TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3054736.2.1
(725 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG414688.2|BG414688 HVSMEk0003F21f Hordeum vulgare testa... 130 1e-029
gb|BG416042.1|BG416042 HVSMEk0009I22f Hordeum vulgare testa... 74 1e-027
gb|CK122677.1|CK122677 BES1824105a18 BES1824 Hordeum vulgar... 105 4e-022
>gb|BG414688.2|BG414688 HVSMEk0003F21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0003F21f, mRNA sequence
Length = 625
Score = 130 bits (278), Expect = 1e-029
Identities = 50/95 (52%), Positives = 68/95 (71%)
Frame = +3 / +3
Query: 69 MHASGSLYALSSEVVEALATAKSDSLRMFDYEDVTIGAWMLAMNVKHEDNRAMCDSVCTP 248
+HA G +YALS++VV +L +++S RMF+ EDVTIG+WMLAMNV HE+ A+C+ CT
Sbjct: 3 LHAYGPIYALSADVVASLVALRNNSFRMFNNEDVTIGSWMLAMNVNHENTHALCEPECTA 182
Query: 249 TSIAVWDSKKCSGTCNVADKIKQLHNTTVCSKSPT 353
+SIAVWD KCSG C+ K+ +LH C+ PT
Sbjct: 183 SSIAVWDIPKCSGLCHPEVKMLELHRRKECTGGPT 287
>gb|BG416042.1|BG416042 HVSMEk0009I22f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009I22f, mRNA sequence
Length = 1066
Score = 73.9 bits (155), Expect(2) = 1e-027
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +3 / +2
Query: 3 VVNDPNLKWYESSWELLGNEYFMHASGSLYALSSEVVEALATAKSDSLRMFDYEDV 170
V DP LKW E LLG+EYF+HA G +YALS++VV +L +++S RMF+ EDV
Sbjct: 50 VFTDPKLKWCEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFNNEDV 217
Score = 68.9 bits (144), Expect(2) = 1e-027
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +3 / +3
Query: 168 VTIGAWMLAMNVKHEDNRAMCDSVCTPTSIAVWDSKKCSGTCNVADK 308
+TIG+WMLAMNV HE+ A+C+ C SIA WD KCSG C+ K
Sbjct: 216 LTIGSWMLAMNVNHENPHALCEPECNGFSIADWDIPKCSGLCHPKGK 356
>gb|CK122677.1|CK122677 BES1824105a18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A185 5-PRIME, mRNA sequence
Length = 627
Score = 105 bits (223), Expect = 4e-022
Identities = 40/72 (55%), Positives = 51/72 (70%)
Frame = +3 / +1
Query: 138 DSLRMFDYEDVTIGAWMLAMNVKHEDNRAMCDSVCTPTSIAVWDSKKCSGTCNVADKIKQ 317
+S RMF+ EDVTIG+WMLAMNV HE+ A+C+ CT +SIAVWD KCSG C+ K+ +
Sbjct: 1 NSFRMFNNEDVTIGSWMLAMNVNHENTHALCEPECTASSIAVWDIPKCSGLCHPEVKMLE 180
Query: 318 LHNTTVCSKSPT 353
LH C+ PT
Sbjct: 181 LHRRKECTGGPT 216
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 358,724,864
Number of Sequences: 312970
Number of extensions: 5237476
Number of successful extensions: 41348
Number of sequences better than 1.0e-020: 4
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8059174710
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)