TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.2
(595 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA li... 250 5e-066
gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. v... 250 5e-066
gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA li... 152 3e-060
gb|AV931472.1|AV931472 AV931472 K. Sato unpublished cDNA li... 218 2e-056
gb|AV930935.1|AV930935 AV930935 K. Sato unpublished cDNA li... 201 3e-051
gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA li... 199 1e-050
gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-a... 195 2e-049
gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. v... 194 4e-049
gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-a... 190 5e-048
gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm librar... 190 5e-048
gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgar... 190 5e-048
gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA li... 189 9e-048
gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA li... 189 9e-048
gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA li... 181 4e-045
gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA li... 177 6e-044
gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA li... 171 2e-042
gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA li... 171 3e-042
gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA li... 171 3e-042
gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA li... 171 3e-042
gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA li... 171 3e-042
gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa... 164 3e-040
gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no... 163 9e-040
gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. v... 160 8e-039
gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green... 157 5e-038
gb|BE060385.2|BE060385 HVSMEg0012C17f Hordeum vulgare pre-a... 144 1e-036
gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. v... 144 4e-034
gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA li... 86 3e-031
gb|AV833846.1|AV833846 AV833846 K. Sato unpublished cDNA li... 91 3e-028
gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subs... 123 9e-028
gb|BU986456.1|BU986456 HF11O19r HF Hordeum vulgare subsp. v... 120 8e-027
gb|BQ460226.1|BQ460226 HA06N23r HA Hordeum vulgare subsp. v... 117 4e-026
gb|AV834211.1|AV834211 AV834211 K. Sato unpublished cDNA li... 108 3e-023
gb|AV834161.1|AV834161 AV834161 K. Sato unpublished cDNA li... 95 6e-021
>gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j21 3', mRNA sequence
Length = 643
Score = 250 bits (540), Expect = 5e-066
Identities = 92/119 (77%), Positives = 107/119 (89%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +WR+QNITE+YH WQKLNE+ LLWKLGTLP GLVTFWN+TFPLDRSWH LGLGY
Sbjct: 497 NVFDLAEWRRQNITELYHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGY 318
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANS 359
NP+V+ +D+ RAAVIHYNGNLKPWLEIGLPK+R YWS +++YDQ FLRECNINP*+ S
Sbjct: 317 NPHVSSRDLERAAVIHYNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECNINP*SKTS 141
Score = 167 bits (359), Expect = 5e-041
Identities = 78/119 (65%), Positives = 84/119 (70%)
Frame = -1 / +1
Query: 358 LFAVQGFMLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARLISLTLTFGLY 179
L + G MLHSRR *S* DQ LR G PISSQGFR PL* MTAAR SL LT GL
Sbjct: 142 LVLLHGLMLHSRRKG*S*SRYFDQ*LRNLGRPISSQGFRLPL*CMTAARSRSLLLTCGL* 321
Query: 178 PSPN*CHERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
P P CH+RSRGNV FQ VTRP GRVPSFH+S S +FCQ W*+SVMFC L S +SN F
Sbjct: 322 PRPRTCHDRSRGNVLFQNVTRPGGRVPSFHSSPSSLSFCQKW*SSVMFCRLHSARSNTF 498
>gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. vulgare cDNA clone HX12J15
5-PRIME, mRNA sequence
Length = 653
Score = 250 bits (540), Expect = 5e-066
Identities = 92/119 (77%), Positives = 107/119 (89%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +WR+QNITE+YH WQKLNE+ LLWKLGTLP GLVTFWN+TFPLDRSWH LGLGY
Sbjct: 510 NVFDLAEWRRQNITELYHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGY 331
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANS 359
NP+V+ +D+ RAAVIHYNGNLKPWLEIGLPK+R YWS +++YDQ FLRECNINP*+ S
Sbjct: 330 NPHVSSRDLERAAVIHYNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECNINP*SKTS 154
Score = 167 bits (359), Expect = 5e-041
Identities = 78/119 (65%), Positives = 84/119 (70%)
Frame = -1 / +2
Query: 358 LFAVQGFMLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARLISLTLTFGLY 179
L + G MLHSRR *S* DQ LR G PISSQGFR PL* MTAAR SL LT GL
Sbjct: 155 LVLLHGLMLHSRRKG*S*SRYFDQ*LRNLGRPISSQGFRLPL*CMTAARSRSLLLTCGL* 334
Query: 178 PSPN*CHERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
P P CH+RSRGNV FQ VTRP GRVPSFH+S S +FCQ W*+SVMFC L S +SN F
Sbjct: 335 PRPRTCHDRSRGNVLFQNVTRPGGRVPSFHSSPSSLSFCQKW*SSVMFCRLHSARSNTF 511
>gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j21 5', mRNA sequence
Length = 612
Score = 152 bits (327), Expect(2) = 3e-060
Identities = 55/72 (76%), Positives = 65/72 (90%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +WR+QNITE+YH WQKLNE+ LLWKLGTLP GLVTFWN+TFPLDRSWH LGLGY
Sbjct: 227 NVFDLAEWRRQNITELYHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGY 406
Query: 183 NPNVNVKDIRRA 218
NP+V+ +D+ RA
Sbjct: 407 NPHVSSRDLERA 442
Score = 111 bits (237), Expect(2) = 5e-036
Identities = 48/72 (66%), Positives = 53/72 (73%)
Frame = -1 / -1
Query: 217 ARLISLTLTFGLYPSPN*CHERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFCQVW*TSVM 38
AR SL LT GL P P CH+RSRGNV FQ VTRP GRVPSFH+S S +FCQ W*+SVM
Sbjct: 441 ARSRSLLLTCGL*PRPRTCHDRSRGNVLFQNVTRPGGRVPSFHSSPSSLSFCQKW*SSVM 262
Query: 37 FCFLQSPKSNMF 2
FC L S +SN F
Sbjct: 261 FCRLHSARSNTF 226
Score = 99.1 bits (210), Expect(2) = 3e-060
Identities = 36/44 (81%), Positives = 41/44 (93%)
Frame = +3 / +3
Query: 219 AVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*T 350
AVIHYNGNLKPWLEIGLPK+R YWS +++YDQ FLRECNINP*+
Sbjct: 444 AVIHYNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECNINP*S 575
Score = 59.3 bits (123), Expect(2) = 5e-036
Identities = 30/47 (63%), Positives = 31/47 (65%)
Frame = -1 / -3
Query: 349 VQGFMLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARL 209
+ G MLHSRR *S* DQ LR G PISSQGFR PL* MTA L
Sbjct: 574 LHGLMLHSRRKG*S*SRYFDQ*LRNLGRPISSQGFRLPL*CMTAGTL 434
>gb|AV931472.1|AV931472 AV931472 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19o15 3', mRNA sequence
Length = 635
Score = 218 bits (471), Expect = 2e-056
Identities = 81/103 (78%), Positives = 92/103 (89%)
Frame = +3 / -2
Query: 51 YHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIH 230
YH WQKLNE+ LLWKLGTLP GLVTFWN+TFPLDRSWH LGLGYNP+V+ +D+ RAAVIH
Sbjct: 634 YHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIH 455
Query: 231 YNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANS 359
YNGNLKPWLEIGLPK+R YWS +++YDQ FLRECNINP*+ S
Sbjct: 454 YNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECNINP*SKTS 326
Score = 144 bits (309), Expect = 4e-034
Identities = 68/103 (66%), Positives = 72/103 (69%)
Frame = -1 / +3
Query: 358 LFAVQGFMLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARLISLTLTFGLY 179
L + G MLHSRR *S* DQ LR G PISSQGFR PL* MTAAR SL LT GL
Sbjct: 327 LVLLHGLMLHSRRKG*S*SRYFDQ*LRNLGRPISSQGFRLPL*CMTAARSRSLLLTCGL* 506
Query: 178 PSPN*CHERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFCQVW* 50
P P CH+RSRGNV FQ VTRP GRVPSFH+S S +FCQ W*
Sbjct: 507 PRPRTCHDRSRGNVLFQNVTRPGGRVPSFHSSPSSLSFCQKW* 635
>gb|AV930935.1|AV930935 AV930935 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25o11 3', mRNA sequence
Length = 495
Score = 201 bits (433), Expect = 3e-051
Identities = 75/96 (78%), Positives = 86/96 (89%)
Frame = +3 / -1
Query: 72 NENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKP 251
NE+ LLWKLGTLP GLVTFWN+TFPLDRSWH LGLGYNP+V+ +D+ RAAVIHYNGNLKP
Sbjct: 495 NEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIHYNGNLKP 316
Query: 252 WLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANS 359
WLEIGLPK+R YWS +++YDQ FLRECNINP*+ S
Sbjct: 315 WLEIGLPKFRSYWSKYLDYDQPFLRECNINP*SKTS 208
Score = 130 bits (279), Expect = 5e-030
Identities = 62/92 (67%), Positives = 65/92 (70%)
Frame = -1 / +2
Query: 358 LFAVQGFMLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARLISLTLTFGLY 179
L + G MLHSRR *S* DQ LR G PISSQGFR PL* MTAAR SL LT GL
Sbjct: 209 LVLLHGLMLHSRRKG*S*SRYFDQ*LRNLGRPISSQGFRLPL*CMTAARSRSLLLTCGL* 388
Query: 178 PSPN*CHERSRGNVRFQKVTRPAGRVPSFHNS 83
P P CH+RSRGNV FQ VTRP GRVPSFH+S
Sbjct: 389 PRPRTCHDRSRGNVLFQNVTRPGGRVPSFHSS 484
>gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a14 3', mRNA sequence
Length = 625
Score = 199 bits (429), Expect = 1e-050
Identities = 68/114 (59%), Positives = 93/114 (81%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ NENRLLWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 578 NFFDLNSWRREKSTEQYHYWQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 399
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP 344
NP++++++IR AAV+H+NGN+KPWL+IG+ ++R+ W+ +V+YD F+R+CN P
Sbjct: 398 NPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCNFAP 237
Score = 101 bits (215), Expect = 4e-021
Identities = 57/114 (50%), Positives = 62/114 (54%)
Frame = -1 / +1
Query: 343 GFMLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARLISLTLTFGLYPSPN* 164
G LH R N S* T Q + PISSQGF FPL TAA LIS L GLYP P
Sbjct: 238 GAKLH*RMNESS*STYFVQSCLNWFIPISSQGFIFPLKCTTAAFLISSMLMLGLYPRPRT 417
Query: 163 CHERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
C + SRG V V P G VP+FH+S FSF CQ W SV F LQ +S F
Sbjct: 418 CQDLSRGFVVE*NVINPGGNVPNFHSSRFSF*VCQ*WYCSVDFSLLQELRSKKF 579
>gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006H13f, mRNA sequence
Length = 1018
Score = 195 bits (420), Expect = 2e-049
Identities = 74/114 (64%), Positives = 89/114 (78%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +WR+QNITE+YH WQKLNE+ LLWKLGTLP GLVTFWN+TFPLDRSWH LGLGY
Sbjct: 394 NVFDLAEWRRQNITELYHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGY 573
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP 344
NP+V+ +D+ RAAVIHY G+LKPWLE GLP + + + L +INP
Sbjct: 574 NPHVSSRDLERAAVIHYXGHLKPWLEXGLPSFEATGQSTLTMIXPXLAGMHINP 735
Score = 138 bits (295), Expect = 3e-032
Identities = 61/90 (67%), Positives = 66/90 (73%)
Frame = -1 / -3
Query: 271 GNPISSQGFRFPL*WMTAARLISLTLTFGLYPSPN*CHERSRGNVRFQKVTRPAGRVPSF 92
G PISSQGFR P * MTAAR SL LT GL P P CH+RS GNV FQ VTRP GRVPSF
Sbjct: 662 GRPISSQGFRCPX*CMTAARSRSLLLTCGL*PRPRTCHDRSXGNVLFQNVTRPGGRVPSF 483
Query: 91 HNSLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
H+S S +FCQ W*+SVMFC L S +SN F
Sbjct: 482 HSSPSSLSFCQKW*SSVMFCRLHSARSNTF 393
>gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D07
5-PRIME, mRNA sequence
Length = 529
Score = 194 bits (418), Expect = 4e-049
Identities = 66/110 (60%), Positives = 91/110 (82%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ NENRLLWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 200 NFFDLNSWRREKSTEQYHYWQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 379
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLREC 332
NP++++++IR AAV+H+NGN+KPWL+IG+ ++R+ W+ +V+YD F+R+C
Sbjct: 380 NPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRQLWTKYVDYDDSFIRQC 529
>gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018F09f, mRNA sequence
Length = 856
Score = 190 bits (410), Expect = 5e-048
Identities = 64/113 (56%), Positives = 89/113 (78%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL W+ ++IT +YH WQ +NE+R+LWKLGTLP GL+TF+ T PLD+SWH LGLGY
Sbjct: 25 NIFDLKQWKNKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGY 204
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
NP+++ +I AAV HYNGN+KPWLE+ + KYR YW+ ++ YD ++R CN++
Sbjct: 205 NPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNLS 363
>gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B7 5' similar to 68 kDa
protein, mRNA sequence
Length = 616
Score = 190 bits (410), Expect = 5e-048
Identities = 64/113 (56%), Positives = 89/113 (78%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL W+ ++IT +YH WQ +NE+R+LWKLGTLP GL+TF+ T PLD+SWH LGLGY
Sbjct: 142 NIFDLKQWKNKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGY 321
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
NP+++ +I AAV HYNGN+KPWLE+ + KYR YW+ ++ YD ++R CN++
Sbjct: 322 NPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNLS 480
>gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D065 5-PRIME, mRNA sequence
Length = 786
Score = 190 bits (410), Expect = 5e-048
Identities = 64/113 (56%), Positives = 89/113 (78%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL W+ ++IT +YH WQ +NE+R+LWKLGTLP GL+TF+ T PLD+SWH LGLGY
Sbjct: 181 NIFDLKQWKNKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGY 360
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
NP+++ +I AAV HYNGN+KPWLE+ + KYR YW+ ++ YD ++R CN++
Sbjct: 361 NPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNLS 519
>gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16a24 5', mRNA sequence
Length = 630
Score = 189 bits (408), Expect = 9e-048
Identities = 66/110 (60%), Positives = 86/110 (78%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
NMFDL +W+K+NIT +YH WQ LNE+R LWKLGTLP GL+TF+N T PLD +WH LGLGY
Sbjct: 152 NMFDLKEWKKRNITGIYHYWQNLNEDRKLWKLGTLPPGLITFYNLTHPLDHTWHVLGLGY 331
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLREC 332
+P V++ +I AAV+HYNGN KPWL++ + KY+ YWS +V+ D +R C
Sbjct: 332 DPAVDIAEIENAAVVHYNGNYKPWLDLAISKYKAYWSKYVDVDSSHIRHC 481
>gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16a24 3', mRNA sequence
Length = 565
Score = 189 bits (408), Expect = 9e-048
Identities = 66/110 (60%), Positives = 86/110 (78%)
Frame = +3 / -1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
NMFDL +W+K+NIT +YH WQ LNE+R LWKLGTLP GL+TF+N T PLD +WH LGLGY
Sbjct: 418 NMFDLKEWKKRNITGIYHYWQNLNEDRKLWKLGTLPPGLITFYNLTHPLDHTWHVLGLGY 239
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLREC 332
+P V++ +I AAV+HYNGN KPWL++ + KY+ YWS +V+ D +R C
Sbjct: 238 DPAVDIAEIENAAVVHYNGNYKPWLDLAISKYKAYWSKYVDVDSSHIRHC 89
>gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd23f10, mRNA
sequence
Length = 643
Score = 181 bits (389), Expect = 4e-045
Identities = 60/106 (56%), Positives = 84/106 (79%)
Frame = +3 / -2
Query: 24 WRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVK 203
W+ ++IT +YH WQ +NE+R+LWKLGTLP GL+TF+ T PLD+SWH LGLGYNP+++
Sbjct: 636 WKNKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRS 457
Query: 204 DIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
+I AAV HYNGN+KPWLE+ + KYR YW+ ++ YD ++R CN++
Sbjct: 456 EIDNAAVAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNLS 319
>gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 3', mRNA sequence
Length = 634
Score = 177 bits (380), Expect = 6e-044
Identities = 60/105 (57%), Positives = 83/105 (79%)
Frame = +3 / -1
Query: 27 RKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKD 206
R ++IT +YH WQ +NE+R+LWKLGTLP GL+TF+ T PLD+SWH LGLGYNP+++ +
Sbjct: 631 RTKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSE 452
Query: 207 IRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
I AAV HYNGN+KPWLE+ + KYR YW+ ++ YD ++R CN++
Sbjct: 451 IDNAAVAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNLS 317
>gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 5', mRNA sequence
Length = 598
Score = 171 bits (369), Expect = 2e-042
Identities = 59/97 (60%), Positives = 78/97 (80%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL W+ ++IT +YH WQ +NE+R+LWKLGTLP GL+TF+ T PLD+SWH LGLGY
Sbjct: 308 NIFDLKQWKNKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGY 487
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWS 293
NP+++ +I AAV HYNGN+KPWLE+ + KYR YW+
Sbjct: 488 NPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWT 598
>gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o03 5', mRNA sequence
Length = 586
Score = 171 bits (368), Expect = 3e-042
Identities = 58/95 (61%), Positives = 81/95 (85%)
Frame = +3 / +2
Query: 60 WQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNG 239
WQ NENRLLWKLGTLP GL+TF++ T PLD+SWH LGLGYNP++++++IR AAV+H+NG
Sbjct: 8 WQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNG 187
Query: 240 NLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP 344
N+KPWL+IG+ ++R+ W+ +V+YD F+R+CN P
Sbjct: 188 NMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCNFAP 292
>gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o03 3', mRNA sequence
Length = 527
Score = 171 bits (368), Expect = 3e-042
Identities = 58/95 (61%), Positives = 81/95 (85%)
Frame = +3 / -2
Query: 60 WQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNG 239
WQ NENRLLWKLGTLP GL+TF++ T PLD+SWH LGLGYNP++++++IR AAV+H+NG
Sbjct: 520 WQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNG 341
Query: 240 NLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP 344
N+KPWL+IG+ ++R+ W+ +V+YD F+R+CN P
Sbjct: 340 NMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCNFAP 236
>gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41d13 5', mRNA sequence
Length = 589
Score = 171 bits (368), Expect = 3e-042
Identities = 58/95 (61%), Positives = 81/95 (85%)
Frame = +3 / +2
Query: 60 WQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNG 239
WQ NENRLLWKLGTLP GL+TF++ T PLD+SWH LGLGYNP++++++IR AAV+H+NG
Sbjct: 11 WQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNG 190
Query: 240 NLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP 344
N+KPWL+IG+ ++R+ W+ +V+YD F+R+CN P
Sbjct: 191 NMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCNFAP 295
>gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41d13 3', mRNA sequence
Length = 525
Score = 171 bits (368), Expect = 3e-042
Identities = 58/95 (61%), Positives = 81/95 (85%)
Frame = +3 / -1
Query: 60 WQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNG 239
WQ NENRLLWKLGTLP GL+TF++ T PLD+SWH LGLGYNP++++++IR AAV+H+NG
Sbjct: 519 WQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNG 340
Query: 240 NLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP 344
N+KPWL+IG+ ++R+ W+ +V+YD F+R+CN P
Sbjct: 339 NMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCNFAP 235
>gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016D06f, mRNA sequence
Length = 490
Score = 164 bits (353), Expect = 3e-040
Identities = 58/110 (52%), Positives = 80/110 (72%)
Frame = +3 / +3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WRK N T +YH WQ+ N ++LLW+ GTLPAGL+TF+ PLDR WH LGLGY
Sbjct: 60 NIFDLIAWRKANATSLYHYWQEQNADQLLWRTGTLPAGLLTFYGLMEPLDRRWHLLGLGY 239
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLREC 332
+ +++ + I AAV+HYNGN+KPWL++ + +Y+ W HVN+ +REC
Sbjct: 240 DVDIDDRLIESAAVVHYNGNMKPWLKLAIHRYKSIWERHVNFSHPHIREC 389
>gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_G13 5', mRNA sequence
Length = 523
Score = 163 bits (350), Expect = 9e-040
Identities = 55/94 (58%), Positives = 75/94 (79%)
Frame = +3 / +2
Query: 60 WQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNG 239
WQ +NE+R+LWKLGTLP GL+TF+ T PLD+SWH LGLGYNP+++ +I AAV HYNG
Sbjct: 2 WQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAHYNG 181
Query: 240 NLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
N+KPWLE+ + KYR YW+ ++ YD ++R CN++
Sbjct: 182 NMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNLS 283
>gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10L09
5-PRIME, mRNA sequence
Length = 684
Score = 160 bits (343), Expect = 8e-039
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +3 / +3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
NMFDL +W+K++IT +YH WQ +NENRLLWKLGTLP GL+TF+ T PLD+SWH LGLGY
Sbjct: 432 NMFDLEEWKKKDITGIYHKWQNMNENRLLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGY 611
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPW 254
NP V +I AAVIHYNGN+KPW
Sbjct: 612 NPTVEHAEIDTAAVIHYNGNMKPW 683
Score = 119 bits (254), Expect = 2e-026
Identities = 51/83 (61%), Positives = 58/83 (69%)
Frame = -1 / -3
Query: 250 GFRFPL*WMTAARLISLTLTFGLYPSPN*CHERSRGNVRFQKVTRPAGRVPSFHNSLFSF 71
GF FPL*WMTAA IS T GLYP+P+ CH+ SRG V KV RP G VPSFH+SLFSF
Sbjct: 679 GFMFPL*WMTAAVSISACSTVGLYPNPSTCHDLSRGCVSL*KVMRPGGSVPSFHSSLFSF 500
Query: 70 NFCQVW*TSVMFCFLQSPKSNMF 2
FC +W* VM F S +SN+F
Sbjct: 499 MFCHLW*IPVMSFFFHSSRSNIF 431
>gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025O15f, mRNA sequence
Length = 674
Score = 157 bits (337), Expect = 5e-038
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WRK N T +YH WQ+ N ++LLW+ GTLPAGL+TF+ PLDR WH LGLGY
Sbjct: 238 NIFDLIAWRKANATSLYHYWQEQNADQLLWRTGTLPAGLLTFYGLMEPLDRRWHLLGLGY 417
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRE 329
+ +++ + I AAV+HYNGN+KPWL++ + Y+ W A VN+ +RE
Sbjct: 418 DVDIDDRLIESAAVVHYNGNMKPWLKLAIHPYKSIWGADVNFSHPHIRE 564
>gb|BE060385.2|BE060385 HVSMEg0012C17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0012C17f, mRNA sequence
Length = 785
Score = 144 bits (310), Expect(2) = 1e-036
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +WR+QNITE+YH WQKLNE+ LLWKLGTLP GLVTFWN+TFPLDRSWH LGLGY
Sbjct: 394 NVFDLAEWRRQNITELYHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGY 573
Query: 183 NPNVN 197
NP+V+
Sbjct: 574 NPHVS 588
Score = 106 bits (226), Expect(2) = 5e-024
Identities = 44/65 (67%), Positives = 49/65 (75%)
Frame = -1 / -1
Query: 196 LTFGLYPSPN*CHERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLQSP 17
LT GL P P CH+RSRGNV FQ VTRP GRVPSFH+S S +FCQ W*+SVMFC L S
Sbjct: 587 LTCGL*PRPRTCHDRSRGNVLFQNVTRPGGRVPSFHSSPSSLSFCQKW*SSVMFCRLHSA 408
Query: 16 KSNMF 2
+SN F
Sbjct: 407 RSNTF 393
Score = 28.1 bits (55), Expect(2) = 1e-036
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / +3
Query: 237 GNLKPWLEIGLPKYRK 284
G L PWL GLPK+ K
Sbjct: 630 GTLNPWLGNGLPKFPK 677
Score = 24.0 bits (46), Expect(2) = 5e-024
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1 / -2
Query: 271 GNPISSQGFRFPL 233
G P SQGFR P+
Sbjct: 664 GRPFPSQGFRVPM 626
>gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. vulgare cDNA clone HM10N01
3-PRIME, mRNA sequence
Length = 535
Score = 144 bits (309), Expect = 4e-034
Identities = 48/83 (57%), Positives = 71/83 (85%)
Frame = +3 / -3
Query: 96 LGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPK 275
LGTLP GL+TF++ T PLD+SWH LGLGYNP++++++IR AAV+H+NGN+KPWL+IG+ +
Sbjct: 533 LGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQ 354
Query: 276 YRKYWSAHVNYDQVFLRECNINP 344
+R+ W+ +V+YD F+R+CN P
Sbjct: 353 FRQLWTKYVDYDDSFIRQCNFAP 285
>gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g13 3', mRNA sequence
Length = 703
Score = 86.3 bits (182), Expect(2) = 3e-031
Identities = 30/60 (50%), Positives = 41/60 (68%)
Frame = +3 / -1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+ DL +WR +N+T +YH WQ+ N + LWKLG+LP GL+ F+ L+ WH LGLGY
Sbjct: 694 NVLDLVEWRNKNVTGIYHYWQERNADHTLWKLGSLPPGLLAFYGLVEALNPKWHVLGLGY 515
Score = 68.4 bits (143), Expect(2) = 3e-031
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +3 / -1
Query: 192 VNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLREC 332
V+ I+ AV+HYNGNLKPWL+IG+ KY+ +W +V+Y L+ C
Sbjct: 508 VDPDTIKEGAVLHYNGNLKPWLKIGMEKYKGFWDNYVDYSHPLLQRC 368
>gb|AV833846.1|AV833846 AV833846 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags20p21, mRNA sequence
Length = 494
Score = 90.9 bits (192), Expect(3) = 3e-028
Identities = 31/67 (46%), Positives = 43/67 (64%)
Frame = +3 / +3
Query: 63 QKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGN 242
+ L LWK GTLP L+ F +D SWH LGLGY + +++ +++AAV+HYNG
Sbjct: 183 ENLKAGLTLWKFGTLPPALIAFRGHVHGIDPSWHMLGLGYQESTDIESVKKAAVVHYNGQ 362
Query: 243 LKPWLEI 263
KPWL+I
Sbjct: 363 CKPWLDI 383
Score = 39.6 bits (80), Expect(3) = 3e-028
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3 / +3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLN 74
N+FDL WRK NI + YH W K N
Sbjct: 117 NVFDLEAWRKTNIRDTYHFWLKEN 188
Score = 31.8 bits (63), Expect(3) = 3e-028
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3 / +1
Query: 285 YWSAHVNYDQVFLRECNI 338
+W+ HVNY F+R C+I
Sbjct: 406 FWTKHVNYSNDFIRNCHI 459
>gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078D03F1, mRNA sequence
Length = 447
Score = 123 bits (263), Expect = 9e-028
Identities = 41/75 (54%), Positives = 58/75 (77%)
Frame = +3 / +1
Query: 117 LVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSA 296
L+TF+ T PLD+SWH LGLGYNP+++ +I AAV HYNGN+KPWLE+ + KYR YW+
Sbjct: 7 LMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWTR 186
Query: 297 HVNYDQVFLRECNIN 341
++ YD ++R CN++
Sbjct: 187 YIKYDHPYIRGCNLS 231
>gb|BU986456.1|BU986456 HF11O19r HF Hordeum vulgare subsp. vulgare cDNA clone HF11O19
5-PRIME, mRNA sequence
Length = 478
Score = 120 bits (256), Expect = 8e-027
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = +3 / +3
Query: 87 LWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIG 266
L LPAGL+TF+ T PLD+SWH +GLGYNP+++ + IR AAVIH+NGN+KPWL++
Sbjct: 27 LGSTSVLPAGLMTFYGNTKPLDKSWHVMGLGYNPSISPEVIRGAAVIHFNGNMKPWLDVA 206
Query: 267 LPKYRKYWSAHVNYDQVFLRECN 335
+Y+ W+ HV+ + FL CN
Sbjct: 207 FNQYKALWTKHVDTEMEFLTLCN 275
>gb|BQ460226.1|BQ460226 HA06N23r HA Hordeum vulgare subsp. vulgare cDNA clone HA06N23
5-PRIME, mRNA sequence
Length = 567
Score = 117 bits (251), Expect = 4e-026
Identities = 39/84 (46%), Positives = 55/84 (65%)
Frame = +3 / +2
Query: 87 LWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIG 266
LWK GTLP L+ F +D SWH LGLGY + +++ +++AAV+HYNG KPWL+I
Sbjct: 23 LWKFGTLPPALIAFRGHVHGIDPSWHMLGLGYQESTDIESVKKAAVVHYNGQCKPWLDIA 202
Query: 267 LPKYRKYWSAHVNYDQVFLRECNI 338
+ +W+ HVNY F+R C+I
Sbjct: 203 FKNLQPFWTKHVNYSNDFIRNCHI 274
>gb|AV834211.1|AV834211 AV834211 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags7a24, mRNA sequence
Length = 663
Score = 108 bits (230), Expect = 3e-023
Identities = 40/92 (43%), Positives = 59/92 (64%)
Frame = +3 / -1
Query: 72 NENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKP 251
N++ + LP L++F N +PLD GLGY+ + + IR +A +HYNGN+KP
Sbjct: 648 NDDEASLRAAALPISLLSFQNLVYPLDERLTLSGLGYHYGIEEEVIRTSASLHYNGNMKP 469
Query: 252 WLEIGLPKYRKYWSAHVNYDQVFLRECNINP* 347
WLE+G+P YRKYW + D+ F+ ECN++P*
Sbjct: 468 WLELGIPNYRKYWKRFLARDERFMDECNVSP* 373
>gb|AV834161.1|AV834161 AV834161 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags5h22, mRNA sequence
Length = 714
Score = 95.0 bits (201), Expect(2) = 6e-021
Identities = 34/77 (44%), Positives = 52/77 (67%)
Frame = +3 / -1
Query: 117 LVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSA 296
L++F N +PLD GLGY+ ++ + + +A +HYNGN+KPWLE+G+P Y+KYW
Sbjct: 549 LLSFQNLIYPLDGRSTLSGLGYDYGIDPEVAQSSAALHYNGNMKPWLELGIPDYKKYWRR 370
Query: 297 HVNYDQVFLRECNINP* 347
+ + F+ ECN+NP*
Sbjct: 369 FLTREDRFMDECNVNP* 319
Score = 24.9 bits (48), Expect(2) = 6e-021
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3 / -1
Query: 3 NMFDLGDWRKQNITEVY 53
N+ +L WRK +TE Y
Sbjct: 669 NVINLDKWRKHKVTENY 619
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 273,187,205
Number of Sequences: 312970
Number of extensions: 4126899
Number of successful extensions: 39773
Number of sequences better than 1.0e-020: 41
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6192839514
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)