 (76%)
Frame = -2 / -1
Query: 552 LSHPEILDAVVIPFPDAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFV 373
++HPEI DA V+ D AGEVPIA+V+R S +TE D++KF+ K+V +YK++ +V F
Sbjct: 552 ITHPEIKDAAVVSLKDDLAGEVPIAFVMRIEGSEITEDDIKKFVAKEVVFYKRIHKVFFT 373
Query: 372 DSVPKSASGKILRRELISKV 313
DS+PK+ SGKILR++L +++
Sbjct: 372 DSIPKNPSGKILRKDLRARL 313
Score = 57.9 bits (120), Expect(2) = 2e-033
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = -2 / -3
Query: 648 DEGGQLFVVDRLKELIKYKGFQIAPAELE 562
D+ ++F+VDRLKE+IKYKGFQ+APAELE
Sbjct: 649 DDDDEIFIVDRLKEIIKYKGFQVAPAELE 563
>gb|BF623201.2|BF623201 HVSMEa0015K22f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015K22f, mRNA sequence
Length = 817
Score = 134 bits (288), Expect(2) = 2e-032
Identities = 52/97 (53%), Positives = 72/97 (74%)
Frame = -2 / +3
Query: 687 EQGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFP 508
+ GWLHTGDIGY D+ ++F+VDRLKE+IKYKGFQ+ PAELE LL++H EI DA V+
Sbjct: 468 KDGWLHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEPLLITHAEIKDAAVVSMQ 647
Query: 507 DAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYK 397
D GEVP+A++VR S ++E ++++F K+V K
Sbjct: 648 DELTGEVPVAFIVRIEGSEISESEIKQFGAKEVVSTK 758
Score = 24.4 bits (47), Expect(2) = 2e-032
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 387 RVTFVDSVPKSASGK 343
+V F DSVPKS +G+
Sbjct: 765 QVFFADSVPKSPAGR 809
>gb|BQ766207.1|BQ766207 EBro08_SQ005_H07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_H07 5', mRNA sequence
Length = 552
Score = 138 bits (295), Expect = 4e-032
Identities = 54/87 (62%), Positives = 69/87 (79%)
Frame = -2 / +3
Query: 687 EQGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFP 508
+ GWLHTGDIG D+ ++F+VDRLKE+IKYKGFQ+APAELE LL++HPEI DA V+
Sbjct: 291 KDGWLHTGDIGIVDDDDEIFIVDRLKEIIKYKGFQVAPAELEALLITHPEIKDAAVVSLK 470
Query: 507 DAEAGEVPIAYVVRSSESSLTEVDVQK 427
D AGEVPIA+V+R S +TE D++K
Sbjct: 471 DDLAGEVPIAFVMRIEGSEITEDDIKK 551
>gb|AV833853.1|AV833853 AV833853 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags8m01, mRNA sequence
Length = 599
Score = 94.1 bits (199), Expect(3) = 1e-029
Identities = 37/75 (49%), Positives = 56/75 (74%)
Frame = -2 / +3
Query: 537 ILDAVVIPFPDAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPK 358
I DA V+ D AGEVPIA+V+R S +TE D++KF+ K+V +YK++ +V F DS+PK
Sbjct: 168 IKDAAVVSLKDDLAGEVPIAFVMRIEGSEITEDDIKKFVAKEVVFYKRIHKVFFTDSIPK 347
Query: 357 SASGKILRRELISKV 313
+ SGKILR++L +++
Sbjct: 348 NPSGKILRKDLRARL 392
Score = 49.6 bits (102), Expect(3) = 1e-029
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = -2 / +1
Query: 633 LFVVDRLKELIKYKGFQIAPAELEG 559
+F+VDRLKE+IKYKGFQ+APA G
Sbjct: 70 IFIVDRLKEIIKYKGFQVAPAXARG 144
Score = 24.0 bits (46), Expect(3) = 1e-029
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2 / +2
Query: 696 HEIEQGWLHTG 664
H GWLHTG
Sbjct: 5 HRTRXGWLHTG 37
>gb|CA007491.1|CA007491 HU08C03r HU Hordeum vulgare subsp. vulgare cDNA clone HU08C03
5-PRIME, mRNA sequence
Length = 581
Score = 126 bits (270), Expect = 1e-028
Identities = 49/69 (71%), Positives = 56/69 (81%)
Frame = -2 / +1
Query: 681 GWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPDA 502
GWL TGD+ Y DE G LFVVDRLKELIKYKG+Q+ PAELE LLL+HPE+ D VIPFPD
Sbjct: 373 GWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQLPPAELEALLLTHPEVSDVAVIPFPDR 552
Query: 501 EAGEVPIAY 475
E G+ P+AY
Sbjct: 553 EVGQFPMAY 579
>gb|BG418054.1|BG418054 HVSMEk0021B11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0021B11f, mRNA sequence
Length = 491
Score = 126 bits (269), Expect = 2e-028
Identities = 50/80 (62%), Positives = 64/80 (80%)
Frame = -2 / +1
Query: 684 QGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPD 505
+GWL TGD+ YF+E G L++VDRLKELIKYKG+Q PAELE +L SHPEI DA VI +PD
Sbjct: 244 EGWLKTGDLCYFNEDGFLYIVDRLKELIKYKGYQGPPAELEHILQSHPEIADAAVIGYPD 423
Query: 504 AEAGEVPIAYVVRSSESSLT 445
+ G++P+A++VR SSLT
Sbjct: 424 EDVGQLPMAFIVRQPGSSLT 483
>gb|AL510457.1|AL510457 AL510457 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04P21u 3',
mRNA sequence
Length = 508
Score = 124 bits (265), Expect = 6e-028
Identities = 46/71 (64%), Positives = 59/71 (83%)
Frame = -2 / +1
Query: 684 QGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPD 505
+GWLHTGDIGY D+ ++F+VDR+KELIK+KGFQ+ PAELE LL++HP I DA V+P D
Sbjct: 286 EGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQVPPAELEALLIAHPSIADAAVVPQKD 465
Query: 504 AEAGEVPIAYV 472
AGEVP+A+V
Sbjct: 466 DAAGEVPVAFV 498
>gb|CV059902.1|CV059902 BNEL52b8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL52b8 5' similar to Putative
AMP-binding protein, mRNA sequence
Length = 548
Score = 117 bits (251), Expect = 5e-026
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = -2 / +1
Query: 558 LLLSHPEILDAVVIPFPDAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVT 379
LLL+HPE+ D VIPFPD E G+ P+AYVVR S+L+ +V +F+ KQVA YKK+R+V
Sbjct: 1 LLLTHPEVSDVAVIPFPDREVGQFPMAYVVRKKGSNLSAQEVMEFVAKQVAPYKKVRKVA 180
Query: 378 FVDSVPKSASGKILRRELISKVRS 307
FV +PK+ASGKILR++LI S
Sbjct: 181 FVTDIPKNASGKILRKDLIKLATS 252
>gb|CV061694.1|CV061694 BNEL70h10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL70h10 5' similar to Putative
AMP-binding protein, mRNA sequence
Length = 568
Score = 117 bits (251), Expect = 5e-026
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = -2 / +1
Query: 558 LLLSHPEILDAVVIPFPDAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVT 379
LLL+HPE+ D VIPFPD E G+ P+AYVVR S+L+ +V +F+ KQVA YKK+R+V
Sbjct: 1 LLLTHPEVSDVAVIPFPDREVGQFPMAYVVRKKGSNLSAQEVMEFVAKQVAPYKKVRKVA 180
Query: 378 FVDSVPKSASGKILRRELISKVRS 307
FV +PK+ASGKILR++LI S
Sbjct: 181 FVTDIPKNASGKILRKDLIKLATS 252
>gb|BI956935.1|BI956935 HVSMEn0006D04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0006D04f, mRNA sequence
Length = 654
Score = 111 bits (238), Expect = 3e-024
Identities = 45/75 (60%), Positives = 57/75 (76%)
Frame = -2 / +1
Query: 687 EQGWLHTGDIGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFP 508
+ GWLHTGDIG D+ ++F+VDRLKE+IKYKGFQ+APA+LE LL++HPEI D V+
Sbjct: 430 KDGWLHTGDIGIVDDDDEIFIVDRLKEIIKYKGFQVAPAKLEALLITHPEIQDXGVVFLK 609
Query: 507 DAEAGEVPIAYVVRS 463
D A EVPI +V S
Sbjct: 610 DDLACEVPIPFVCGS 654
>gb|CA005904.1|CA005904 HU08C03u HU Hordeum vulgare subsp. vulgare cDNA clone HU08C03
3-PRIME, mRNA sequence
Length = 484
Score = 102 bits (218), Expect = 2e-021
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = -2 / -1
Query: 537 ILDAVVIPFPDAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPK 358
+ D VIPFPD E G+ P+AYVVR S+L+ +V +F+ KQVA YKK+R+V FV +PK
Sbjct: 484 VSDVAVIPFPDREVGQFPMAYVVRKKGSNLSAQEVMEFVAKQVAPYKKVRKVAFVTDIPK 305
Query: 357 SASGKILRRELISKVRS 307
+ASGKILR++LI S
Sbjct: 304 NASGKILRKDLIKLATS 254
>gb|CA016130.1|CA016130 HV10D20u HV Hordeum vulgare subsp. vulgare cDNA clone HV10D20
3-PRIME, mRNA sequence
Length = 491
Score = 102 bits (217), Expect = 2e-021
Identities = 42/75 (56%), Positives = 55/75 (73%)
Frame = -2 / -3
Query: 531 DAVVIPFPDAEAGEVPIAYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPKSA 352
D VIPFPD E G+ P+AYVVR S+L+ +V +F+ KQVA YKK+R+V FV +PK+A
Sbjct: 489 DVAVIPFPDREVGQFPMAYVVRKKGSNLSAQEVMEFVAKQVAPYKKVRKVAFVTDIPKNA 310
Query: 351 SGKILRRELISKVRS 307
SGKILR++LI S
Sbjct: 309 SGKILRKDLIKLATS 265
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 313,144,130
Number of Sequences: 312970
Number of extensions: 4101186
Number of successful extensions: 44845
Number of sequences better than 1.0e-020: 31
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7889507874
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)