TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3106160.2.1
         (788 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA027623.1|CA027623  HZ59I03r HZ Hordeum vulgare subsp. v...   155   2e-037

>gb|CA027623.1|CA027623 HZ59I03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59I03
           5-PRIME, mRNA sequence
          Length = 370

 Score =  155 bits (334), Expect = 2e-037
 Identities = 60/72 (83%), Positives = 65/72 (90%)
 Frame = +3 / +2

                                                                       
Query: 3   AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
           AA+LHYTYTKFSDLTSRRDRCGCKPTKEDVKRCF+L+FDR AFIIASTA+E+EM  WY E
Sbjct: 155 AAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDRLAFIIASTATEQEMRNWYRE 334

                       
Query: 183 RVVWTDKQLNLK 218
            VVWTDK  NLK
Sbjct: 335 HVVWTDKDTNLK 370



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 350,594,070
Number of Sequences: 312970
Number of extensions: 5076626
Number of successful extensions: 36522
Number of sequences better than 1.0e-020: 1
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 8841785190
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)