TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067450.2.1
(724 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF259471.1|BF259471 HVSMEf0019D06f Hordeum vulgare seedl... 233 7e-061
gb|BF628874.2|BF628874 HVSMEb0009A12f Hordeum vulgare seedl... 226 8e-059
gb|AV836790.1|AV836790 AV836790 K. Sato unpublished cDNA li... 133 4e-051
gb|AW982411.2|AW982411 HVSMEg0003D05f Hordeum vulgare pre-a... 197 7e-050
gb|BJ462654.1|BJ462654 BJ462654 K. Sato unpublished cDNA li... 188 4e-047
gb|BJ467760.1|BJ467760 BJ467760 K. Sato unpublished cDNA li... 188 4e-047
gb|BM817329.1|BM817329 HC105E06_T3.ab1 HC Hordeum vulgare s... 143 2e-046
gb|AV917258.1|AV917258 AV917258 K. Sato unpublished cDNA li... 181 5e-045
gb|AV922427.1|AV922427 AV922427 K. Sato unpublished cDNA li... 181 5e-045
gb|BJ449787.1|BJ449787 BJ449787 K. Sato unpublished cDNA li... 145 2e-043
gb|BU974771.1|BU974771 HB29A24r BC Hordeum vulgare subsp. v... 146 3e-043
gb|AL503735.1|AL503735 AL503735 Hordeum vulgare Barke roots... 172 1e-042
gb|CB879734.1|CB879734 HP03H10w HP Hordeum vulgare subsp. v... 146 2e-042
gb|CB877071.1|CB877071 HP03H10T HP Hordeum vulgare subsp. v... 146 2e-042
gb|BJ457207.1|BJ457207 BJ457207 K. Sato unpublished cDNA li... 144 4e-042
gb|AV921748.1|AV921748 AV921748 K. Sato unpublished cDNA li... 166 1e-040
gb|BJ468231.1|BJ468231 BJ468231 K. Sato unpublished cDNA li... 166 1e-040
gb|CD662493.1|CD662493 UCRHV18_01ch06_b1 Drought-stressed D... 132 1e-040
gb|AV918157.1|AV918157 AV918157 K. Sato unpublished cDNA li... 153 5e-039
gb|BF259348.2|BF259348 HVSMEf0019F16f Hordeum vulgare seedl... 125 6e-039
gb|BI956571.1|BI956571 HVSMEn0004D06f Hordeum vulgare rachi... 159 1e-038
gb|AV929439.1|AV929439 AV929439 K. Sato unpublished cDNA li... 113 8e-038
gb|AV920383.1|AV920383 AV920383 K. Sato unpublished cDNA li... 113 8e-038
gb|AV928262.1|AV928262 AV928262 K. Sato unpublished cDNA li... 113 1e-037
gb|AL503330.1|AL503330 AL503330 Hordeum vulgare Barke roots... 156 1e-037
gb|BF264626.3|BF264626 HV_CEa0009O22f Hordeum vulgare seedl... 142 3e-037
gb|BQ662115.1|BQ662115 HR01K01u HR Hordeum vulgare subsp. v... 113 3e-037
gb|BJ466406.1|BJ466406 BJ466406 K. Sato unpublished cDNA li... 155 3e-037
gb|AV931831.1|AV931831 AV931831 K. Sato unpublished cDNA li... 114 4e-037
gb|AV931697.1|AV931697 AV931697 K. Sato unpublished cDNA li... 114 4e-037
gb|AV928022.1|AV928022 AV928022 K. Sato unpublished cDNA li... 114 4e-037
gb|AV930320.1|AV930320 AV930320 K. Sato unpublished cDNA li... 114 4e-037
gb|AV930527.1|AV930527 AV930527 K. Sato unpublished cDNA li... 114 4e-037
gb|BJ468335.1|BJ468335 BJ468335 K. Sato unpublished cDNA li... 145 7e-037
gb|AV929534.1|AV929534 AV929534 K. Sato unpublished cDNA li... 153 1e-036
gb|CD662288.1|CD662288 UCRHV18_01aa10_b1 Drought-stressed D... 117 2e-036
gb|CD663812.1|CD663812 UCRHV18_06ch08_b1 Drought-stressed D... 117 2e-036
gb|BJ463550.1|BJ463550 BJ463550 K. Sato unpublished cDNA li... 143 3e-036
gb|AV916317.1|AV916317 AV916317 K. Sato unpublished cDNA li... 149 1e-035
gb|BM817346.1|BM817346 HC111F01_T3.ab1 HC Hordeum vulgare s... 149 1e-035
gb|BJ467944.1|BJ467944 BJ467944 K. Sato unpublished cDNA li... 148 3e-035
gb|BQ659524.1|BQ659524 HE01L03u HE Hordeum vulgare subsp. v... 135 3e-035
gb|BQ658222.1|BQ658222 HA05D15u HA Hordeum vulgare subsp. v... 105 4e-035
gb|AV930452.1|AV930452 AV930452 K. Sato unpublished cDNA li... 113 6e-035
gb|CB879386.1|CB879386 HP02A07w HP Hordeum vulgare subsp. v... 132 6e-035
gb|CD662211.1|CD662211 UCRHV18_01af07_b1 Drought-stressed D... 106 1e-034
gb|AV918926.1|AV918926 AV918926 K. Sato unpublished cDNA li... 145 3e-034
gb|AV921351.1|AV921351 AV921351 K. Sato unpublished cDNA li... 145 3e-034
gb|BJ468058.1|BJ468058 BJ468058 K. Sato unpublished cDNA li... 145 3e-034
gb|AV918077.1|AV918077 AV918077 K. Sato unpublished cDNA li... 143 1e-033
gb|AV918703.1|AV918703 AV918703 K. Sato unpublished cDNA li... 143 1e-033
gb|BJ468232.1|BJ468232 BJ468232 K. Sato unpublished cDNA li... 143 1e-033
gb|AV920613.1|AV920613 AV920613 K. Sato unpublished cDNA li... 143 1e-033
gb|CD663190.1|CD663190 UCRHV18_04cf12_b1 Drought-stressed D... 100 5e-033
gb|CD662527.1|CD662527 UCRHV18_02ba04_b1 Drought-stressed D... 100 5e-033
gb|CD663459.1|CD663459 UCRHV18_05cc01_b1 Drought-stressed D... 106 1e-032
gb|BI778623.2|BI778623 EBro07_SQ003_N10_R root, 3 week, red... 139 1e-032
gb|AV927324.1|AV927324 AV927324 K. Sato unpublished cDNA li... 98 3e-032
gb|BI777619.2|BI777619 EBro08_SQ001_A05_R root, 3 week, dro... 138 4e-032
emb|X77467.1|HVOMET H.vulgare L. mRNA for flavonoid 7-O-met... 137 8e-032
gb|BF254372.2|BF254372 HVSMEf0003M21f Hordeum vulgare seedl... 101 1e-031
gb|CD663904.1|CD663904 UCRHV18_07ab10_b1 Drought-stressed D... 100 4e-031
gb|BF253847.2|BF253847 HVSMEf0002E15f Hordeum vulgare seedl... 133 1e-030
gb|AV928023.1|AV928023 AV928023 K. Sato unpublished cDNA li... 112 1e-030
gb|CB879142.1|CB879142 HP11B09T HP Hordeum vulgare subsp. v... 132 3e-030
gb|AV917949.1|AV917949 AV917949 K. Sato unpublished cDNA li... 130 7e-030
gb|AV930928.1|AV930928 AV930928 K. Sato unpublished cDNA li... 85 2e-029
gb|BF260928.2|BF260928 HVSMEf0023E24f Hordeum vulgare seedl... 127 5e-029
gb|BE215581.1|BE215581 HV_CEb0008D04f Hordeum vulgare seedl... 115 8e-029
gb|BF253960.2|BF253960 HVSMEf0002J18f Hordeum vulgare seedl... 84 1e-028
gb|AV930495.1|AV930495 AV930495 K. Sato unpublished cDNA li... 83 1e-027
gb|BF256054.2|BF256054 HVSMEf0008J16f Hordeum vulgare seedl... 121 4e-027
gb|BF259414.3|BF259414 HVSMEf0019A18f Hordeum vulgare seedl... 120 8e-027
gb|CB879533.1|CB879533 HP02J21w HP Hordeum vulgare subsp. v... 100 1e-026
gb|AL501392.1|AL501392 AL501392 Hordeum vulgare Barke roots... 119 1e-026
gb|AV918876.1|AV918876 AV918876 K. Sato unpublished cDNA li... 119 1e-026
gb|BQ662094.1|BQ662094 HR01I14u HR Hordeum vulgare subsp. v... 117 5e-026
gb|BF257695.2|BF257695 HVSMEf0013J23f Hordeum vulgare seedl... 116 2e-025
gb|AL502790.1|AL502790 AL502790 Hordeum vulgare Barke roots... 115 3e-025
gb|BQ765268.1|BQ765268 EBro03_SQ006_N17_R root, 3 week, wat... 98 4e-025
gb|AL502883.1|AL502883 AL502883 Hordeum vulgare Barke roots... 113 9e-025
gb|AL450686.1|AL450686 AL450686 Hordeum vulgare Barke etiol... 112 2e-024
gb|AV913364.1|AV913364 AV913364 K. Sato unpublished cDNA li... 111 3e-024
gb|AV918663.1|AV918663 AV918663 K. Sato unpublished cDNA li... 111 3e-024
gb|CD663222.1|CD663222 UCRHV18_04db05_b1 Drought-stressed D... 111 3e-024
gb|AL500356.1|AL500356 AL500356 Hordeum vulgare Barke etiol... 71 5e-024
gb|AL504415.1|AL504415 AL504415 Hordeum vulgare Barke roots... 95 5e-024
gb|CD662275.1|CD662275 UCRHV18_01be09_b1 Drought-stressed D... 72 1e-022
gb|AV931170.1|AV931170 AV931170 K. Sato unpublished cDNA li... 73 1e-022
gb|BF253494.2|BF253494 HVSMEf0001B12f Hordeum vulgare seedl... 89 2e-022
gb|BI778179.2|BI778179 EBro07_SQ002_H05_R root, 3 week, red... 105 2e-022
gb|BF255884.2|BF255884 HVSMEf0008B14f Hordeum vulgare seedl... 85 1e-021
gb|BJ463768.1|BJ463768 BJ463768 K. Sato unpublished cDNA li... 103 1e-021
gb|AV920163.1|AV920163 AV920163 K. Sato unpublished cDNA li... 98 2e-021
gb|AV917656.1|AV917656 AV917656 K. Sato unpublished cDNA li... 98 2e-021
gb|BJ466471.1|BJ466471 BJ466471 K. Sato unpublished cDNA li... 98 2e-021
gb|AV930818.1|AV930818 AV930818 K. Sato unpublished cDNA li... 98 2e-021
gb|BJ466778.1|BJ466778 BJ466778 K. Sato unpublished cDNA li... 98 2e-021
gb|BJ466353.1|BJ466353 BJ466353 K. Sato unpublished cDNA li... 98 2e-021
gb|BJ468102.1|BJ468102 BJ468102 K. Sato unpublished cDNA li... 98 2e-021
gb|BI957415.1|BI957415 HVSMEn0009H02f Hordeum vulgare rachi... 102 3e-021
gb|BF260422.2|BF260422 HVSMEf0021P06f Hordeum vulgare seedl... 60 3e-021
gb|AV931161.1|AV931161 AV931161 K. Sato unpublished cDNA li... 65 4e-021
gb|BF260237.3|BF260237 HVSMEf0021H13f Hordeum vulgare seedl... 96 6e-021
>gb|BF259471.1|BF259471 HVSMEf0019D06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019D06f, mRNA sequence
Length = 587
Score = 233 bits (504), Expect = 7e-061
Identities = 93/163 (57%), Positives = 118/163 (72%)
Frame = -2 / +1
Query: 723 FLMDIAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAG 544
FLMDI +RECGDVF GI SL+DV ++CTVLDL HVVA AP
Sbjct: 97 FLMDIIMRECGDVFVGINSLIDVAGGHGGAARAIAKAFPQMKCTVLDLPHVVAEAPTNDH 276
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVG 364
+SF++GDMF+ IPPA+A+FLKW+ HDWGD +CV ILK CK+AIPPRDAGGKVIIV+ VVG
Sbjct: 277 VSFISGDMFKYIPPADALFLKWVFHDWGDEDCVKILKKCKEAIPPRDAGGKVIIVNMVVG 456
Query: 363 AGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSD 235
+GP + +ETQV DLF M + G+ER+E E +N+ +AGF++
Sbjct: 457 SGPDEIVTRETQVXCDLFIMFLGGVEREEFEVKNLFMQAGFTE 585
Score = 122 bits (261), Expect(2) = 3e-032
Identities = 63/121 (52%), Positives = 71/121 (58%)
Frame = +2 / -1
Query: 236 SLKPASKMMFLHSCSSLSRPLTIIKKRSDMTCVSLFLRFGGPAPTTVSTIITLPPASRGG 415
S+ PA F S SS S P + RS TCVSL GP PTT+ TIIT PPAS GG
Sbjct: 584 SVNPACMNKFFTSNSSRSTPPRNMINRSQXTCVSLVTISSGPDPTTMFTIITFPPASLGG 405
Query: 416 IAFLQFFRIVTHSESPQSCMIHLRKTAFAGGMASNMSPATKLSPAQAGAVATTCARSSTV 595
IA L FF I+T S SPQS H R A AGGM N+SP + + GA ATT RS+TV
Sbjct: 404 IASLHFFSILTQSSSPQSWKTHFRXRASAGGMYLNISPEINDTWSLVGASATT*GRSNTV 225
Query: 596 H 598
H
Sbjct: 224 H 222
Score = 35.9 bits (72), Expect(2) = 3e-032
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +2 / -1
Query: 656 TSTRERIP*NTSPHSLTAMSMRK 724
TS E IP NTSPHSL +SMRK
Sbjct: 164 TSISEFIPTNTSPHSLMMISMRK 96
>gb|BF628874.2|BF628874 HVSMEb0009A12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009A12f, mRNA sequence
Length = 875
Score = 226 bits (489), Expect = 8e-059
Identities = 88/130 (67%), Positives = 108/130 (83%)
Frame = -2 / +2
Query: 570 VATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGK 391
+A AP+ + ++AGDMFE+IP A+ VFLKWIMHDW D +C+ ILKNC KAI P+DAGGK
Sbjct: 5 IAGAPSGTDVQYIAGDMFESIPQADVVFLKWIMHDWSDDDCIKILKNCNKAIAPKDAGGK 184
Query: 390 VIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLG 211
VIIVD VVG GP +LK+KETQV+ DL+ M++NG+ERDEQEW+ II AGFSD+ I P+LG
Sbjct: 185 VIIVDMVVGGGPQDLKHKETQVLFDLYIMLLNGIERDEQEWKKIIMAAGFSDFKITPILG 364
Query: 210 VRSIIELYP* 181
VRSIIELYP*
Sbjct: 365 VRSIIELYP* 394
Score = 163 bits (351), Expect = 8e-040
Identities = 76/128 (59%), Positives = 88/128 (68%)
Frame = +2 / -3
Query: 185 GYSSMIDRTPKTGMIM*SLKPASKMMFLHSCSSLSRPLTIIKKRSDMTCVSLFLRFGGPA 364
G SSMIDRTP+ G+I+ SL PA+ ++F HSCSS S PL + RS+ TCVSL R GP
Sbjct: 390 G*SSMIDRTPRIGVILKSLNPAAMIIFFHSCSSRSMPLRSMM*RSNKTCVSLCFRSCGPP 211
Query: 365 PTTVSTIITLPPASRGGIAFLQFFRIVTHSESPQSCMIHLRKTAFAGGMASNMSPATKLS 544
PTT+STIIT PPAS G IA LQFF I+ S S QSC+IH RKT A GM SNMSPA +
Sbjct: 210 PTTMSTIITFPPASFGAIALLQFFSILMQSSSLQSCIIHFRKTTSACGMLSNMSPAMYCT 31
Query: 545 PAQAGAVA 568
GA A
Sbjct: 30 SVPLGAPA 7
Score = 129 bits (277), Expect = 1e-029
Identities = 62/127 (48%), Positives = 82/127 (64%)
Frame = +1 / -2
Query: 181 SGV*LDD*SNT*NWYDYVVTETSFKDDVPPFLLISLKAVDDHKKEIRHDLCLFVLKVWRP 360
S V L+D*S+T N D+ VTE+ D + P LLIS A+++H +I DLCLFVL+V R
Sbjct: 394 SRVKLND*SDTQNRGDFEVTESCRHDYLLPLLLISFDAIEEHDVKIEQDLCLFVLQVLRA 215
Query: 361 CTNHGIYYYHLAACISWRYSFLAVL*NRDTLRVTPVVHDPLEEDSIRWRNGLKHVASNEA 540
TNH +Y YHL+A I W SF+A+ * D + V P++H+PL ED+I N LKHVA N
Sbjct: 214 STNHHVYNYHLSASIFWSDSFIAIF*YFDAVIVAPIMHNPL*EDNICLWNALKHVARNVL 35
Query: 541 EPSASGS 561
A+ S
Sbjct: 34 HVGATRS 14
Score = 118 bits (252), Expect = 4e-026
Identities = 58/119 (48%), Positives = 74/119 (62%)
Frame = -1 / +1
Query: 538 LRCWRHV*GHSASECCLPQVDHARLG*L*VCHDSKELQESYTSTRCRRQGDNSRYRGWCR 359
+ C RHV* HS CCLP+VD+A L *+ ++K+LQ SY S RC R+GDN R+ GW R
Sbjct: 37 VHCGRHV*EHSTGRCCLPKVDYA*LERR*LHQNTKKLQ*SYRSKRCWRKGDNCRHGGWWR 216
Query: 358 ASKP*EQRDTGHV*SLFYDRQRP*ER*AGMEEHHL*SWFQ*LHNHTSFRCSINHRAIPL 182
++P QRDT V SL + Q R*AG+EE + Q*L NH C INH A+P+
Sbjct: 217 PARPEAQRDTSLVRSLHHAPQWHRTR*AGVEEDNHGGRIQ*LQNHPDSGCPINH*ALPV 393
>gb|AV836790.1|AV836790 AV836790 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd3c22, mRNA
sequence
Length = 696
Score = 133 bits (285), Expect(2) = 4e-051
Identities = 54/84 (64%), Positives = 65/84 (77%)
Frame = -2 / -2
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
++CTVLDL VVA APA + FV GDMFE+IPPA+ V LK I+HDW D +C+ IL+ CK
Sbjct: 509 VKCTVLDLPRVVAGAPALDNVIFVPGDMFESIPPADTVLLKCILHDWPDEDCIKILRQCK 330
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPP 352
KAIP RDAGGKVII+D VVG+ P
Sbjct: 329 KAIPVRDAGGKVIIMDMVVGSVGP 258
Score = 106 bits (226), Expect(2) = 2e-034
Identities = 49/82 (59%), Positives = 57/82 (69%)
Frame = +2 / +1
Query: 353 GGPAPTTVSTIITLPPASRGGIAFLQFFRIVTHSESPQSCMIHLRKTAFAGGMASNMSPA 532
G PTT+S IIT PPAS G+AFL I+ S S QSC +HL KT AGGM SNMSP
Sbjct: 259 GPTEPTTISMIITFPPASLTGMAFLH*RSILMQSSSGQSCKMHLSKTVSAGGMDSNMSPG 438
Query: 533 TKLSPAQAGAVATTCARSSTVH 598
TK++ ++AGA ATT RSSTVH
Sbjct: 439 TKITLSRAGAPATTRGRSSTVH 504
Score = 88.1 bits (186), Expect(2) = 4e-051
Identities = 33/54 (61%), Positives = 44/54 (81%)
Frame = -2 / -2
Query: 342 NKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
+KE +V+ D+F M ++G++R+E EWR I FEAGFSDY I PV G+RSIIE+YP*
Sbjct: 242 SKEAEVLFDVFMMYIDGIQREEHEWRKIFFEAGFSDYKITPVTGIRSIIEVYP* 81
Score = 59.3 bits (123), Expect(2) = 2e-034
Identities = 28/51 (54%), Positives = 35/51 (68%)
Frame = +2 / +1
Query: 185 GYSSMIDRTPKTGMIM*SLKPASKMMFLHSCSSLSRPLTIIKKRSDMTCVS 337
G +S+I+R P TG+I+*SL PASK +FLHSCSS P I K S+ T S
Sbjct: 85 G*TSIIERIPVTGVIL*SLNPASKKIFLHSCSSRWIPSMYIMKTSNKTSAS 237
>gb|AW982411.2|AW982411 HVSMEg0003D05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003D05f, mRNA sequence
Length = 1041
Score = 197 bits (424), Expect = 7e-050
Identities = 79/138 (57%), Positives = 97/138 (70%)
Frame = -2 / +3
Query: 723 FLMDIAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAG 544
FLMDIA+RECG VF+GI SLVDV I+C+V+DL HV+A AP+
Sbjct: 333 FLMDIAIRECGSVFEGIGSLVDVAGGHGGAAQAISKSFPHIKCSVMDLGHVIAGAPSGTD 512
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVG 364
+ ++AGDMFE+IP A+ VFLKWIMHDW D +C+ ILKNC KAI P+DAGGKVIIV+ VVG
Sbjct: 513 VQYIAGDMFESIPQADVVFLKWIMHDWSDDDCIKILKNCNKAIAPKDAGGKVIIVNMVVG 692
Query: 363 AGPPNLKNKETQVMSDLF 310
P +LK+KET V F
Sbjct: 693 GSPQDLKHKETPVFGRSF 746
Score = 105 bits (224), Expect(2) = 1e-031
Identities = 52/91 (57%), Positives = 57/91 (62%)
Frame = +2 / -3
Query: 326 TCVSLFLRFGGPAPTTVSTIITLPPASRGGIAFLQFFRIVTHSESPQSCMIHLRKTAFAG 505
T VSL R G PTT+ TIIT PPAS G IA LQFF I+ S S QSC+IH RKT A
Sbjct: 730 TGVSLCFRSWGLPPTTMFTIITFPPASFGAIALLQFFSILMQSSSLQSCIIHFRKTTSAC 551
Query: 506 GMASNMSPATKLSPAQAGAVATTCARSSTVH 598
GM SNMSPA + GA A T RS T+H
Sbjct: 550 GMLSNMSPAMYCTSVPLGAPAMTWPRSITLH 458
Score = 84.5 bits (178), Expect(2) = 1e-021
Identities = 40/92 (43%), Positives = 55/92 (59%)
Frame = +1 / -2
Query: 325 DLCLFVLKVWRPCTNHGIYYYHLAACISWRYSFLAVL*NRDTLRVTPVVHDPLEEDSIRW 504
D LFVL+V NH +Y YHL+A I W SF+A+ * D + V P++H+PL +D+I
Sbjct: 731 DWGLFVLQVLGASPNHHVYNYHLSASIFWSDSFIAIF*YFDAVIVAPIMHNPL*KDNICL 552
Query: 505 RNGLKHVASNEAEPSASGSGCDHVCKVQHGAL 600
N LKHVA N A+ S + + +V H AL
Sbjct: 551 WNALKHVARNVLHVGATRSPGNDMAEVHHAAL 456
Score = 76.7 bits (161), Expect(2) = 5e-022
Identities = 33/69 (47%), Positives = 45/69 (65%)
Frame = -1 / +2
Query: 538 LRCWRHV*GHSASECCLPQVDHARLG*L*VCHDSKELQESYTSTRCRRQGDNSRYRGWCR 359
+ C RHV* HS CCL +VD+A L *+ ++K+LQ SY S RC R+GDN ++ GW +
Sbjct: 518 VHCGRHV*EHSTGRCCLSKVDYA*LERR*LHQNTKKLQ*SYRSKRCWRKGDNCKHGGWGK 697
Query: 358 ASKP*EQRD 332
+P QRD
Sbjct: 698 PPRPEAQRD 724
Score = 51.0 bits (105), Expect(2) = 1e-031
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +1 / -2
Query: 643 MPAANVDQGAYPLKHVAALPDGDVHEE 723
M + NVDQGAY L+ AALPDGDVHEE
Sbjct: 413 MASGNVDQGAYTLEDAAALPDGDVHEE 333
Score = 47.3 bits (97), Expect(2) = 5e-022
Identities = 23/47 (48%), Positives = 23/47 (48%)
Frame = -3 / +1
Query: 722 SSWTSPSGSAATCFRGYAPWSTLAAGMAXXXXXXXXXXXPYSAPCWT 582
SSWTSPSGSAA R APWSTL M SA WT
Sbjct: 334 SSWTSPSGSAAASSRV*APWSTLPEAMVGRHKQYRNRSRTSSAA*WT 474
Score = 38.2 bits (77), Expect(2) = 1e-021
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = +2 / -3
Query: 656 TSTRERIP*NTSPHSLTAMSMR 721
TSTRE IP T PHSL AMSMR
Sbjct: 400 TSTREPIPSKTLPHSLMAMSMR 335
>gb|BJ462654.1|BJ462654 BJ462654 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29l10 5', mRNA sequence
Length = 720
Score = 188 bits (404), Expect = 4e-047
Identities = 78/178 (43%), Positives = 109/178 (61%)
Frame = -2 / +2
Query: 705 VRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAG 526
+RECGD+F+G+ SL D I+CTVLDL VV APA +++VAG
Sbjct: 179 LRECGDIFKGLDSLTDCCGGDGTTARALVKAYPHIKCTVLDLPKVVEKAPADGVINYVAG 358
Query: 525 DMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPPNL 346
D+F +PP+ V LK ++H W D +CV IL C+KAIPPR+ GGKVII++ VVG +
Sbjct: 359 DLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCRKAIPPREEGGKVIIIEIVVGPSLGPV 538
Query: 345 KNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
+ +M L + G +RDE W + +AGF+DY I+ LG RS+IE+YP*+I+
Sbjct: 539 MFEAQLLMDMLMMVNTRGGQRDENHWCELFKKAGFTDYKIVKKLGARSVIEVYP*DIV 712
>gb|BJ467760.1|BJ467760 BJ467760 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29l10 3', mRNA sequence
Length = 779
Score = 188 bits (404), Expect = 4e-047
Identities = 78/178 (43%), Positives = 109/178 (61%)
Frame = -2 / -2
Query: 705 VRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAG 526
+RECGD+F+G+ SL D I+CTVLDL VV APA +++VAG
Sbjct: 730 LRECGDIFKGLDSLTDCCGGDGTTARALVKAYPHIKCTVLDLPKVVEKAPADGVINYVAG 551
Query: 525 DMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPPNL 346
D+F +PP+ V LK ++H W D +CV IL C+KAIPPR+ GGKVII++ VVG +
Sbjct: 550 DLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCRKAIPPREEGGKVIIIEIVVGPSLGPV 371
Query: 345 KNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
+ +M L + G +RDE W + +AGF+DY I+ LG RS+IE+YP*+I+
Sbjct: 370 MFEAQLLMDMLMMVNTRGGQRDENHWCELFKKAGFTDYKIVKKLGARSVIEVYP*DIV 197
>gb|BM817329.1|BM817329 HC105E06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105E06_T3.ab1 similar to Hexaprenyldihydroxybenzoate
methyltransferase,(S)-scoulerine 9-O-methyltransferase,
mRNA sequence
Length = 885
Score = 143 bits (306), Expect(3) = 2e-046
Identities = 58/106 (54%), Positives = 70/106 (66%)
Frame = -2 / +3
Query: 669 SLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAV 490
SL+DV ++CTVLDL VVA APA + FV GDMFE IPPA+ V
Sbjct: 294 SLIDVGGAHGTATAIIAKAFPHVKCTVLDLPRVVAGAPAHDNVIFVPGDMFEYIPPADTV 473
Query: 489 FLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPP 352
LKWI+HDW D +C+ +L+ CKKAIP RDAGGKVII+D VVG+ P
Sbjct: 474 LLKWILHDWPDDDCIKVLRQCKKAIPARDAGGKVIIMDMVVGSAGP 611
Score = 103 bits (219), Expect(2) = 4e-028
Identities = 48/82 (58%), Positives = 55/82 (67%)
Frame = +2 / -3
Query: 353 GGPAPTTVSTIITLPPASRGGIAFLQFFRIVTHSESPQSCMIHLRKTAFAGGMASNMSPA 532
G PTT+S IIT PPAS G+AFL + S S QSC IHL +T AGGM SNMSP
Sbjct: 610 GPADPTTISMIITFPPASLAGMAFLH*RSTLMQSSSGQSCKIHLSRTVSAGGMYSNMSPG 431
Query: 533 TKLSPAQAGAVATTCARSSTVH 598
TK++ + AGA ATT RSSTVH
Sbjct: 430 TKITLSWAGAPATTRGRSSTVH 365
Score = 56.5 bits (117), Expect(3) = 2e-046
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = -2 / +3
Query: 342 NKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIII 223
+KE +V D+F M ++G++R+E EWR I AGFSDY I+
Sbjct: 627 SKEAEVXFDVFMMYIDGIQREEHEWRKIFLXAGFSDYKIL 746
Score = 41.4 bits (84), Expect(2) = 4e-028
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +2 / -3
Query: 227 IM*SLKPASKMMFLHSCSSLSRPLTIIKKRSDMTCVS 337
I+*SL PA K +FLHSCSS P I K S+ T S
Sbjct: 742 IL*SLNPAXKKIFLHSCSSRWIPSMYIMKTSNXTSAS 632
Score = 24.4 bits (47), Expect(3) = 2e-046
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 213 GVRSIIELYP* 181
G+RSIIE+YP*
Sbjct: 758 GIRSIIEVYP* 790
>gb|AV917258.1|AV917258 AV917258 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18c14 5', mRNA sequence
Length = 582
Score = 181 bits (389), Expect = 5e-045
Identities = 72/174 (41%), Positives = 103/174 (59%)
Frame = -2 / +1
Query: 693 GDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFE 514
GD+F+G+ SL D I+CTVLDL V+ AP +++VAGD+F
Sbjct: 13 GDIFKGLESLTDCCGGDGTTARALVKAYPHIKCTVLDLPKVIDKAPKDGVVNYVAGDLFH 192
Query: 513 AIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
+P + AV LK ++H W D +CV IL CKKAIPP D GGK+II+D V+G + +
Sbjct: 193 TVPSSQAVMLKLVLHFWSDEDCVKILTQCKKAIPPHDEGGKIIIIDIVIGPSLGPIMFEA 372
Query: 333 TQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
+M L + G++R E +WR + EAGF DY I+ LG R +IE+YP*+++
Sbjct: 373 QLLMDMLMMVTTRGVQRSENDWRKLFMEAGFKDYKIVRKLGARCVIEVYP*DVV 534
>gb|AV922427.1|AV922427 AV922427 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18c14 3', mRNA sequence
Length = 530
Score = 181 bits (389), Expect = 5e-045
Identities = 72/174 (41%), Positives = 103/174 (59%)
Frame = -2 / -2
Query: 693 GDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFE 514
GD+F+G+ SL D I+CTVLDL V+ AP +++VAGD+F
Sbjct: 529 GDIFKGLESLTDCCGGDGTTARALVKAYPHIKCTVLDLPKVIDKAPKDGVVNYVAGDLFH 350
Query: 513 AIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
+P + AV LK ++H W D +CV IL CKKAIPP D GGK+II+D V+G + +
Sbjct: 349 TVPSSQAVMLKLVLHFWSDEDCVKILTQCKKAIPPHDEGGKIIIIDIVIGPSLGPIMFEA 170
Query: 333 TQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
+M L + G++R E +WR + EAGF DY I+ LG R +IE+YP*+++
Sbjct: 169 QLLMDMLMMVTTRGVQRSENDWRKLFMEAGFKDYKIVRKLGARCVIEVYP*DVV 8
>gb|BJ449787.1|BJ449787 BJ449787 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26l07 5', mRNA sequence
Length = 609
Score = 145 bits (311), Expect(3) = 2e-043
Identities = 59/103 (57%), Positives = 77/103 (74%)
Frame = -2 / +1
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVG 364
LSFVAGDMF++IP A+AV LK I+HDWG +CV ILK CK+AIP R+AGGKVII+D V G
Sbjct: 139 LSFVAGDMFQSIPSADAVLLKNILHDWGHDDCVKILKCCKEAIPARNAGGKVIIIDMVRG 318
Query: 363 AGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSD 235
+ + K E + + +LF M + G+ER+E EW+ I +AGFSD
Sbjct: 319 SANGDRKINEMEAIQNLFMMYITGIERNEIEWKRIFSDAGFSD 447
Score = 96.8 bits (205), Expect(2) = 1e-021
Identities = 50/109 (45%), Positives = 61/109 (55%)
Frame = +2 / -2
Query: 236 SLKPASKMMFLHSCSSLSRPLTIIKKRSDMTCVSLFLRFGGPAPTTVSTIITLPPASRGG 415
SLKPAS+ + HS S S P+ I + M +SL P T+S +IT PPA G
Sbjct: 446 SLKPASENILFHSISFRSIPVMYIMNKFCMASISLIFLSPFADPLTISIMITFPPAFLAG 267
Query: 416 IAFLQFFRIVTHSESPQSCMIHLRKTAFAGGMASNMSPATKLSPAQAGA 562
+A LQ I+T S PQSC + L KTA A GM NMSPATKL + A
Sbjct: 266 MASLQHLSILTQSSWPQSCKMFLSKTASADGMD*NMSPATKLRMSSPAA 120
Score = 35.9 bits (72), Expect(3) = 2e-043
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -2 / +1
Query: 669 SLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAG 544
SLVDV I+CTV+DL HVV + A AG
Sbjct: 4 SLVDVGGGNGAGTQVIAKAFPRIKCTVMDLPHVVVSGQAAAG 129
Score = 33.1 bits (66), Expect(3) = 2e-043
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2 / +1
Query: 237 DYIIIPVLGVRSIIELYP* 181
DY I+PVLG S+IE+YP*
Sbjct: 448 DYKILPVLGPYSVIEIYP* 504
Score = 25.8 bits (50), Expect(2) = 1e-021
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3 / -3
Query: 546 QRKRERLRPRVQGPARCTVWQGT 614
+R R R R +GP+RCT GT
Sbjct: 127 RRLPARKRQREEGPSRCT*CAGT 59
>gb|BU974771.1|BU974771 HB29A24r BC Hordeum vulgare subsp. vulgare cDNA clone HB29A24
5-PRIME, mRNA sequence
Length = 667
Score = 146 bits (313), Expect(3) = 3e-043
Identities = 59/101 (58%), Positives = 74/101 (73%)
Frame = -2 / +3
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVG 364
L FVAGDMFE+IPPA+AV LK ++HDWG +CV IL+ CK+AIP R AGGKVII+D V G
Sbjct: 216 LRFVAGDMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAIPARSAGGKVIIIDMVRG 395
Query: 363 AGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGF 241
+ + K E + M D+F M NG+ERDE EW+ I +AGF
Sbjct: 396 SLLGDKKIAEMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 518
Score = 95.9 bits (203), Expect(2) = 3e-022
Identities = 49/98 (50%), Positives = 56/98 (57%)
Frame = +2 / -1
Query: 245 PASKMMFLHSCSSLSRPLTIIKKRSDMTCVSLFLRFGGPAPTTVSTIITLPPASRGGIAF 424
PAS+ + HS SS S PL I S M +S P T+S IIT PPA G+A
Sbjct: 514 PASEKILFHSLSSRSTPLVHIANMSCMASISAIFLSPRRDPLTISMIITFPPALLAGMAS 335
Query: 425 LQFFRIVTHSESPQSCMIHLRKTAFAGGMASNMSPATK 538
LQ I+T S PQSC L +TA AGGM SNMSPATK
Sbjct: 334 LQR*SILTQSSWPQSCKTFLSRTASAGGMDSNMSPATK 221
Score = 34.5 bits (69), Expect(3) = 3e-043
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2 / +3
Query: 717 MDIAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLD 583
+++ + + G +F+G+ SLVDV I+CTVLD
Sbjct: 36 LEVIIVDKGRIFRGVTSLVDVGAGNGAGTRVVAKAFPRIKCTVLD 170
Score = 32.7 bits (65), Expect(3) = 3e-043
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2 / +3
Query: 237 DYIIIPVLGVRSIIELYP* 181
DY I+PVLG S+IE+YP*
Sbjct: 525 DYKIMPVLGPLSVIEIYP* 581
Score = 29.0 bits (57), Expect(2) = 3e-022
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1 / -3
Query: 583 VQHGALYGXXXXXXXXXXXAMPAANVDQGAYPLKHVAALPDGDVHEE 723
VQHGAL A+ A+VD+G + A + + D EE
Sbjct: 170 VQHGALDARERLGDHPRAGAVAGADVDEGGDAAEDAALVNNNDFQEE 30
>gb|AL503735.1|AL503735 AL503735 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03D24T 5', mRNA sequence
Length = 700
Score = 172 bits (371), Expect = 1e-042
Identities = 70/179 (39%), Positives = 104/179 (58%)
Frame = -2 / +1
Query: 705 VRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAG 526
+REC D+F+G+ SL D ++CTVLDL V+ P+ +++VAG
Sbjct: 31 MRECHDLFKGLESLTDCCGGDGKTARAITKAHPHVKCTVLDLPKVIEKTPSDCVVNYVAG 210
Query: 525 DMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPPNL 346
D+F +P A AV LK ++H W D +CV IL CK AIP R+ GGKVI++D VV +
Sbjct: 211 DLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCKNAIPSREEGGKVIVIDIVVEPSLGPV 390
Query: 345 KNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NIIQ 169
+ +M L + G +R E +WR++ +AGF+DY II +G R +IE+Y *++ Q
Sbjct: 391 MFEAQTLMDMLMLVFTRGRQRSENDWRDLFMKAGFTDYKIIKKMGARGVIEVYK*SLSQ 567
>gb|CB879734.1|CB879734 HP03H10w HP Hordeum vulgare subsp. vulgare cDNA clone HP03H10
3-PRIME, mRNA sequence
Length = 628
Score = 146 bits (313), Expect(3) = 2e-042
Identities = 59/101 (58%), Positives = 74/101 (73%)
Frame = -2 / -1
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVG 364
L FVAGDMFE+IPPA+AV LK ++HDWG +CV IL+ CK+AIP R AGGKVII+D V G
Sbjct: 475 LRFVAGDMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAIPARSAGGKVIIIDMVRG 296
Query: 363 AGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGF 241
+ + K E + M D+F M NG+ERDE EW+ I +AGF
Sbjct: 295 SLLGDKKIAEMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 173
Score = 32.7 bits (65), Expect(3) = 2e-042
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2 / -1
Query: 237 DYIIIPVLGVRSIIELYP* 181
DY I+PVLG S+IE+YP*
Sbjct: 166 DYKIMPVLGPLSVIEIYP* 110
Score = 31.8 bits (63), Expect(3) = 2e-042
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1 / -3
Query: 616 GVPCHTVHRAGPCTRGRNRSRLRWAQ 539
GVP H VHRAGP + R R R Q
Sbjct: 554 GVPAHQVHRAGPSSIPRPGGRRRRRQ 477
>gb|CB877071.1|CB877071 HP03H10T HP Hordeum vulgare subsp. vulgare cDNA clone HP03H10
5-PRIME, mRNA sequence
Length = 587
Score = 146 bits (313), Expect(3) = 2e-042
Identities = 59/101 (58%), Positives = 74/101 (73%)
Frame = -2 / +2
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVG 364
L FVAGDMFE+IPPA+AV LK ++HDWG +CV IL+ CK+AIP R AGGKVII+D V G
Sbjct: 161 LRFVAGDMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAIPARSAGGKVIIIDMVRG 340
Query: 363 AGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGF 241
+ + K E + M D+F M NG+ERDE EW+ I +AGF
Sbjct: 341 SLLGDKKIAEMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 463
Score = 32.7 bits (65), Expect(3) = 2e-042
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2 / +2
Query: 237 DYIIIPVLGVRSIIELYP* 181
DY I+PVLG S+IE+YP*
Sbjct: 470 DYKIMPVLGPLSVIEIYP* 526
Score = 31.8 bits (63), Expect(3) = 2e-042
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1 / +1
Query: 616 GVPCHTVHRAGPCTRGRNRSRLRWAQ 539
GVP H VHRAGP + R R R Q
Sbjct: 82 GVPAHQVHRAGPSSIPRPGGRRRRRQ 159
>gb|BJ457207.1|BJ457207 BJ457207 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26l07 3', mRNA sequence
Length = 565
Score = 144 bits (310), Expect(3) = 4e-042
Identities = 59/103 (57%), Positives = 77/103 (74%)
Frame = -2 / -3
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVG 364
LSFVAGDMF++IP A+AV LK I+HDWG +CV ILK CK+AIP R+AGGKVII+D V G
Sbjct: 449 LSFVAGDMFQSIPSADAVLLKNILHDWGHDDCVKILKCCKEAIPARNAGGKVIIIDMVRG 270
Query: 363 AGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSD 235
+ + K E + + +LF M + G+ER+E EW+ I +AGFSD
Sbjct: 269 SANGDRKINEMEAIQNLFMMYITGIERNEIEWKXIFSDAGFSD 141
Score = 95.9 bits (203), Expect(2) = 2e-021
Identities = 50/109 (45%), Positives = 60/109 (55%)
Frame = +2 / +1
Query: 236 SLKPASKMMFLHSCSSLSRPLTIIKKRSDMTCVSLFLRFGGPAPTTVSTIITLPPASRGG 415
SLKPAS+ HS S S P+ I + M +SL P T+S +IT PPA G
Sbjct: 142 SLKPASENXLFHSISFRSIPVMYIMNKFCMASISLIFLSPFADPLTISIMITFPPAFLAG 321
Query: 416 IAFLQFFRIVTHSESPQSCMIHLRKTAFAGGMASNMSPATKLSPAQAGA 562
+A LQ I+T S PQSC + L KTA A GM NMSPATKL + A
Sbjct: 322 MASLQHLSILTQSSWPQSCKMFLSKTASADGMD*NMSPATKLRMSSPAA 468
Score = 32.7 bits (65), Expect(3) = 4e-042
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2 / -3
Query: 237 DYIIIPVLGVRSIIELYP* 181
DY I PVLG S+IE+YP*
Sbjct: 140 DYXIXPVLGPYSVIEIYP* 84
Score = 32.2 bits (64), Expect(3) = 4e-042
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2 / -3
Query: 603 IQCTVLDLAHVVATAPACAG 544
I+CTV+DL HVV + A AG
Sbjct: 518 IKCTVMDLPHVVVSGQAAAG 459
Score = 25.8 bits (50), Expect(2) = 2e-021
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3 / +2
Query: 546 QRKRERLRPRVQGPARCTVWQGT 614
+R R R R +GP+RCT GT
Sbjct: 461 RRLPARKRQREEGPSRCT*CAGT 529
>gb|AV921748.1|AV921748 AV921748 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12j23 3', mRNA sequence
Length = 659
Score = 166 bits (357), Expect = 1e-040
Identities = 68/144 (47%), Positives = 95/144 (65%)
Frame = -2 / -1
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+CTVLDL VV APA +++VAGD+F +PP+ V LK ++H W D +CV IL C+
Sbjct: 650 IKCTVLDLPKVVEKAPADGVINYVAGDLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCR 471
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAG 244
KAIPPR+ GGKVII++ VVG + + +M L + G +RDE W + +AG
Sbjct: 470 KAIPPREEGGKVIIIEIVVGPSLGPVMFEAQLLMDMLMMVNTRGGQRDENHWCELFKKAG 291
Query: 243 FSDYIIIPVLGVRSIIELYP*NII 172
F+DY I+ LG RS+IE+YP*+I+
Sbjct: 290 FTDYKIVKKLGARSVIEVYP*DIV 219
>gb|BJ468231.1|BJ468231 BJ468231 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m03 3', mRNA sequence
Length = 626
Score = 166 bits (357), Expect = 1e-040
Identities = 68/144 (47%), Positives = 95/144 (65%)
Frame = -2 / -3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+CTVLDL VV APA +++VAGD+F +PP+ V LK ++H W D +CV IL C+
Sbjct: 615 IKCTVLDLPKVVEKAPADGVINYVAGDLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCR 436
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAG 244
KAIPPR+ GGKVII++ VVG + + +M L + G +RDE W + +AG
Sbjct: 435 KAIPPREEGGKVIIIEIVVGPSLGPVMFEAQLLMDMLMMVNTRGGQRDENHWCELFKKAG 256
Query: 243 FSDYIIIPVLGVRSIIELYP*NII 172
F+DY I+ LG RS+IE+YP*+I+
Sbjct: 255 FTDYKIVKKLGARSVIEVYP*DIV 184
>gb|CD662493.1|CD662493 UCRHV18_01ch06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01ch06, mRNA sequence
Length = 865
Score = 132 bits (282), Expect(2) = 1e-040
Identities = 51/115 (44%), Positives = 72/115 (62%)
Frame = -2 / -1
Query: 705 VRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAG 526
+REC D+F+G++SL D I+C VLDL V+ P+ +++VAG
Sbjct: 817 LRECHDLFKGVQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLPKVIEKVPSDGIVNYVAG 638
Query: 525 DMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGA 361
D+F AIPPA + LK ++H W D +C+ IL CKKAIP R+ GGKVI++D VVG+
Sbjct: 637 DLFHAIPPAQVLMLKLVLHFWSDEDCINILAQCKKAIPSREMGGKVIVIDIVVGS 473
Score = 54.2 bits (112), Expect(2) = 1e-040
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -2 / -1
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
L + G +RDE +W I +AGFS Y I+ LG R +IE+YP*+ +
Sbjct: 430 LMLVCTRGRQRDENDWSTIFTKAGFSGYKIVKKLGPRGVIEVYP*DCV 287
>gb|AV918157.1|AV918157 AV918157 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20b03 3', mRNA sequence
Length = 676
Score = 153 bits (329), Expect(2) = 5e-039
Identities = 61/144 (42%), Positives = 90/144 (62%)
Frame = -2 / -1
Query: 600 QCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKK 421
+CTVLDL V+ P+ +++VAGD+F +P A AV LK ++H W D +CV IL CK
Sbjct: 559 KCTVLDLPKVIEKTPSDCVVNYVAGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCKN 380
Query: 420 AIPPRDAGGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGF 241
AIP R+ GGKVI++D VV + + +M L + G +R E +WR++ +AGF
Sbjct: 379 AIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDMLMLVFTRGRQRSENDWRDLFMKAGF 200
Query: 240 SDYIIIPVLGVRSIIELYP*NIIQ 169
+DY II +G R +IE+Y *++ Q
Sbjct: 199 TDYKIIKKMGARGVIEVYK*SLSQ 128
Score = 27.6 bits (54), Expect(2) = 5e-039
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2 / -3
Query: 705 VRECGDVFQGIRSLVD 658
+REC D+F+G+ SL D
Sbjct: 665 MRECHDLFKGLESLTD 618
>gb|BF259348.2|BF259348 HVSMEf0019F16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019F16f, mRNA sequence
Length = 574
Score = 125 bits (268), Expect(2) = 6e-039
Identities = 50/124 (40%), Positives = 71/124 (57%)
Frame = -2 / +3
Query: 705 VRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAG 526
+REC +F G++SL D I+C VLDL V+ P+ +++VAG
Sbjct: 57 LRECRGLFDGLQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLPKVIDKVPSDGVVNYVAG 236
Query: 525 DMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPPNL 346
D+ +PPA AV LK ++H W D +C+ IL CKKAIP R+ GGKVII+D V+G+ +
Sbjct: 237 DLLHTVPPAQAVMLKLVLHFWSDEDCINILAQCKKAIPSREMGGKVIIIDIVLGSSLATI 416
Query: 345 KNKE 334
E
Sbjct: 417 TETE 428
Score = 55.1 bits (114), Expect(2) = 6e-039
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = -2 / +3
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELY 187
+M L F+ G +R+E+EW + +AGFSDY II LG R +IE+Y
Sbjct: 432 LMDMLMFICTRGRQRNEKEWSMLFMKAGFSDYEIIKKLGHRGVIEVY 572
>gb|BI956571.1|BI956571 HVSMEn0004D06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004D06f, mRNA sequence
Length = 780
Score = 159 bits (342), Expect = 1e-038
Identities = 66/124 (53%), Positives = 81/124 (65%)
Frame = -2 / +3
Query: 723 FLMDIAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAG 544
FLMDIA+RECG VF+GI SLVDV I+C+V+DL HV+A AP+
Sbjct: 351 FLMDIAIRECGSVFEGIGSLVDVAGGHGGAAQAISKSFPHIKCSVMDLGHVIAGAPSGTD 530
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVG 364
+ ++AGDMFE+IP A+ VFLKWIMHDW D +C+ ILKNC K + GKVIIV VG
Sbjct: 531 VQYIAGDMFESIPQADVVFLKWIMHDWSDDDCIKILKNCIKLSLQKMLAGKVIIVXWWVG 710
Query: 363 AGPP 352
PP
Sbjct: 711 WRPP 722
Score = 86.3 bits (182), Expect(2) = 6e-026
Identities = 42/83 (50%), Positives = 49/83 (59%)
Frame = +2 / -3
Query: 350 FGGPAPTTVSTIITLPPASRGGIAFLQFFRIVTHSESPQSCMIHLRKTAFAGGMASNMSP 529
FGG PT TIIT P + +F+QFF I+ S S QSC+IH RKT A GM SNMSP
Sbjct: 724 FGGLHPTHHXTIITFPASIFWSDSFMQFFSILMQSSSLQSCIIHFRKTTSACGMLSNMSP 545
Query: 530 ATKLSPAQAGAVATTCARSSTVH 598
A + GA A T RS T+H
Sbjct: 544 AMYCTSVPLGAPAMTWPRSITLH 476
Score = 51.0 bits (105), Expect(2) = 6e-026
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +1 / -2
Query: 643 MPAANVDQGAYPLKHVAALPDGDVHEE 723
M + NVDQGAY L+ AALPDGDVHEE
Sbjct: 431 MASGNVDQGAYTLEDAAALPDGDVHEE 351
>gb|AV929439.1|AV929439 AV929439 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14d20 3', mRNA sequence
Length = 670
Score = 113 bits (242), Expect(3) = 8e-038
Identities = 43/90 (47%), Positives = 60/90 (66%)
Frame = -2 / -3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+C VLDL V+ P+ +++VAGD+F +PPA AV LK ++H W D +C+ IL CK
Sbjct: 653 IKCNVLDLPKVIDKVPSDGVVNYVAGDLFHTVPPAQAVMLKLVLHFWSDEDCINILAQCK 474
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
KAIP R+ GGKVII+D V+G+ + E
Sbjct: 473 KAIPSREMGGKVIIIDIVLGSSLATITETE 384
Score = 61.6 bits (128), Expect(3) = 8e-038
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = -2 / -3
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*N 178
+M L F+ G +R+E+EW + +AGFSDY II LG R +IE+YP*N
Sbjct: 380 LMDMLMFICTRGRQRNEKEWSMLFMKAGFSDYKIIKKLGHRGVIEVYP*N 231
Score = 22.6 bits (43), Expect(3) = 8e-038
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1 / -3
Query: 55 YSYILTKRMVYVCMY 11
+SY+ +YVCMY
Sbjct: 71 HSYVCVHVCMYVCMY 27
>gb|AV920383.1|AV920383 AV920383 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13l15 3', mRNA sequence
Length = 682
Score = 113 bits (242), Expect(3) = 8e-038
Identities = 43/90 (47%), Positives = 60/90 (66%)
Frame = -2 / -3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+C VLDL V+ P+ +++VAGD+F +PPA AV LK ++H W D +C+ IL CK
Sbjct: 674 IKCNVLDLPKVIDKVPSDGVVNYVAGDLFHTVPPAQAVMLKLVLHFWSDEDCINILAQCK 495
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
KAIP R+ GGKVII+D V+G+ + E
Sbjct: 494 KAIPSREMGGKVIIIDIVLGSSLATITETE 405
Score = 61.6 bits (128), Expect(3) = 8e-038
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = -2 / -3
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*N 178
+M L F+ G +R+E+EW + +AGFSDY II LG R +IE+YP*N
Sbjct: 401 LMDMLMFICTRGRQRNEKEWSMLFMKAGFSDYKIIKKLGHRGVIEVYP*N 252
Score = 22.6 bits (43), Expect(3) = 8e-038
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1 / -3
Query: 55 YSYILTKRMVYVCMY 11
+SY+ +YVCMY
Sbjct: 92 HSYVCVHVCMYVCMY 48
>gb|AV928262.1|AV928262 AV928262 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27k15 3', mRNA sequence
Length = 728
Score = 113 bits (242), Expect(3) = 1e-037
Identities = 43/90 (47%), Positives = 60/90 (66%)
Frame = -2 / -2
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+C VLDL V+ P+ +++VAGD+F +PPA AV LK ++H W D +C+ IL CK
Sbjct: 682 IKCNVLDLPKVIDKVPSDGVVNYVAGDLFHTVPPAQAVMLKLVLHFWSDEDCINILAQCK 503
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
KAIP R+ GGKVII+D V+G+ + E
Sbjct: 502 KAIPSREMGGKVIIIDIVLGSSLATITETE 413
Score = 61.6 bits (128), Expect(3) = 1e-037
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = -2 / -2
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*N 178
+M L F+ G +R+E+EW + +AGFSDY II LG R +IE+YP*N
Sbjct: 409 LMDMLMFICTRGRQRNEKEWSMLFMKAGFSDYKIIKKLGHRGVIEVYP*N 260
Score = 22.6 bits (43), Expect(3) = 1e-037
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1 / -2
Query: 55 YSYILTKRMVYVCMY 11
+SY+ +YVCMY
Sbjct: 100 HSYVCVHVCMYVCMY 56
>gb|AL503330.1|AL503330 AL503330 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01K22T 5', mRNA sequence
Length = 700
Score = 156 bits (335), Expect = 1e-037
Identities = 63/161 (39%), Positives = 92/161 (57%)
Frame = -2 / +1
Query: 705 VRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAG 526
+REC D+F+G+ SL D ++CTVLDL V+ P+ +++VAG
Sbjct: 214 MRECHDLFKGLESLTDCCGGDGKTARAITKAHPHVKCTVLDLPKVIEKTPSDCVVNYVAG 393
Query: 525 DMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPPNL 346
D+F +P A AV LK ++H W D +CV IL CK AIP R+ GGKVI++D VV +
Sbjct: 394 DLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCKNAIPSREEGGKVIVIDIVVEPSLGPV 573
Query: 345 KNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIII 223
+ +M L + G +R E +WR++ +AGF+DY II
Sbjct: 574 MFEAQTLMDMLMLVFTRGRQRSENDWRDLFMKAGFTDYKII 696
>gb|BF264626.3|BF264626 HV_CEa0009O22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009O22f, mRNA sequence
Length = 877
Score = 142 bits (305), Expect(2) = 3e-037
Identities = 57/101 (56%), Positives = 73/101 (72%)
Frame = -2 / +1
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVG 364
L FVAGDMFE+IPPA+AV LK ++HDWG +CV IL+ CK+A+P R AGGKVII+D G
Sbjct: 40 LRFVAGDMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAVPARSAGGKVIIIDMGRG 219
Query: 363 AGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGF 241
+ + K E + M D+F M NG+ERDE EW+ I +AGF
Sbjct: 220 SLLGDKKIAEMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 342
Score = 32.7 bits (65), Expect(2) = 3e-037
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2 / +1
Query: 237 DYIIIPVLGVRSIIELYP* 181
DY I+PVLG S+IE+YP*
Sbjct: 349 DYKIMPVLGPLSVIEIYP* 405
>gb|BQ662115.1|BQ662115 HR01K01u HR Hordeum vulgare subsp. vulgare cDNA clone HR01K01
3-PRIME, mRNA sequence
Length = 528
Score = 113 bits (242), Expect(2) = 3e-037
Identities = 43/90 (47%), Positives = 60/90 (66%)
Frame = -2 / -2
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+C VLDL V+ P+ +++VAGD+F +PPA AV LK ++H W D +C+ IL CK
Sbjct: 500 IKCNVLDLPKVIDKVPSDGVVNYVAGDLFHTVPPAQAVMLKLVLHFWSDEDCINILAQCK 321
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
KAIP R+ GGKVII+D V+G+ + E
Sbjct: 320 KAIPSREMGGKVIIIDIVLGSSLATITETE 231
Score = 61.6 bits (128), Expect(2) = 3e-037
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = -2 / -2
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*N 178
+M L F+ G +R+E+EW + +AGFSDY II LG R +IE+YP*N
Sbjct: 227 LMDMLMFICTRGRQRNEKEWSMLFMKAGFSDYKIIKKLGHRGVIEVYP*N 78
>gb|BJ466406.1|BJ466406 BJ466406 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31p18 3', mRNA sequence
Length = 613
Score = 155 bits (332), Expect = 3e-037
Identities = 61/145 (42%), Positives = 91/145 (62%)
Frame = -2 / -2
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
++CTVLDL V+ P+ +++VAGD+F +P A AV LK ++H W D +CV IL CK
Sbjct: 576 VKCTVLDLPKVIEKTPSDCVVNYVAGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCK 397
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAG 244
AIP R+ GGKVI++D VV + + +M L + G +R E +WR++ +AG
Sbjct: 396 NAIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDMLMLVFTRGRQRSENDWRDLFMKAG 217
Query: 243 FSDYIIIPVLGVRSIIELYP*NIIQ 169
F+DY II +G R +IE+Y *++ Q
Sbjct: 216 FTDYKIIKKMGARGVIEVYK*SLSQ 142
>gb|AV931831.1|AV931831 AV931831 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26g01 3', mRNA sequence
Length = 680
Score = 114 bits (244), Expect(2) = 4e-037
Identities = 43/90 (47%), Positives = 60/90 (66%)
Frame = -2 / -3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+C VLDL V+ P+ +++VAGD+F AIPPA + LK ++H W D +C+ IL CK
Sbjct: 669 IKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILSQCK 490
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
KAIP R+ GGKVI++D VVG+ + E
Sbjct: 489 KAIPSREMGGKVIVIDIVVGSSSKEILETE 400
Score = 60.2 bits (125), Expect(2) = 4e-037
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -2 / -3
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
+M L + G +RDE +W I +AGFSDY I+ LG R IIE+YP*+ +
Sbjct: 396 LMDMLMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGIIEVYP*DCV 241
>gb|AV931697.1|AV931697 AV931697 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23n09 3', mRNA sequence
Length = 672
Score = 114 bits (244), Expect(2) = 4e-037
Identities = 43/90 (47%), Positives = 60/90 (66%)
Frame = -2 / -2
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+C VLDL V+ P+ +++VAGD+F AIPPA + LK ++H W D +C+ IL CK
Sbjct: 668 IKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILSQCK 489
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
KAIP R+ GGKVI++D VVG+ + E
Sbjct: 488 KAIPSREMGGKVIVIDIVVGSSSKEILETE 399
Score = 60.2 bits (125), Expect(2) = 4e-037
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -2 / -2
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
+M L + G +RDE +W I +AGFSDY I+ LG R IIE+YP*+ +
Sbjct: 395 LMDMLMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGIIEVYP*DCV 240
>gb|AV928022.1|AV928022 AV928022 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13k11 3', mRNA sequence
Length = 667
Score = 114 bits (244), Expect(2) = 4e-037
Identities = 43/90 (47%), Positives = 60/90 (66%)
Frame = -2 / -1
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+C VLDL V+ P+ +++VAGD+F AIPPA + LK ++H W D +C+ IL CK
Sbjct: 658 IKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILSQCK 479
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
KAIP R+ GGKVI++D VVG+ + E
Sbjct: 478 KAIPSREMGGKVIVIDIVVGSSSKEILETE 389
Score = 60.2 bits (125), Expect(2) = 4e-037
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -2 / -1
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
+M L + G +RDE +W I +AGFSDY I+ LG R IIE+YP*+ +
Sbjct: 385 LMDMLMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGIIEVYP*DCV 230
>gb|AV930320.1|AV930320 AV930320 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22a15 3', mRNA sequence
Length = 664
Score = 114 bits (244), Expect(2) = 4e-037
Identities = 43/90 (47%), Positives = 60/90 (66%)
Frame = -2 / -3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+C VLDL V+ P+ +++VAGD+F AIPPA + LK ++H W D +C+ IL CK
Sbjct: 593 IKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILSQCK 414
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
KAIP R+ GGKVI++D VVG+ + E
Sbjct: 413 KAIPSREMGGKVIVIDIVVGSSSKEILETE 324
Score = 60.2 bits (125), Expect(2) = 4e-037
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -2 / -3
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
+M L + G +RDE +W I +AGFSDY I+ LG R IIE+YP*+ +
Sbjct: 320 LMDMLMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGIIEVYP*DCV 165
>gb|AV930527.1|AV930527 AV930527 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22o21 3', mRNA sequence
Length = 665
Score = 114 bits (244), Expect(2) = 4e-037
Identities = 43/90 (47%), Positives = 60/90 (66%)
Frame = -2 / -3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+C VLDL V+ P+ +++VAGD+F AIPPA + LK ++H W D +C+ IL CK
Sbjct: 657 IKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILSQCK 478
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKE 334
KAIP R+ GGKVI++D VVG+ + E
Sbjct: 477 KAIPSREMGGKVIVIDIVVGSSSKEILETE 388
Score = 60.2 bits (125), Expect(2) = 4e-037
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -2 / -3
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
+M L + G +RDE +W I +AGFSDY I+ LG R IIE+YP*+ +
Sbjct: 384 LMDMLMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGIIEVYP*DCV 229
>gb|BJ468335.1|BJ468335 BJ468335 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38e18 3', mRNA sequence
Length = 744
Score = 145 bits (311), Expect(2) = 7e-037
Identities = 60/143 (41%), Positives = 85/143 (59%)
Frame = -2 / -3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+CTVLDL V+ A +++V GD+F +P A AV LK ++H W D +CV IL CK
Sbjct: 628 IKCTVLDLPKVIDKTSADGIVNYVGGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCK 449
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAG 244
AIP R+ GGKVI++D VV + + +M L + G +R E +W + +AG
Sbjct: 448 NAIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDILMLVFTRGRQRSESDWHVLFTKAG 269
Query: 243 FSDYIIIPVLGVRSIIELYP*NI 175
FSDY I+ LG R +IE+Y * +
Sbjct: 268 FSDYKIVKRLGARGVIEVYK*TV 200
Score = 28.6 bits (56), Expect(2) = 7e-037
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2 / -2
Query: 705 VRECGDVFQGIRSLVD 658
+REC D+F+G+ SL D
Sbjct: 731 IRECHDLFKGLESLTD 684
>gb|AV929534.1|AV929534 AV929534 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14j15 3', mRNA sequence
Length = 625
Score = 153 bits (328), Expect = 1e-036
Identities = 61/143 (42%), Positives = 89/143 (62%)
Frame = -2 / -1
Query: 597 CTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKA 418
CTVLDL V+ P+ +++VAGD+F +P A AV LK ++H W D +CV IL CK A
Sbjct: 625 CTVLDLPKVIEKTPSDCVVNYVAGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCKNA 446
Query: 417 IPPRDAGGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFS 238
IP R+ GGKVI++D VV + + +M L + G +R E +WR++ +AGF+
Sbjct: 445 IPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDMLMLVFTRGRQRSENDWRDLFMKAGFT 266
Query: 237 DYIIIPVLGVRSIIELYP*NIIQ 169
DY II +G R +IE+Y *++ Q
Sbjct: 265 DYKIIKKMGARGVIEVYK*SLSQ 197
>gb|CD662288.1|CD662288 UCRHV18_01aa10_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01aa10, mRNA sequence
Length = 792
Score = 117 bits (251), Expect(2) = 2e-036
Identities = 46/107 (42%), Positives = 65/107 (60%)
Frame = -2 / -3
Query: 681 QGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPP 502
+G++SL D I+C VLDL V+ P+ +++VAGD+F AIPP
Sbjct: 790 KGVQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPP 611
Query: 501 ANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGA 361
A + LK ++H W D +C+ IL CKKAIP R+ GGKVI++D VVG+
Sbjct: 610 AQVLMLKLVLHFWSDEDCINILAQCKKAIPSREMGGKVIVIDIVVGS 470
Score = 54.2 bits (112), Expect(2) = 2e-036
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -2 / -3
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
L + G +RDE +W I +AGFS Y I+ LG R +IE+YP*+ +
Sbjct: 427 LMLVCTRGRQRDENDWSTIFTKAGFSGYKIVKKLGPRGVIEVYP*DCV 284
>gb|CD663812.1|CD663812 UCRHV18_06ch08_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06ch08, mRNA sequence
Length = 791
Score = 117 bits (251), Expect(2) = 2e-036
Identities = 46/107 (42%), Positives = 65/107 (60%)
Frame = -2 / -3
Query: 681 QGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPP 502
+G++SL D I+C VLDL V+ P+ +++VAGD+F AIPP
Sbjct: 789 KGVQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPP 610
Query: 501 ANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGA 361
A + LK ++H W D +C+ IL CKKAIP R+ GGKVI++D VVG+
Sbjct: 609 AQVLMLKLVLHFWSDEDCINILAQCKKAIPSREMGGKVIVIDIVVGS 469
Score = 54.2 bits (112), Expect(2) = 2e-036
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -2 / -3
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
L + G +RDE +W I +AGFS Y I+ LG R +IE+YP*+ +
Sbjct: 426 LMLVCTRGRQRDENDWSTIFTKAGFSGYKIVKKLGPRGVIEVYP*DCV 283
>gb|BJ463550.1|BJ463550 BJ463550 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32h07 5', mRNA sequence
Length = 540
Score = 143 bits (306), Expect(2) = 3e-036
Identities = 57/130 (43%), Positives = 84/130 (64%)
Frame = -2 / +2
Query: 561 APACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVII 382
+P+ ++VAGD+F +PP+ V LK ++H W D +CV IL C+KAIPPR+ GGKVII
Sbjct: 89 SPS*WSXNYVAGDLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCRKAIPPREEGGKVII 268
Query: 381 VDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRS 202
++ VVG + + +M L + G +RDE W + +AGF+DY I+ LG RS
Sbjct: 269 IEIVVGPSLGPVMFEAQLLMDMLMMVNTRGGQRDENHWCELFKKAGFTDYKIVKKLGARS 448
Query: 201 IIELYP*NII 172
+IE+YP*+I+
Sbjct: 449 VIEVYP*DIV 478
Score = 28.6 bits (56), Expect(2) = 3e-036
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / +3
Query: 603 IQCTVLDLAHVVATAPA 553
I+CTVLDL VV APA
Sbjct: 48 IKCTVLDLPKVVEKAPA 98
>gb|AV916317.1|AV916317 AV916317 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12j23 5', mRNA sequence
Length = 585
Score = 149 bits (321), Expect = 1e-035
Identities = 62/146 (42%), Positives = 85/146 (58%)
Frame = -2 / +2
Query: 705 VRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAG 526
+RECGD+F+G+ SL D I+CTVLDL VV APA +++VAG
Sbjct: 134 LRECGDIFKGLDSLTDCCGGDGTTARALVKAYPHIKCTVLDLPKVVEKAPADGVINYVAG 313
Query: 525 DMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPPNL 346
D+F +PP+ V LK ++H W D +CV IL C+KAIPPR+ GGKVII++ VVG +
Sbjct: 314 DLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCRKAIPPREEGGKVIIIEIVVGPSLGPV 493
Query: 345 KNKETQVMSDLFFMIVNGLERDEQEW 268
+ +M L + G +RDE W
Sbjct: 494 MFEAQLLMDMLMMVNTRGGQRDENHW 571
>gb|BM817346.1|BM817346 HC111F01_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111F01_T3.ab1 similar to Hexaprenyldihydroxybenzoate
methyltransferase,Apigenin
4'-O-methyltransferase,[Myelin basic protein]-arginine
N-methyltransferase,Catechol
O-methyltransferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 905
Score = 149 bits (321), Expect = 1e-035
Identities = 63/167 (37%), Positives = 92/167 (55%)
Frame = -2 / +3
Query: 705 VRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAG 526
+REC D+F+G+ SL D ++CTVLDL V+ AP+ ++ VAG
Sbjct: 237 MRECHDLFKGLESLTDCCGGDGTTARAITKAHPHVKCTVLDLPKVIDKAPSDGIVNCVAG 416
Query: 525 DMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPPNL 346
D+F ++P + AV LK ++H W D +CV IL C+ AIP + GGKVII+D VVG +
Sbjct: 417 DLFHSVPKSQAVMLKLVLHHWSDEDCVKILSQCRDAIPSHEEGGKVIIIDIVVGPSLXPV 596
Query: 345 KNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVR 205
+ +M L + +R E +W + +AGFSDY I+ L R
Sbjct: 597 MFEAQLLMDMLMLVNTKSRQRTENDWHELFMKAGFSDYKIVKKLRAR 737
>gb|BJ467944.1|BJ467944 BJ467944 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g22 3', mRNA sequence
Length = 638
Score = 148 bits (318), Expect = 3e-035
Identities = 60/133 (45%), Positives = 86/133 (64%)
Frame = -2 / -3
Query: 570 VATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGK 391
V APA +++VAGD+F +PP+ V LK ++H W D +CV IL C+KAIPPR+ GGK
Sbjct: 636 VEKAPADGVINYVAGDLFHTVPPSQVVMLKLVLHFWSDEDCVKILAQCRKAIPPREEGGK 457
Query: 390 VIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLG 211
VII++ VVG + + +M L + G +RDE W + +AGF+DY I+ LG
Sbjct: 456 VIIIEIVVGPSLGPVMFEAQLLMDMLMMVNTRGGQRDENHWCELFKKAGFTDYKIVKKLG 277
Query: 210 VRSIIELYP*NII 172
RS+IE+YP*+I+
Sbjct: 276 ARSVIEVYP*DIV 238
>gb|BQ659524.1|BQ659524 HE01L03u HE Hordeum vulgare subsp. vulgare cDNA clone HE01L03
3-PRIME, mRNA sequence
Length = 533
Score = 135 bits (290), Expect(2) = 3e-035
Identities = 54/95 (56%), Positives = 69/95 (72%)
Frame = -2 / -3
Query: 525 DMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGAGPPNL 346
DMFE+IPPA+AV LK ++HDWG +CV IL+ CK+AIP R AGGKVII+D V G+ +
Sbjct: 531 DMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAIPARSAGGKVIIIDMVRGSLLGDK 352
Query: 345 KNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGF 241
K E + M D+F M NG+ERDE EW+ I +AGF
Sbjct: 351 KIAEMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 247
Score = 32.7 bits (65), Expect(2) = 3e-035
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2 / -3
Query: 237 DYIIIPVLGVRSIIELYP* 181
DY I+PVLG S+IE+YP*
Sbjct: 240 DYKIMPVLGPLSVIEIYP* 184
>gb|BQ658222.1|BQ658222 HA05D15u HA Hordeum vulgare subsp. vulgare cDNA clone HA05D15
3-PRIME, mRNA sequence
Length = 509
Score = 105 bits (223), Expect(3) = 4e-035
Identities = 41/61 (67%), Positives = 50/61 (81%)
Frame = -2 / -3
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVG 364
L FVAGDMFE+IPPA+AV LK ++HDWG +CV IL+ CK+AIP R AGGKVII+D V G
Sbjct: 474 LRFVAGDMFESIPPADAVLLKNVLHDWGHDDCVKILQRCKEAIPARSAGGKVIIIDMVRG 295
Query: 363 A 361
+
Sbjct: 294 S 292
Score = 48.3 bits (99), Expect(3) = 4e-035
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / -2
Query: 357 PPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGF 241
P +++ + M D+F M NG+ERDE EW+ I +AGF
Sbjct: 289 PRR*EDRRMEAMQDMFAMCTNGVERDESEWKRIFSDAGF 173
Score = 32.7 bits (65), Expect(3) = 4e-035
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2 / -2
Query: 237 DYIIIPVLGVRSIIELYP* 181
DY I+PVLG S+IE+YP*
Sbjct: 166 DYKIMPVLGPLSVIEIYP* 110
>gb|AV930452.1|AV930452 AV930452 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22j14 3', mRNA sequence
Length = 692
Score = 113 bits (241), Expect(2) = 6e-035
Identities = 42/81 (51%), Positives = 58/81 (71%)
Frame = -2 / -1
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+C VLDL V+ P+ +++VAGD+F AIPPA + LK ++H W D +C+ IL CK
Sbjct: 680 IKCNVLDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILAQCK 501
Query: 423 KAIPPRDAGGKVIIVDTVVGA 361
KAIP R+ GGKVI++D VVG+
Sbjct: 500 KAIPSREMGGKVIVIDIVVGS 438
Score = 54.2 bits (112), Expect(2) = 6e-035
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -2 / -1
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
L + G +RDE +W I +AGFS Y I+ LG R +IE+YP*+ +
Sbjct: 395 LMLVCTRGRQRDENDWSTIFTKAGFSGYKIVKKLGPRGVIEVYP*DCV 252
>gb|CB879386.1|CB879386 HP02A07w HP Hordeum vulgare subsp. vulgare cDNA clone HP02A07
3-PRIME, mRNA sequence
Length = 539
Score = 132 bits (282), Expect(2) = 6e-035
Identities = 51/115 (44%), Positives = 72/115 (62%)
Frame = -2 / -2
Query: 705 VRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAG 526
+REC D+F+G++SL D I+C VLDL V+ P+ +++VAG
Sbjct: 487 LRECHDLFKGVQSLTDCCGGDGTTARAIVKAFPHIKCNVLDLPKVIEKVPSDGIVNYVAG 308
Query: 525 DMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPRDAGGKVIIVDTVVGA 361
D+F AIPPA + LK ++H W D +C+ IL CKKAIP R+ GGKVI++D VVG+
Sbjct: 307 DLFHAIPPAQVLMLKLVLHFWSDEDCINILAQCKKAIPSREMGGKVIVIDIVVGS 143
Score = 35.4 bits (71), Expect(2) = 6e-035
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2 / -2
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIII 223
L + G +RDE +W I +AGFS Y I+
Sbjct: 100 LMLVCTRGRQRDENDWSTIFTKAGFSGYKIV 8
>gb|CD662211.1|CD662211 UCRHV18_01af07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01af07, mRNA sequence
Length = 708
Score = 106 bits (226), Expect(2) = 1e-034
Identities = 40/85 (47%), Positives = 56/85 (65%)
Frame = -2 / -1
Query: 588 LDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPP 409
LDL V+ P+ +++VAGD+F AIPPA + LK ++H W D +C+ IL CKKAIP
Sbjct: 699 LDLPKVIEKVPSDGIVNYVAGDLFHAIPPAQVLMLKLVLHFWSDEDCINILSQCKKAIPS 520
Query: 408 RDAGGKVIIVDTVVGAGPPNLKNKE 334
R+ GGKVI++D VVG+ + E
Sbjct: 519 REMGGKVIVIDIVVGSSSKEILETE 445
Score = 60.2 bits (125), Expect(2) = 1e-034
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -2 / -1
Query: 327 VMSDLFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*NII 172
+M L + G +RDE +W I +AGFSDY I+ LG R IIE+YP*+ +
Sbjct: 441 LMDMLMLVCTKGRQRDENDWSTIFTKAGFSDYKIVKKLGARGIIEVYP*DCV 286
>gb|AV918926.1|AV918926 AV918926 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22l17 3', mRNA sequence
Length = 655
Score = 145 bits (311), Expect = 3e-034
Identities = 60/143 (41%), Positives = 85/143 (59%)
Frame = -2 / -1
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+CTVLDL V+ A +++V GD+F +P A AV LK ++H W D +CV IL CK
Sbjct: 631 IKCTVLDLPKVIDKTSADGIVNYVGGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCK 452
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAG 244
AIP R+ GGKVI++D VV + + +M L + G +R E +W + +AG
Sbjct: 451 NAIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDILMLVFTRGRQRSESDWHVLFTKAG 272
Query: 243 FSDYIIIPVLGVRSIIELYP*NI 175
FSDY I+ LG R +IE+Y * +
Sbjct: 271 FSDYKIVKRLGARGVIEVYK*TV 203
>gb|AV921351.1|AV921351 AV921351 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23c06 3', mRNA sequence
Length = 657
Score = 145 bits (311), Expect = 3e-034
Identities = 60/143 (41%), Positives = 85/143 (59%)
Frame = -2 / -2
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+CTVLDL V+ A +++V GD+F +P A AV LK ++H W D +CV IL CK
Sbjct: 629 IKCTVLDLPKVIDKTSADGIVNYVGGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCK 450
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAG 244
AIP R+ GGKVI++D VV + + +M L + G +R E +W + +AG
Sbjct: 449 NAIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDILMLVFTRGRQRSESDWHVLFTKAG 270
Query: 243 FSDYIIIPVLGVRSIIELYP*NI 175
FSDY I+ LG R +IE+Y * +
Sbjct: 269 FSDYKIVKRLGARGVIEVYK*TV 201
>gb|BJ468058.1|BJ468058 BJ468058 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30o16 3', mRNA sequence
Length = 674
Score = 145 bits (311), Expect = 3e-034
Identities = 60/143 (41%), Positives = 85/143 (59%)
Frame = -2 / -2
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
I+CTVLDL V+ A +++V GD+F +P A AV LK ++H W D +CV IL CK
Sbjct: 649 IKCTVLDLPKVIDKTSADGIVNYVGGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCK 470
Query: 423 KAIPPRDAGGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAG 244
AIP R+ GGKVI++D VV + + +M L + G +R E +W + +AG
Sbjct: 469 NAIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDILMLVFTRGRQRSESDWHVLFTKAG 290
Query: 243 FSDYIIIPVLGVRSIIELYP*NI 175
FSDY I+ LG R +IE+Y * +
Sbjct: 289 FSDYKIVKRLGARGVIEVYK*TV 221
>gb|AV918077.1|AV918077 AV918077 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17l08 3', mRNA sequence
Length = 640
Score = 143 bits (307), Expect = 1e-033
Identities = 59/142 (41%), Positives = 84/142 (59%)
Frame = -2 / -1
Query: 600 QCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKK 421
+CTVLDL V+ A +++V GD+F +P A AV LK ++H W D +CV IL CK
Sbjct: 625 KCTVLDLPKVIDKTSADGIVNYVGGDLFHTVPKAQAVMLKLVLHHWSDDDCVKILTQCKN 446
Query: 420 AIPPRDAGGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGF 241
AIP R+ GGKVI++D VV + + +M L + G +R E +W + +AGF
Sbjct: 445 AIPSREEGGKVIVIDIVVEPSLGPVMFEAQTLMDILMLVFTRGRQRSESDWHVLFTKAGF 266
Query: 240 SDYIIIPVLGVRSIIELYP*NI 175
SDY I+ LG R +IE+Y * +
Sbjct: 265 SDYKIVKRLGARGVIEVYK*TV 200
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 358,493,553
Number of Sequences: 312970
Number of extensions: 5846921
Number of successful extensions: 56211
Number of sequences better than 1.0e-020: 149
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8016758001
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)