TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023585.2.1
(635 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA li... 237 3e-069
gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. v... 193 1e-057
gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA li... 193 1e-055
gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. v... 193 1e-055
gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. v... 193 1e-055
gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA li... 193 1e-055
gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa... 193 3e-055
gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. v... 174 1e-051
gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA li... 195 2e-049
gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. v... 178 8e-049
gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA li... 190 7e-048
gb|BJ457634.1|BJ457634 BJ457634 K. Sato unpublished cDNA li... 148 2e-039
gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. v... 158 3e-038
gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, ... 157 4e-038
gb|BJ458585.1|BJ458585 BJ458585 K. Sato unpublished cDNA li... 120 5e-033
gb|BJ450210.1|BJ450210 BJ450210 K. Sato unpublished cDNA li... 117 4e-032
gb|CA028206.1|CA028206 HZ61F01r HZ Hordeum vulgare subsp. v... 113 1e-031
emb|AJ234606.1|HVU234606 Hordeum vulgare genomic DNA fragme... 93 2e-029
gb|CK122310.1|CK122310 BES1824102n07 BES1824 Hordeum vulgar... 97 1e-026
gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. v... 117 4e-026
gb|BG415324.2|BG415324 HVSMEk0006A22f Hordeum vulgare testa... 116 1e-025
gb|CB859263.1|CB859263 HI09O13w HI Hordeum vulgare subsp. v... 116 1e-025
gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 ... 107 3e-025
gb|BQ663666.1|BQ663666 HU03I11u HU Hordeum vulgare subsp. v... 60 3e-025
gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedl... 114 6e-025
gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. v... 107 8e-025
gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA li... 103 1e-024
gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. v... 103 1e-024
gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA li... 103 1e-024
gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA li... 103 1e-024
gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. v... 103 1e-024
gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. v... 103 1e-024
gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. v... 103 1e-024
gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. v... 103 1e-024
gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. v... 103 1e-024
gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. v... 103 1e-024
gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. v... 103 1e-024
gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. v... 100 7e-024
gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. v... 107 5e-023
gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedl... 106 9e-023
gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA li... 97 1e-022
gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. v... 100 3e-022
gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. v... 105 3e-022
>gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 3', mRNA sequence
Length = 589
Score = 237 bits (512), Expect(3) = 3e-069
Identities = 96/105 (91%), Positives = 100/105 (95%)
Frame = +1 / -2
Query: 37 QGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFY 216
QGTSRPAHYHVLWDENNF+ADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFY
Sbjct: 504 QGTSRPAHYHVLWDENNFSADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFY 325
Query: 217 MEPEMSENQTSKSSNGTNGGLVKPLPAVKEKVKRVMFYC*RGDRF 351
MEPE+SEN TSKSS+GTNG VKPLPAVKEKVKRVMFYC*+ D F
Sbjct: 324 MEPELSENHTSKSSSGTNGTSVKPLPAVKEKVKRVMFYC*QRD*F 190
Score = 193 bits (415), Expect(2) = 5e-052
Identities = 86/100 (86%), Positives = 89/100 (89%)
Frame = -1 / +2
Query: 335 QQ*NITLFTFSFTAGRGFTKPPFVPLELFDVWFSDISGSMXXXXXXXXRCA*YAGGTTET 156
QQ*NITLFTFSFTAG+GFT+ PFVPLELFDVWFSD SGSM RCA*YAGGTTET
Sbjct: 206 QQ*NITLFTFSFTAGKGFTEVPFVPLELFDVWFSDSSGSM*NRARNAARCA*YAGGTTET 385
Query: 155 ERVHRA*V*QRLFVSVCISSAVKLFSSQRTW**AGLLVPW 36
ERVHRA*V*QRLFV+VCISSA KLFSSQRTW**AGLLVPW
Sbjct: 386 ERVHRA*V*QRLFVNVCISSAEKLFSSQRTW**AGLLVPW 505
Score = 136 bits (291), Expect(2) = 1e-033
Identities = 64/101 (63%), Positives = 66/101 (65%)
Frame = +3 / -1
Query: 36 PGNK*ARSLPCPLG*EQFHSRRNANTDKQPLLHLCPVHTLGFCCPSCILRTPGSIPGAVL 215
PG K*A SLPCPLG*EQ SRRNA+ DKQPLLHL VH L F P+CILR G IPGAVL
Sbjct: 505 PGYK*ASSLPCPLG*EQLLSRRNADVDKQPLLHLRTVHALCFRRPTCILRASGCIPGAVL 326
Query: 216 HGTRDVGEPDVEELQWHERRLXXXXXXXXXXXXXXDVLLLT 338
HG VGEP VEELQW E L DVLLLT
Sbjct: 325 HGAGAVGEPHVEELQWDEWYLREAFARCEREGEEGDVLLLT 203
Score = 133 bits (284), Expect(2) = 7e-032
Identities = 63/104 (60%), Positives = 70/104 (67%)
Frame = +2 / -3
Query: 38 REQVGPLTTMSSGMRTISQQTKCKH*QTTFATLMPGAHARFLLSLLHTTHTWQHSGRGST 217
R QVG LTTMSSGMRT SQQTKC+ *QTTFATL GA A F S LH T W HSGRGST
Sbjct: 503 RVQVGQLTTMSSGMRTTSQQTKCRR*QTTFATLTHGARALFPSSHLHITRIWLHSGRGST 324
Query: 218 WNQXXXXXXXXXAPMARTEAW*SPCLL*RRR*KG*CSTADEVTA 349
W++ AP+ R *S C L*+RR*+G*CST D T+
Sbjct: 323 WSRSCRRTTRRRAPVGRMVPP*SLCPL*KRR*RG*CSTVDRGTS 192
Score = 122 bits (262), Expect(2) = 5e-030
Identities = 48/78 (61%), Positives = 54/78 (69%)
Frame = -2 / +3
Query: 268 SCHWXXXXXXXXXSLVPCRTAPGMLPGVRSMQEGQQKPSVCTGHKCSKGCLSVFAFRLL* 89
S HW + PCRTAPGM P R+MQ G++K S CT KCSKGCLS AFRLL
Sbjct: 273 SSHWSSSTCGSPTAPAPCRTAPGMQPDARNMQVGRRKQSACTVRKCSKGCLSTSAFRLLR 452
Query: 88 NCSHPRGHGSERAYLFPG 35
+CSHPRGHGSE AYL+PG
Sbjct: 453 SCSHPRGHGSELAYLYPG 506
Score = 71.2 bits (149), Expect(3) = 3e-028
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = -3 / +1
Query: 144 PGISVAKVVCQCLHFVCCEIVLIPEDMVVSGPTCSL 37
P +SVAKVVCQ LHFVC E+VLIPEDMVVS PTC+L
Sbjct: 397 PCVSVAKVVCQRLHFVC*EVVLIPEDMVVSWPTCTL 504
Score = 64.8 bits (135), Expect(3) = 3e-028
Identities = 27/46 (58%), Positives = 31/46 (67%)
Frame = -3 / +1
Query: 354 VKAVTSSAVEHHPFHLLLHSRQGLHQASVRAIGALRRLVLRHLWFH 217
+K V S VEHHP HLL HS Q LH ++R GALRR+VLR L H
Sbjct: 187 LKLVPLSTVEHHPLHLLFHSGQRLHGGTIRPTGALRRVVLRQLRLH 324
Score = 36.8 bits (74), Expect(3) = 3e-069
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / -1
Query: 1 EFDFYLCSHAGIQG 42
EFDFYLCSHAGI G
Sbjct: 541 EFDFYLCSHAGIPG 500
Score = 31.3 bits (62), Expect(2) = 5e-052
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 37 GFQHDYRGRNQT 2
GFQ DYRGRNQT
Sbjct: 505 GFQRDYRGRNQT 540
Score = 27.6 bits (54), Expect(2) = 5e-030
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -1 / +3
Query: 47 LVPWIPA*LQR*KSN 3
L P IPA*LQR*KSN
Sbjct: 495 LYPGIPA*LQR*KSN 539
Score = 26.7 bits (52), Expect(3) = 3e-028
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 36 DSSMTTEVEIKL 1
DSS+TTEVEIKL
Sbjct: 506 DSSVTTEVEIKL 541
Score = 26.7 bits (52), Expect(3) = 3e-069
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1 / -1
Query: 358 HSHAVANLVGFSRGLD*LSPGTKRKR 435
HS+ + SRGL *+SPG + KR
Sbjct: 181 HSYVPNTVEFSSRGLG*ISPGKEEKR 104
Score = 26.7 bits (52), Expect(2) = 1e-033
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +3 / -3
Query: 3 V*FLPL*SCWNP 38
V*FLPL*S WNP
Sbjct: 539 V*FLPL*SRWNP 504
Score = 24.0 bits (46), Expect(2) = 7e-032
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2 / -2
Query: 2 SLISTSVVMLESR 40
SLISTSVV LES+
Sbjct: 540 SLISTSVVTLESQ 502
>gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. vulgare cDNA clone HX06D16
3-PRIME, mRNA sequence
Length = 635
Score = 193 bits (417), Expect(2) = 1e-057
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +1 / -3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 555 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAY 376
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEP+ S++ + S
Sbjct: 375 YAHLAAFRARFYMEPDTSDSGSMAS 301
Score = 95.5 bits (202), Expect(2) = 7e-024
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = -1 / +2
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM +CA*YAGGT +TERVH A V* +LFV VC SSAV LFSS T **
Sbjct: 320 SEVSGSM*NRARKAAKCA*YAGGTIDTERVHLAYV*HKLFVRVCNSSAVNLFSSHST*** 499
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L +*KSN
Sbjct: 500 AGRLVP*MPAWLHK*KSN 553
Score = 49.2 bits (101), Expect(2) = 1e-057
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1 / -3
Query: 241 QTSKSSNGTNGGLVKPLPAVKEKVKRVMFYC*RGDRFNNHSHAVANL 381
Q +++ V+PLPA+KE VKRVMFYC* G + H +A NL
Sbjct: 282 QGGRNNRAFGNVAVRPLPALKENVKRVMFYC*GGRGYCLHYYANLNL 142
Score = 34.5 bits (69), Expect(2) = 7e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / +2
Query: 341 PRQQ*NITLFTFSFTAGRGFT 279
P Q*N+T FTFSF AGRG T
Sbjct: 182 PP*Q*NMTRFTFSFRAGRGLT 244
>gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39l05 3', mRNA sequence
Length = 673
Score = 193 bits (416), Expect(2) = 1e-055
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1 / -3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 659 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAY 480
Query: 181 YAHLAAFRARFYMEPEMSEN 240
YAHLAAFRARFYMEP+ S++
Sbjct: 479 YAHLAAFRARFYMEPDTSDS 420
Score = 97.7 bits (207), Expect(2) = 9e-023
Identities = 52/78 (66%), Positives = 57/78 (73%)
Frame = -1 / +1
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVHRA V* RLFV VC SSAV LFSSQRT *
Sbjct: 424 SEVSGSM*NRARKAARWA*YAGGTIDTERVHRAYV*HRLFVRVCNSSAVNLFSSQRT**W 603
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L +*KSN
Sbjct: 604 AGRLVP*MPAWLHK*KSN 657
Score = 42.8 bits (87), Expect(2) = 1e-055
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1 / -3
Query: 250 KSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
+SS V+PLPA+KE VKRVMFYC*
Sbjct: 371 RSSTRFGNVAVRPLPALKENVKRVMFYC* 285
Score = 28.6 bits (56), Expect(2) = 9e-023
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1 / +1
Query: 332 Q*NITLFTFSFTAGRGFT 279
Q*N+T TFS AGRG T
Sbjct: 289 Q*NMTRLTFSLRAGRGLT 342
>gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
3-PRIME, mRNA sequence
Length = 645
Score = 193 bits (416), Expect(2) = 1e-055
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1 / -2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 560 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAY 381
Query: 181 YAHLAAFRARFYMEPEMSEN 240
YAHLAAFRARFYMEP+ S++
Sbjct: 380 YAHLAAFRARFYMEPDTSDS 321
Score = 97.7 bits (207), Expect(2) = 9e-023
Identities = 52/78 (66%), Positives = 57/78 (73%)
Frame = -1 / +1
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVHRA V* RLFV VC SSAV LFSSQRT *
Sbjct: 325 SEVSGSM*NRARKAARWA*YAGGTIDTERVHRAYV*HRLFVRVCNSSAVNLFSSQRT**W 504
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L +*KSN
Sbjct: 505 AGRLVP*MPAWLHK*KSN 558
Score = 42.8 bits (87), Expect(2) = 1e-055
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1 / -2
Query: 250 KSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
+SS V+PLPA+KE VKRVMFYC*
Sbjct: 272 RSSTRFGNVAVRPLPALKENVKRVMFYC* 186
Score = 28.6 bits (56), Expect(2) = 9e-023
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1 / +1
Query: 332 Q*NITLFTFSFTAGRGFT 279
Q*N+T TFS AGRG T
Sbjct: 190 Q*NMTRLTFSLRAGRGLT 243
>gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
5-PRIME, mRNA sequence
Length = 624
Score = 193 bits (416), Expect(2) = 1e-055
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 249 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAY 428
Query: 181 YAHLAAFRARFYMEPEMSEN 240
YAHLAAFRARFYMEP+ S++
Sbjct: 429 YAHLAAFRARFYMEPDTSDS 488
Score = 97.7 bits (207), Expect(2) = 9e-023
Identities = 52/78 (66%), Positives = 57/78 (73%)
Frame = -1 / -3
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVHRA V* RLFV VC SSAV LFSSQRT *
Sbjct: 484 SEVSGSM*NRARKAARWA*YAGGTIDTERVHRAYV*HRLFVRVCNSSAVNLFSSQRT**W 305
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L +*KSN
Sbjct: 304 AGRLVP*MPAWLHK*KSN 251
Score = 42.8 bits (87), Expect(2) = 1e-055
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1 / +3
Query: 250 KSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
+SS V+PLPA+KE VKRVMFYC*
Sbjct: 537 RSSTRFGNVAVRPLPALKENVKRVMFYC* 623
Score = 28.6 bits (56), Expect(2) = 9e-023
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1 / -3
Query: 332 Q*NITLFTFSFTAGRGFT 279
Q*N+T TFS AGRG T
Sbjct: 619 Q*NMTRLTFSLRAGRGLT 566
>gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f16 3', mRNA sequence
Length = 588
Score = 193 bits (416), Expect(2) = 1e-055
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1 / -3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 511 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAY 332
Query: 181 YAHLAAFRARFYMEPEMSEN 240
YAHLAAFRARFYMEP+ S++
Sbjct: 331 YAHLAAFRARFYMEPDTSDS 272
Score = 97.7 bits (207), Expect(2) = 9e-023
Identities = 52/78 (66%), Positives = 57/78 (73%)
Frame = -1 / +3
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVHRA V* RLFV VC SSAV LFSSQRT *
Sbjct: 276 SEVSGSM*NRARKAARWA*YAGGTIDTERVHRAYV*HRLFVRVCNSSAVNLFSSQRT**W 455
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L +*KSN
Sbjct: 456 AGRLVP*MPAWLHK*KSN 509
Score = 42.8 bits (87), Expect(2) = 1e-055
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1 / -3
Query: 250 KSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
+SS V+PLPA+KE VKRVMFYC*
Sbjct: 223 RSSTRFGNVAVRPLPALKENVKRVMFYC* 137
Score = 28.6 bits (56), Expect(2) = 9e-023
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1 / +3
Query: 332 Q*NITLFTFSFTAGRGFT 279
Q*N+T TFS AGRG T
Sbjct: 141 Q*NMTRLTFSLRAGRGLT 194
>gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009F13f, mRNA sequence
Length = 970
Score = 193 bits (416), Expect(2) = 3e-055
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 136 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAY 315
Query: 181 YAHLAAFRARFYMEPEMSEN 240
YAHLAAFRARFYMEP+ S++
Sbjct: 316 YAHLAAFRARFYMEPDTSDS 375
Score = 97.7 bits (207), Expect(2) = 9e-023
Identities = 52/78 (66%), Positives = 57/78 (73%)
Frame = -1 / -3
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM R A*YAGGT +TERVHRA V* RLFV VC SSAV LFSSQRT *
Sbjct: 371 SEVSGSM*NRARKAARWA*YAGGTIDTERVHRAYV*HRLFVRVCNSSAVNLFSSQRT**W 192
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP +PA L +*KSN
Sbjct: 191 AGRLVP*MPAWLHK*KSN 138
Score = 41.8 bits (85), Expect(2) = 3e-055
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1 / +2
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V+PLPA+KE VKRVMFYC*
Sbjct: 455 VRPLPALKENVKRVMFYC* 511
Score = 28.6 bits (56), Expect(2) = 9e-023
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1 / -2
Query: 332 Q*NITLFTFSFTAGRGFT 279
Q*N+T TFS AGRG T
Sbjct: 507 Q*NMTRLTFSLRAGRGLT 454
>gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. vulgare cDNA clone HX07K22
3-PRIME, mRNA sequence
Length = 603
Score = 174 bits (374), Expect(2) = 1e-051
Identities = 67/78 (85%), Positives = 73/78 (93%)
Frame = +1 / -3
Query: 22 SHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAF 201
SHAGIQGTSRPAHYHVLWDEN FTADE+QTLTNNLCYTYARCTRSVS+VPPAYYAHLAAF
Sbjct: 601 SHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAF 422
Query: 202 RARFYMEPEMSENQTSKS 255
RARFYMEP+ S++ + S
Sbjct: 421 RARFYMEPDTSDSGSMAS 368
Score = 87.2 bits (184), Expect(2) = 2e-021
Identities = 44/70 (62%), Positives = 50/70 (71%)
Frame = -1 / +3
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++SGSM +CA*YAGGT +TERVH A V* +LFV VC SSAV LFSS T **
Sbjct: 387 SEVSGSM*NRARKAAKCA*YAGGTIDTERVHLAYV*HKLFVRVCNSSAVNLFSSHST*** 566
Query: 56 AGLLVPWIPA 27
AG LVP +PA
Sbjct: 567 AGRLVP*MPA 596
Score = 49.2 bits (101), Expect(2) = 1e-051
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1 / -3
Query: 241 QTSKSSNGTNGGLVKPLPAVKEKVKRVMFYC*RGDRFNNHSHAVANL 381
Q +++ V+PLPA+KE VKRVMFYC* G + H +A NL
Sbjct: 349 QGGRNNRAFGNVAVRPLPALKENVKRVMFYC*GGRGYCLHYYANLNL 209
Score = 34.5 bits (69), Expect(2) = 2e-021
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / +3
Query: 341 PRQQ*NITLFTFSFTAGRGFT 279
P Q*N+T FTFSF AGRG T
Sbjct: 249 PP*Q*NMTRFTFSFRAGRGLT 311
>gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 5', mRNA sequence
Length = 481
Score = 195 bits (421), Expect = 2e-049
Identities = 75/77 (97%), Positives = 77/77 (100%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDENNF+ADEMQTLTNNLCYTYARCTRSVSVVPPAY
Sbjct: 250 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEMQTLTNNLCYTYARCTRSVSVVPPAY 429
Query: 181 YAHLAAFRARFYMEPEM 231
YAHLAAFRARFYMEPE+
Sbjct: 430 YAHLAAFRARFYMEPEL 480
Score = 142 bits (304), Expect = 2e-033
Identities = 55/73 (75%), Positives = 60/73 (82%)
Frame = -2 / -1
Query: 220 PCRTAPGMLPGVRSMQEGQQKPSVCTGHKCSKGCLSVFAFRLL*NCSHPRGHGSERAYLF 41
PCRTAPGM P R+MQ G++K S CT KCSKGCLS AFRLL +CSHPRGHGSE AYL+
Sbjct: 469 PCRTAPGMQPDARNMQVGRRKQSACTVRKCSKGCLSTSAFRLLRSCSHPRGHGSELAYLY 290
Query: 40 PGFQHDYRGRNQT 2
PGFQ DYRGRNQT
Sbjct: 289 PGFQRDYRGRNQT 251
Score = 137 bits (293), Expect = 7e-032
Identities = 65/75 (86%), Positives = 66/75 (88%)
Frame = -1 / -3
Query: 227 SGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW**AGL 48
SGSM RCA*YAGGTTETERVHRA*V*QRLFV+VCISSA KLFSSQRTW**AGL
Sbjct: 476 SGSM*NRARNAARCA*YAGGTTETERVHRA*V*QRLFVNVCISSAEKLFSSQRTW**AGL 297
Query: 47 LVPWIPA*LQR*KSN 3
LVPWIPA*LQR*KSN
Sbjct: 296 LVPWIPA*LQR*KSN 252
Score = 125 bits (268), Expect = 2e-028
Identities = 56/73 (76%), Positives = 58/73 (79%)
Frame = +3 / +3
Query: 3 V*FLPL*SCWNPGNK*ARSLPCPLG*EQFHSRRNANTDKQPLLHLCPVHTLGFCCPSCIL 182
V*FLPL*S WNPG K*A SLPCPLG*EQ SRRNA+ DKQPLLHL VH L F P+CIL
Sbjct: 252 V*FLPL*SRWNPGYK*ASSLPCPLG*EQLLSRRNADVDKQPLLHLRTVHALCFRRPTCIL 431
Query: 183 RTPGSIPGAVLHG 221
R G IPGAVLHG
Sbjct: 432 RASGCIPGAVLHG 470
Score = 124 bits (265), Expect = 5e-028
Identities = 56/75 (74%), Positives = 59/75 (78%)
Frame = +2 / +2
Query: 2 SLISTSVVMLESREQVGPLTTMSSGMRTISQQTKCKH*QTTFATLMPGAHARFLLSLLHT 181
SLISTSVV LESR QVG LTTMSSGMRT SQQTKC+ *QTTFATL GA A F S LH
Sbjct: 251 SLISTSVVTLESRVQVGQLTTMSSGMRTTSQQTKCRR*QTTFATLTHGARALFPSSHLHI 430
Query: 182 THTWQHSGRGSTWNQ 226
T W HSGRGSTW++
Sbjct: 431 TRIWLHSGRGSTWSR 475
>gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. vulgare cDNA clone HB25M17
5-PRIME, mRNA sequence
Length = 506
Score = 178 bits (384), Expect(2) = 8e-049
Identities = 71/89 (79%), Positives = 75/89 (84%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRP HYHVL+DEN FTAD +Q LTNNLCYTYARCTRSVSVVPPAY
Sbjct: 19 EFDFYLCSHAGIQGTSRPTHYHVLFDENGFTADGLQQLTNNLCYTYARCTRSVSVVPPAY 198
Query: 181 YAHLAAFRARFYMEPEMSENQTSKSSNGT 267
YAHLAAFRAR+Y EP + S S GT
Sbjct: 199 YAHLAAFRARYYDEPSEGSDSASIVSGGT 285
Score = 94.5 bits (200), Expect(2) = 5e-021
Identities = 48/61 (78%), Positives = 49/61 (80%)
Frame = -1 / -1
Query: 185 A*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW**AGLLVPWIPA*LQR*KS 6
A* AGGTTETERVHRA V* RL VS C SAVK FSS+RTW** GLLVP IPA L R*KS
Sbjct: 203 A**AGGTTETERVHRAYV*HRLLVSCCSPSAVKPFSSKRTW**VGLLVP*IPAWLHR*KS 24
Query: 5 N 3
N
Sbjct: 23 N 21
Score = 35.0 bits (70), Expect(2) = 8e-049
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1 / +1
Query: 283 KPLPAVKEKVKRVMFYC*RG 342
+PLP +++ VK VMFYC* G
Sbjct: 337 RPLPRIRDNVKEVMFYC*IG 396
Score = 27.2 bits (53), Expect(2) = 5e-021
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1 / -1
Query: 356 LLKRSPRQQ*NITLFTFSFTAGRG 285
L P QQ*NIT T S GRG
Sbjct: 410 LASYGPIQQ*NITSLTLSLILGRG 339
>gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 5', mRNA sequence
Length = 576
Score = 190 bits (409), Expect = 7e-048
Identities = 75/92 (81%), Positives = 80/92 (86%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTAD +QTLTNNLCYTYARCTRSVS+VPPAY
Sbjct: 244 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQTLTNNLCYTYARCTRSVSIVPPAY 423
Query: 181 YAHLAAFRARFYMEPEMSENQTSKSSNGTNGG 276
YAHLAAFRARFYME + S+ + S T G
Sbjct: 424 YAHLAAFRARFYMELDTSDGGSVASGATTGRG 519
Score = 105 bits (223), Expect = 3e-022
Identities = 55/78 (70%), Positives = 58/78 (74%)
Frame = -1 / -2
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
S++S SM R A*YAGGT +TERVH A*V* RLFV VC SAVKLFSSQRTW*
Sbjct: 479 SEVSSSM*NRARKAAR*A*YAGGTIDTERVHLA*V*HRLFVRVCKPSAVKLFSSQRTW*C 300
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG LVP IPA LQR*KSN
Sbjct: 299 AGRLVP*IPAWLQR*KSN 246
>gb|BJ457634.1|BJ457634 BJ457634 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28j10 3', mRNA sequence
Length = 463
Score = 148 bits (318), Expect(2) = 2e-039
Identities = 58/74 (78%), Positives = 63/74 (85%)
Frame = +1 / -2
Query: 55 AHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMS 234
AHYHVLWDENNFTAD +QTLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEP+ S
Sbjct: 462 AHYHVLWDENNFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTS 283
Query: 235 ENQTSKSSNGTNGG 276
+ + S T G
Sbjct: 282 DGGSVASGATTGRG 241
Score = 34.1 bits (68), Expect(2) = 2e-039
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1 / -2
Query: 280 VKPLPAVKEKVKRVMFYC* 336
VKPLP + VKRVMFYC*
Sbjct: 195 VKPLPDLN*NVKRVMFYC* 139
>gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. vulgare cDNA clone HM14N04
5-PRIME, mRNA sequence
Length = 612
Score = 158 bits (339), Expect = 3e-038
Identities = 59/73 (80%), Positives = 67/73 (91%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDF+LCSHAGI+GTSRPAHYHVL D+NNF+AD++Q+LTNNLCYTYA CTRSVS PPAY
Sbjct: 326 EFDFFLCSHAGIKGTSRPAHYHVLRDDNNFSADDLQSLTNNLCYTYASCTRSVSTAPPAY 505
Query: 181 YAHLAAFRARFYM 219
YAH AFRARFY+
Sbjct: 506 YAHKLAFRARFYL 544
>gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_L23 5', mRNA sequence
Length = 670
Score = 157 bits (338), Expect = 4e-038
Identities = 61/67 (91%), Positives = 63/67 (94%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRP HYHVL+DEN FTAD +Q LTNNLCYTYARCTRSVSVVPPAY
Sbjct: 468 EFDFYLCSHAGIQGTSRPTHYHVLFDENGFTADGLQQLTNNLCYTYARCTRSVSVVPPAY 647
Query: 181 YAHLAAF 201
YAHLAAF
Sbjct: 648 YAHLAAF 668
>gb|BJ458585.1|BJ458585 BJ458585 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 3', mRNA sequence
Length = 614
Score = 120 bits (256), Expect(2) = 5e-033
Identities = 49/66 (74%), Positives = 54/66 (81%)
Frame = +1 / -2
Query: 79 ENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTSKSS 258
ENNFTAD +QTLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYME + S+ + S
Sbjct: 613 ENNFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMELDTSDGGSVASG 434
Query: 259 NGTNGG 276
T G
Sbjct: 433 ATTGRG 416
Score = 40.5 bits (82), Expect(2) = 5e-033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1 / -2
Query: 280 VKPLPAVKEKVKRVMFYC* 336
VKPLP +KE VKRVMFYC*
Sbjct: 370 VKPLPDLKENVKRVMFYC* 314
>gb|BJ450210.1|BJ450210 BJ450210 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28j10 5', mRNA sequence
Length = 507
Score = 117 bits (250), Expect(2) = 4e-032
Identities = 47/64 (73%), Positives = 53/64 (82%)
Frame = +1 / +3
Query: 85 NFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTSKSSNG 264
+FTAD +QTLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEP+ S+ + S
Sbjct: 18 HFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDGGSVASGAT 197
Query: 265 TNGG 276
T G
Sbjct: 198 TGRG 209
Score = 40.5 bits (82), Expect(2) = 4e-032
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1 / +3
Query: 280 VKPLPAVKEKVKRVMFYC* 336
VKPLP +KE VKRVMFYC*
Sbjct: 255 VKPLPDLKENVKRVMFYC* 311
>gb|CA028206.1|CA028206 HZ61F01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61F01
5-PRIME, mRNA sequence
Length = 468
Score = 113 bits (241), Expect(2) = 1e-031
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +1 / +1
Query: 94 ADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSEN 240
ADE+QTLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEP+ S++
Sbjct: 1 ADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDS 147
Score = 42.8 bits (87), Expect(2) = 1e-031
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1 / +1
Query: 250 KSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
+SS V+PLPA+KE VKRVMFYC*
Sbjct: 196 RSSTRFGNVAVRPLPALKENVKRVMFYC* 282
>emb|AJ234606.1|HVU234606 Hordeum vulgare genomic DNA fragment; clone MWG0876.uni
Length = 486
Score = 92.7 bits (196), Expect(4) = 2e-029
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +1 / -2
Query: 76 DENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYME 222
DEN F +DE+Q L +NLCYT+ RCTR VS+VPPAYYAHLAA+R R Y+E
Sbjct: 311 DENKFQSDEVQQLIHNLCYTFVRCTRPVSLVPPAYYAHLAAYRGRLYLE 165
Score = 31.8 bits (63), Expect(4) = 2e-029
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / -3
Query: 31 GIQGTSRPAHYHVL 72
G +GTSRP HYH+L
Sbjct: 355 GTKGTSRPTHYHIL 314
Score = 31.3 bits (62), Expect(4) = 2e-029
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1 / -2
Query: 286 PLPAVKEKVKRVMFYC* 336
PLP + + VKR+MFYC*
Sbjct: 101 PLPKLTDSVKRLMFYC* 51
Score = 28.1 bits (55), Expect(4) = 2e-029
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / -1
Query: 1 EFDFYLCSH 27
EFDFYLCSH
Sbjct: 384 EFDFYLCSH 358
>gb|CK122310.1|CK122310 BES1824102n07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N072 5-PRIME, mRNA sequence
Length = 614
Score = 96.8 bits (205), Expect(2) = 1e-026
Identities = 36/41 (87%), Positives = 40/41 (97%)
Frame = +1 / +2
Query: 118 NNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSEN 240
NNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEP+ S++
Sbjct: 2 NNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDS 124
Score = 42.8 bits (87), Expect(2) = 1e-026
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1 / +2
Query: 250 KSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
+SS V+PLPA+KE VKRVMFYC*
Sbjct: 173 RSSTRFGNVAVRPLPALKENVKRVMFYC* 259
>gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. vulgare cDNA clone HB16L19
5-PRIME, mRNA sequence
Length = 470
Score = 117 bits (251), Expect = 4e-026
Identities = 44/50 (88%), Positives = 46/50 (92%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCT 150
EFDFYLCSHAGIQGTSRP HYHVL+DEN FTAD +Q LTNNLCYTYARCT
Sbjct: 319 EFDFYLCSHAGIQGTSRPTHYHVLFDENGFTADGLQQLTNNLCYTYARCT 468
>gb|BG415324.2|BG415324 HVSMEk0006A22f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006A22f, mRNA sequence
Length = 639
Score = 116 bits (248), Expect = 1e-025
Identities = 43/88 (48%), Positives = 61/88 (69%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFYLCSH G+ GTSRP HY+ L DE+ + +D++Q L NLC+ +ARCT+ VS+ P YY
Sbjct: 62 YDFYLCSHNGLIGTSRPTHYYNLMDEHGYGSDDLQRLVYNLCFVFARCTKPVSLATPVYY 241
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGT 267
A LAA+R R Y E ++ +SS+ +
Sbjct: 242 ADLAAYRGRLYYEGMLASQPQVRSSSSS 325
>gb|CB859263.1|CB859263 HI09O13w HI Hordeum vulgare subsp. vulgare cDNA clone HI09O13
3-PRIME, mRNA sequence
Length = 544
Score = 116 bits (248), Expect = 1e-025
Identities = 43/88 (48%), Positives = 61/88 (69%)
Frame = +1 / -2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFYLCSH G+ GTSRP HY+ L DE+ + +D++Q L NLC+ +ARCT+ VS+ P YY
Sbjct: 507 YDFYLCSHNGLIGTSRPTHYYNLMDEHGYGSDDLQRLVYNLCFVFARCTKPVSLATPVYY 328
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGT 267
A LAA+R R Y E ++ +SS+ +
Sbjct: 327 ADLAAYRGRLYYEGMLASQPQVRSSSSS 244
>gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091A07f, mRNA sequence
Length = 1009
Score = 107 bits (229), Expect(2) = 3e-025
Identities = 43/87 (49%), Positives = 57/87 (65%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+C+HAG+ GTSRP HYHVL DE F+ADE+Q ++L Y Y R T ++SV P Y
Sbjct: 223 FDFYMCAHAGMIGTSRPTHYHVLHDEIGFSADELQEFVHSLSYVYQRSTTAISVAAPIAY 402
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +M+ E + +S G
Sbjct: 403 AHLAAAQVGTFMKFEDMSDTSSSQGGG 483
Score = 26.7 bits (52), Expect(2) = 3e-025
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1 / +1
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V LP + EKVK MF+C*
Sbjct: 508 VPELPRLHEKVKSSMFFC* 564
>gb|BQ663666.1|BQ663666 HU03I11u HU Hordeum vulgare subsp. vulgare cDNA clone HU03I11
3-PRIME, mRNA sequence
Length = 562
Score = 59.7 bits (124), Expect(3) = 3e-025
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +1 / -1
Query: 133 TYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSEN 240
T AR RSVS+VPPAYYAHLAAF ARFY E + S++
Sbjct: 397 TNARRIRSVSIVPPAYYAHLAAFWARFYTETDTSDS 290
Score = 52.4 bits (108), Expect(3) = 3e-025
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +1 / -2
Query: 58 HYHVLWDENNFTADEMQTLTNNLCYT 135
HY VLW+EN FTADE+QT NN CYT
Sbjct: 477 HYLVLWNENKFTADELQTPKNNSCYT 400
Score = 40.0 bits (81), Expect(3) = 3e-025
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +1 / -1
Query: 1 EFDFYLCSHAGIQGTSRPA 57
EFD Y+C++AGIQGTS+PA
Sbjct: 535 EFDCYICTNAGIQGTSQPA 479
>gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006I15f, mRNA sequence
Length = 679
Score = 114 bits (243), Expect = 6e-025
Identities = 43/53 (81%), Positives = 47/53 (88%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSV 159
EFDFYLC+HAGIQGTSRPA+YHVLWDEN FTADE+QTL LCY YA+ TRSV
Sbjct: 425 EFDFYLCNHAGIQGTSRPANYHVLWDENKFTADELQTLKKKLCYNYAKGTRSV 583
>gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. vulgare cDNA clone HB31N05
5-PRIME, mRNA sequence
Length = 617
Score = 107 bits (229), Expect(2) = 8e-025
Identities = 43/87 (49%), Positives = 57/87 (65%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+C+HAG+ GTSRP HYHVL DE F+ADE+Q ++L Y Y R T ++SV P Y
Sbjct: 167 FDFYMCAHAGMIGTSRPTHYHVLHDEIGFSADELQEFVHSLSYVYQRSTTAISVAAPIAY 346
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +M+ E + +S G
Sbjct: 347 AHLAAAQVGTFMKFEDMSDTSSSQGGG 427
Score = 25.4 bits (49), Expect(2) = 8e-025
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +2
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V LP + EKV+ MF+C*
Sbjct: 452 VPELPRLHEKVRSSMFFC* 508
>gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p11 3', mRNA sequence
Length = 702
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / -3
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 628 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 449
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 448 AHLAAAQVAQFIKFDEMSETSSSQGGG 368
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -3
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 358 TASGPVQELPRLHEKVRSSMFFC* 287
>gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
3-PRIME, mRNA sequence
Length = 674
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / -1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 620 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 441
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 440 AHLAAAQVAQFIKFDEMSETSSSQGGG 360
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -1
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 350 TASGPVQELPRLHEKVRSSMFFC* 279
>gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 3', mRNA sequence
Length = 662
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / -2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 586 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 407
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 406 AHLAAAQVAQFIKFDEMSETSSSQGGG 326
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -2
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 316 TASGPVQELPRLHEKVRSSMFFC* 245
>gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17h21 3', mRNA sequence
Length = 653
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / -2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 610 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 431
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 430 AHLAAAQVAQFIKFDEMSETSSSQGGG 350
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -2
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 340 TASGPVQELPRLHEKVRSSMFFC* 269
>gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
5-PRIME, mRNA sequence
Length = 647
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 151 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 330
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 331 AHLAAAQVAQFIKFDEMSETSSSQGGG 411
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / +1
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 421 TASGPVQELPRLHEKVRSSMFFC* 492
>gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. vulgare cDNA clone HX11F07
3-PRIME, mRNA sequence
Length = 641
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / -2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 529 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 350
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 349 AHLAAAQVAQFIKFDEMSETSSSQGGG 269
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -2
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 259 TASGPVQELPRLHEKVRSSMFFC* 188
>gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. vulgare cDNA clone HX05B15
3-PRIME, mRNA sequence
Length = 626
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / -1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 572 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 393
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 392 AHLAAAQVAQFIKFDEMSETSSSQGGG 312
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -1
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 302 TASGPVQELPRLHEKVRSSMFFC* 231
>gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. vulgare cDNA clone HX09P10
3-PRIME, mRNA sequence
Length = 626
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / -1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 572 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 393
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 392 AHLAAAQVAQFIKFDEMSETSSSQGGG 312
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -1
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 302 TASGPVQELPRLHEKVRSSMFFC* 231
>gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. vulgare cDNA clone HB01M23
5-PRIME, mRNA sequence
Length = 581
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / -1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 575 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 396
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 395 AHLAAAQVAQFIKFDEMSETSSSQGGG 315
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -1
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 305 TASGPVQELPRLHEKVRSSMFFC* 234
>gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. vulgare cDNA clone HB11G01
5-PRIME, mRNA sequence
Length = 548
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / +3
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 114 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 293
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 294 AHLAAAQVAQFIKFDEMSETSSSQGGG 374
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / +3
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 384 TASGPVQELPRLHEKVRSSMFFC* 455
>gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. vulgare cDNA clone HB17I20
5-PRIME, mRNA sequence
Length = 502
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 89 YDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 268
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 269 AHLAAAQVAQFIKFDEMSETSSSQGGG 349
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / +2
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 359 TASGPVQELPRLHEKVRSSMFFC* 430
>gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. vulgare cDNA clone HX10N18
3-PRIME, mRNA sequence
Length = 676
Score = 100 bits (214), Expect(2) = 7e-024
Identities = 38/87 (43%), Positives = 57/87 (65%)
Frame = +1 / -1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
+DFY+C+HAG+ GT+ P HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P Y
Sbjct: 619 YDFYMCAHAGMIGTTXPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICY 440
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +++ + +S G
Sbjct: 439 AHLAAAQVAQFIKFDEMSETSSSQGGG 359
Score = 29.0 bits (57), Expect(2) = 7e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -1
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 349 TASGPVQELPRLHEKVRSSMFFC* 278
>gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF08J07
5-PRIME, mRNA sequence
Length = 493
Score = 107 bits (229), Expect = 5e-023
Identities = 43/87 (49%), Positives = 57/87 (65%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+C+HAG+ GTSRP HYHVL DE F+ADE+Q ++L Y Y R T ++SV P Y
Sbjct: 199 FDFYMCAHAGMIGTSRPTHYHVLHDEIGFSADELQEFVHSLSYVYQRSTTAISVAAPIAY 378
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNG 264
AHLAA + +M+ E + +S G
Sbjct: 379 AHLAAAQVGTFMKFEDMSDTSSSQGGG 459
>gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009N21f, mRNA sequence
Length = 727
Score = 106 bits (227), Expect = 9e-023
Identities = 45/109 (41%), Positives = 64/109 (58%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+C+HAG+ GTSRP HYHVL DE F+ADE+Q ++L Y Y R T ++SV P Y
Sbjct: 386 FDFYMCAHAGMIGTSRPTHYHVLHDEIGFSADELQEFVHSLSYVYQRSTTAISVAAPIAY 565
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGGLVKPLPAVKEKVKRVMFY 330
AH+AA +M+ E + +S G +P + ++VM +
Sbjct: 566 AHMAAAHVGTFMKFEDMSDTSSSHGGGHTSVGSASVPELASLHEKVMSF 712
>gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19h01 3', mRNA sequence
Length = 607
Score = 96.8 bits (205), Expect(2) = 1e-022
Identities = 37/84 (44%), Positives = 55/84 (65%)
Frame = +1 / -1
Query: 13 YLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHL 192
Y+C+HAG+ GT+RP HYH+L DE +F AD++Q L ++L Y Y R T ++SVV P YAHL
Sbjct: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428
Query: 193 AAFRARFYMEPEMSENQTSKSSNG 264
AA + +++ + +S G
Sbjct: 427 AAAQVAQFIKFDEMSETSSSQGGG 356
Score = 29.0 bits (57), Expect(2) = 1e-022
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -1
Query: 265 TNGGLVKPLPAVKEKVKRVMFYC* 336
T G V+ LP + EKV+ MF+C*
Sbjct: 346 TASGPVQELPRLHEKVRSSMFFC* 275
>gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. vulgare cDNA clone HI02D22
5-PRIME, mRNA sequence
Length = 615
Score = 100 bits (214), Expect(2) = 3e-022
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
++DFY+C+HAG GTSRP HYHVL D+ FT DE+Q L +L Y Y R T ++SVV P
Sbjct: 187 QYDFYMCAHAGPIGTSRPTHYHVLLDQIGFTPDELQKLVLSLSYVYQRSTTAISVVAPIC 366
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAA + +++ E + +S S
Sbjct: 367 YAHLAAAQMSQFIKFEEFADTSSGS 441
Score = 23.5 bits (45), Expect(2) = 3e-022
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1 / +1
Query: 259 NGTNGGLVKPLPAVKEKVKRVMFYC*RG 342
+ + V LP + V MF+C*RG
Sbjct: 451 SSSTAATVPELPRLHSDVCSSMFFC*RG 534
>gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. vulgare cDNA clone HB27H05
5-PRIME, mRNA sequence
Length = 461
Score = 105 bits (223), Expect = 3e-022
Identities = 42/82 (51%), Positives = 56/82 (68%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY+C+HAG+ GTSRP HYHVL DE F+ADE+Q ++L Y Y R T ++SV P Y
Sbjct: 214 FDFYMCAHAGMIGTSRPTHYHVLHDEIGFSADELQEFVHSLSYVYQRSTTAISVAAPIAY 393
Query: 184 AHLAAFRARFYMEPEMSENQTS 249
AHLAA + +M+ E + +S
Sbjct: 394 AHLAAAQVGTFMKFEDMSDTSS 459
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 302,188,181
Number of Sequences: 312970
Number of extensions: 4630966
Number of successful extensions: 52125
Number of sequences better than 1.0e-020: 55
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6786673440
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)