TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071418.2.1
(1432 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF259471.1|BF259471 HVSMEf0019D06f Hordeum vulgare seedl... 238 6e-062
gb|AW982411.2|AW982411 HVSMEg0003D05f Hordeum vulgare pre-a... 217 8e-058
emb|X77467.1|HVOMET H.vulgare L. mRNA for flavonoid 7-O-met... 171 4e-056
gb|AV836790.1|AV836790 AV836790 K. Sato unpublished cDNA li... 145 6e-056
gb|BM817329.1|BM817329 HC105E06_T3.ab1 HC Hordeum vulgare s... 152 5e-054
gb|BF628874.2|BF628874 HVSMEb0009A12f Hordeum vulgare seedl... 210 2e-053
gb|BU974771.1|BU974771 HB29A24r BC Hordeum vulgare subsp. v... 160 4e-053
gb|BJ462654.1|BJ462654 BJ462654 K. Sato unpublished cDNA li... 207 1e-052
gb|BJ467760.1|BJ467760 BJ467760 K. Sato unpublished cDNA li... 197 1e-049
gb|BI956571.1|BI956571 HVSMEn0004D06f Hordeum vulgare rachi... 181 8e-049
gb|CB879734.1|CB879734 HP03H10w HP Hordeum vulgare subsp. v... 160 1e-048
gb|CB877071.1|CB877071 HP03H10T HP Hordeum vulgare subsp. v... 160 5e-048
gb|AV917258.1|AV917258 AV917258 K. Sato unpublished cDNA li... 191 7e-048
gb|AV922427.1|AV922427 AV922427 K. Sato unpublished cDNA li... 191 7e-048
gb|AL503330.1|AL503330 AL503330 Hordeum vulgare Barke roots... 182 8e-046
gb|AV916317.1|AV916317 AV916317 K. Sato unpublished cDNA li... 183 2e-045
gb|BM817346.1|BM817346 HC111F01_T3.ab1 HC Hordeum vulgare s... 182 6e-045
gb|BI778623.2|BI778623 EBro07_SQ003_N10_R root, 3 week, red... 182 6e-045
gb|BG343272.2|BG343272 HVSMEg0005E13f Hordeum vulgare pre-a... 104 2e-044
gb|BJ449787.1|BJ449787 BJ449787 K. Sato unpublished cDNA li... 149 4e-044
gb|CD662493.1|CD662493 UCRHV18_01ch06_b1 Drought-stressed D... 151 6e-044
gb|AL503735.1|AL503735 AL503735 Hordeum vulgare Barke roots... 178 7e-044
gb|CB879386.1|CB879386 HP02A07w HP Hordeum vulgare subsp. v... 153 3e-043
gb|BF253847.2|BF253847 HVSMEf0002E15f Hordeum vulgare seedl... 174 1e-042
gb|BF259348.2|BF259348 HVSMEf0019F16f Hordeum vulgare seedl... 149 4e-042
gb|AV921748.1|AV921748 AV921748 K. Sato unpublished cDNA li... 171 1e-041
gb|BJ468231.1|BJ468231 BJ468231 K. Sato unpublished cDNA li... 171 1e-041
gb|BJ457207.1|BJ457207 BJ457207 K. Sato unpublished cDNA li... 148 1e-040
gb|BF264626.3|BF264626 HV_CEa0009O22f Hordeum vulgare seedl... 156 8e-040
gb|BJ468335.1|BJ468335 BJ468335 K. Sato unpublished cDNA li... 156 8e-040
gb|AV918157.1|AV918157 AV918157 K. Sato unpublished cDNA li... 151 2e-039
gb|CD662288.1|CD662288 UCRHV18_01aa10_b1 Drought-stressed D... 135 5e-039
gb|CD663812.1|CD663812 UCRHV18_06ch08_b1 Drought-stressed D... 135 5e-039
gb|AV930320.1|AV930320 AV930320 K. Sato unpublished cDNA li... 132 7e-039
gb|AV931831.1|AV931831 AV931831 K. Sato unpublished cDNA li... 131 2e-038
gb|AV928022.1|AV928022 AV928022 K. Sato unpublished cDNA li... 131 2e-038
gb|BJ466406.1|BJ466406 BJ466406 K. Sato unpublished cDNA li... 158 6e-038
gb|AV929439.1|AV929439 AV929439 K. Sato unpublished cDNA li... 132 1e-037
gb|AV930527.1|AV930527 AV930527 K. Sato unpublished cDNA li... 128 1e-037
gb|BQ662115.1|BQ662115 HR01K01u HR Hordeum vulgare subsp. v... 132 1e-037
gb|AV921351.1|AV921351 AV921351 K. Sato unpublished cDNA li... 156 2e-037
gb|BJ468058.1|BJ468058 BJ468058 K. Sato unpublished cDNA li... 156 2e-037
gb|BJ463550.1|BJ463550 BJ463550 K. Sato unpublished cDNA li... 133 2e-037
gb|AV930452.1|AV930452 AV930452 K. Sato unpublished cDNA li... 128 4e-037
gb|BQ658222.1|BQ658222 HA05D15u HA Hordeum vulgare subsp. v... 111 8e-037
gb|AV931697.1|AV931697 AV931697 K. Sato unpublished cDNA li... 125 1e-036
gb|AV918926.1|AV918926 AV918926 K. Sato unpublished cDNA li... 153 2e-036
gb|CB879142.1|CB879142 HP11B09T HP Hordeum vulgare subsp. v... 153 2e-036
gb|AV928262.1|AV928262 AV928262 K. Sato unpublished cDNA li... 127 3e-036
gb|BQ659524.1|BQ659524 HE01L03u HE Hordeum vulgare subsp. v... 144 3e-036
gb|AV920383.1|AV920383 AV920383 K. Sato unpublished cDNA li... 126 7e-036
gb|BF260928.2|BF260928 HVSMEf0023E24f Hordeum vulgare seedl... 151 1e-035
gb|BI777619.2|BI777619 EBro08_SQ001_A05_R root, 3 week, dro... 151 1e-035
gb|AV928023.1|AV928023 AV928023 K. Sato unpublished cDNA li... 124 1e-035
gb|AV918077.1|AV918077 AV918077 K. Sato unpublished cDNA li... 149 5e-035
gb|AV918703.1|AV918703 AV918703 K. Sato unpublished cDNA li... 149 5e-035
gb|AV929534.1|AV929534 AV929534 K. Sato unpublished cDNA li... 149 5e-035
gb|BF259414.3|BF259414 HVSMEf0019A18f Hordeum vulgare seedl... 144 1e-033
gb|BF256054.2|BF256054 HVSMEf0008J16f Hordeum vulgare seedl... 142 6e-033
gb|BJ467944.1|BJ467944 BJ467944 K. Sato unpublished cDNA li... 142 6e-033
gb|CD662211.1|CD662211 UCRHV18_01af07_b1 Drought-stressed D... 111 1e-032
gb|AV920613.1|AV920613 AV920613 K. Sato unpublished cDNA li... 140 1e-032
gb|BJ468232.1|BJ468232 BJ468232 K. Sato unpublished cDNA li... 136 3e-031
gb|BI960501.1|BI960501 HVSMEn0024N01f Hordeum vulgare rachi... 65 3e-031
gb|AV913364.1|AV913364 AV913364 K. Sato unpublished cDNA li... 133 3e-031
gb|AV918663.1|AV918663 AV918663 K. Sato unpublished cDNA li... 133 3e-031
gb|BJ463768.1|BJ463768 BJ463768 K. Sato unpublished cDNA li... 135 6e-031
gb|CD663459.1|CD663459 UCRHV18_05cc01_b1 Drought-stressed D... 110 1e-030
gb|BI778179.2|BI778179 EBro07_SQ002_H05_R root, 3 week, red... 131 1e-030
gb|BI957606.1|BI957606 HVSMEn0010F15f Hordeum vulgare rachi... 65 2e-030
gb|BE215581.1|BE215581 HV_CEb0008D04f Hordeum vulgare seedl... 123 5e-030
gb|CD663190.1|CD663190 UCRHV18_04cf12_b1 Drought-stressed D... 102 5e-030
gb|CV060228.1|CV060228 BNEL55g8 Barley EST endosperm librar... 126 7e-030
gb|BQ765268.1|BQ765268 EBro03_SQ006_N17_R root, 3 week, wat... 96 7e-030
gb|BF257695.2|BF257695 HVSMEf0013J23f Hordeum vulgare seedl... 129 3e-029
gb|CD663904.1|CD663904 UCRHV18_07ab10_b1 Drought-stressed D... 101 7e-029
gb|AL504415.1|AL504415 AL504415 Hordeum vulgare Barke roots... 93 9e-029
gb|AV927324.1|AV927324 AV927324 K. Sato unpublished cDNA li... 98 2e-028
gb|BF254372.2|BF254372 HVSMEf0003M21f Hordeum vulgare seedl... 100 2e-028
gb|BF253494.2|BF253494 HVSMEf0001B12f Hordeum vulgare seedl... 83 3e-028
gb|BI958645.1|BI958645 HVSMEn0016A21f Hordeum vulgare rachi... 65 4e-028
gb|CB879533.1|CB879533 HP02J21w HP Hordeum vulgare subsp. v... 100 4e-028
gb|BG344915.2|BG344915 HVSMEg0016N12f Hordeum vulgare pre-a... 65 6e-028
gb|AV917949.1|AV917949 AV917949 K. Sato unpublished cDNA li... 121 9e-027
gb|CD662527.1|CD662527 UCRHV18_02ba04_b1 Drought-stressed D... 92 1e-026
gb|BG418608.1|BG418608 HVSMEk0023H12f Hordeum vulgare testa... 88 2e-026
gb|BI959987.1|BI959987 HVSMEn0022M02f Hordeum vulgare rachi... 65 3e-025
gb|AL504432.1|AL504432 AL504432 Hordeum vulgare Barke roots... 112 3e-025
gb|BF255884.2|BF255884 HVSMEf0008B14f Hordeum vulgare seedl... 82 6e-025
gb|BF259032.2|BF259032 HVSMEf0017H09f Hordeum vulgare seedl... 114 1e-024
gb|CV055785.1|CV055785 BNEL123d8 Barley EST endosperm libra... 101 2e-024
gb|AL501392.1|AL501392 AL501392 Hordeum vulgare Barke roots... 111 1e-023
gb|AV918876.1|AV918876 AV918876 K. Sato unpublished cDNA li... 110 2e-023
gb|AL450686.1|AL450686 AL450686 Hordeum vulgare Barke etiol... 109 3e-023
gb|CD663222.1|CD663222 UCRHV18_04db05_b1 Drought-stressed D... 109 5e-023
gb|BQ662094.1|BQ662094 HR01I14u HR Hordeum vulgare subsp. v... 108 6e-023
gb|AV930928.1|AV930928 AV930928 K. Sato unpublished cDNA li... 82 9e-023
gb|BF253643.2|BF253643 HVSMEf0001L12f Hordeum vulgare seedl... 82 9e-023
gb|AV930495.1|AV930495 AV930495 K. Sato unpublished cDNA li... 78 1e-022
gb|AL502790.1|AL502790 AL502790 Hordeum vulgare Barke roots... 106 2e-022
gb|BF260237.3|BF260237 HVSMEf0021H13f Hordeum vulgare seedl... 95 4e-022
gb|BF260366.2|BF260366 HVSMEf0021M22f Hordeum vulgare seedl... 48 5e-022
gb|BF253960.2|BF253960 HVSMEf0002J18f Hordeum vulgare seedl... 79 6e-022
gb|AL502883.1|AL502883 AL502883 Hordeum vulgare Barke roots... 104 2e-021
gb|BI949030.1|BI949030 HVSMEl0012B14f Hordeum vulgare spike... 54 3e-021
gb|AL505819.1|AL505819 AL505819 Hordeum vulgare Barke roots... 99 7e-021
>gb|BF259471.1|BF259471 HVSMEf0019D06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019D06f, mRNA sequence
Length = 587
Score = 238 bits (514), Expect = 6e-062
Identities = 97/179 (54%), Positives = 128/179 (71%)
Frame = -1 / +1
Query: 805 DDVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCS 626
D N +N M +DS FLM I++RECG+ F GI+SL+DV AFP +KC+
Sbjct: 49 DSYNQSINNAMVSDSNFLMDIIMRECGDVFVGINSLIDVAGGHGGAARAIAKAFPQMKCT 228
Query: 625 VLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAIS 446
VLDLPHVVA AP++ +V F++G+MF+ IPPA A+FLK HDWGD++CVKILK CK+AI
Sbjct: 229 VLDLPHVVAEAPTNDHVSFISGDMFKYIPPADALFLKWVFHDWGDEDCVKILKKCKEAIP 408
Query: 445 PRDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKD 269
PRDAGGKVII+++VVG I +ETQV DL++M + GVER+E E K +F +AGF +
Sbjct: 409 PRDAGGKVIIVNMVVGSGPDEIVTRETQVXCDLFIMFLGGVEREEFEVKNLFMQAGFTE 585
Score = 125 bits (268), Expect(2) = 2e-034
Identities = 64/128 (50%), Positives = 72/128 (56%)
Frame = +3 / -1
Query: 399 PTTTSKIITFPPASRGDMACLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCT 578
PTT IITFPPAS G +A L FF+ILT SSSPQS + R A AGG+ NI P N T
Sbjct: 455 PTTMFTIITFPPASLGGIASLHFFSILTQSSSPQSWKTHFRXRASAGGMYLNISPEINDT 276
Query: 579 LPSDGAPATTCGRSSTLHLRWGKXXXXXXXXXXXXXXTSTNESIPRNVSPHSLSTIGMRK 758
GA ATT GRS+T+H G TS +E IP N SPHSL I MRK
Sbjct: 275 WSLVGASATT*GRSNTVHFICGNAFAIALAAPPWPPATSISEFIPTNTSPHSLMMISMRK 96
Query: 759 RLSAAMPL 782
LS + L
Sbjct: 95 LLSETIAL 72
Score = 119 bits (254), Expect = 4e-026
Identities = 50/129 (38%), Positives = 76/129 (58%)
Frame = +2 / -3
Query: 398 SNYHIQDYYLPTCIPWRYGLLAILQYLDTLIVTPVM*SFLEENSGCRWNTLKHIACDELH 577
SN+H+ DY+ PT I R LLA YLDT+ +TP+M + L+E S RWN L+HIA ++ H
Sbjct: 456 SNHHVYDYHFPTSISGRDSLLAFF*YLDTVFITPIMENPLQEXSIRRWNVLEHIARNKRH 277
Query: 578 VAIRRSTGDNVREVKHAALEVXXXXXXXXXXATMATTDVNQRVDPTKRLAALPQHNWHEE 757
+ + S +N+RE++H A + +TMA +D+N+RV K + P + HE+
Sbjct: 276 MVVSGSFCNNMREIQHCAFHLRECLRNCPGSSTMAPSDINKRVYTNKYITTFPHDDIHEK 97
Query: 758 AAVRGHAFV 784
+R H V
Sbjct: 96 VTIRNHRIV 70
Score = 40.9 bits (83), Expect(2) = 2e-034
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +3 / -1
Query: 270 SLNPASVKIFFHSCSSRSTPLTAIIYKSNITCVS 371
S+NPA + FF S SSRSTP +I +S TCVS
Sbjct: 584 SVNPACMNKFFTSNSSRSTPPRNMINRSQXTCVS 483
>gb|AW982411.2|AW982411 HVSMEg0003D05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003D05f, mRNA sequence
Length = 1041
Score = 217 bits (469), Expect(2) = 8e-058
Identities = 87/154 (56%), Positives = 111/154 (72%)
Frame = -1 / +3
Query: 820 IWEHADDVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFP 641
I H N ++N MA+DSRFLM I +RECG F GI SLVDV +FP
Sbjct: 270 IAHHNAAFNTIVNDAMASDSRFLMDIAIRECGSVFEGIGSLVDVAGGHGGAAQAISKSFP 449
Query: 640 HLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNC 461
H+KCSV+DL HV+AGAPS +VQ++AG+MFESIP A VFLK +HDW DD+C+KILKNC
Sbjct: 450 HIKCSVMDLGHVIAGAPSGTDVQYIAGDMFESIPQADVVFLKWIMHDWSDDDCIKILKNC 629
Query: 460 KQAISPRDAGGKVIILDVVVGYKQSNIKHQETQV 359
+AI+P+DAGGKVII+++VVG ++KH+ET V
Sbjct: 630 NKAIAPKDAGGKVIIVNMVVGGSPQDLKHKETPV 731
Score = 115 bits (245), Expect = 8e-025
Identities = 52/132 (39%), Positives = 76/132 (57%)
Frame = +2 / -2
Query: 401 NYHIQDYYLPTCIPWRYGLLAILQYLDTLIVTPVM*SFLEENSGCRWNTLKHIACDELHV 580
N+H+ +Y+L I W +AI Y D +IV P+M + L +++ C WN LKH+A + LHV
Sbjct: 689 NHHVYNYHLSASIFWSDSFIAIF*YFDAVIVAPIMHNPL*KDNICLWNALKHVARNVLHV 510
Query: 581 AIRRSTGDNVREVKHAALEVXXXXXXXXXXATMATTDVNQRVDPTKRLAALPQHNWHEEA 760
RS G+++ EV HAAL+V TMA+ +V+Q + AALP + HEE
Sbjct: 509 GATRSPGNDMAEVHHAALDVRERFRYCLCRPTMASGNVDQGAYTLEDAAALPDGDVHEEP 330
Query: 761 AVRGHAFVQQGV 796
A+ GH + GV
Sbjct: 329 AIGGHGVIDDGV 294
Score = 105 bits (225), Expect(3) = 3e-029
Identities = 55/95 (57%), Positives = 60/95 (63%)
Frame = +3 / -3
Query: 360 TCVS*CFMFDCLYPTTTSKIITFPPASRGDMACLQFFNILTHSSSPQSCRVFLRKTAVAG 539
T VS CF L PTT IITFPPAS G +A LQFF+IL SSS QSC + RKT A
Sbjct: 730 TGVSLCFRSWGLPPTTMFTIITFPPASFGAIALLQFFSILMQSSSLQSCIIHFRKTTSAC 551
Query: 540 GILSNILPATNCTLPSDGAPATTCGRSSTLHLRWG 644
G+LSN+ PA CT GAPA T RS TLHL G
Sbjct: 550 GMLSNMSPAMYCTSVPLGAPAMTWPRSITLHLMCG 446
Score = 39.6 bits (80), Expect(3) = 3e-029
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3 / -3
Query: 690 TSTNESIPRNVSPHSLSTIGMRKRLSAAM 776
TST E IP PHSL + MR RLS AM
Sbjct: 400 TSTREPIPSKTLPHSLMAMSMRNRLSEAM 314
Score = 31.3 bits (62), Expect(2) = 8e-058
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1 / +3
Query: 1123 RLMRVLTVTGIFSVVGQPPAGGGDDSTVHT 1034
RLMRVLTV+G+FSV P V+T
Sbjct: 3 RLMRVLTVSGVFSVQQPSPRDDVQVELVYT 92
Score = 28.1 bits (55), Expect(3) = 3e-029
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / -2
Query: 1082 DAEDARDGEHAHEA 1123
DAEDA D EH H+A
Sbjct: 44 DAEDAGDSEHTHKA 3
>emb|X77467.1|HVOMET H.vulgare L. mRNA for flavonoid 7-O-methyltransferase
Length = 1402
Score = 171 bits (367), Expect(3) = 4e-056
Identities = 72/164 (43%), Positives = 96/164 (58%)
Frame = -1 / +1
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+ N + NK M A S F+ + +REC + F GI SLVDV AFP++KCSV
Sbjct: 625 EFNTVFNKAMGASSEFVAALAVRECRDVFAGIKSLVDVAGGNGTTARTIAEAFPYVKCSV 804
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISP 443
LDLP V+ G S G V+FVAG+M E +PPA AV LK LH+W D +CVKIL C++AIS
Sbjct: 805 LDLPQVIQGISSHGTVEFVAGDMMEFVPPAEAVLLKYVLHNWSDQDCVKILTRCREAISH 984
Query: 442 RDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDE 311
+ GKVII+D VVG I + + + M+ V ++
Sbjct: 985 GEKAGKVIIIDTVVGSPSQQILESQVTMDLSMMMLFNGKVREEQ 1116
Score = 109 bits (232), Expect(2) = 4e-027
Identities = 57/137 (41%), Positives = 70/137 (51%)
Frame = +3 / -3
Query: 399 PTTTSKIITFPPASRGDMACLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCT 578
PTT S IIT P S +MA L NI T S S Q C +LR+TA AGG S + PATN T
Sbjct: 1028 PTTVSMIITLPAFSPWEMASLHRVNIFTQS*SLQLCSTYLRRTASAGGTNSIMSPATNST 849
Query: 579 LPSDGAPATTCGRSSTLHLRWGKXXXXXXXXXXXXXXTSTNESIPRNVSPHSLSTIGMRK 758
+P + P TCGRS+T HL GK TST++ IP N S HS +
Sbjct: 848 VP*EEIPCITCGRSNTEHLT*GKASAMVLAVVPFPPATSTSDFIPANTSLHSRTASAATN 669
Query: 759 RLSAAMPLFSKAFTSSA 809
L A + L + S +
Sbjct: 668 SLLAPIALLNTVLNSES 618
Score = 47.8 bits (98), Expect(3) = 4e-056
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = -1 / +1
Query: 1330 MQESSSQDLLQAHDELLHHSLCFAKSLALAVALDLRIPDAIHHHGAGGA 1184
++ +S+ +LQA EL HS + KS+AL + LRIPD +H +G +
Sbjct: 115 LEANSNGQILQAEAELFCHSFGYLKSMALQSVVKLRIPDVLHRYGGAAS 261
Score = 46.4 bits (95), Expect(3) = 4e-056
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -1 / +1
Query: 1204 HHGAGGATLLQILAETALHPSKLRALRRLMRVLTVTGIFSVVGQPPAGGGDDST 1043
H G A+L ++L+ +HP+KL L RLM++L GIF+ P G + T
Sbjct: 238 HRYGGAASLPELLSTVPIHPNKLPYLPRLMKMLAAAGIFTAEDVPATVGDGEPT 399
Score = 33.1 bits (66), Expect(2) = 4e-027
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +3 / -3
Query: 261 IL*SLNPASVKIFFHSCSSRSTPLTAII 344
IL* LNPAS I CSSR+ PL II
Sbjct: 1163 IL**LNPASRNILCQFCSSRTLPLNNII 1080
>gb|AV836790.1|AV836790 AV836790 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd3c22, mRNA
sequence
Length = 696
Score = 145 bits (311), Expect(3) = 6e-056
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = -1 / -2
Query: 646 FPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILK 467
FPH+KC+VLDLP VVAGAP+ NV FV G+MFESIPPA V LK LHDW D++C+KIL+
Sbjct: 518 FPHVKCTVLDLPRVVAGAPALDNVIFVPGDMFESIPPADTVLLKCILHDWPDEDCIKILR 339
Query: 466 NCKQAISPRDAGGKVIILDVVVG 398
CK+AI RDAGGKVII+D+VVG
Sbjct: 338 QCKKAIPVRDAGGKVIIMDMVVG 270
Score = 100 bits (214), Expect(3) = 1e-031
Identities = 49/82 (59%), Positives = 55/82 (67%)
Frame = +3 / +1
Query: 399 PTTTSKIITFPPASRGDMACLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCT 578
PTT S IITFPPAS MA L +IL SSS QSC++ L KT AGG+ SN+ P T T
Sbjct: 271 PTTISMIITFPPASLTGMAFLH*RSILMQSSSGQSCKMHLSKTVSAGGMDSNMSPGTKIT 450
Query: 579 LPSDGAPATTCGRSSTLHLRWG 644
L GAPATT GRSST+HL G
Sbjct: 451 LSRAGAPATTRGRSSTVHLTCG 516
Score = 76.2 bits (160), Expect(3) = 6e-056
Identities = 28/54 (51%), Positives = 40/54 (74%)
Frame = -1 / -2
Query: 391 QSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
Q +E +V+FD++MM ++G++R+E EW+KIF EAGF DYKI PV G S+I
Sbjct: 257 QQETVSKEAEVLFDVFMMYIDGIQREEHEWRKIFFEAGFSDYKITPVTGIRSII 96
Score = 50.1 bits (103), Expect(3) = 1e-031
Identities = 25/39 (64%), Positives = 26/39 (66%)
Frame = +3 / +1
Query: 255 GRIL*SLNPASVKIFFHSCSSRSTPLTAIIYKSNITCVS 371
G IL*SLNPAS KIF HSCSSR P I+ SN T S
Sbjct: 121 GVIL*SLNPASKKIFLHSCSSRWIPSMYIMKTSNKTSAS 237
Score = 35.9 bits (72), Expect(3) = 6e-056
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1 / -1
Query: 790 LLNKGMAADSRFLMPIVLRECGETFRGIDS 701
L N GMAADS M I+L+EC F + S
Sbjct: 666 LFNAGMAADSHLSMGILLKECNNVFGSMGS 577
Score = 24.4 bits (47), Expect(3) = 1e-031
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3 / +2
Query: 729 HSLSTIGMRKRLSAAMPLFSK 791
HS I M + LSAAMP +K
Sbjct: 605 HSFRRIPMLRWLSAAMPALNK 667
>gb|BM817329.1|BM817329 HC105E06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105E06_T3.ab1 similar to Hexaprenyldihydroxybenzoate
methyltransferase,(S)-scoulerine 9-O-methyltransferase,
mRNA sequence
Length = 885
Score = 152 bits (326), Expect(3) = 5e-054
Identities = 62/102 (60%), Positives = 74/102 (72%)
Frame = -1 / +3
Query: 703 SLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAV 524
SL+DV AFPH+KC+VLDLP VVAGAP+ NV FV G+MFE IPPA V
Sbjct: 294 SLIDVGGAHGTATAIIAKAFPHVKCTVLDLPRVVAGAPAHDNVIFVPGDMFEYIPPADTV 473
Query: 523 FLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVIILDVVVG 398
LK LHDW DD+C+K+L+ CK+AI RDAGGKVII+D+VVG
Sbjct: 474 LLKWILHDWPDDDCIKVLRQCKKAIPARDAGGKVIIMDMVVG 599
Score = 111 bits (238), Expect(3) = 5e-035
Identities = 45/101 (44%), Positives = 67/101 (66%)
Frame = +2 / -2
Query: 398 SNYHIQDYYLPTCIPWRYGLLAILQYLDTLIVTPVM*SFLEENSGCRWNTLKHIACDELH 577
SN+HI DY+LP+ +P R G LA+ QYLD ++V P++ + LE N CRW+ LKH+A +E +
Sbjct: 599 SNHHIHDYHLPSRVPCRDGFLALTQYLDAIVVWPIVQNPLE*NGVCRWDVLKHVARNEDY 420
Query: 578 VAIRRSTGDNVREVKHAALEVXXXXXXXXXXATMATTDVNQ 700
+ + RS+GD+ REV+H AL+V + TDV+Q
Sbjct: 419 IIMGRSSGDDAREVQHGALDVWECLGDDRSSGAVGATDVDQ 297
Score = 100 bits (212), Expect(2) = 4e-021
Identities = 50/102 (49%), Positives = 58/102 (56%)
Frame = +3 / -3
Query: 399 PTTTSKIITFPPASRGDMACLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCT 578
PTT S IITFPPAS MA L + L SSS QSC++ L +T AGG+ SN+ P T T
Sbjct: 598 PTTISMIITFPPASLAGMAFLH*RSTLMQSSSGQSCKIHLSRTVSAGGMYSNMSPGTKIT 419
Query: 579 LPSDGAPATTCGRSSTLHLRWGKXXXXXXXXXXXXXXTSTNE 704
L GAPATT GRSST+HL G TS +E
Sbjct: 418 LSWAGAPATTRGRSSTVHLTCGNALAMIAVAVPWAPPTSISE 293
Score = 65.2 bits (136), Expect(3) = 5e-054
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = -1 / +3
Query: 391 QSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYKIL 257
Q +E +V FD++MM ++G++R+E EW+KIF AGF DYKIL
Sbjct: 612 QQETVSKEAEVXFDVFMMYIDGIQREEHEWRKIFLXAGFSDYKIL 746
Score = 48.7 bits (100), Expect(3) = 5e-035
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = +3 / -3
Query: 258 RIL*SLNPASVKIFFHSCSSRSTPLTAIIYKSNITCVS 371
+IL*SLNPA KIF HSCSSR P I+ SN T S
Sbjct: 745 KIL*SLNPAXKKIFLHSCSSRWIPSMYIMKTSNXTSAS 632
Score = 33.6 bits (67), Expect(3) = 5e-054
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1 / +3
Query: 790 LLNKGMAADSRFLMPIVLRECGETFRGIDS 701
L N MAADS M I+L+EC F I S
Sbjct: 204 LFNASMAADSCLTMGILLKECNNVFGSIGS 293
Score = 26.3 bits (51), Expect(3) = 5e-035
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2 / -2
Query: 749 HEEAAVRGHAFVQQGV 796
H EAAV GHA ++Q V
Sbjct: 245 HSEAAVCGHAGIEQAV 198
Score = 22.1 bits (42), Expect(2) = 4e-021
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2 / -2
Query: 257 *NFVVFESSFSEDXXXXXXXXXNSVNRHHIQIKHNLCLL 373
*N VV + S E+ + V+ HH I+ NL LL
Sbjct: 746 *NLVVAKPSX*ENLPPLMLLSLDPVDVHHEDIEXNLRLL 630
>gb|BF628874.2|BF628874 HVSMEb0009A12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009A12f, mRNA sequence
Length = 875
Score = 210 bits (452), Expect = 2e-053
Identities = 80/125 (64%), Positives = 104/125 (83%)
Frame = -1 / +2
Query: 604 VAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGK 425
+AGAPS +VQ++AG+MFESIP A VFLK +HDW DD+C+KILKNC +AI+P+DAGGK
Sbjct: 5 IAGAPSGTDVQYIAGDMFESIPQADVVFLKWIMHDWSDDDCIKILKNCNKAIAPKDAGGK 184
Query: 424 VIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIG 245
VII+D+VVG ++KH+ETQV+FDLY+M +NG+ERDEQEWKKI AGF D+KI P++G
Sbjct: 185 VIIVDMVVGGGPQDLKHKETQVLFDLYIMLLNGIERDEQEWKKIIMAAGFSDFKITPILG 364
Query: 244 DVSVI 230
S+I
Sbjct: 365 VRSII 379
Score = 144 bits (308), Expect = 2e-033
Identities = 70/116 (60%), Positives = 81/116 (69%)
Frame = +3 / -3
Query: 255 GRIL*SLNPASVKIFFHSCSSRSTPLTAIIYKSNITCVS*CFMFDCLYPTTTSKIITFPP 434
G IL SLNPA++ IFFHSCSSRS PL +++ +SN TCVS CF PTT S IITFPP
Sbjct: 354 GVILKSLNPAAMIIFFHSCSSRSMPLRSMM*RSNKTCVSLCFRSCGPPPTTMSTIITFPP 175
Query: 435 ASRGDMACLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCTLPSDGAPA 602
AS G +A LQFF+IL SSS QSC + RKT A G+LSN+ PA CT GAPA
Sbjct: 174 ASFGAIALLQFFSILMQSSSLQSCIIHFRKTTSACGMLSNMSPAMYCTSVPLGAPA 7
>gb|BU974771.1|BU974771 HB29A24r BC Hordeum vulgare subsp. vulgare cDNA clone HB29A24
5-PRIME, mRNA sequence
Length = 667
Score = 160 bits (343), Expect(3) = 4e-053
Identities = 65/109 (59%), Positives = 80/109 (73%)
Frame = -1 / +3
Query: 601 AGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKV 422
A D N++FVAG+MFESIPPA AV LK LHDWG D+CVKIL+ CK+AI R AGGKV
Sbjct: 192 AADAGDDNLRFVAGDMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAIPARSAGGKV 371
Query: 421 IILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGF 275
II+D+V G + K E + M D++ M NGVERDE EWK+IF++AGF
Sbjct: 372 IIIDMVRGSLLGDKKIAEMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 518
Score = 112 bits (239), Expect(2) = 2e-030
Identities = 58/109 (53%), Positives = 67/109 (61%)
Frame = +3 / -1
Query: 276 NPASVKIFFHSCSSRSTPLTAIIYKSNITCVS*CFMFDCLYPTTTSKIITFPPASRGDMA 455
NPAS KI FHS SSRSTPL I S + +S F+ P T S IITFPPA MA
Sbjct: 517 NPASEKILFHSLSSRSTPLVHIANMSCMASISAIFLSPRRDPLTISMIITFPPALLAGMA 338
Query: 456 CLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCTLPSDGAPA 602
LQ +ILT SS PQSC+ FL +TA AGG+ SN+ PAT L S + A
Sbjct: 337 SLQR*SILTQSSWPQSCKTFLSRTASAGGMDSNMSPATKRRLSSPASAA 191
Score = 59.3 bits (123), Expect(3) = 4e-053
Identities = 25/68 (36%), Positives = 36/68 (52%)
Frame = -1 / +3
Query: 781 KGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVV 602
+GM ADS + +++ + G FRG+ SLVDV AFP +KC+VLD P +
Sbjct: 6 RGMTADSELFLEVIIVDKGRIFRGVTSLVDVGAGNGAGTRVVAKAFPRIKCTVLDRPQSL 185
Query: 601 AGAPSDGN 578
A G+
Sbjct: 186 GQAADAGD 209
Score = 40.9 bits (83), Expect(2) = 2e-030
Identities = 23/66 (34%), Positives = 27/66 (40%)
Frame = +3 / -1
Query: 582 PSDGAPATTCGRSSTLHLRWGKXXXXXXXXXXXXXXTSTNESIPRNVSPHSLSTIGMRKR 761
P+ A GRSST+HL G TST E PR + P S +
Sbjct: 205 PASAAWPRD*GRSSTVHLMRGNALATTRVPAPLPAPTSTREVTPRKMRPLSTIMTSRKSS 26
Query: 762 LSAAMP 779
LSA MP
Sbjct: 25 LSAVMP 8
Score = 28.6 bits (56), Expect(3) = 4e-053
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1 / +3
Query: 274 KDYKILPVIGDVSVI 230
+DYKI+PV+G +SVI
Sbjct: 522 QDYKIMPVLGPLSVI 566
>gb|BJ462654.1|BJ462654 BJ462654 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29l10 5', mRNA sequence
Length = 720
Score = 207 bits (447), Expect = 1e-052
Identities = 83/191 (43%), Positives = 124/191 (64%)
Frame = -1 / +2
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+++++ N+G+AA + +LRECG+ F+G+DSL D A+PH+KC+V
Sbjct: 116 ELDSVCNQGLAAHDNLGIATILRECGDIFKGLDSLTDCCGGDGTTARALVKAYPHIKCTV 295
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISP 443
LDLP VV AP+DG + +VAG++F ++PP+ V LK LH W D++CVKIL C++AI P
Sbjct: 296 LDLPKVVEKAPADGVINYVAGDLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCRKAIPP 475
Query: 442 RDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYK 263
R+ GGKVII+++VVG + + +M L M+ G +RDE W ++F +AGF DYK
Sbjct: 476 REEGGKVIIIEIVVGPSLGPVMFEAQLLMDMLMMVNTRGGQRDENHWCELFKKAGFTDYK 655
Query: 262 ILPVIGDVSVI 230
I+ +G SVI
Sbjct: 656 IVKKLGARSVI 688
>gb|BJ467760.1|BJ467760 BJ467760 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29l10 3', mRNA sequence
Length = 779
Score = 197 bits (425), Expect = 1e-049
Identities = 79/171 (46%), Positives = 112/171 (65%)
Frame = -1 / -2
Query: 742 VLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVA 563
+LRECG+ F+G+DSL D A+PH+KC+VLDLP VV AP+DG + +VA
Sbjct: 733 ILRECGDIFKGLDSLTDCCGGDGTTARALVKAYPHIKCTVLDLPKVVEKAPADGVINYVA 554
Query: 562 GNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVIILDVVVGYKQSN 383
G++F ++PP+ V LK LH W D++CVKIL C++AI PR+ GGKVII+++VVG
Sbjct: 553 GDLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCRKAIPPREEGGKVIIIEIVVGPSLGP 374
Query: 382 IKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
+ + +M L M+ G +RDE W ++F +AGF DYKI+ +G SVI
Sbjct: 373 VMFEAQLLMDMLMMVNTRGGQRDENHWCELFKKAGFTDYKIVKKLGARSVI 221
>gb|BI956571.1|BI956571 HVSMEn0004D06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004D06f, mRNA sequence
Length = 780
Score = 181 bits (389), Expect(2) = 8e-049
Identities = 75/143 (52%), Positives = 95/143 (66%)
Frame = -1 / +3
Query: 820 IWEHADDVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFP 641
I H N ++N MA+DSRFLM I +RECG F GI SLVDV +FP
Sbjct: 288 IAHHNAAFNTIVNDAMASDSRFLMDIAIRECGSVFEGIGSLVDVAGGHGGAAQAISKSFP 467
Query: 640 HLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNC 461
H+KCSV+DL HV+AGAPS +VQ++AG+MFESIP A VFLK +HDW DD+C+KILKNC
Sbjct: 468 HIKCSVMDLGHVIAGAPSGTDVQYIAGDMFESIPQADVVFLKWIMHDWSDDDCIKILKNC 647
Query: 460 KQAISPRDAGGKVIILDVVVGYK 392
+ + GKVII+ VG++
Sbjct: 648 IKLSLQKMLAGKVIIVXWWVGWR 716
Score = 86.3 bits (182), Expect(3) = 6e-025
Identities = 44/87 (50%), Positives = 52/87 (59%)
Frame = +3 / -3
Query: 384 FDCLYPTTTSKIITFPPASRGDMACLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILP 563
F L+PT IITFP + + +QFF+IL SSS QSC + RKT A G+LSN+ P
Sbjct: 724 FGGLHPTHHXTIITFPASIFWSDSFMQFFSILMQSSSLQSCIIHFRKTTSACGMLSNMSP 545
Query: 564 ATNCTLPSDGAPATTCGRSSTLHLRWG 644
A CT GAPA T RS TLHL G
Sbjct: 544 AMYCTSVPLGAPAMTWPRSITLHLMCG 464
Score = 39.6 bits (80), Expect(3) = 6e-025
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3 / -3
Query: 690 TSTNESIPRNVSPHSLSTIGMRKRLSAAM 776
TST E IP PHSL + MR RLS AM
Sbjct: 418 TSTREPIPSKTLPHSLMAMSMRNRLSEAM 332
Score = 37.3 bits (75), Expect(2) = 8e-049
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = -1 / +3
Query: 1141 KLRALRRLMRVLTVTGIFSVVGQPPAGGGDDSTVHT 1034
K+ LRRLMRVLTV+G+FSV P V+T
Sbjct: 3 KICCLRRLMRVLTVSGVFSVQQPSPRDDVQVELVYT 110
Score = 32.2 bits (64), Expect(3) = 6e-025
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2 / -2
Query: 1082 DAEDARDGEHAHEAAKGA 1135
DAEDA D EH H+AA+ A
Sbjct: 62 DAEDAGDSEHTHKAAQAA 9
>gb|CB879734.1|CB879734 HP03H10w HP Hordeum vulgare subsp. vulgare cDNA clone HP03H10
3-PRIME, mRNA sequence
Length = 628
Score = 160 bits (343), Expect(3) = 1e-048
Identities = 65/109 (59%), Positives = 80/109 (73%)
Frame = -1 / -1
Query: 601 AGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKV 422
A D N++FVAG+MFESIPPA AV LK LHDWG D+CVKIL+ CK+AI R AGGKV
Sbjct: 499 AADAGDDNLRFVAGDMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAIPARSAGGKV 320
Query: 421 IILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGF 275
II+D+V G + K E + M D++ M NGVERDE EWK+IF++AGF
Sbjct: 319 IIIDMVRGSLLGDKKIAEMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 173
Score = 112 bits (239), Expect(2) = 5e-027
Identities = 58/109 (53%), Positives = 67/109 (61%)
Frame = +3 / +3
Query: 276 NPASVKIFFHSCSSRSTPLTAIIYKSNITCVS*CFMFDCLYPTTTSKIITFPPASRGDMA 455
NPAS KI FHS SSRSTPL I S + +S F+ P T S IITFPPA MA
Sbjct: 174 NPASEKILFHSLSSRSTPLVHIANMSCMASISAIFLSPRRDPLTISMIITFPPALLAGMA 353
Query: 456 CLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCTLPSDGAPA 602
LQ +ILT SS PQSC+ FL +TA AGG+ SN+ PAT L S + A
Sbjct: 354 SLQR*SILTQSSWPQSCKTFLSRTASAGGMDSNMSPATKRRLSSPASAA 500
Score = 44.1 bits (90), Expect(3) = 1e-048
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = -1 / -1
Query: 724 ETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGN 578
E FRG+ SLVDV AFP +KC+VLD P + A G+
Sbjct: 628 EIFRGVTSLVDVGAGNGAGTRVFAKAFPRIKCTVLDRPQSLGQAADAGD 482
Score = 29.5 bits (58), Expect(2) = 5e-027
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +3 / +3
Query: 582 PSDGAPATTCGRSSTLHLRWGKXXXXXXXXXXXXXXTSTNESIPRNV 722
P+ A GRSST+HL G TST E PR +
Sbjct: 486 PASAAWPRD*GRSSTVHLMRGNALANTRVPAPLPAPTSTREVTPRKI 626
Score = 28.6 bits (56), Expect(3) = 1e-048
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1 / -1
Query: 274 KDYKILPVIGDVSVI 230
+DYKI+PV+G +SVI
Sbjct: 169 QDYKIMPVLGPLSVI 125
>gb|CB877071.1|CB877071 HP03H10T HP Hordeum vulgare subsp. vulgare cDNA clone HP03H10
5-PRIME, mRNA sequence
Length = 587
Score = 160 bits (343), Expect(3) = 5e-048
Identities = 65/109 (59%), Positives = 80/109 (73%)
Frame = -1 / +2
Query: 601 AGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKV 422
A D N++FVAG+MFESIPPA AV LK LHDWG D+CVKIL+ CK+AI R AGGKV
Sbjct: 137 AADAGDDNLRFVAGDMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAIPARSAGGKV 316
Query: 421 IILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGF 275
II+D+V G + K E + M D++ M NGVERDE EWK+IF++AGF
Sbjct: 317 IIIDMVRGSLLGDKKIAEMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 463
Score = 112 bits (239), Expect(2) = 4e-027
Identities = 58/109 (53%), Positives = 67/109 (61%)
Frame = +3 / -3
Query: 276 NPASVKIFFHSCSSRSTPLTAIIYKSNITCVS*CFMFDCLYPTTTSKIITFPPASRGDMA 455
NPAS KI FHS SSRSTPL I S + +S F+ P T S IITFPPA MA
Sbjct: 462 NPASEKILFHSLSSRSTPLVHIANMSCMASISAIFLSPRRDPLTISMIITFPPALLAGMA 283
Query: 456 CLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCTLPSDGAPA 602
LQ +ILT SS PQSC+ FL +TA AGG+ SN+ PAT L S + A
Sbjct: 282 SLQR*SILTQSSWPQSCKTFLSRTASAGGMDSNMSPATKRRLSSPASAA 136
Score = 42.3 bits (86), Expect(3) = 5e-048
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -1 / +2
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGN 578
FRG+ SLVDV AFP +KC+VLD P + A G+
Sbjct: 14 FRGVTSLVDVGAGNGAGTRVVAKAFPRIKCTVLDRPQSLGQAADAGD 154
Score = 29.9 bits (59), Expect(2) = 4e-027
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +3 / -3
Query: 582 PSDGAPATTCGRSSTLHLRWGKXXXXXXXXXXXXXXTSTNESIPRNV 722
P+ A GRSST+HL G TST E PR +
Sbjct: 150 PASAAWPRD*GRSSTVHLMRGNALATTRVPAPLPAPTSTREVTPRKI 10
Score = 28.6 bits (56), Expect(3) = 5e-048
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1 / +2
Query: 274 KDYKILPVIGDVSVI 230
+DYKI+PV+G +SVI
Sbjct: 467 QDYKIMPVLGPLSVI 511
>gb|AV917258.1|AV917258 AV917258 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18c14 5', mRNA sequence
Length = 582
Score = 191 bits (412), Expect = 7e-048
Identities = 77/166 (46%), Positives = 107/166 (64%)
Frame = -1 / +1
Query: 727 GETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFE 548
G+ F+G++SL D A+PH+KC+VLDLP V+ AP DG V +VAG++F
Sbjct: 13 GDIFKGLESLTDCCGGDGTTARALVKAYPHIKCTVLDLPKVIDKAPKDGVVNYVAGDLFH 192
Query: 547 SIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVIILDVVVGYKQSNIKHQE 368
++P + AV LK LH W D++CVKIL CK+AI P D GGK+II+D+V+G I +
Sbjct: 193 TVPSSQAVMLKLVLHFWSDEDCVKILTQCKKAIPPHDEGGKIIIIDIVIGPSLGPIMFEA 372
Query: 367 TQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
+M L M+ GV+R E +W+K+F EAGFKDYKI+ +G VI
Sbjct: 373 QLLMDMLMMVTTRGVQRSENDWRKLFMEAGFKDYKIVRKLGARCVI 510
>gb|AV922427.1|AV922427 AV922427 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18c14 3', mRNA sequence
Length = 530
Score = 191 bits (412), Expect = 7e-048
Identities = 77/166 (46%), Positives = 107/166 (64%)
Frame = -1 / -2
Query: 727 GETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFE 548
G+ F+G++SL D A+PH+KC+VLDLP V+ AP DG V +VAG++F
Sbjct: 529 GDIFKGLESLTDCCGGDGTTARALVKAYPHIKCTVLDLPKVIDKAPKDGVVNYVAGDLFH 350
Query: 547 SIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVIILDVVVGYKQSNIKHQE 368
++P + AV LK LH W D++CVKIL CK+AI P D GGK+II+D+V+G I +
Sbjct: 349 TVPSSQAVMLKLVLHFWSDEDCVKILTQCKKAIPPHDEGGKIIIIDIVIGPSLGPIMFEA 170
Query: 367 TQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
+M L M+ GV+R E +W+K+F EAGFKDYKI+ +G VI
Sbjct: 169 QLLMDMLMMVTTRGVQRSENDWRKLFMEAGFKDYKIVRKLGARCVI 32
>gb|AL503330.1|AL503330 AL503330 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01K22T 5', mRNA sequence
Length = 700
Score = 182 bits (392), Expect(2) = 8e-046
Identities = 74/182 (40%), Positives = 110/182 (60%)
Frame = -1 / +1
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+++AL+ G+ A + ++REC + F+G++SL D A PH+KC+V
Sbjct: 151 ELDALVTDGLEAHDNLGIGTIMRECHDLFKGLESLTDCCGGDGKTARAITKAHPHVKCTV 330
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISP 443
LDLP V+ PSD V +VAG++F ++P A AV LK LH W DD+CVKIL CK AI
Sbjct: 331 LDLPKVIEKTPSDCVVNYVAGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCKNAIPS 510
Query: 442 RDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYK 263
R+ GGKVI++D+VV + + +M L ++ G +R E +W+ +F +AGF DYK
Sbjct: 511 REEGGKVIVIDIVVEPSLGPVMFEAQTLMDMLMLVFTRGRQRSENDWRDLFMKAGFTDYK 690
Query: 262 IL 257
I+
Sbjct: 691 II 696
Score = 22.6 bits (43), Expect(2) = 8e-046
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1 / +1
Query: 901 ALGISAWFRQEQHEPSP 851
ALG++ WF+++ P P
Sbjct: 37 ALGMAEWFKKDVTGPVP 87
>gb|AV916317.1|AV916317 AV916317 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12j23 5', mRNA sequence
Length = 585
Score = 183 bits (395), Expect = 2e-045
Identities = 72/170 (42%), Positives = 109/170 (64%)
Frame = -1 / +2
Query: 799 VNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVL 620
++++ N+G+AA + +LRECG+ F+G+DSL D A+PH+KC+VL
Sbjct: 74 LDSVCNQGLAAHDNLGIATILRECGDIFKGLDSLTDCCGGDGTTARALVKAYPHIKCTVL 253
Query: 619 DLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPR 440
DLP VV AP+DG + +VAG++F ++PP+ V LK LH W D++CVKIL C++AI PR
Sbjct: 254 DLPKVVEKAPADGVINYVAGDLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCRKAIPPR 433
Query: 439 DAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIF 290
+ GGKVII+++VVG + + +M L M+ G +RDE W ++F
Sbjct: 434 EEGGKVIIIEIVVGPSLGPVMFEAQLLMDMLMMVNTRGGQRDENHWCELF 583
>gb|BM817346.1|BM817346 HC111F01_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111F01_T3.ab1 similar to Hexaprenyldihydroxybenzoate
methyltransferase,Apigenin
4'-O-methyltransferase,[Myelin basic protein]-arginine
N-methyltransferase,Catechol
O-methyltransferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 905
Score = 182 bits (391), Expect = 6e-045
Identities = 74/182 (40%), Positives = 111/182 (60%)
Frame = -1 / +3
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+++ L+ +G+AA + ++REC + F+G++SL D A PH+KC+V
Sbjct: 174 ELDELVTEGLAAHDNLGIGTIMRECHDLFKGLESLTDCCGGDGTTARAITKAHPHVKCTV 353
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISP 443
LDLP V+ APSDG V VAG++F S+P + AV LK LH W D++CVKIL C+ AI
Sbjct: 354 LDLPKVIDKAPSDGIVNCVAGDLFHSVPKSQAVMLKLVLHHWSDEDCVKILSQCRDAIPS 533
Query: 442 RDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYK 263
+ GGKVII+D+VVG + + +M L ++ +R E +W ++F +AGF DYK
Sbjct: 534 HEEGGKVIIIDIVVGPSLXPVMFEAQLLMDMLMLVNTKSRQRTENDWHELFMKAGFSDYK 713
Query: 262 IL 257
I+
Sbjct: 714 IV 719
>gb|BI778623.2|BI778623 EBro07_SQ003_N10_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_N10 5', mRNA sequence
Length = 604
Score = 182 bits (391), Expect = 6e-045
Identities = 71/167 (42%), Positives = 107/167 (64%)
Frame = -1 / +2
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+++++ N+G+AA + +LRECG+ F+G+DSL D A+PH+KC+V
Sbjct: 95 ELDSVCNQGLAAHDNLGIATILRECGDIFKGLDSLTDCCGGDGTTARALVKAYPHIKCTV 274
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISP 443
LDLP VV AP+DG + +VAG++F ++PP+ V LK LH W D++CVKIL C++AI P
Sbjct: 275 LDLPKVVEKAPADGVINYVAGDLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCRKAIPP 454
Query: 442 RDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEW 302
R+ GGKVII+++VVG + + +M L M+ G +RDE W
Sbjct: 455 REEGGKVIIIEIVVGPSLXPVMFEAQLLMDMLMMVNTRGGQRDENHW 595
>gb|BG343272.2|BG343272 HVSMEg0005E13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005E13f, mRNA sequence
Length = 992
Score = 104 bits (222), Expect(3) = 2e-044
Identities = 44/94 (46%), Positives = 56/94 (59%)
Frame = -1 / +2
Query: 820 IWEHADDVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFP 641
I H N ++N MA+DSR LM I +RECG F GI SL DV +FP
Sbjct: 512 IAHHNAAFNTIVNDAMASDSRXLMDIAIRECGSVFEGIXSLXDVAGSHGWAAQAISKSFP 691
Query: 640 HLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
H+KCSV+D HV+A APS +VQ++AG + ES P
Sbjct: 692 HIKCSVMDPRHVIARAPSGTDVQYIAGELVESXP 793
Score = 65.2 bits (136), Expect(3) = 2e-044
Identities = 31/57 (54%), Positives = 35/57 (61%)
Frame = -1 / +2
Query: 1204 HHGAGGATLLQILAETALHPSKLRALRRLMRVLTVTGIFSVVGQPPAGGGDDSTVHT 1034
HH G ATL QI A LHPSK+ LRRLMRVLTV+G+FSV P V+T
Sbjct: 164 HHHGGAATLSQIGAVATLHPSKICCLRRLMRVLTVSGVFSVQQPSPRDDVQVELVYT 334
Score = 55.1 bits (114), Expect(3) = 2e-044
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = -1 / +2
Query: 1342 MALIMQESSSQDLLQAHDELLHHSLCFAKSLALAVALDLRIPDAIHHHG 1196
M L ++ + Q LL A EL H S + KS+AL LDL I DAIHHHG
Sbjct: 29 MVLTREQRTDQGLLDAQLELWHISFGYVKSMALKSCLDLGIADAIHHHG 175
>gb|BJ449787.1|BJ449787 BJ449787 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26l07 5', mRNA sequence
Length = 609
Score = 149 bits (320), Expect(3) = 4e-044
Identities = 61/109 (55%), Positives = 80/109 (73%)
Frame = -1 / +1
Query: 595 APSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVII 416
A D + FVAG+MF+SIP A AV LK LHDWG D+CVKILK CK+AI R+AGGKVII
Sbjct: 121 AAGDDILSFVAGDMFQSIPSADAVLLKNILHDWGHDDCVKILKCCKEAIPARNAGGKVII 300
Query: 415 LDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKD 269
+D+V G + K E + + +L+MM + G+ER+E EWK+IF++AGF D
Sbjct: 301 IDMVRGSANGDRKINEMEAIQNLFMMYITGIERNEIEWKRIFSDAGFSD 447
Score = 40.0 bits (81), Expect(3) = 4e-044
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1 / +1
Query: 703 SLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVV 602
SLVDV AFP +KC+V+DLPHVV
Sbjct: 4 SLVDVGGGNGAGTQVIAKAFPRIKCTVMDLPHVV 105
Score = 28.1 bits (55), Expect(3) = 4e-044
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -1 / +1
Query: 271 DYKILPVIGDVSVI 230
DYKILPV+G SVI
Sbjct: 448 DYKILPVLGPYSVI 489
>gb|CD662493.1|CD662493 UCRHV18_01ch06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01ch06, mRNA sequence
Length = 865
Score = 151 bits (325), Expect(2) = 6e-044
Identities = 59/129 (45%), Positives = 83/129 (64%)
Frame = -1 / -1
Query: 784 NKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHV 605
++ +AA + +LREC + F+G+ SL D AFPH+KC+VLDLP V
Sbjct: 862 HEALAAHDHLGIGTILRECHDLFKGVQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLPKV 683
Query: 604 VAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGK 425
+ PSDG V +VAG++F +IPPA + LK LH W D++C+ IL CK+AI R+ GGK
Sbjct: 682 IEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILAQCKKAIPSREMGGK 503
Query: 424 VIILDVVVG 398
VI++D+VVG
Sbjct: 502 VIVIDIVVG 476
Score = 90.9 bits (192), Expect(2) = 7e-021
Identities = 52/120 (43%), Positives = 60/120 (50%)
Frame = +3 / +3
Query: 399 PTTTSKIITFPPASRGDMACLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCT 578
PTT S ITFPP SR MA L IL SSS Q CR L AGGI N PAT T
Sbjct: 477 PTTISMTITFPPISRDGMAFLH*ARILMQSSSLQKCRTSLSMRT*AGGIAWNRSPAT*LT 656
Query: 579 LPSDGAPATTCGRSSTLHLRWGKXXXXXXXXXXXXXXTSTNESIPRNVSPHSLSTIGMRK 758
+PS G + T GRS+TLHL GK S ++ P N S HS + + + K
Sbjct: 657 IPSLGTFSITFGRSNTLHLICGKALTMALAVVPSPPQQSVSDWTPLNKSWHSRNIVPIPK 836
Score = 46.9 bits (96), Expect(2) = 6e-044
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -1 / -1
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L ++ G +RDE +W IFT+AGF YKI+ +G VI
Sbjct: 430 LMLVCTRGRQRDENDWSTIFTKAGFSGYKIVKKLGPRGVI 311
Score = 30.4 bits (60), Expect(2) = 7e-021
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = +3 / +3
Query: 261 IL*SLNPASVKIFFHSCSSRSTPL 332
IL* LNPA VKI S SSR PL
Sbjct: 342 IL*PLNPAFVKIVLQSFSSR*RPL 413
>gb|AL503735.1|AL503735 AL503735 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03D24T 5', mRNA sequence
Length = 700
Score = 178 bits (383), Expect = 7e-044
Identities = 73/171 (42%), Positives = 104/171 (60%)
Frame = -1 / +1
Query: 742 VLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVA 563
++REC + F+G++SL D A PH+KC+VLDLP V+ PSD V +VA
Sbjct: 28 IMRECHDLFKGLESLTDCCGGDGKTARAITKAHPHVKCTVLDLPKVIEKTPSDCVVNYVA 207
Query: 562 GNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVIILDVVVGYKQSN 383
G++F ++P A AV LK LH W DD+CVKIL CK AI R+ GGKVI++D+VV
Sbjct: 208 GDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCKNAIPSREEGGKVIVIDIVVEPSLGP 387
Query: 382 IKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
+ + +M L ++ G +R E +W+ +F +AGF DYKI+ +G VI
Sbjct: 388 VMFEAQTLMDMLMLVFTRGRQRSENDWRDLFMKAGFTDYKIIKKMGARGVI 540
>gb|CB879386.1|CB879386 HP02A07w HP Hordeum vulgare subsp. vulgare cDNA clone HP02A07
3-PRIME, mRNA sequence
Length = 539
Score = 153 bits (329), Expect(2) = 3e-043
Identities = 60/131 (45%), Positives = 84/131 (64%)
Frame = -1 / -2
Query: 790 LLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLP 611
L ++ +AA + +LREC + F+G+ SL D AFPH+KC+VLDLP
Sbjct: 538 LFHEALAAHDHLGIGTILRECHDLFKGVQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLP 359
Query: 610 HVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAG 431
V+ PSDG V +VAG++F +IPPA + LK LH W D++C+ IL CK+AI R+ G
Sbjct: 358 KVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILAQCKKAIPSREMG 179
Query: 430 GKVIILDVVVG 398
GKVI++D+VVG
Sbjct: 178 GKVIVIDIVVG 146
Score = 90.9 bits (192), Expect(2) = 7e-021
Identities = 52/120 (43%), Positives = 60/120 (50%)
Frame = +3 / +3
Query: 399 PTTTSKIITFPPASRGDMACLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCT 578
PTT S ITFPP SR MA L IL SSS Q CR L AGGI N PAT T
Sbjct: 147 PTTISMTITFPPISRDGMAFLH*ARILMQSSSLQKCRTSLSMRT*AGGIAWNRSPAT*LT 326
Query: 579 LPSDGAPATTCGRSSTLHLRWGKXXXXXXXXXXXXXXTSTNESIPRNVSPHSLSTIGMRK 758
+PS G + T GRS+TLHL GK S ++ P N S HS + + + K
Sbjct: 327 IPSLGTFSITFGRSNTLHLICGKALTMALAVVPSPPQQSVSDWTPLNKSWHSRNIVPIPK 506
Score = 42.8 bits (87), Expect(2) = 3e-043
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1 / -2
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKIL 257
L ++ G +RDE +W IFT+AGF YKI+
Sbjct: 100 LMLVCTRGRQRDENDWSTIFTKAGFSGYKIV 8
Score = 30.4 bits (60), Expect(2) = 7e-021
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = +3 / +3
Query: 261 IL*SLNPASVKIFFHSCSSRSTPL 332
IL* LNPA VKI S SSR PL
Sbjct: 12 IL*PLNPAFVKIVLQSFSSR*RPL 83
>gb|BF253847.2|BF253847 HVSMEf0002E15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002E15f, mRNA sequence
Length = 822
Score = 174 bits (374), Expect = 1e-042
Identities = 70/167 (41%), Positives = 105/167 (62%)
Frame = -1 / +1
Query: 805 DDVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCS 626
++ +A+ N+G+AA + +LRECG+ F+G++SL D A+PH+KC+
Sbjct: 40 EEFDAVANEGLAAHDNLGIATILRECGDIFKGLESLTDCCGGDGTTARALVKAYPHIKCT 219
Query: 625 VLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAIS 446
VLDLP V+ AP DG V +VAG++F ++P + AV LK LH W D++CVKIL CK+AI
Sbjct: 220 VLDLPKVIDKAPKDGVVNYVAGDLFHTVPSSQAVMLKLVLHFWSDEDCVKILTQCKKAIP 399
Query: 445 PRDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQE 305
D GGK+II+D+V+G I + +M+ L M GV+R+E +
Sbjct: 400 AHDEGGKIIIIDIVIGPYLGPIM*EAQLLMYMLMMETAKGVQRNEND 540
>gb|BF259348.2|BF259348 HVSMEf0019F16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019F16f, mRNA sequence
Length = 574
Score = 149 bits (319), Expect(2) = 4e-042
Identities = 63/141 (44%), Positives = 84/141 (59%)
Frame = -1 / +3
Query: 790 LLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLP 611
L + +AA + VLREC F G+ SL D AFPH+KC+VLDLP
Sbjct: 6 LFYEALAAHDHMGIGTVLRECRGLFDGLQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLP 185
Query: 610 HVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAG 431
V+ PSDG V +VAG++ ++PPA AV LK LH W D++C+ IL CK+AI R+ G
Sbjct: 186 KVIDKVPSDGVVNYVAGDLLHTVPPAQAVMLKLVLHFWSDEDCINILAQCKKAIPSREMG 365
Query: 430 GKVIILDVVVGYKQSNIKHQE 368
GKVII+D+V+G + I E
Sbjct: 366 GKVIIIDIVLGSSLATITETE 428
Score = 43.7 bits (89), Expect(2) = 4e-042
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -1 / +3
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L + G +R+E+EW +F +AGF DY+I+ +G VI
Sbjct: 444 LMFICTRGRQRNEKEWSMLFMKAGFSDYEIIKKLGHRGVI 563
>gb|AV921748.1|AV921748 AV921748 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12j23 3', mRNA sequence
Length = 659
Score = 171 bits (367), Expect = 1e-041
Identities = 67/139 (48%), Positives = 96/139 (69%)
Frame = -1 / -1
Query: 646 FPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILK 467
+PH+KC+VLDLP VV AP+DG + +VAG++F ++PP+ V LK LH W D++CVKIL
Sbjct: 659 YPHIKCTVLDLPKVVEKAPADGVINYVAGDLFHTVPPSQVVMLKLVLHFWSDEDCVKILA 480
Query: 466 NCKQAISPRDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFT 287
C++AI PR+ GGKVII+++VVG + + +M L M+ G +RDE W ++F
Sbjct: 479 QCRKAIPPREEGGKVIIIEIVVGPSLGPVMFEAQLLMDMLMMVNTRGGQRDENHWCELFK 300
Query: 286 EAGFKDYKILPVIGDVSVI 230
+AGF DYKI+ +G SVI
Sbjct: 299 KAGFTDYKIVKKLGARSVI 243
>gb|BJ468231.1|BJ468231 BJ468231 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m03 3', mRNA sequence
Length = 626
Score = 171 bits (367), Expect = 1e-041
Identities = 67/139 (48%), Positives = 96/139 (69%)
Frame = -1 / -3
Query: 646 FPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILK 467
+PH+KC+VLDLP VV AP+DG + +VAG++F ++PP+ V LK LH W D++CVKIL
Sbjct: 624 YPHIKCTVLDLPKVVEKAPADGVINYVAGDLFHTVPPSQVVMLKLVLHFWSDEDCVKILA 445
Query: 466 NCKQAISPRDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFT 287
C++AI PR+ GGKVII+++VVG + + +M L M+ G +RDE W ++F
Sbjct: 444 QCRKAIPPREEGGKVIIIEIVVGPSLGPVMFEAQLLMDMLMMVNTRGGQRDENHWCELFK 265
Query: 286 EAGFKDYKILPVIGDVSVI 230
+AGF DYKI+ +G SVI
Sbjct: 264 KAGFTDYKIVKKLGARSVI 208
>gb|BJ457207.1|BJ457207 BJ457207 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26l07 3', mRNA sequence
Length = 565
Score = 148 bits (317), Expect(3) = 1e-040
Identities = 61/109 (55%), Positives = 79/109 (72%)
Frame = -1 / -3
Query: 595 APSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVII 416
A D + FVAG+MF+SIP A AV LK LHDWG D+CVKILK CK+AI R+AGGKVII
Sbjct: 467 AAGDDILSFVAGDMFQSIPSADAVLLKNILHDWGHDDCVKILKCCKEAIPARNAGGKVII 288
Query: 415 LDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKD 269
+D+V G + K E + + +L+MM + G+ER+E EWK IF++AGF D
Sbjct: 287 IDMVRGSANGDRKINEMEAIQNLFMMYITGIERNEIEWKXIFSDAGFSD 141
Score = 34.5 bits (69), Expect(3) = 1e-040
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / -3
Query: 646 FPHLKCSVLDLPHVV 602
FP +KC+V+DLPHVV
Sbjct: 527 FPRIKCTVMDLPHVV 483
Score = 23.1 bits (44), Expect(3) = 1e-040
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1 / -3
Query: 271 DYKILPVIGDVSVI 230
DY I PV+G SVI
Sbjct: 140 DYXIXPVLGPYSVI 99
>gb|BF264626.3|BF264626 HV_CEa0009O22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009O22f, mRNA sequence
Length = 877
Score = 156 bits (335), Expect(2) = 8e-040
Identities = 63/109 (57%), Positives = 79/109 (72%)
Frame = -1 / +1
Query: 601 AGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKV 422
A D N++FVAG+MFESIPPA AV LK LHDWG D+CVKIL+ CK+A+ R AGGKV
Sbjct: 16 AADAGDDNLRFVAGDMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAVPARSAGGKV 195
Query: 421 IILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGF 275
II+D+ G + K E + M D++ M NGVERDE EWK+IF++AGF
Sbjct: 196 IIIDMGRGSLLGDKKIAEMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 342
Score = 107 bits (228), Expect = 2e-022
Identities = 56/110 (50%), Positives = 66/110 (60%)
Frame = +3 / -3
Query: 276 NPASVKIFFHSCSSRSTPLTAIIYKSNITCVS*CFMFDCLYPTTTSKIITFPPASRGDMA 455
NPAS KI FHS SSRSTPL I S + +S F+ P S IITFPPA A
Sbjct: 341 NPASEKILFHSLSSRSTPLVHIANMSCMASISAIFLSPRRDPLPISMIITFPPALLAGTA 162
Query: 456 CLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNILPATNCTLPSDGAPAT 605
LQ +ILT SS PQSC+ FL +TA AGG+ SN+ PAT L S + A+
Sbjct: 161 SLQR*SILTQSSWPQSCKTFLSRTASAGGMDSNMSPATKRRLSSPASAAS 12
Score = 28.6 bits (56), Expect(2) = 8e-040
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1 / +1
Query: 274 KDYKILPVIGDVSVI 230
+DYKI+PV+G +SVI
Sbjct: 346 QDYKIMPVLGPLSVI 390
>gb|BJ468335.1|BJ468335 BJ468335 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38e18 3', mRNA sequence
Length = 744
Score = 156 bits (336), Expect(2) = 8e-040
Identities = 63/138 (45%), Positives = 88/138 (63%)
Frame = -1 / -3
Query: 643 PHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKN 464
PH+KC+VLDLP V+ +DG V +V G++F ++P A AV LK LH W DD+CVKIL
Sbjct: 634 PHIKCTVLDLPKVIDKTSADGIVNYVGGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQ 455
Query: 463 CKQAISPRDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTE 284
CK AI R+ GGKVI++D+VV + + +M L ++ G +R E +W +FT+
Sbjct: 454 CKNAIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDILMLVFTRGRQRSESDWHVLFTK 275
Query: 283 AGFKDYKILPVIGDVSVI 230
AGF DYKI+ +G VI
Sbjct: 274 AGFSDYKIVKRLGARGVI 221
Score = 28.1 bits (55), Expect(2) = 8e-040
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -1 / -2
Query: 742 VLRECGETFRGIDSLVD 692
++REC + F+G++SL D
Sbjct: 734 IIRECHDLFKGLESLTD 684
>gb|AV918157.1|AV918157 AV918157 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20b03 3', mRNA sequence
Length = 676
Score = 151 bits (324), Expect(2) = 2e-039
Identities = 62/135 (45%), Positives = 86/135 (63%)
Frame = -1 / -1
Query: 634 KCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQ 455
KC+VLDLP V+ PSD V +VAG++F ++P A AV LK LH W DD+CVKIL CK
Sbjct: 559 KCTVLDLPKVIEKTPSDCVVNYVAGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCKN 380
Query: 454 AISPRDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGF 275
AI R+ GGKVI++D+VV + + +M L ++ G +R E +W+ +F +AGF
Sbjct: 379 AIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDMLMLVFTRGRQRSENDWRDLFMKAGF 200
Query: 274 KDYKILPVIGDVSVI 230
DYKI+ +G VI
Sbjct: 199 TDYKIIKKMGARGVI 155
Score = 32.2 bits (64), Expect(2) = 2e-039
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1 / -3
Query: 742 VLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLK 632
++REC + F+G++SL D A PH+K
Sbjct: 668 IMRECHDLFKGLESLTDCCGGDGKTARAITKAHPHVK 558
>gb|CD662288.1|CD662288 UCRHV18_01aa10_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01aa10, mRNA sequence
Length = 792
Score = 135 bits (289), Expect(2) = 5e-039
Identities = 52/106 (49%), Positives = 70/106 (66%)
Frame = -1 / -3
Query: 715 RGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPP 536
+G+ SL D AFPH+KC+VLDLP V+ PSDG V +VAG++F +IPP
Sbjct: 790 KGVQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPP 611
Query: 535 ATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVIILDVVVG 398
A + LK LH W D++C+ IL CK+AI R+ GGKVI++D+VVG
Sbjct: 610 AQVLMLKLVLHFWSDEDCINILAQCKKAIPSREMGGKVIVIDIVVG 473
Score = 46.9 bits (96), Expect(2) = 5e-039
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -1 / -3
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L ++ G +RDE +W IFT+AGF YKI+ +G VI
Sbjct: 427 LMLVCTRGRQRDENDWSTIFTKAGFSGYKIVKKLGPRGVI 308
>gb|CD663812.1|CD663812 UCRHV18_06ch08_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06ch08, mRNA sequence
Length = 791
Score = 135 bits (289), Expect(2) = 5e-039
Identities = 52/106 (49%), Positives = 70/106 (66%)
Frame = -1 / -3
Query: 715 RGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPP 536
+G+ SL D AFPH+KC+VLDLP V+ PSDG V +VAG++F +IPP
Sbjct: 789 KGVQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPP 610
Query: 535 ATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVIILDVVVG 398
A + LK LH W D++C+ IL CK+AI R+ GGKVI++D+VVG
Sbjct: 609 AQVLMLKLVLHFWSDEDCINILAQCKKAIPSREMGGKVIVIDIVVG 472
Score = 46.9 bits (96), Expect(2) = 5e-039
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -1 / -3
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L ++ G +RDE +W IFT+AGF YKI+ +G VI
Sbjct: 426 LMLVCTRGRQRDENDWSTIFTKAGFSGYKIVKKLGPRGVI 307
>gb|AV930320.1|AV930320 AV930320 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22a15 3', mRNA sequence
Length = 664
Score = 132 bits (283), Expect(2) = 7e-039
Identities = 53/112 (47%), Positives = 69/112 (61%)
Frame = -1 / -3
Query: 703 SLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAV 524
SL D AFPH+KC+VLDLP V+ PSDG V +VAG++F +IPPA +
Sbjct: 659 SLTDCCGGDGTTARAIVKAFPHIKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVL 480
Query: 523 FLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVIILDVVVGYKQSNIKHQE 368
LK LH W D++C+ IL CK+AI R+ GGKVI++D+VVG I E
Sbjct: 479 MLKLVLHFWSDEDCINILSQCKKAIPSREMGGKVIVIDIVVGSSSKEILETE 324
Score = 49.2 bits (101), Expect(2) = 7e-039
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -1 / -3
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L ++ G +RDE +W IFT+AGF DYKI+ +G +I
Sbjct: 308 LMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGII 189
>gb|AV931831.1|AV931831 AV931831 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26g01 3', mRNA sequence
Length = 680
Score = 131 bits (280), Expect(2) = 2e-038
Identities = 49/93 (52%), Positives = 65/93 (69%)
Frame = -1 / -3
Query: 646 FPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILK 467
FPH+KC+VLDLP V+ PSDG V +VAG++F +IPPA + LK LH W D++C+ IL
Sbjct: 678 FPHIKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILS 499
Query: 466 NCKQAISPRDAGGKVIILDVVVGYKQSNIKHQE 368
CK+AI R+ GGKVI++D+VVG I E
Sbjct: 498 QCKKAIPSREMGGKVIVIDIVVGSSSKEILETE 400
Score = 49.2 bits (101), Expect(2) = 2e-038
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -1 / -3
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L ++ G +RDE +W IFT+AGF DYKI+ +G +I
Sbjct: 384 LMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGII 265
>gb|AV928022.1|AV928022 AV928022 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13k11 3', mRNA sequence
Length = 667
Score = 131 bits (280), Expect(2) = 2e-038
Identities = 49/93 (52%), Positives = 65/93 (69%)
Frame = -1 / -1
Query: 646 FPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILK 467
FPH+KC+VLDLP V+ PSDG V +VAG++F +IPPA + LK LH W D++C+ IL
Sbjct: 667 FPHIKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILS 488
Query: 466 NCKQAISPRDAGGKVIILDVVVGYKQSNIKHQE 368
CK+AI R+ GGKVI++D+VVG I E
Sbjct: 487 QCKKAIPSREMGGKVIVIDIVVGSSSKEILETE 389
Score = 49.2 bits (101), Expect(2) = 2e-038
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -1 / -1
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L ++ G +RDE +W IFT+AGF DYKI+ +G +I
Sbjct: 373 LMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGII 254
>gb|BJ466406.1|BJ466406 BJ466406 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31p18 3', mRNA sequence
Length = 613
Score = 158 bits (340), Expect = 6e-038
Identities = 64/138 (46%), Positives = 89/138 (64%)
Frame = -1 / -2
Query: 643 PHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKN 464
PH+KC+VLDLP V+ PSD V +VAG++F ++P A AV LK LH W DD+CVKIL
Sbjct: 582 PHVKCTVLDLPKVIEKTPSDCVVNYVAGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQ 403
Query: 463 CKQAISPRDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTE 284
CK AI R+ GGKVI++D+VV + + +M L ++ G +R E +W+ +F +
Sbjct: 402 CKNAIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDMLMLVFTRGRQRSENDWRDLFMK 223
Query: 283 AGFKDYKILPVIGDVSVI 230
AGF DYKI+ +G VI
Sbjct: 222 AGFTDYKIIKKMGARGVI 169
>gb|AV929439.1|AV929439 AV929439 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14d20 3', mRNA sequence
Length = 670
Score = 132 bits (282), Expect(2) = 1e-037
Identities = 50/93 (53%), Positives = 67/93 (72%)
Frame = -1 / -3
Query: 646 FPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILK 467
FPH+KC+VLDLP V+ PSDG V +VAG++F ++PPA AV LK LH W D++C+ IL
Sbjct: 662 FPHIKCNVLDLPKVIDKVPSDGVVNYVAGDLFHTVPPAQAVMLKLVLHFWSDEDCINILA 483
Query: 466 NCKQAISPRDAGGKVIILDVVVGYKQSNIKHQE 368
CK+AI R+ GGKVII+D+V+G + I E
Sbjct: 482 QCKKAIPSREMGGKVIIIDIVLGSSLATITETE 384
Score = 45.5 bits (93), Expect(2) = 1e-037
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -1 / -3
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L + G +R+E+EW +F +AGF DYKI+ +G VI
Sbjct: 368 LMFICTRGRQRNEKEWSMLFMKAGFSDYKIIKKLGHRGVI 249
>gb|AV930527.1|AV930527 AV930527 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22o21 3', mRNA sequence
Length = 665
Score = 128 bits (274), Expect(2) = 1e-037
Identities = 48/92 (52%), Positives = 64/92 (69%)
Frame = -1 / -3
Query: 643 PHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKN 464
PH+KC+VLDLP V+ PSDG V +VAG++F +IPPA + LK LH W D++C+ IL
Sbjct: 663 PHIKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILSQ 484
Query: 463 CKQAISPRDAGGKVIILDVVVGYKQSNIKHQE 368
CK+AI R+ GGKVI++D+VVG I E
Sbjct: 483 CKKAIPSREMGGKVIVIDIVVGSSSKEILETE 388
Score = 49.2 bits (101), Expect(2) = 1e-037
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -1 / -3
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L ++ G +RDE +W IFT+AGF DYKI+ +G +I
Sbjct: 372 LMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGII 253
>gb|BQ662115.1|BQ662115 HR01K01u HR Hordeum vulgare subsp. vulgare cDNA clone HR01K01
3-PRIME, mRNA sequence
Length = 528
Score = 132 bits (282), Expect(2) = 1e-037
Identities = 50/93 (53%), Positives = 67/93 (72%)
Frame = -1 / -2
Query: 646 FPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILK 467
FPH+KC+VLDLP V+ PSDG V +VAG++F ++PPA AV LK LH W D++C+ IL
Sbjct: 509 FPHIKCNVLDLPKVIDKVPSDGVVNYVAGDLFHTVPPAQAVMLKLVLHFWSDEDCINILA 330
Query: 466 NCKQAISPRDAGGKVIILDVVVGYKQSNIKHQE 368
CK+AI R+ GGKVII+D+V+G + I E
Sbjct: 329 QCKKAIPSREMGGKVIIIDIVLGSSLATITETE 231
Score = 45.5 bits (93), Expect(2) = 1e-037
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -1 / -2
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L + G +R+E+EW +F +AGF DYKI+ +G VI
Sbjct: 215 LMFICTRGRQRNEKEWSMLFMKAGFSDYKIIKKLGHRGVI 96
>gb|AV921351.1|AV921351 AV921351 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23c06 3', mRNA sequence
Length = 657
Score = 156 bits (336), Expect = 2e-037
Identities = 63/138 (45%), Positives = 88/138 (63%)
Frame = -1 / -2
Query: 643 PHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKN 464
PH+KC+VLDLP V+ +DG V +V G++F ++P A AV LK LH W DD+CVKIL
Sbjct: 635 PHIKCTVLDLPKVIDKTSADGIVNYVGGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQ 456
Query: 463 CKQAISPRDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTE 284
CK AI R+ GGKVI++D+VV + + +M L ++ G +R E +W +FT+
Sbjct: 455 CKNAIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDILMLVFTRGRQRSESDWHVLFTK 276
Query: 283 AGFKDYKILPVIGDVSVI 230
AGF DYKI+ +G VI
Sbjct: 275 AGFSDYKIVKRLGARGVI 222
>gb|BJ468058.1|BJ468058 BJ468058 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30o16 3', mRNA sequence
Length = 674
Score = 156 bits (336), Expect = 2e-037
Identities = 63/138 (45%), Positives = 88/138 (63%)
Frame = -1 / -2
Query: 643 PHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKN 464
PH+KC+VLDLP V+ +DG V +V G++F ++P A AV LK LH W DD+CVKIL
Sbjct: 655 PHIKCTVLDLPKVIDKTSADGIVNYVGGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQ 476
Query: 463 CKQAISPRDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTE 284
CK AI R+ GGKVI++D+VV + + +M L ++ G +R E +W +FT+
Sbjct: 475 CKNAIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDILMLVFTRGRQRSESDWHVLFTK 296
Query: 283 AGFKDYKILPVIGDVSVI 230
AGF DYKI+ +G VI
Sbjct: 295 AGFSDYKIVKRLGARGVI 242
>gb|BJ463550.1|BJ463550 BJ463550 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32h07 5', mRNA sequence
Length = 540
Score = 133 bits (285), Expect(2) = 2e-037
Identities = 54/122 (44%), Positives = 80/122 (65%)
Frame = -1 / +2
Query: 595 APSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVII 416
+PS + +VAG++F ++PP+ V LK LH W D++CVKIL C++AI PR+ GGKVII
Sbjct: 89 SPS*WSXNYVAGDLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCRKAIPPREEGGKVII 268
Query: 415 LDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVS 236
+++VVG + + +M L M+ G +RDE W ++F +AGF DYKI+ +G S
Sbjct: 269 IEIVVGPSLGPVMFEAQLLMDMLMMVNTRGGQRDENHWCELFKKAGFTDYKIVKKLGARS 448
Query: 235 VI 230
VI
Sbjct: 449 VI 454
Score = 43.2 bits (88), Expect(2) = 2e-037
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -1 / +3
Query: 646 FPHLKCSVLDLPHVVAGAPSDG 581
+PH+KC+VLDLP VV AP+DG
Sbjct: 39 YPHIKCTVLDLPKVVEKAPADG 104
>gb|AV930452.1|AV930452 AV930452 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22j14 3', mRNA sequence
Length = 692
Score = 128 bits (275), Expect(2) = 4e-037
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = -1 / -1
Query: 646 FPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILK 467
FPH+KC+VLDLP V+ PSDG V +VAG++F +IPPA + LK LH W D++C+ IL
Sbjct: 689 FPHIKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILA 510
Query: 466 NCKQAISPRDAGGKVIILDVVVG 398
CK+AI R+ GGKVI++D+VVG
Sbjct: 509 QCKKAIPSREMGGKVIVIDIVVG 441
Score = 46.9 bits (96), Expect(2) = 4e-037
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -1 / -1
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L ++ G +RDE +W IFT+AGF YKI+ +G VI
Sbjct: 395 LMLVCTRGRQRDENDWSTIFTKAGFSGYKIVKKLGPRGVI 276
>gb|BQ658222.1|BQ658222 HA05D15u HA Hordeum vulgare subsp. vulgare cDNA clone HA05D15
3-PRIME, mRNA sequence
Length = 509
Score = 111 bits (238), Expect(3) = 8e-037
Identities = 45/68 (66%), Positives = 53/68 (77%)
Frame = -1 / -3
Query: 601 AGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKV 422
A D N++FVAG+MFESIPPA AV LK LHDWG D+CVKIL+ CK+AI R AGGKV
Sbjct: 498 AADAGDDNLRFVAGDMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAIPARSAGGKV 319
Query: 421 IILDVVVG 398
II+D+V G
Sbjct: 318 IIIDMVRG 295
Score = 52.4 bits (108), Expect(3) = 8e-037
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = -1 / -2
Query: 364 QVMFDLYMMAVNGVERDEQEWKKIFTEAGF 275
+ M D++ M NGVERDE EWK+IF++AGF
Sbjct: 262 EAMQDMFAMCTNGVERDESEWKRIFSDAGF 173
Score = 28.6 bits (56), Expect(3) = 8e-037
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1 / -2
Query: 274 KDYKILPVIGDVSVI 230
+DYKI+PV+G +SVI
Sbjct: 169 QDYKIMPVLGPLSVI 125
>gb|AV931697.1|AV931697 AV931697 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23n09 3', mRNA sequence
Length = 672
Score = 125 bits (267), Expect(2) = 1e-036
Identities = 47/91 (51%), Positives = 63/91 (69%)
Frame = -1 / -2
Query: 640 HLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNC 461
H+KC+VLDLP V+ PSDG V +VAG++F +IPPA + LK LH W D++C+ IL C
Sbjct: 671 HIKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILSQC 492
Query: 460 KQAISPRDAGGKVIILDVVVGYKQSNIKHQE 368
K+AI R+ GGKVI++D+VVG I E
Sbjct: 491 KKAIPSREMGGKVIVIDIVVGSSSKEILETE 399
Score = 49.2 bits (101), Expect(2) = 1e-036
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -1 / -2
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L ++ G +RDE +W IFT+AGF DYKI+ +G +I
Sbjct: 383 LMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGII 264
>gb|AV918926.1|AV918926 AV918926 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22l17 3', mRNA sequence
Length = 655
Score = 153 bits (329), Expect = 2e-036
Identities = 62/137 (45%), Positives = 87/137 (63%)
Frame = -1 / -1
Query: 640 HLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNC 461
H+KC+VLDLP V+ +DG V +V G++F ++P A AV LK LH W DD+CVKIL C
Sbjct: 634 HIKCTVLDLPKVIDKTSADGIVNYVGGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQC 455
Query: 460 KQAISPRDAGGKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEA 281
K AI R+ GGKVI++D+VV + + +M L ++ G +R E +W +FT+A
Sbjct: 454 KNAIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDILMLVFTRGRQRSESDWHVLFTKA 275
Query: 280 GFKDYKILPVIGDVSVI 230
GF DYKI+ +G VI
Sbjct: 274 GFSDYKIVKRLGARGVI 224
>gb|CB879142.1|CB879142 HP11B09T HP Hordeum vulgare subsp. vulgare cDNA clone HP11B09
5-PRIME, mRNA sequence
Length = 562
Score = 153 bits (329), Expect = 2e-036
Identities = 60/131 (45%), Positives = 84/131 (64%)
Frame = -1 / +2
Query: 790 LLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLP 611
L ++ +AA + +LREC + F+G+ SL D AFPH+KC+VLDLP
Sbjct: 119 LFHEALAAHDHLGIGTILRECHDLFKGVQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLP 298
Query: 610 HVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAG 431
V+ PSDG V +VAG++F +IPPA + LK LH W D++C+ IL CK+AI R+ G
Sbjct: 299 KVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILAQCKKAIPSREMG 478
Query: 430 GKVIILDVVVG 398
GKVI++D+VVG
Sbjct: 479 GKVIVIDIVVG 511
>gb|AV928262.1|AV928262 AV928262 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27k15 3', mRNA sequence
Length = 728
Score = 127 bits (272), Expect(2) = 3e-036
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = -1 / -2
Query: 646 FPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILK 467
F H+KC+VLDLP V+ PSDG V +VAG++F ++PPA AV LK LH W D++C+ IL
Sbjct: 691 FLHIKCNVLDLPKVIDKVPSDGVVNYVAGDLFHTVPPAQAVMLKLVLHFWSDEDCINILA 512
Query: 466 NCKQAISPRDAGGKVIILDVVVGYKQSNIKHQE 368
CK+AI R+ GGKVII+D+V+G + I E
Sbjct: 511 QCKKAIPSREMGGKVIIIDIVLGSSLATITETE 413
Score = 45.5 bits (93), Expect(2) = 3e-036
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -1 / -2
Query: 349 LYMMAVNGVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
L + G +R+E+EW +F +AGF DYKI+ +G VI
Sbjct: 397 LMFICTRGRQRNEKEWSMLFMKAGFSDYKIIKKLGHRGVI 278
>gb|BQ659524.1|BQ659524 HE01L03u HE Hordeum vulgare subsp. vulgare cDNA clone HE01L03
3-PRIME, mRNA sequence
Length = 533
Score = 144 bits (309), Expect(2) = 3e-036
Identities = 58/95 (61%), Positives = 71/95 (74%)
Frame = -1 / -3
Query: 559 NMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQAISPRDAGGKVIILDVVVGYKQSNI 380
+MFESIPPA AV LK LHDWG D+CVKIL+ CK+AI R AGGKVII+D+V G +
Sbjct: 531 DMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAIPARSAGGKVIIIDMVRGSLLGDK 352
Query: 379 KHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGF 275
K E + M D++ M NGVERDE EWK+IF++AGF
Sbjct: 351 KIAEMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 247
Score = 103 bits (219), Expect = 3e-021
Identities = 52/94 (55%), Positives = 60/94 (63%)
Frame = +3 / +2
Query: 276 NPASVKIFFHSCSSRSTPLTAIIYKSNITCVS*CFMFDCLYPTTTSKIITFPPASRGDMA 455
NPAS KI FHS SSRSTPL I S + +S F+ P T S IITFPPA MA
Sbjct: 248 NPASEKILFHSLSSRSTPLVHIANMSCMASISAIFLSPRRDPLTISMIITFPPALLAGMA 427
Query: 456 CLQFFNILTHSSSPQSCRVFLRKTAVAGGILSNI 557
LQ +ILT SS PQSC+ FL +TA AGG+ SN+
Sbjct: 428 SLQR*SILTQSSWPQSCKTFLSRTASAGGMDSNM 529
Score = 28.6 bits (56), Expect(2) = 3e-036
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1 / -3
Query: 274 KDYKILPVIGDVSVI 230
+DYKI+PV+G +SVI
Sbjct: 243 QDYKIMPVLGPLSVI 199
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 665,228,417
Number of Sequences: 312970
Number of extensions: 10786501
Number of successful extensions: 99434
Number of sequences better than 1.0e-020: 154
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 17677495287
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)