TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.2
(1044 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE603265.2|BE603265 HVSMEh0102N13f Hordeum vulgare 5-45 ... 328 e-101
gb|BU987338.1|BU987338 HF14H19r HF Hordeum vulgare subsp. v... 326 e-100
gb|BQ463836.1|BQ463836 HG01J11r HG Hordeum vulgare subsp. v... 316 5e-097
gb|CA030550.1|CA030550 HX07G08r HX Hordeum vulgare subsp. v... 308 1e-085
gb|AL503276.1|AL503276 AL503276 Hordeum vulgare Barke roots... 310 7e-084
gb|BU987425.1|BU987425 HF14L15r HF Hordeum vulgare subsp. v... 310 7e-084
gb|CA019755.1|CA019755 HV13A06r HV Hordeum vulgare subsp. v... 310 7e-084
gb|AV916398.1|AV916398 AV916398 K. Sato unpublished cDNA li... 292 3e-078
gb|BE559134.1|BE559134 HV_CEb0023A15f Hordeum vulgare seedl... 207 3e-065
gb|BE194848.2|BE194848 HVSMEh0087D14f Hordeum vulgare 5-45 ... 243 2e-063
gb|AV917913.1|AV917913 AV917913 K. Sato unpublished cDNA li... 225 4e-058
gb|BQ470302.1|BQ470302 HX02H13r HX Hordeum vulgare subsp. v... 223 1e-057
gb|CA024250.1|CA024250 HZ48M15r HZ Hordeum vulgare subsp. v... 204 9e-052
gb|CB875139.1|CB875139 HX07G08w HX Hordeum vulgare subsp. v... 107 6e-035
gb|BF623807.2|BF623807 HVSMEa0007B05f Hordeum vulgare seedl... 133 2e-030
gb|BM816042.1|BM816042 HC110A01_T3.ab1 HC Hordeum vulgare s... 133 2e-030
gb|BQ768743.1|BQ768743 EBro08_SQ012_F15_R root, 3 week, dro... 133 2e-030
gb|BI952411.1|BI952411 HVSMEm0006F13f Hordeum vulgare green... 130 1e-029
gb|BQ466175.1|BQ466175 HT01M19T HT Hordeum vulgare subsp. v... 130 1e-029
gb|BM368471.2|BM368471 EBem08_SQ002_G11_R embryo, 40 DPA, n... 130 1e-029
gb|BM368765.2|BM368765 EBem08_SQ004_I17_R embryo, 40 DPA, n... 130 1e-029
gb|BU985299.1|BU985299 HF06L17r HF Hordeum vulgare subsp. v... 130 1e-029
gb|BU985771.1|BU985771 HF08J06r HF Hordeum vulgare subsp. v... 130 1e-029
gb|BU997629.1|BU997629 HI08I18r HI Hordeum vulgare subsp. v... 130 1e-029
gb|CA011445.1|CA011445 HT05L12u HT Hordeum vulgare subsp. v... 130 1e-029
gb|CA012015.1|CA012015 HT04D03r HT Hordeum vulgare subsp. v... 130 1e-029
gb|CA012540.1|CA012540 HT05L12r HT Hordeum vulgare subsp. v... 130 1e-029
gb|CB858860.1|CB858860 HI08I18w HI Hordeum vulgare subsp. v... 130 1e-029
gb|BQ459902.1|BQ459902 HA07M09r HA Hordeum vulgare subsp. v... 127 1e-028
gb|BU996496.1|BU996496 HM13M20r HM Hordeum vulgare subsp. v... 126 2e-028
gb|BU996712.1|BU996712 HM14H24r HM Hordeum vulgare subsp. v... 126 2e-028
gb|BM816057.1|BM816057 HC03F05_T3.ab1 HC Hordeum vulgare su... 125 4e-028
gb|BU985293.1|BU985293 HF06L06r HF Hordeum vulgare subsp. v... 111 1e-024
gb|BU986482.1|BU986482 HF11P23r HF Hordeum vulgare subsp. v... 88 1e-024
gb|BQ665185.1|BQ665185 HX02H13u HX Hordeum vulgare subsp. v... 72 3e-024
gb|AU090054.2|AU090054 AU090054 Hordeum vulgare subsp. vulg... 109 2e-023
gb|AU090079.1|AU090079 AU090079 Hordeum vulgare subsp. vulg... 109 2e-023
gb|BF064571.2|BF064571 HV_CEb0015O16f Hordeum vulgare seedl... 92 4e-022
gb|BU985540.1|BU985540 HF07O06r HF Hordeum vulgare subsp. v... 105 6e-022
gb|CA004284.1|CA004284 HS17C06r HS Hordeum vulgare subsp. v... 103 2e-021
>gb|BE603265.2|BE603265 HVSMEh0102N13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102N13f, mRNA sequence
Length = 729
Score = 328 bits (710), Expect(2) = e-101
Identities = 129/150 (86%), Positives = 137/150 (91%)
Frame = +2 / +3
Query: 86 GGAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYS 265
GG +MGSGSFLKVLAKNFDVLAGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYS
Sbjct: 18 GGCGREMGSGSFLKVLAKNFDVLAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYS 197
Query: 266 FITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVNIWY 445
FITLFELTFAPI+EWLPFW Y KLFFNCWLV P FNGAAYVY+HF RPMFVNRQIVNIWY
Sbjct: 198 FITLFELTFAPILEWLPFWPYGKLFFNCWLVFPCFNGAAYVYEHFARPMFVNRQIVNIWY 377
Query: 446 IPRNEKLGKSDDVLSAAERYIEQNGPEAFE 535
+PR +KL K DDVLSAAE+YIE NGPEAFE
Sbjct: 378 VPRKDKLSKPDDVLSAAEKYIELNGPEAFE 467
Score = 274 bits (592), Expect(2) = 2e-080
Identities = 125/153 (81%), Positives = 131/153 (85%)
Frame = -1 / -3
Query: 543 MSFSNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQ 364
+SFSNASGPF SIY SAA+ TSS L + SFLG Y M TIWRFTNIGR K S*T*AAPL Q
Sbjct: 475 ISFSNASGPFSSIYFSAAESTSSGLLNLSFLGTYQMLTIWRFTNIGRAKCS*T*AAPLKQ 296
Query: 363 GKTNQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYR 184
GKT+QQLKNSF QNGSHS IGAKVSSNKVINEY+TQ*VSHC*SST FVSIALTEAYR
Sbjct: 295 GKTSQQLKNSFP*GQNGSHSSIGAKVSSNKVINEYSTQ*VSHC*SST*DFVSIALTEAYR 116
Query: 183 G*ASDMSGPARTSKFLASTLRKDPDPILLSAPP 85
G*AS+ SGPARTSKFLASTLRKDPDPI L PP
Sbjct: 115 G*ASETSGPARTSKFLASTLRKDPDPISLPHPP 17
Score = 252 bits (544), Expect(2) = 5e-068
Identities = 106/155 (68%), Positives = 123/155 (79%)
Frame = -3 / -2
Query: 547 ADELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIE 368
AD LLKCFWS+ FNI LC *+ IIRFT L++ W++P V YLA+HKHWP KM+VNI STIE
Sbjct: 479 AD*LLKCFWSI*FNIFLCG*EYIIRFTQLILPWDVPDVDYLAIHKHWPRKMLVNISSTIE 300
Query: 367 PRQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI 188
R+D PAV+EQ I P+WKP SKS LKQSDK VQHPVS+PLLIIY FC CS+R I
Sbjct: 299 ARKD*PAVEEQFSIGPEWKPFKYRSKSELKQSDKRVQHPVSKPLLIIYLRFCFNCSHRGI 120
Query: 187 *RISK*YEWPGKDIEVLGQHLEERSGPHLALCSSS 83
*RISK +WPG+D+EVLGQHLEERSGPHL+ SS
Sbjct: 119 *RISKRNQWPGEDVEVLGQHLEERSGPHLSPAPSS 15
Score = 226 bits (489), Expect(2) = 2e-062
Identities = 103/158 (65%), Positives = 119/158 (75%)
Frame = +1 / +2
Query: 85 RRSREQDGVRIFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVL 264
RR RE+DGVRIFPQGAGQELR P RAT CLSSIC C SN +K S R*SA+A+LLG VL
Sbjct: 17 RRVRERDGVRIFPQGAGQELRRPRRATGFACLSSICLCESN*NKISSR*SAMAYLLGAVL 196
Query: 265 IYHFV*ANFCSNYRVASILVICKXXXXXXXXXXXXQWCCLCLRPFCAANVCEPPNSEHMV 444
+YHFV*A+FCS+ +ASIL + K QWCCLCLR FCAANVCE PNS+H+V
Sbjct: 197 VYHFV*AHFCSDT*MASILALWKTVLQLLASLSLLQWCCLCLRAFCAANVCESPNSQHLV 376
Query: 445 YSKK*EAR*I**CSVSCREIY*TKRTRSI*EAHQQVYE 558
K+ * **C++S REIY*TK TRSI*EA+QQVY+
Sbjct: 377 RPKEG*VE*T**CTLSRREIY*TKWTRSI*EANQQVYK 490
Score = 210 bits (454), Expect(2) = 5e-055
Identities = 103/156 (66%), Positives = 112/156 (71%)
Frame = -2 / -1
Query: 539 ASQMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKA 360
ASQMLLV VQYISL+L HHQ+Y L T C LFG SQTLAAQN RKH+QHH*+K
Sbjct: 471 ASQMLLVHLVQYISLRLRVHHQVYSTYPSLGRTRC*LFGDSQTLAAQNARKHKQHH*SKE 292
Query: 359 RPTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIED 180
R SS*RT H +MEA + EQK AQTK** ST PSK*A ADHL + L LL Q+HIED
Sbjct: 291 RLASS*RTVFHRARMEAIQVSEQK*AQTK**TSTAPSK*AIADHLLEILFQLLSQRHIED 112
Query: 179 KQVI*VARQGHRSSWPAP*GKIRTPSCSLLLLQ*NR 72
KQ VAR+G RSSWPAP*GKIRTPS S LL R
Sbjct: 111 KQAKPVARRGRRSSWPAP*GKIRTPSLSRTLLSSTR 4
Score = 87.2 bits (184), Expect(2) = 8e-031
Identities = 45/68 (66%), Positives = 50/68 (73%)
Frame = +3 / +1
Query: 327 MQSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDI 506
M++CS TAG S L SMVL MFT+IL GQCL* AK* T G Q S*VNLMM+ Q QR+I
Sbjct: 259 MENCSSTAG*SFLASMVLLMFTSILRGQCL*IAK*STSGTSQGRIS*VNLMMYSQPQRNI 438
Query: 507 LNKTDQKH 530
LN DQKH
Sbjct: 439 LN*MDQKH 462
Score = 67.0 bits (140), Expect(2) = 8e-031
Identities = 29/53 (54%), Positives = 33/53 (62%)
Frame = +3 / +1
Query: 84 EEEQRARWGPDLSSRCWPRTSMSLPGHSYHXXXXXXXXXEQ*RQKIL*MISSG 242
EE RWGPDLSSRCWPRTS S PGH + EQ +Q + *MIS+G
Sbjct: 16 EEGAGERWGPDLSSRCWPRTSTSSPGHWFRLLILYMPL*EQLKQNLK*MISNG 174
Score = 60.6 bits (126), Expect(2) = e-101
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2 / +3
Query: 593 LEDGEAENRAKAERESWGENPFYDKNYRY*TS 688
L+ EAE KAER+SWGENPFYDKNYR+* S
Sbjct: 531 LQGAEAEKMGKAERDSWGENPFYDKNYRH*IS 626
Score = 46.4 bits (95), Expect(2) = 2e-080
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = -1 / -3
Query: 687 LV*YL*FLS*KGFSPHDSLSALARFSASPSSKFNR 583
L+* *FLS* GFSPH+SLSAL FSAS K +R
Sbjct: 625 LI*CR*FLS*NGFSPHESLSALPIFSASAPCKIDR 521
Score = 33.1 bits (66), Expect(2) = 2e-062
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3 / +1
Query: 573 GTQSG*TWRMERLKIELKPRENRGAKIPSTTKTTDTK 683
G + G + R +LK + RE G KI S KTTDTK
Sbjct: 511 GARGGRSCRGRKLKRWARLREIHGVKIHSMIKTTDTK 621
Score = 26.7 bits (52), Expect(2) = 5e-068
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3 / -2
Query: 682 LVSVVFVVEGIFAP 641
LVSVVF++E IF P
Sbjct: 620 LVSVVFIIEWIFTP 579
Score = 24.4 bits (47), Expect(2) = 5e-055
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2 / -1
Query: 683 FSICSFCRRRDFRPTILSRL*LDFQ 609
FS+ SF R DF P LS+ FQ
Sbjct: 621 FSVGSFYHRMDFHPMNLSQPCPSFQ 547
>gb|BU987338.1|BU987338 HF14H19r HF Hordeum vulgare subsp. vulgare cDNA clone HF14H19
5-PRIME, mRNA sequence
Length = 602
Score = 326 bits (706), Expect(2) = e-100
Identities = 128/147 (87%), Positives = 136/147 (92%)
Frame = +2 / +1
Query: 95 ESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFIT 274
E +MGSGSFLKVLAKNFDVLAGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYSFIT
Sbjct: 7 EGEMGSGSFLKVLAKNFDVLAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFIT 186
Query: 275 LFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVNIWYIPR 454
LFELTFAPI+EWLPFW Y KLFFNCWLV P FNGAAYVY+HF RPMFVNRQIVNIWY+PR
Sbjct: 187 LFELTFAPILEWLPFWPYGKLFFNCWLVFPCFNGAAYVYEHFARPMFVNRQIVNIWYVPR 366
Query: 455 NEKLGKSDDVLSAAERYIEQNGPEAFE 535
+KL K DDVLSAAE+YIE NGPEAFE
Sbjct: 367 KDKLSKPDDVLSAAEKYIELNGPEAFE 447
Score = 268 bits (579), Expect(2) = 3e-078
Identities = 122/147 (82%), Positives = 128/147 (87%)
Frame = -1 / -1
Query: 543 MSFSNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQ 364
+SFSNASGPF SIY SAA+ TSS L + SFLG Y M TIWRFTNIGR K S*T*AAPL Q
Sbjct: 455 ISFSNASGPFSSIYFSAAESTSSGLLNLSFLGTYQMLTIWRFTNIGRAKCS*T*AAPLKQ 276
Query: 363 GKTNQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYR 184
GKT+QQLKNSF QNGSHS IGAKVSSNKVINEY+TQ*VSHC*SST FVSIALTEAYR
Sbjct: 275 GKTSQQLKNSFP*GQNGSHSSIGAKVSSNKVINEYSTQ*VSHC*SST*DFVSIALTEAYR 96
Query: 183 G*ASDMSGPARTSKFLASTLRKDPDPI 103
G*AS+ SGPARTSKFLASTLRKDPDPI
Sbjct: 95 G*ASETSGPARTSKFLASTLRKDPDPI 15
Score = 250 bits (540), Expect(2) = 2e-067
Identities = 104/151 (68%), Positives = 122/151 (80%)
Frame = -3 / -3
Query: 547 ADELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIE 368
AD LLKCFWS+ FNI LC *+ IIRFT L++ W++P V YLA+HKHWP +M+VNI STIE
Sbjct: 459 AD*LLKCFWSI*FNIFLCG*EYIIRFTQLILPWDVPDVDYLAIHKHWPREMLVNISSTIE 280
Query: 367 PRQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI 188
R+D PAV+EQ I P+WKP SKS LKQSDK VQHPVS+PLLIIY FC CS+R I
Sbjct: 279 ARKD*PAVEEQFSIGPEWKPFKYRSKSELKQSDKRVQHPVSKPLLIIYLRFCFNCSHRGI 100
Query: 187 *RISK*YEWPGKDIEVLGQHLEERSGPHLAL 95
*RISK +WPG+D+EVLGQHLEERSGPHL+L
Sbjct: 99 *RISKRNQWPGEDVEVLGQHLEERSGPHLSL 7
Score = 215 bits (463), Expect(2) = 7e-059
Identities = 99/156 (63%), Positives = 116/156 (74%)
Frame = +1 / +3
Query: 91 SREQDGVRIFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVLIY 270
+R +DGVRIFPQGAGQELR P RAT CLSSIC C SN +K S R*SA+A+LLG VL+Y
Sbjct: 3 ARGRDGVRIFPQGAGQELRRPRRATGFACLSSICLCESN*NKISSR*SAMAYLLGAVLVY 182
Query: 271 HFV*ANFCSNYRVASILVICKXXXXXXXXXXXXQWCCLCLRPFCAANVCEPPNSEHMVYS 450
HFV*A+FCS+ +ASIL + K QWCCLCLR F AANVCE PNS+H+V
Sbjct: 183 HFV*AHFCSDT*MASILALWKTVLQLLASLSLLQWCCLCLRAFRAANVCESPNSQHLVRP 362
Query: 451 KK*EAR*I**CSVSCREIY*TKRTRSI*EAHQQVYE 558
K+ * **C++S REIY*TK TRSI*EA+QQVY+
Sbjct: 363 KEG*VE*T**CTLSRREIY*TKWTRSI*EANQQVYK 470
Score = 204 bits (441), Expect(2) = 3e-053
Identities = 98/146 (67%), Positives = 108/146 (73%)
Frame = -2 / -2
Query: 539 ASQMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKA 360
ASQMLLV VQYISL+L HHQ+Y L T C LFG SQTLAA+N RKH+QHH*+K
Sbjct: 451 ASQMLLVHLVQYISLRLRVHHQVYSTYPSLGRTRC*LFGDSQTLAARNARKHKQHH*SKE 272
Query: 359 RPTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIED 180
R SS*RT H +MEA + EQK AQTK** ST PSK*A ADHL + L LL Q+HIED
Sbjct: 271 RLASS*RTVFHRARMEAIQVSEQK*AQTK**TSTAPSK*AIADHLLEILFQLLSQRHIED 92
Query: 179 KQVI*VARQGHRSSWPAP*GKIRTPS 102
KQ VAR+G RSSWPAP*GKIRTPS
Sbjct: 91 KQAKPVARRGRRSSWPAP*GKIRTPS 14
Score = 84.5 bits (178), Expect(2) = 5e-030
Identities = 44/68 (64%), Positives = 49/68 (72%)
Frame = +3 / +2
Query: 327 MQSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDI 506
M++CS TAG S L SMVL MFT+I GQCL* AK* T G Q S*VNLMM+ Q QR+I
Sbjct: 239 MENCSSTAG*SFLASMVLLMFTSISRGQCL*IAK*STSGTSQGRIS*VNLMMYSQPQRNI 418
Query: 507 LNKTDQKH 530
LN DQKH
Sbjct: 419 LN*MDQKH 442
Score = 67.0 bits (140), Expect(2) = 5e-030
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +3 / +2
Query: 96 RARWGPDLSSRCWPRTSMSLPGHSYHXXXXXXXXXEQ*RQKIL*MISSG 242
R RWGPDLSSRCWPRTS S PGH + EQ +Q + *MIS+G
Sbjct: 8 RERWGPDLSSRCWPRTSTSSPGHWFRLLILYMPL*EQLKQNLK*MISNG 154
Score = 59.3 bits (123), Expect(2) = e-100
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2 / +1
Query: 593 LEDGEAENRAKAERESWGENPFYDKNYRY* 682
L+ EAE KAER+SWGENPFYDKNYR+*
Sbjct: 511 LQGAEAEKMGKAERDSWGENPFYDKNYRH* 600
Score = 44.6 bits (91), Expect(2) = 3e-078
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -1 / -1
Query: 672 *FLS*KGFSPHDSLSALARFSASPSSKFNR 583
*FLS* GFSPH+SLSAL FSAS K +R
Sbjct: 590 *FLS*NGFSPHESLSALPIFSASAPCKIDR 501
Score = 33.1 bits (66), Expect(2) = 7e-059
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3 / +2
Query: 573 GTQSG*TWRMERLKIELKPRENRGAKIPSTTKTTDTK 683
G + G + R +LK + RE G KI S KTTDTK
Sbjct: 491 GARGGRSCRGRKLKRWARLREIHGVKIHSMIKTTDTK 601
Score = 26.7 bits (52), Expect(2) = 2e-067
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3 / -3
Query: 682 LVSVVFVVEGIFAP 641
LVSVVF++E IF P
Sbjct: 600 LVSVVFIIEWIFTP 559
Score = 24.4 bits (47), Expect(2) = 3e-053
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2 / -2
Query: 683 FSICSFCRRRDFRPTILSRL*LDFQ 609
FS+ SF R DF P LS+ FQ
Sbjct: 601 FSVGSFYHRMDFHPMNLSQPCPSFQ 527
>gb|BQ463836.1|BQ463836 HG01J11r HG Hordeum vulgare subsp. vulgare cDNA clone HG01J11
5-PRIME, mRNA sequence
Length = 574
Score = 316 bits (685), Expect(2) = 5e-097
Identities = 124/141 (87%), Positives = 131/141 (92%)
Frame = +2 / +1
Query: 113 GSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTF 292
GSFLKVLAKNFDVLAGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYSFITLFELTF
Sbjct: 1 GSFLKVLAKNFDVLAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTF 180
Query: 293 APIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVNIWYIPRNEKLGK 472
API+EWLPFW Y KLFFNCWLV P FNGAAYVY+HF RPMFVNRQIVNIWY+PR +KL K
Sbjct: 181 APILEWLPFWPYGKLFFNCWLVFPCFNGAAYVYEHFARPMFVNRQIVNIWYVPRKDKLSK 360
Query: 473 SDDVLSAAERYIEQNGPEAFE 535
DDVLSAAE+YIE NGPEAFE
Sbjct: 361 PDDVLSAAEKYIELNGPEAFE 423
Score = 257 bits (555), Expect(2) = 7e-075
Identities = 118/143 (82%), Positives = 124/143 (86%)
Frame = -1 / -3
Query: 543 MSFSNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQ 364
+SFSNASGPF SIY SAA+ TSS L + SFLG Y M TIWRFTNIGR K S*T*AAPL Q
Sbjct: 431 ISFSNASGPFSSIYFSAAESTSSGLLNLSFLGTYQMLTIWRFTNIGRAKCS*T*AAPLKQ 252
Query: 363 GKTNQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYR 184
GKT+QQLKNSF QNGSHS IGAKVSSNKVINEY+TQ*VSHC*SST FVSIALTEAYR
Sbjct: 251 GKTSQQLKNSFP*GQNGSHSSIGAKVSSNKVINEYSTQ*VSHC*SST*DFVSIALTEAYR 72
Query: 183 G*ASDMSGPARTSKFLASTLRKD 115
G*AS+ SGPARTSKFLASTLRKD
Sbjct: 71 G*ASETSGPARTSKFLASTLRKD 3
Score = 236 bits (510), Expect(2) = 8e-063
Identities = 99/145 (68%), Positives = 116/145 (80%)
Frame = -3 / -2
Query: 547 ADELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIE 368
AD LLKCFWS+ FNI LC *+ IIRFT L++ W++P V YLA+HKHWP +M+VNI STIE
Sbjct: 435 AD*LLKCFWSI*FNIFLCG*EYIIRFTQLILPWDVPDVDYLAIHKHWPREMLVNISSTIE 256
Query: 367 PRQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI 188
R+D PAV+EQ I P+WKP SKS LKQSDK VQHPVS+PLLIIY FC CS+R I
Sbjct: 255 ARKD*PAVEEQFSIGPEWKPFKYRSKSELKQSDKRVQHPVSKPLLIIYLRFCFNCSHRGI 76
Query: 187 *RISK*YEWPGKDIEVLGQHLEERS 113
*RISK +WPG+D+EVLGQHLEERS
Sbjct: 75 *RISKRNQWPGEDVEVLGQHLEERS 1
Score = 203 bits (437), Expect = 2e-051
Identities = 94/148 (63%), Positives = 109/148 (73%)
Frame = +1 / +3
Query: 115 IFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVLIYHFV*ANFC 294
IFPQGAGQELR P RAT CLSSIC C SN +K S R*SA+A+LLG VL+YHFV*A+FC
Sbjct: 3 IFPQGAGQELRRPRRATGFACLSSICLCESN*NKISSR*SAMAYLLGAVLVYHFV*AHFC 182
Query: 295 SNYRVASILVICKXXXXXXXXXXXXQWCCLCLRPFCAANVCEPPNSEHMVYSKK*EAR*I 474
S+ +ASIL + K QWCCLCLR F AANVCE PNS+H+V K+ *
Sbjct: 183 SDT*MASILALWKTVLQLLASLSLLQWCCLCLRAFRAANVCESPNSQHLVRPKEG*VE*T 362
Query: 475 **CSVSCREIY*TKRTRSI*EAHQQVYE 558
**C++S REIY*TK TRSI*EA+QQVY+
Sbjct: 363 **CTLSRREIY*TKWTRSI*EANQQVYK 446
Score = 195 bits (420), Expect = 4e-049
Identities = 94/142 (66%), Positives = 104/142 (73%)
Frame = -2 / -1
Query: 539 ASQMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKA 360
ASQMLLV VQYISL+L HHQ+Y L T C LFG SQTLAA+N RKH+QHH*+K
Sbjct: 427 ASQMLLVHLVQYISLRLRVHHQVYSTYPSLGRTRC*LFGDSQTLAARNARKHKQHH*SKE 248
Query: 359 RPTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIED 180
R SS*RT H +MEA + EQK AQTK** ST PSK*A ADHL + L LL Q+HIED
Sbjct: 247 RLASS*RTVFHRARMEAIQVSEQK*AQTK**TSTAPSK*AIADHLLEILFQLLSQRHIED 68
Query: 179 KQVI*VARQGHRSSWPAP*GKI 114
KQ VAR+G RSSWPAP*GKI
Sbjct: 67 KQAKPVARRGRRSSWPAP*GKI 2
Score = 84.5 bits (178), Expect(2) = 2e-025
Identities = 44/68 (64%), Positives = 49/68 (72%)
Frame = +3 / +2
Query: 327 MQSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDI 506
M++CS TAG S L SMVL MFT+I GQCL* AK* T G Q S*VNLMM+ Q QR+I
Sbjct: 215 MENCSSTAG*SFLASMVLLMFTSISRGQCL*IAK*STSGTSQGRIS*VNLMMYSQPQRNI 394
Query: 507 LNKTDQKH 530
LN DQKH
Sbjct: 395 LN*MDQKH 418
Score = 58.8 bits (122), Expect(2) = 5e-097
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +2 / +1
Query: 593 LEDGEAENRAKAERESWGENPFYDKNYRY 679
L+ EAE KAER+SWGENPFYDKNYR+
Sbjct: 487 LQGAEAEKMGKAERDSWGENPFYDKNYRH 573
Score = 51.9 bits (107), Expect(2) = 2e-025
Identities = 23/43 (53%), Positives = 27/43 (62%)
Frame = +3 / +2
Query: 114 DLSSRCWPRTSMSLPGHSYHXXXXXXXXXEQ*RQKIL*MISSG 242
DLSSRCWPRTS S PGH + EQ +Q + *MIS+G
Sbjct: 2 DLSSRCWPRTSTSSPGHWFRLLILYMPL*EQLKQNLK*MISNG 130
Score = 44.6 bits (91), Expect(2) = 7e-075
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -1 / -3
Query: 672 *FLS*KGFSPHDSLSALARFSASPSSKFNR 583
*FLS* GFSPH+SLSAL FSAS K +R
Sbjct: 566 *FLS*NGFSPHESLSALPIFSASAPCKIDR 477
Score = 24.9 bits (48), Expect(2) = 8e-063
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3 / -2
Query: 679 VSVVFVVEGIFAP 641
VSVVF++E IF P
Sbjct: 573 VSVVFIIEWIFTP 535
>gb|CA030550.1|CA030550 HX07G08r HX Hordeum vulgare subsp. vulgare cDNA clone HX07G08
5-PRIME, mRNA sequence
Length = 546
Score = 308 bits (668), Expect(2) = 1e-085
Identities = 121/139 (87%), Positives = 128/139 (92%)
Frame = +2 / +1
Query: 119 FLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAP 298
F KVLAKNFDVLAGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYSFITLFELTFAP
Sbjct: 31 FPKVLAKNFDVLAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTFAP 210
Query: 299 IIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVNIWYIPRNEKLGKSD 478
I+EWLPFW Y KLFFNCWLV P FNGAAYVY+HF RPMFVNRQIVNIWY+PR +KL K D
Sbjct: 211 ILEWLPFWPYGKLFFNCWLVFPCFNGAAYVYEHFARPMFVNRQIVNIWYVPRKDKLSKPD 390
Query: 479 DVLSAAERYIEQNGPEAFE 535
DVLSAAE+YIE NGPEAFE
Sbjct: 391 DVLSAAEKYIELNGPEAFE 447
Score = 252 bits (545), Expect = 2e-066
Identities = 118/148 (79%), Positives = 124/148 (83%)
Frame = -1 / -2
Query: 543 MSFSNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQ 364
+SFSNASGPF SIY SAA+ TSS L + SFLG Y M TIWRFTNIGR K S*T*AAPL Q
Sbjct: 455 ISFSNASGPFSSIYFSAAESTSSGLLNLSFLGTYQMLTIWRFTNIGRAKCS*T*AAPLKQ 276
Query: 363 GKTNQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYR 184
GKT+QQLKNSF QNGSHS IGAKVSSNKVINEY+TQ*VSHC*SST FVSIALTEAYR
Sbjct: 275 GKTSQQLKNSFP*GQNGSHSSIGAKVSSNKVINEYSTQ*VSHC*SST*DFVSIALTEAYR 96
Query: 183 G*ASDMSGPARTSKFLASTLRKDPDPIL 100
G*AS+ SGPARTSKFLASTL K P L
Sbjct: 95 G*ASETSGPARTSKFLASTLGKIRTPSL 12
Score = 229 bits (495), Expect(2) = 3e-060
Identities = 96/147 (65%), Positives = 114/147 (77%)
Frame = -3 / -1
Query: 547 ADELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIE 368
AD LLKCFWS+ FNI LC *+ IIRFT L++ W++P V YLA+HKHWP +M+VNI STIE
Sbjct: 459 AD*LLKCFWSI*FNIFLCG*EYIIRFTQLILPWDVPDVDYLAIHKHWPREMLVNISSTIE 280
Query: 367 PRQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI 188
R+D PAV+EQ I P+WKP SKS LKQSDK VQHPVS+PLLIIY FC CS+R I
Sbjct: 279 ARKD*PAVEEQFSIGPEWKPFKYRSKSELKQSDKRVQHPVSKPLLIIYLRFCFNCSHRGI 100
Query: 187 *RISK*YEWPGKDIEVLGQHLEERSGP 107
*RISK +WPG+D+EVLGQHL + P
Sbjct: 99 *RISKRNQWPGEDVEVLGQHLRKDPDP 19
Score = 193 bits (415), Expect(2) = 3e-049
Identities = 90/144 (62%), Positives = 105/144 (72%)
Frame = +1 / +3
Query: 127 GAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVLIYHFV*ANFCSNYR 306
GAGQELR P RAT CLSSIC C SN +K S R*SA+A+LLG VL+YHFV*A+FCS+
Sbjct: 39 GAGQELRRPRRATGFACLSSICLCESN*NKISSR*SAMAYLLGAVLVYHFV*AHFCSDT* 218
Query: 307 VASILVICKXXXXXXXXXXXXQWCCLCLRPFCAANVCEPPNSEHMVYSKK*EAR*I**CS 486
+ASIL + K QWCCLCLR F AANVCE PNS+H+V K+ * **C+
Sbjct: 219 MASILALWKTVLQLLASLSLLQWCCLCLRAFRAANVCESPNSQHLVRPKEG*VE*T**CT 398
Query: 487 VSCREIY*TKRTRSI*EAHQQVYE 558
+S REIY*TK TRSI*EA+QQVY+
Sbjct: 399 LSRREIY*TKWTRSI*EANQQVYK 470
Score = 188 bits (405), Expect = 5e-047
Identities = 91/139 (65%), Positives = 101/139 (72%)
Frame = -2 / -3
Query: 539 ASQMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKA 360
ASQMLLV VQYISL+L HHQ+Y L T C LFG SQTLAA+N RKH+QHH*+K
Sbjct: 451 ASQMLLVHLVQYISLRLRVHHQVYSTYPSLGRTRC*LFGDSQTLAARNARKHKQHH*SKE 272
Query: 359 RPTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIED 180
R SS*RT H +MEA + EQK AQTK** ST PSK*A ADHL + L LL Q+HIED
Sbjct: 271 RLASS*RTVFHRARMEAIQVSEQK*AQTK**TSTAPSK*AIADHLLEILFQLLSQRHIED 92
Query: 179 KQVI*VARQGHRSSWPAP* 123
KQ VAR+G RSSWPAP*
Sbjct: 91 KQAKPVARRGRRSSWPAP* 35
Score = 84.5 bits (178), Expect(2) = 5e-023
Identities = 44/68 (64%), Positives = 49/68 (72%)
Frame = +3 / +2
Query: 327 MQSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDI 506
M++CS TAG S L SMVL MFT+I GQCL* AK* T G Q S*VNLMM+ Q QR+I
Sbjct: 239 MENCSSTAG*SFLASMVLLMFTSISRGQCL*IAK*STSGTSQGRIS*VNLMMYSQPQRNI 418
Query: 507 LNKTDQKH 530
LN DQKH
Sbjct: 419 LN*MDQKH 442
Score = 43.7 bits (89), Expect(2) = 5e-023
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +3 / +2
Query: 126 RCWPRTSMSLPGHSYHXXXXXXXXXEQ*RQKIL*MISSG 242
RCWPRTS S PGH + EQ +Q + *MIS+G
Sbjct: 38 RCWPRTSTSSPGHWFRLLILYMPL*EQLKQNLK*MISNG 154
Score = 28.6 bits (56), Expect(2) = 1e-085
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +1 / +1
Query: 88 RSREQDGVRIFPQ 126
R+RE+DGVRIFP+
Sbjct: 1 RTRERDGVRIFPK 39
Score = 23.1 bits (44), Expect(2) = 3e-060
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -2
Query: 122 GKIRTPSCSLL 90
GKIRTPS SL+
Sbjct: 35 GKIRTPSLSLV 3
Score = 23.1 bits (44), Expect(2) = 3e-049
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3 / +3
Query: 90 EQRARWGPDLS 122
++ RWGPDLS
Sbjct: 3 DEGERWGPDLS 35
>gb|AL503276.1|AL503276 AL503276 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H03T 5', mRNA sequence
Length = 700
Score = 310 bits (672), Expect = 7e-084
Identities = 119/155 (76%), Positives = 137/155 (88%)
Frame = +2 / +3
Query: 71 FCSTGGGAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTY 250
F ++G +MGSGSFLKVL N DVLAGP++SLAYPLYASVRAIETK+P+DDQQWLTY
Sbjct: 81 FAASGERIAGQMGSGSFLKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQWLTY 260
Query: 251 WVLYSFITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQI 430
WVLYSFITLFELTFA +IEWLPFWSY KLFFNCWLVLP+FNGAA+VY+HFVRPM VN+Q+
Sbjct: 261 WVLYSFITLFELTFAAVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQV 440
Query: 431 VNIWYIPRNEKLGKSDDVLSAAERYIEQNGPEAFE 535
VNIWYIP+ E K DDV+SAA++YIEQNG +AFE
Sbjct: 441 VNIWYIPKKENSDKPDDVISAAQKYIEQNGSKAFE 545
Score = 237 bits (511), Expect = 1e-061
Identities = 111/157 (70%), Positives = 118/157 (75%)
Frame = -1 / -1
Query: 534 SNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQGKT 355
SNA PFCS+Y AA+ TSS L FSF GIY MFT FT IGRTK S*T AAPL GKT
Sbjct: 544 SNALDPFCSMYFCAAEITSSGLSEFSFFGIYQMFTTCWFTIIGRTKCS*TCAAPLK*GKT 365
Query: 354 NQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYRG*A 175
NQQLKNSF DQ GSHSI AKVSSN+VINEYNTQ*VSHC*SS G FVSIA T+AYRG*A
Sbjct: 364 NQQLKNSFP*DQKGSHSITAAKVSSNRVINEYNTQ*VSHC*SSIGDFVSIARTDAYRG*A 185
Query: 174 SDMSGPARTSKFLASTLRKDPDPILLSAPPPVEQNYR 64
S+ GPARTS+ L STLRKDPDPI + P N R
Sbjct: 184 SETMGPARTSRLLTSTLRKDPDPICPAIRSPEAANLR 74
Score = 212 bits (458), Expect = 2e-054
Identities = 88/148 (59%), Positives = 112/148 (75%)
Frame = -3 / -3
Query: 544 DELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIEP 365
+E LKCF S+LFN+ LCS* I+ F *+ + WNIP V+ L VH HWPHKM++N+ T++
Sbjct: 554 NESLKCFRSILFNVFLCS*NYIVGFI*IFLFWNIPDVYNLLVHNHWPHKMLINMRCTVKV 375
Query: 364 RQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI* 185
QDQPA+++Q + PK +P + SK L+QSDK VQHPVSEPLLIIYR FC YCSNR I
Sbjct: 374 GQDQPAIEKQFSVRPKREPFNYCSKGELEQSDKRVQHPVSEPLLIIYRRFCFYCSNRRIQ 195
Query: 184 RISK*YEWPGKDIEVLGQHLEERSGPHL 101
RIS+* PG++I+V +HLEERSGPHL
Sbjct: 194 RISE*NYGPGENIQVADEHLEERSGPHL 111
Score = 162 bits (349), Expect = 2e-039
Identities = 82/144 (56%), Positives = 99/144 (68%)
Frame = -2 / -2
Query: 536 SQMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKAR 357
SQML + FVQ IS+QL H ++YL FLEYT C GSQ+LAAQN KH H *++AR
Sbjct: 546 SQML*IHFVQCISVQLKLHRRVYLNFPFLEYTRCLQLAGSQSLAAQNAHKHALHR*SRAR 367
Query: 356 PTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIEDK 177
PTS+*+T TK A + L+Q+ A+T+** STTPSK*A ADHL + L LLL Q H EDK
Sbjct: 366 PTSN*KTVFRKTKKGAIQLLQQR*ARTE**TSTTPSK*AIADHL*EILFLLLEQTHTEDK 187
Query: 176 QVI*VARQGHRSSWPAP*GKIRTP 105
+V AR+ H AP*GKIRTP
Sbjct: 186 RVKLWARREHPGC*RAP*GKIRTP 115
Score = 95.9 bits (203), Expect(2) = 9e-035
Identities = 47/90 (52%), Positives = 59/90 (65%)
Frame = +1 / +2
Query: 64 PIVLFYWRRSREQDGVRIFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVA 243
P + + R +GVRIFPQGA Q+ C RA T LSS+C C SNR+K S R*SA+A
Sbjct: 74 PQIRSFGRADCWANGVRIFPQGARQQPGCSRRAHSFTRLSSVCVCSSNRNKISYR*SAMA 253
Query: 244 HLLGVVLIYHFV*ANFCSNYRVASILVICK 333
HLLGVVL+YH V A+ C + +A LV+ K
Sbjct: 254 HLLGVVLVYHSVRAHLCCSN*MAPFLVLRK 343
Score = 71.6 bits (150), Expect(2) = 9e-035
Identities = 35/67 (52%), Positives = 43/67 (64%)
Frame = +3 / +1
Query: 330 QSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDIL 509
++C AGWSC V MF +ILCGQ L*T+K *T GIFQ+ + +N M QL R+ L
Sbjct: 340 ENCFSIAGWSCPTLTVQRMFMSILCGQ*L*TSKL*TSGIFQKRKIQINPTM*FQLHRNTL 519
Query: 510 NKTDQKH 530
NK D KH
Sbjct: 520 NKMDLKH 540
>gb|BU987425.1|BU987425 HF14L15r HF Hordeum vulgare subsp. vulgare cDNA clone HF14L15
5-PRIME, mRNA sequence
Length = 639
Score = 310 bits (672), Expect = 7e-084
Identities = 119/155 (76%), Positives = 137/155 (88%)
Frame = +2 / +2
Query: 71 FCSTGGGAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTY 250
F ++G +MGSGSFLKVL N DVLAGP++SLAYPLYASVRAIETK+P+DDQQWLTY
Sbjct: 77 FAASGERIAGQMGSGSFLKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQWLTY 256
Query: 251 WVLYSFITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQI 430
WVLYSFITLFELTFA +IEWLPFWSY KLFFNCWLVLP+FNGAA+VY+HFVRPM VN+Q+
Sbjct: 257 WVLYSFITLFELTFAAVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQV 436
Query: 431 VNIWYIPRNEKLGKSDDVLSAAERYIEQNGPEAFE 535
VNIWYIP+ E K DDV+SAA++YIEQNG +AFE
Sbjct: 437 VNIWYIPKKENSDKPDDVISAAQKYIEQNGSKAFE 541
Score = 237 bits (511), Expect = 1e-061
Identities = 111/157 (70%), Positives = 118/157 (75%)
Frame = -1 / -1
Query: 534 SNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQGKT 355
SNA PFCS+Y AA+ TSS L FSF GIY MFT FT IGRTK S*T AAPL GKT
Sbjct: 540 SNALDPFCSMYFCAAEITSSGLSEFSFFGIYQMFTTCWFTIIGRTKCS*TCAAPLK*GKT 361
Query: 354 NQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYRG*A 175
NQQLKNSF DQ GSHSI AKVSSN+VINEYNTQ*VSHC*SS G FVSIA T+AYRG*A
Sbjct: 360 NQQLKNSFP*DQKGSHSITAAKVSSNRVINEYNTQ*VSHC*SSIGDFVSIARTDAYRG*A 181
Query: 174 SDMSGPARTSKFLASTLRKDPDPILLSAPPPVEQNYR 64
S+ GPARTS+ L STLRKDPDPI + P N R
Sbjct: 180 SETMGPARTSRLLTSTLRKDPDPICPAIRSPEAANLR 70
Score = 212 bits (458), Expect = 2e-054
Identities = 88/148 (59%), Positives = 112/148 (75%)
Frame = -3 / -3
Query: 544 DELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIEP 365
+E LKCF S+LFN+ LCS* I+ F *+ + WNIP V+ L VH HWPHKM++N+ T++
Sbjct: 550 NESLKCFRSILFNVFLCS*NYIVGFI*IFLFWNIPDVYNLLVHNHWPHKMLINMRCTVKV 371
Query: 364 RQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI* 185
QDQPA+++Q + PK +P + SK L+QSDK VQHPVSEPLLIIYR FC YCSNR I
Sbjct: 370 GQDQPAIEKQFSVRPKREPFNYCSKGELEQSDKRVQHPVSEPLLIIYRRFCFYCSNRRIQ 191
Query: 184 RISK*YEWPGKDIEVLGQHLEERSGPHL 101
RIS+* PG++I+V +HLEERSGPHL
Sbjct: 190 RISE*NYGPGENIQVADEHLEERSGPHL 107
Score = 162 bits (349), Expect = 2e-039
Identities = 82/144 (56%), Positives = 99/144 (68%)
Frame = -2 / -2
Query: 536 SQMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKAR 357
SQML + FVQ IS+QL H ++YL FLEYT C GSQ+LAAQN KH H *++AR
Sbjct: 542 SQML*IHFVQCISVQLKLHRRVYLNFPFLEYTRCLQLAGSQSLAAQNAHKHALHR*SRAR 363
Query: 356 PTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIEDK 177
PTS+*+T TK A + L+Q+ A+T+** STTPSK*A ADHL + L LLL Q H EDK
Sbjct: 362 PTSN*KTVFRKTKKGAIQLLQQR*ARTE**TSTTPSK*AIADHL*EILFLLLEQTHTEDK 183
Query: 176 QVI*VARQGHRSSWPAP*GKIRTP 105
+V AR+ H AP*GKIRTP
Sbjct: 182 RVKLWARREHPGC*RAP*GKIRTP 111
Score = 95.9 bits (203), Expect(2) = 9e-035
Identities = 47/90 (52%), Positives = 59/90 (65%)
Frame = +1 / +1
Query: 64 PIVLFYWRRSREQDGVRIFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVA 243
P + + R +GVRIFPQGA Q+ C RA T LSS+C C SNR+K S R*SA+A
Sbjct: 70 PQIRSFGRADCWANGVRIFPQGARQQPGCSRRAHSFTRLSSVCVCSSNRNKISYR*SAMA 249
Query: 244 HLLGVVLIYHFV*ANFCSNYRVASILVICK 333
HLLGVVL+YH V A+ C + +A LV+ K
Sbjct: 250 HLLGVVLVYHSVRAHLCCSN*MAPFLVLRK 339
Score = 71.6 bits (150), Expect(2) = 9e-035
Identities = 35/67 (52%), Positives = 43/67 (64%)
Frame = +3 / +3
Query: 330 QSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDIL 509
++C AGWSC V MF +ILCGQ L*T+K *T GIFQ+ + +N M QL R+ L
Sbjct: 336 ENCFSIAGWSCPTLTVQRMFMSILCGQ*L*TSKL*TSGIFQKRKIQINPTM*FQLHRNTL 515
Query: 510 NKTDQKH 530
NK D KH
Sbjct: 516 NKMDLKH 536
>gb|CA019755.1|CA019755 HV13A06r HV Hordeum vulgare subsp. vulgare cDNA clone HV13A06
5-PRIME, mRNA sequence
Length = 558
Score = 310 bits (672), Expect = 7e-084
Identities = 119/155 (76%), Positives = 137/155 (88%)
Frame = +2 / +2
Query: 71 FCSTGGGAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTY 250
F ++G +MGSGSFLKVL N DVLAGP++SLAYPLYASVRAIETK+P+DDQQWLTY
Sbjct: 56 FAASGERIAGQMGSGSFLKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQWLTY 235
Query: 251 WVLYSFITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQI 430
WVLYSFITLFELTFA +IEWLPFWSY KLFFNCWLVLP+FNGAA+VY+HFVRPM VN+Q+
Sbjct: 236 WVLYSFITLFELTFAAVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQV 415
Query: 431 VNIWYIPRNEKLGKSDDVLSAAERYIEQNGPEAFE 535
VNIWYIP+ E K DDV+SAA++YIEQNG +AFE
Sbjct: 416 VNIWYIPKKENSDKPDDVISAAQKYIEQNGSKAFE 520
Score = 235 bits (507), Expect = 4e-061
Identities = 110/155 (70%), Positives = 117/155 (75%)
Frame = -1 / -1
Query: 534 SNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQGKT 355
SNA PFCS+Y AA+ TSS L FSF GIY MFT FT IGRTK S*T AAPL GKT
Sbjct: 519 SNALDPFCSMYFCAAEITSSGLSEFSFFGIYQMFTTCWFTIIGRTKCS*TCAAPLK*GKT 340
Query: 354 NQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYRG*A 175
NQQLKNSF DQ GSHSI AKVSSN+VINEYNTQ*VSHC*SS G FVSIA T+AYRG*A
Sbjct: 339 NQQLKNSFP*DQKGSHSITAAKVSSNRVINEYNTQ*VSHC*SSIGDFVSIARTDAYRG*A 160
Query: 174 SDMSGPARTSKFLASTLRKDPDPILLSAPPPVEQN 70
S+ GPARTS+ L STLRKDPDPI + P N
Sbjct: 159 SETMGPARTSRLLTSTLRKDPDPICPAIRSPEAAN 55
Score = 212 bits (458), Expect = 2e-054
Identities = 88/148 (59%), Positives = 112/148 (75%)
Frame = -3 / -3
Query: 544 DELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIEP 365
+E LKCF S+LFN+ LCS* I+ F *+ + WNIP V+ L VH HWPHKM++N+ T++
Sbjct: 529 NESLKCFRSILFNVFLCS*NYIVGFI*IFLFWNIPDVYNLLVHNHWPHKMLINMRCTVKV 350
Query: 364 RQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI* 185
QDQPA+++Q + PK +P + SK L+QSDK VQHPVSEPLLIIYR FC YCSNR I
Sbjct: 349 GQDQPAIEKQFSVRPKREPFNYCSKGELEQSDKRVQHPVSEPLLIIYRRFCFYCSNRRIQ 170
Query: 184 RISK*YEWPGKDIEVLGQHLEERSGPHL 101
RIS+* PG++I+V +HLEERSGPHL
Sbjct: 169 RISE*NYGPGENIQVADEHLEERSGPHL 86
Score = 162 bits (349), Expect = 2e-039
Identities = 82/144 (56%), Positives = 99/144 (68%)
Frame = -2 / -2
Query: 536 SQMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKAR 357
SQML + FVQ IS+QL H ++YL FLEYT C GSQ+LAAQN KH H *++AR
Sbjct: 521 SQML*IHFVQCISVQLKLHRRVYLNFPFLEYTRCLQLAGSQSLAAQNAHKHALHR*SRAR 342
Query: 356 PTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIEDK 177
PTS+*+T TK A + L+Q+ A+T+** STTPSK*A ADHL + L LLL Q H EDK
Sbjct: 341 PTSN*KTVFRKTKKGAIQLLQQR*ARTE**TSTTPSK*AIADHL*EILFLLLEQTHTEDK 162
Query: 176 QVI*VARQGHRSSWPAP*GKIRTP 105
+V AR+ H AP*GKIRTP
Sbjct: 161 RVKLWARREHPGC*RAP*GKIRTP 90
Score = 95.5 bits (202), Expect(2) = 1e-034
Identities = 45/77 (58%), Positives = 55/77 (71%)
Frame = +1 / +1
Query: 103 DGVRIFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVLIYHFV* 282
+GVRIFPQGA Q+ C RA T LSS+C C SNR+K S R*SA+AHLLGVVL+YH V
Sbjct: 88 NGVRIFPQGARQQPGCSRRAHSFTRLSSVCVCSSNRNKISYR*SAMAHLLGVVLVYHSVR 267
Query: 283 ANFCSNYRVASILVICK 333
A+ C + +A LV+ K
Sbjct: 268 AHLCCSN*MAPFLVLRK 318
Score = 71.6 bits (150), Expect(2) = 1e-034
Identities = 35/67 (52%), Positives = 43/67 (64%)
Frame = +3 / +3
Query: 330 QSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDIL 509
++C AGWSC V MF +ILCGQ L*T+K *T GIFQ+ + +N M QL R+ L
Sbjct: 315 ENCFSIAGWSCPTLTVQRMFMSILCGQ*L*TSKL*TSGIFQKRKIQINPTM*FQLHRNTL 494
Query: 510 NKTDQKH 530
NK D KH
Sbjct: 495 NKMDLKH 515
>gb|AV916398.1|AV916398 AV916398 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a21 5', mRNA sequence
Length = 637
Score = 292 bits (631), Expect = 3e-078
Identities = 111/141 (78%), Positives = 127/141 (90%)
Frame = +2 / +3
Query: 113 GSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTF 292
G F +VL N DVLAGP++SLAYPLYASVRAIETK+P+DDQQWLTYWVLYSFITLFELTF
Sbjct: 12 GIFPQVLVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQWLTYWVLYSFITLFELTF 191
Query: 293 APIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVNIWYIPRNEKLGK 472
A +IEWLPFWSY KLFFNCWLVLP+FNGAA+VY+HFVRPM VN+Q+VNIWYIP+ E K
Sbjct: 192 AAVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKENSDK 371
Query: 473 SDDVLSAAERYIEQNGPEAFE 535
DDV+SAA++YIEQNG +AFE
Sbjct: 372 PDDVISAAQKYIEQNGSKAFE 434
Score = 215 bits (464), Expect = 3e-055
Identities = 102/141 (72%), Positives = 108/141 (76%)
Frame = -1 / -1
Query: 534 SNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQGKT 355
SNA PFCS+Y AA+ TSS L FSF GIY MFT FT IGRTK S*T AAPL GKT
Sbjct: 433 SNALDPFCSMYFCAAEITSSGLSEFSFFGIYQMFTTCWFTIIGRTKCS*TCAAPLK*GKT 254
Query: 354 NQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYRG*A 175
NQQLKNSF DQ GSHSI AKVSSN+VINEYNTQ*VSHC*SS G FVSIA T+AYRG*A
Sbjct: 253 NQQLKNSFP*DQKGSHSITAAKVSSNRVINEYNTQ*VSHC*SSIGDFVSIARTDAYRG*A 74
Query: 174 SDMSGPARTSKFLASTLRKDP 112
S+ GPARTS+ L ST K P
Sbjct: 73 SETMGPARTSRLLTST*GKIP 11
Score = 193 bits (415), Expect = 2e-048
Identities = 80/142 (56%), Positives = 105/142 (73%)
Frame = -3 / -3
Query: 544 DELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIEP 365
+E LKCF S+LFN+ LCS* I+ F *+ + WNIP V+ L VH HWPHKM++N+ T++
Sbjct: 443 NESLKCFRSILFNVFLCS*NYIVGFI*IFLFWNIPDVYNLLVHNHWPHKMLINMRCTVKV 264
Query: 364 RQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI* 185
QDQPA+++Q + PK +P + SK L+QSDK VQHPVSEPLLIIYR FC YCSNR I
Sbjct: 263 GQDQPAIEKQFSVRPKREPFNYCSKGELEQSDKRVQHPVSEPLLIIYRRFCFYCSNRRIQ 84
Query: 184 RISK*YEWPGKDIEVLGQHLEE 119
RIS+* PG++I+V +HL +
Sbjct: 83 RISE*NYGPGENIQVADEHLRK 18
Score = 147 bits (316), Expect = 9e-035
Identities = 75/137 (54%), Positives = 92/137 (67%)
Frame = -2 / -2
Query: 536 SQMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKAR 357
SQML + FVQ IS+QL H ++YL FLEYT C GSQ+LAAQN KH H *++AR
Sbjct: 435 SQML*IHFVQCISVQLKLHRRVYLNFPFLEYTRCLQLAGSQSLAAQNAHKHALHR*SRAR 256
Query: 356 PTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIEDK 177
PTS+*+T TK A + L+Q+ A+T+** STTPSK*A ADHL + L LLL Q H EDK
Sbjct: 255 PTSN*KTVFRKTKKGAIQLLQQR*ARTE**TSTTPSK*AIADHL*EILFLLLEQTHTEDK 76
Query: 176 QVI*VARQGHRSSWPAP 126
+V AR+ H AP
Sbjct: 75 RVKLWARREHPGC*RAP 25
Score = 78.0 bits (164), Expect(2) = 2e-029
Identities = 38/69 (55%), Positives = 47/69 (68%)
Frame = +1 / +2
Query: 127 GAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVLIYHFV*ANFCSNYR 306
GA Q+ C RA T LSS+C C SNR+K S R*SA+AHLLGVVL+YH V A+ C +
Sbjct: 26 GARQQPGCSRRAHSFTRLSSVCVCSSNRNKISYR*SAMAHLLGVVLVYHSVRAHLCCSN* 205
Query: 307 VASILVICK 333
+A LV+ K
Sbjct: 206 MAPFLVLRK 232
Score = 71.6 bits (150), Expect(2) = 2e-029
Identities = 35/67 (52%), Positives = 43/67 (64%)
Frame = +3 / +1
Query: 330 QSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDIL 509
++C AGWSC V MF +ILCGQ L*T+K *T GIFQ+ + +N M QL R+ L
Sbjct: 229 ENCFSIAGWSCPTLTVQRMFMSILCGQ*L*TSKL*TSGIFQKRKIQINPTM*FQLHRNTL 408
Query: 510 NKTDQKH 530
NK D KH
Sbjct: 409 NKMDLKH 429
>gb|BE559134.1|BE559134 HV_CEb0023A15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023A15f, mRNA sequence
Length = 551
Score = 207 bits (446), Expect(2) = 3e-065
Identities = 76/87 (87%), Positives = 84/87 (96%)
Frame = +2 / +1
Query: 188 YASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPW 367
YASVRAIETK+P+DDQQWLTYWVLYSFITLFELTFA +IEWLPFWSY KLFFNCWLVLP+
Sbjct: 289 YASVRAIETKSPIDDQQWLTYWVLYSFITLFELTFAAVIEWLPFWSYGKLFFNCWLVLPY 468
Query: 368 FNGAAYVYDHFVRPMFVNRQIVNIWYI 448
FNGAA+VY+HFVRPM VN+Q+VNIWYI
Sbjct: 469 FNGAAHVYEHFVRPMIVNQQVVNIWYI 549
Score = 143 bits (307), Expect(2) = 1e-045
Identities = 68/87 (78%), Positives = 70/87 (80%)
Frame = -1 / -1
Query: 447 IYHMFTIWRFTNIGRTKWS*T*AAPLNQGKTNQQLKNSFAYDQNGSHSIIGAKVSSNKVI 268
IY MFT FT IGRTK S*T AAPL GKTNQQLKNSF DQ GSHSI AKVSSN+VI
Sbjct: 548 IYQMFTTCWFTIIGRTKCS*TCAAPLK*GKTNQQLKNSFP*DQKGSHSITAAKVSSNRVI 369
Query: 267 NEYNTQ*VSHC*SSTGFFVSIALTEAY 187
NEYNTQ*VSHC*SS G FVSIA T+AY
Sbjct: 368 NEYNTQ*VSHC*SSIGDFVSIARTDAY 288
Score = 132 bits (283), Expect(2) = 2e-037
Identities = 53/87 (60%), Positives = 66/87 (75%)
Frame = -3 / -3
Query: 448 NIPYVHYLAVHKHWPHKMVVNIGSTIEPRQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSD 269
NIP V+ L VH HWPHKM++N+ T++ QDQPA+++Q + PK +P + SK L+QSD
Sbjct: 549 NIPDVYNLLVHNHWPHKMLINMRCTVKVGQDQPAIEKQFSVRPKREPFNYCSKGELEQSD 370
Query: 268 K*VQHPVSEPLLIIYRIFCLYCSNRSI 188
K VQHPVSEPLLIIYR FC YCSNR I
Sbjct: 369 KRVQHPVSEPLLIIYRRFCFYCSNRRI 289
Score = 102 bits (217), Expect(2) = 1e-024
Identities = 50/87 (57%), Positives = 61/87 (70%)
Frame = -2 / -2
Query: 449 EYTICSLFGGSQTLAAQNGRKHRQHH*TKARPTSS*RTALHMTKMEATR*LEQKLAQTK* 270
EYT C GSQ+LAAQN KH H *++ARPTS+*+T TK A + L+Q+ A+T+*
Sbjct: 550 EYTRCLQLAGSQSLAAQNAHKHALHR*SRARPTSN*KTVFRKTKKGAIQLLQQR*ARTE* 371
Query: 269 *MSTTPSK*ATADHLQDFLSLLL*QKH 189
* STTPSK*A ADHL + L LLL Q H
Sbjct: 370 *TSTTPSK*AIADHL*EILFLLLEQTH 290
Score = 62.5 bits (130), Expect(2) = 3e-065
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +2 / +3
Query: 71 FCSTGGGAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASV 199
F ++G +MGSGSFLKVL N DVLAGP++SLAYPL +V
Sbjct: 66 FAASGERIAGQMGSGSFLKVLVSNLDVLAGPIVSLAYPL*VNV 194
Score = 62.0 bits (129), Expect(3) = 1e-024
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +1 / +3
Query: 187 ICFC*SNRDKKSCR*SAVAHLLGVVLIYHFV*ANFCSNYRVASILVICK 333
+C C SNR+K S R*SA+AHLLGVVL+YH V A+ C + +A LV+ K
Sbjct: 288 VCVCSSNRNKISYR*SAMAHLLGVVLVYHSVRAHLCCSN*MAPFLVLRK 434
Score = 60.2 bits (125), Expect(2) = 1e-045
Identities = 27/45 (60%), Positives = 30/45 (66%)
Frame = -1 / -2
Query: 198 TEAYRG*ASDMSGPARTSKFLASTLRKDPDPILLSAPPPVEQNYR 64
T YRG*AS+ GPARTS+ L STLRKDPDPI + P N R
Sbjct: 193 TFTYRG*ASETMGPARTSRLLTSTLRKDPDPICPAIRSPEAANLR 59
Score = 48.7 bits (100), Expect(3) = 1e-024
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +3 / +2
Query: 330 QSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIF 449
++C AGWSC V MF +ILCGQ L*T+K *T GIF
Sbjct: 431 ENCFSIAGWSCPTLTVQRMFMSILCGQ*L*TSKL*TSGIF 550
Score = 44.1 bits (90), Expect(2) = 2e-037
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -3 / -1
Query: 184 RISK*YEWPGKDIEVLGQHLEERSGPHL 101
RIS+* PG++I+V +HLEERSGPHL
Sbjct: 179 RISE*NYGPGENIQVADEHLEERSGPHL 96
Score = 40.5 bits (82), Expect(3) = 1e-024
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = +1 / +2
Query: 64 PIVLFYWRRSREQDGVRIFPQGAGQELRCPCRATHITCLSSICFC 198
P + + R +GVRIFPQGA Q+ C RA T LSS+ C
Sbjct: 59 PQIRSFGRADCWANGVRIFPQGARQQPGCSRRAHSFTRLSSVSKC 193
Score = 31.3 bits (62), Expect(2) = 1e-024
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -2 / -3
Query: 185 EDKQVI*VARQGHRSSWPAP*GKIRTP 105
EDK+V AR+ H AP*GKIRTP
Sbjct: 180 EDKRVKLWARREHPGC*RAP*GKIRTP 100
>gb|BE194848.2|BE194848 HVSMEh0087D14f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0087D14f, mRNA sequence
Length = 486
Score = 243 bits (524), Expect = 2e-063
Identities = 93/118 (78%), Positives = 105/118 (88%)
Frame = +2 / +2
Query: 71 FCSTGGGAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTY 250
F ++G +MGSGSFLKVL N DVLAGP++SLAYPLYASVRAIETK+P+DDQQWLTY
Sbjct: 131 FAASGERIAGQMGSGSFLKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQWLTY 310
Query: 251 WVLYSFITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNR 424
WVLYSFITLFELTFA +IEWLP WSY KLFFNCWLVLP+FNGAA+VY+HFVRPM VN+
Sbjct: 311 WVLYSFITLFELTFAAVIEWLPXWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQ 484
Score = 184 bits (396), Expect = 8e-046
Identities = 87/119 (73%), Positives = 92/119 (77%)
Frame = -1 / -1
Query: 420 FTNIGRTKWS*T*AAPLNQGKTNQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VS 241
FT IGRTK S*T AAPL GKTNQQLKNSF D GSHSI AKVSSN+VINEYNTQ*VS
Sbjct: 480 FTIIGRTKCS*TCAAPLK*GKTNQQLKNSFP*DXKGSHSITAAKVSSNRVINEYNTQ*VS 301
Query: 240 HC*SSTGFFVSIALTEAYRG*ASDMSGPARTSKFLASTLRKDPDPILLSAPPPVEQNYR 64
HC*SS G FVSIA T+AYRG*AS+ GPARTS+ L STLRKDPDPI + P N R
Sbjct: 300 HC*SSIGDFVSIARTDAYRG*ASETMGPARTSRLLTSTLRKDPDPICPAIRSPEAANLR 124
Score = 159 bits (342), Expect = 2e-038
Identities = 65/107 (60%), Positives = 82/107 (76%)
Frame = -3 / -3
Query: 421 VHKHWPHKMVVNIGSTIEPRQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSE 242
VH HWPHKM++N+ T++ QDQPA+++Q + P +P + SK L+QSDK VQHPVSE
Sbjct: 481 VHNHWPHKMLINMRCTVKVGQDQPAIEKQFSVRPXREPFNYCSKGELEQSDKRVQHPVSE 302
Query: 241 PLLIIYRIFCLYCSNRSI*RISK*YEWPGKDIEVLGQHLEERSGPHL 101
PLLIIYR FC YCSNR I RIS+* PG++I+V +HLEERSGPHL
Sbjct: 301 PLLIIYRRFCFYCSNRRIQRISE*NYGPGENIQVADEHLEERSGPHL 161
Score = 118 bits (253), Expect = 4e-026
Identities = 61/106 (57%), Positives = 74/106 (69%)
Frame = -2 / -2
Query: 422 GSQTLAAQNGRKHRQHH*TKARPTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK* 243
GSQ+LAAQN KH H *++ARPTS+*+T T A + L+Q+ A+T+** STTPSK*
Sbjct: 482 GSQSLAAQNAHKHALHR*SRARPTSN*KTVFRKTXKGAIQLLQQR*ARTE**TSTTPSK* 303
Query: 242 ATADHLQDFLSLLL*QKHIEDKQVI*VARQGHRSSWPAP*GKIRTP 105
A ADHL + L LLL Q H EDK+V AR+ H AP*GKIRTP
Sbjct: 302 AIADHL*EILFLLLEQTHTEDKRVKLWARREHPGC*RAP*GKIRTP 165
Score = 93.6 bits (198), Expect(2) = 2e-024
Identities = 46/90 (51%), Positives = 58/90 (64%)
Frame = +1 / +1
Query: 64 PIVLFYWRRSREQDGVRIFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVA 243
P + + R +GVRIFPQGA Q+ C RA T LSS+C C SNR+K S R*SA+A
Sbjct: 124 PQIRSFGRADCWANGVRIFPQGARQQPGCSRRAHSFTRLSSVCVCSSNRNKISYR*SAMA 303
Query: 244 HLLGVVLIYHFV*ANFCSNYRVASILVICK 333
HLLGVVL+YH V A+ C + +A V+ K
Sbjct: 304 HLLGVVLVYHSVRAHLCCSN*MAPFXVLRK 393
Score = 39.1 bits (79), Expect(2) = 2e-024
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +3 / +3
Query: 330 QSCSLTAGWSCLGSMVLPMFTTILCGQCL*TA 425
++C AGWSC V MF +ILCGQ L*T+
Sbjct: 390 ENCFSIAGWSCPTLTVQRMFMSILCGQ*L*TS 485
>gb|AV917913.1|AV917913 AV917913 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a21 3', mRNA sequence
Length = 675
Score = 225 bits (485), Expect = 4e-058
Identities = 83/103 (80%), Positives = 94/103 (91%)
Frame = +2 / -2
Query: 227 DDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVR 406
DDQQWLTYWVLYSFITLFELTFA +IEWLPFWSY KLFFNCWLVLP+FNGAA+VY+HFVR
Sbjct: 674 DDQQWLTYWVLYSFITLFELTFAAVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVR 495
Query: 407 PMFVNRQIVNIWYIPRNEKLGKSDDVLSAAERYIEQNGPEAFE 535
PM VN+Q+VNIWYIP+ E K DDV+SAA++YIEQNG +AFE
Sbjct: 494 PMIVNQQVVNIWYIPKKENSDKPDDVISAAQKYIEQNGSKAFE 366
Score = 165 bits (355), Expect = 4e-040
Identities = 77/103 (74%), Positives = 80/103 (77%)
Frame = -1 / +1
Query: 534 SNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQGKT 355
SNA PFCS+Y AA+ TSS L FSF GIY MFT FT IGRTK S*T AAPL GKT
Sbjct: 367 SNALDPFCSMYFCAAEITSSGLSEFSFFGIYQMFTTCWFTIIGRTKCS*TCAAPLK*GKT 546
Query: 354 NQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SS 226
NQQLKNSF DQ GSHSI AKVSSN+VINEYNTQ*VSHC*SS
Sbjct: 547 NQQLKNSFP*DQKGSHSITAAKVSSNRVINEYNTQ*VSHC*SS 675
Score = 146 bits (314), Expect = 2e-034
Identities = 60/106 (56%), Positives = 79/106 (74%)
Frame = -3 / +3
Query: 544 DELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIEP 365
+E LKCF S+LFN+ LCS* I+ F *+ + WNIP V+ L VH HWPHKM++N+ T++
Sbjct: 357 NESLKCFRSILFNVFLCS*NYIVGFI*IFLFWNIPDVYNLLVHNHWPHKMLINMRCTVKV 536
Query: 364 RQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLII 227
QDQPA+++Q + PK +P + SK L+QSDK VQHPVSEPLLII
Sbjct: 537 GQDQPAIEKQFSVRPKREPFNYCSKGELEQSDKRVQHPVSEPLLII 674
Score = 123 bits (264), Expect = 1e-027
Identities = 59/103 (57%), Positives = 73/103 (70%)
Frame = -2 / +2
Query: 536 SQMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKAR 357
SQML + FVQ IS+QL H ++YL FLEYT C GSQ+LAAQN KH H *++AR
Sbjct: 365 SQML*IHFVQCISVQLKLHRRVYLNFPFLEYTRCLQLAGSQSLAAQNAHKHALHR*SRAR 544
Query: 356 PTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADH 228
PTS+*+T TK A + L+Q+ A+T+** STTPSK*A ADH
Sbjct: 545 PTSN*KTVFRKTKKGAIQLLQQR*ARTE**TSTTPSK*AIADH 673
>gb|BQ470302.1|BQ470302 HX02H13r HX Hordeum vulgare subsp. vulgare cDNA clone HX02H13
5-PRIME, mRNA sequence
Length = 530
Score = 223 bits (482), Expect = 1e-057
Identities = 88/100 (88%), Positives = 92/100 (92%)
Frame = +2 / +2
Query: 86 GGAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYS 265
GG +MGSGSFLKVLAKNFDVLAGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYS
Sbjct: 230 GGCGREMGSGSFLKVLAKNFDVLAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYS 409
Query: 266 FITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAY 385
FITLFELTFAPI+EWLPFW Y KLFFNCWLV P FNGAAY
Sbjct: 410 FITLFELTFAPILEWLPFWPYGKLFFNCWLVFPCFNGAAY 529
Score = 187 bits (402), Expect = 1e-046
Identities = 86/100 (86%), Positives = 89/100 (89%)
Frame = -1 / -3
Query: 384 *AAPLNQGKTNQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSI 205
*AAPL QGKT+QQLKNSF QNGSHS IGAKVSSNKVINEY+TQ*VSHC*SST FVSI
Sbjct: 528 *AAPLKQGKTSQQLKNSFP*GQNGSHSSIGAKVSSNKVINEYSTQ*VSHC*SST*DFVSI 349
Query: 204 ALTEAYRG*ASDMSGPARTSKFLASTLRKDPDPILLSAPP 85
ALTEAYRG*AS+ SGPARTSKFLASTLRKDPDPI L PP
Sbjct: 348 ALTEAYRG*ASETSGPARTSKFLASTLRKDPDPISLPHPP 229
Score = 157 bits (337), Expect = 1e-037
Identities = 68/96 (70%), Positives = 77/96 (80%)
Frame = -3 / -2
Query: 385 IGSTIEPRQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLY 206
I STIE R+D PAV+EQ I P+WKP SKS LKQSDK VQHPVS+PLLIIY FC
Sbjct: 529 ISSTIEARKD*PAVEEQFSIGPEWKPFKYRSKSELKQSDKRVQHPVSKPLLIIYLRFCFN 350
Query: 205 CSNRSI*RISK*YEWPGKDIEVLGQHLEERSGPHLA 98
CS+R I*RISK +WPG+D+EVLGQHLEERSGPHL+
Sbjct: 349 CSHRGI*RISKRNQWPGEDVEVLGQHLEERSGPHLS 242
Score = 142 bits (304), Expect = 4e-033
Identities = 63/100 (63%), Positives = 72/100 (72%)
Frame = +1 / +1
Query: 85 RRSREQDGVRIFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVL 264
RR RE+DGVRIFPQGAGQELR P RAT CLSSIC C SN +K S R*SA+A+LLG VL
Sbjct: 229 RRVRERDGVRIFPQGAGQELRRPRRATGFACLSSICLCESN*NKISSR*SAMAYLLGAVL 408
Query: 265 IYHFV*ANFCSNYRVASILVICKXXXXXXXXXXXXQWCCL 384
+YHFV*A+FCS+ +ASIL + K QWCCL
Sbjct: 409 VYHFV*AHFCSDT*MASILALWKTVLQLLASLSLLQWCCL 528
Score = 141 bits (303), Expect = 5e-033
Identities = 69/106 (65%), Positives = 77/106 (72%)
Frame = -2 / -1
Query: 386 HRQHH*TKARPTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSL 207
H+QHH*+K R SS*RT H +MEA + EQK AQTK** ST PSK*A ADHL + L
Sbjct: 530 HKQHH*SKERLASS*RTVFHRARMEAIQVSEQK*AQTK**TSTAPSK*AIADHLLEILFQ 351
Query: 206 LL*QKHIEDKQVI*VARQGHRSSWPAP*GKIRTPSCSLLLLQ*NRT 69
LL Q+HIEDKQ VAR+G RSSWPAP*GKIRTPS S LL R+
Sbjct: 350 LLSQRHIEDKQAKPVARRGRRSSWPAP*GKIRTPSLSRTLLSSTRS 213
>gb|CA024250.1|CA024250 HZ48M15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48M15
5-PRIME, mRNA sequence
Length = 333
Score = 204 bits (439), Expect = 9e-052
Identities = 80/93 (86%), Positives = 85/93 (91%)
Frame = +2 / +2
Query: 86 GGAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYS 265
GG+ +MGSGSFLKVLAKNFDVLAGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYS
Sbjct: 53 GGSXREMGSGSFLKVLAKNFDVLAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYS 232
Query: 266 FITLFELTFAPIIEWLPFWSYAKLFFNCWLVLP 364
FITLFELT API+EWLPFW Y KL FNCWLV P
Sbjct: 233 FITLFELTXAPILEWLPFWPYGKLXFNCWLVFP 331
Score = 175 bits (376), Expect = 5e-043
Identities = 80/94 (85%), Positives = 83/94 (88%)
Frame = -1 / -1
Query: 366 QGKTNQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAY 187
QGKT+QQLK SF QNGSHS IGAKVSSNKVINEY+TQ*VSHC*SST FVSIALTEAY
Sbjct: 333 QGKTSQQLKXSFP*GQNGSHSSIGAKVSSNKVINEYSTQ*VSHC*SST*DFVSIALTEAY 154
Query: 186 RG*ASDMSGPARTSKFLASTLRKDPDPILLSAPP 85
RG*AS+ SGPARTSKFLASTLRKDPDPI L PP
Sbjct: 153 RG*ASETSGPARTSKFLASTLRKDPDPISLXDPP 52
Score = 143 bits (307), Expect = 2e-033
Identities = 63/94 (67%), Positives = 72/94 (76%)
Frame = -3 / -3
Query: 364 RQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI* 185
R+D PAV+ Q I P+WKP S S LKQSDK VQHPVS+PLLIIY FC CS+R I*
Sbjct: 331 RKD*PAVEXQFSIGPEWKPFKYRSXSELKQSDKRVQHPVSKPLLIIYLRFCFNCSHRGI* 152
Query: 184 RISK*YEWPGKDIEVLGQHLEERSGPHLALCSSS 83
RISK +WPG+D+EVLGQHLEERSGPHL+ SS
Sbjct: 151 RISKRNQWPGEDVEVLGQHLEERSGPHLSXGPSS 50
Score = 119 bits (255), Expect = 2e-026
Identities = 61/99 (61%), Positives = 67/99 (67%)
Frame = -2 / -2
Query: 365 KARPTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHI 186
K R SS* T H +MEA + E K AQTK** ST PSK*A ADHL + L LL Q+HI
Sbjct: 332 KERLASS*XTVFHRARMEAIQVSEXK*AQTK**TSTAPSK*AIADHLLEILFQLLSQRHI 153
Query: 185 EDKQVI*VARQGHRSSWPAP*GKIRTPSCSLLLLQ*NRT 69
EDKQ VAR+G RSSWPAP*GKIRTPS LL R+
Sbjct: 152 EDKQAKPVARRGRRSSWPAP*GKIRTPSLXXTLLSSTRS 36
Score = 117 bits (251), Expect = 8e-026
Identities = 55/83 (66%), Positives = 64/83 (77%)
Frame = +1 / +1
Query: 85 RRSREQDGVRIFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVL 264
RR +DGVRIFPQGAGQELR P RAT CLSSIC C SN +K S R*SA+A+LLG VL
Sbjct: 52 RRVXXRDGVRIFPQGAGQELRRPRRATGFACLSSICLCESN*NKISSR*SAMAYLLGAVL 231
Query: 265 IYHFV*ANFCSNYRVASILVICK 333
+YHFV*A+F S+ +ASIL + K
Sbjct: 232 VYHFV*AHFXSDT*MASILALWK 300
>gb|CB875139.1|CB875139 HX07G08w HX Hordeum vulgare subsp. vulgare cDNA clone HX07G08
3-PRIME, mRNA sequence
Length = 625
Score = 107 bits (228), Expect(2) = 6e-035
Identities = 41/50 (82%), Positives = 45/50 (90%)
Frame = +2 / -1
Query: 386 VYDHFVRPMFVNRQIVNIWYIPRNEKLGKSDDVLSAAERYIEQNGPEAFE 535
VY+HF RPMFVNRQIVNIWY+PR +KL K DDVLSAAE+YIE NGPEAFE
Sbjct: 625 VYEHFARPMFVNRQIVNIWYVPRKDKLSKPDDVLSAAEKYIELNGPEAFE 476
Score = 94.1 bits (199), Expect(2) = 1e-026
Identities = 35/54 (64%), Positives = 44/54 (81%)
Frame = -3 / +2
Query: 547 ADELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVN 386
AD LLKCFWS+ FNI LC *+ IIRFT L++ W++P V YLA+HKHWP +M+VN
Sbjct: 464 AD*LLKCFWSI*FNIFLCG*EYIIRFTQLILPWDVPDVDYLAIHKHWPREMLVN 625
Score = 60.6 bits (126), Expect(2) = 6e-035
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2 / -1
Query: 593 LEDGEAENRAKAERESWGENPFYDKNYRY*TS 688
L+ EAE KAER+SWGENPFYDKNYR+* S
Sbjct: 412 LQGAEAEKMGKAERDSWGENPFYDKNYRH*IS 317
Score = 46.4 bits (95), Expect(2) = 1e-026
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = -1 / +3
Query: 687 LV*YL*FLS*KGFSPHDSLSALARFSASPSSKFNR 583
L+* *FLS* GFSPH+SLSAL FSAS K +R
Sbjct: 318 LI*CR*FLS*NGFSPHESLSALPIFSASAPCKIDR 422
>gb|BF623807.2|BF623807 HVSMEa0007B05f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007B05f, mRNA sequence
Length = 496
Score = 133 bits (285), Expect = 2e-030
Identities = 51/107 (47%), Positives = 68/107 (63%)
Frame = +2 / +1
Query: 116 SFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 295
S L + + LAGP + L YPLYASV+A+E+ + +DD+QWL YW+LYSF+TL E+
Sbjct: 115 SKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEMVLE 294
Query: 296 PIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVN 436
+I W+P W KL F WL LP F GAA++YD FVR + N
Sbjct: 295 SLIYWIPIWYELKLLFLAWLALPNFRGAAFIYDRFVREQLRKHGLTN 435
>gb|BM816042.1|BM816042 HC110A01_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110A01_T3.ab1 similar to (AF290892) AtHVA22e
[Arabidopsis thaliana],abscisic acid-induced protein
HVA22 (L19119) A22 [Hordeum vulgare],gene_id:MFB16.12
pir|T05517 similar to unknown protein [Arabidopsis
thaliana], mRNA sequence
Length = 821
Score = 133 bits (285), Expect = 2e-030
Identities = 51/107 (47%), Positives = 68/107 (63%)
Frame = +2 / +3
Query: 116 SFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 295
S L + + LAGP + L YPLYASV+A+E+ + +DD+QWL YW+LYSF+TL E+
Sbjct: 135 SKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEMVLE 314
Query: 296 PIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVN 436
+I W+P W KL F WL LP F GAA++YD FVR + N
Sbjct: 315 SLIYWIPIWYELKLLFLAWLALPNFRGAAFIYDRFVREQLRKHGLTN 455
>gb|BQ768743.1|BQ768743 EBro08_SQ012_F15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F15 5', mRNA sequence
Length = 622
Score = 133 bits (285), Expect = 2e-030
Identities = 51/107 (47%), Positives = 68/107 (63%)
Frame = +2 / +3
Query: 116 SFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 295
S L + + LAGP + L YPLYASV+A+E+ + +DD+QWL YW+LYSF+TL E+
Sbjct: 117 SKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEMVLE 296
Query: 296 PIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVN 436
+I W+P W KL F WL LP F GAA++YD FVR + N
Sbjct: 297 SLIYWIPIWYELKLLFLAWLALPNFRGAAFIYDRFVREQLRKHGLTN 437
>gb|BI952411.1|BI952411 HVSMEm0006F13f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0006F13f, mRNA sequence
Length = 780
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / +2
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 197 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 376
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 377 KLLFVAWLALPQFKGASFIYDKVVR 451
>gb|BQ466175.1|BQ466175 HT01M19T HT Hordeum vulgare subsp. vulgare cDNA clone HT01M19
5-PRIME, mRNA sequence
Length = 646
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / +2
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 164 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 343
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 344 KLLFVAWLALPQFKGASFIYDKVVR 418
>gb|BM368471.2|BM368471 EBem08_SQ002_G11_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ002_G11 5', mRNA sequence
Length = 508
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / +3
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 156 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 335
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 336 KLLFVAWLALPQFKGASFIYDKVVR 410
>gb|BM368765.2|BM368765 EBem08_SQ004_I17_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_I17 5', mRNA sequence
Length = 499
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / +2
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 194 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 373
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 374 KLLFVAWLALPQFKGASFIYDKVVR 448
>gb|BU985299.1|BU985299 HF06L17r HF Hordeum vulgare subsp. vulgare cDNA clone HF06L17
5-PRIME, mRNA sequence
Length = 552
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / +3
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 216 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 395
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 396 KLLFVAWLALPQFKGASFIYDKVVR 470
>gb|BU985771.1|BU985771 HF08J06r HF Hordeum vulgare subsp. vulgare cDNA clone HF08J06
5-PRIME, mRNA sequence
Length = 535
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / +3
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 216 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 395
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 396 KLLFVAWLALPQFKGASFIYDKVVR 470
>gb|BU997629.1|BU997629 HI08I18r HI Hordeum vulgare subsp. vulgare cDNA clone HI08I18
5-PRIME, mRNA sequence
Length = 621
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / +3
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 204 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 383
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 384 KLLFVAWLALPQFKGASFIYDKVVR 458
>gb|CA011445.1|CA011445 HT05L12u HT Hordeum vulgare subsp. vulgare cDNA clone HT05L12
3-PRIME, mRNA sequence
Length = 550
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / -3
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 512 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 333
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 332 KLLFVAWLALPQFKGASFIYDKVVR 258
>gb|CA012015.1|CA012015 HT04D03r HT Hordeum vulgare subsp. vulgare cDNA clone HT04D03
5-PRIME, mRNA sequence
Length = 563
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / +1
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 166 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 345
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 346 KLLFVAWLALPQFKGASFIYDKVVR 420
>gb|CA012540.1|CA012540 HT05L12r HT Hordeum vulgare subsp. vulgare cDNA clone HT05L12
5-PRIME, mRNA sequence
Length = 537
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / +1
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 205 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 384
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 385 KLLFVAWLALPQFKGASFIYDKVVR 459
>gb|CB858860.1|CB858860 HI08I18w HI Hordeum vulgare subsp. vulgare cDNA clone HI08I18
3-PRIME, mRNA sequence
Length = 589
Score = 130 bits (279), Expect = 1e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / -1
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 514 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPV 335
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 334 KLLFVAWLALPQFKGASFIYDKVVR 260
>gb|BQ459902.1|BQ459902 HA07M09r HA Hordeum vulgare subsp. vulgare cDNA clone HA07M09
5-PRIME, mRNA sequence
Length = 647
Score = 127 bits (271), Expect = 1e-028
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = +2 / +1
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYA 331
+AGP ++L YPLYAS+ A+E+ + +DD QWL YW++YSFI LFE+ ++ W+P W
Sbjct: 94 IAGPSLTLVYPLYASICAMESTSKLDDGQWLAYWIIYSFIALFEMAAEQVLYWIPLWYEV 273
Query: 332 KLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WLVLP F GA+++Y+ FVR
Sbjct: 274 KLLFVAWLVLPQFRGASFIYEKFVR 348
>gb|BU996496.1|BU996496 HM13M20r HM Hordeum vulgare subsp. vulgare cDNA clone HM13M20
5-PRIME, mRNA sequence
Length = 645
Score = 126 bits (270), Expect = 2e-028
Identities = 48/88 (54%), Positives = 61/88 (69%)
Frame = +2 / +2
Query: 143 FDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFW 322
F L P I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 62 FVSLRRPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVW 241
Query: 323 SYAKLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 242 YPVKLLFVAWLALPQFKGASFIYDKVVR 325
>gb|BU996712.1|BU996712 HM14H24r HM Hordeum vulgare subsp. vulgare cDNA clone HM14H24
5-PRIME, mRNA sequence
Length = 587
Score = 126 bits (270), Expect = 2e-028
Identities = 48/88 (54%), Positives = 61/88 (69%)
Frame = +2 / +2
Query: 143 FDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFW 322
F L P I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W
Sbjct: 68 FVSLRRPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVW 247
Query: 323 SYAKLFFNCWLVLPWFNGAAYVYDHFVR 406
KL F WL LP F GA+++YD VR
Sbjct: 248 YPVKLLFVAWLALPQFKGASFIYDKVVR 331
>gb|BM816057.1|BM816057 HC03F05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC03F05_T3.ab1 similar to (AF290892) AtHVA22e
[Arabidopsis thaliana],abscisic acid-induced protein
HVA22 (L19119) A22 [Hordeum vulgare], mRNA sequence
Length = 872
Score = 125 bits (268), Expect = 4e-028
Identities = 46/96 (47%), Positives = 64/96 (66%)
Frame = +2 / +3
Query: 116 SFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 295
S L + + LAGP + L YPLYASV+A+E+ + +DD+QWL YW+LYSF+TL E+
Sbjct: 75 SKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEMVLE 254
Query: 296 PIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFV 403
+I W+P W KL F WL LP + GA ++YD F+
Sbjct: 255 SLIYWIPIWYELKLLFLAWLALPNYRGAGFIYDRFL 362
>gb|BU985293.1|BU985293 HF06L06r HF Hordeum vulgare subsp. vulgare cDNA clone HF06L06
5-PRIME, mRNA sequence
Length = 603
Score = 111 bits (237), Expect(2) = 1e-024
Identities = 40/73 (54%), Positives = 52/73 (71%)
Frame = +2 / +3
Query: 188 YASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPW 367
YASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W KL F WL LP
Sbjct: 144 YASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPVKLLFVAWLALPQ 323
Query: 368 FNGAAYVYDHFVR 406
F GA+++YD VR
Sbjct: 324 FKGASFIYDKVVR 362
Score = 22.1 bits (42), Expect(2) = 1e-024
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 152 LAGPLISLAYPL 187
+AGP I+L YPL
Sbjct: 107 VAGPSITLLYPL 142
>gb|BU986482.1|BU986482 HF11P23r HF Hordeum vulgare subsp. vulgare cDNA clone HF11P23
5-PRIME, mRNA sequence
Length = 579
Score = 88.1 bits (186), Expect(2) = 1e-024
Identities = 32/53 (60%), Positives = 42/53 (79%)
Frame = +2 / +1
Query: 152 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEW 310
+AGP I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W
Sbjct: 97 VAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYW 255
Score = 45.5 bits (93), Expect(2) = 1e-024
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2 / +2
Query: 311 LPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVR 406
+P W KL F WL LP F GA+++YD VR
Sbjct: 341 IPVWYPVKLLFVAWLALPQFKGASFIYDKVVR 436
>gb|BQ665185.1|BQ665185 HX02H13u HX Hordeum vulgare subsp. vulgare cDNA clone HX02H13
3-PRIME, mRNA sequence
Length = 558
Score = 71.6 bits (150), Expect(2) = 3e-024
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +2 / -1
Query: 434 NIWYIPRNEKLGKSDDVLSAAERYIEQNGPEAFE 535
NIWY+PR +KL K DDVLSAAE+YIE NGPEAFE
Sbjct: 558 NIWYVPRKDKLSKPDDVLSAAEKYIELNGPEAFE 457
Score = 60.6 bits (126), Expect(2) = 3e-024
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2 / -1
Query: 593 LEDGEAENRAKAERESWGENPFYDKNYRY*TS 688
L+ EAE KAER+SWGENPFYDKNYR+* S
Sbjct: 393 LQGAEAEKMGKAERDSWGENPFYDKNYRH*IS 298
>gb|AU090054.2|AU090054 AU090054 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_021, mRNA sequence
Length = 485
Score = 109 bits (233), Expect(2) = 2e-023
Identities = 41/83 (49%), Positives = 55/83 (66%)
Frame = +2 / +1
Query: 116 SFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 295
S L + + LAGP + L YPLYASV+A+E+ + +DD+QWL YW+LYSF+TL E+
Sbjct: 130 SKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEMVLE 309
Query: 296 PIIEWLPFWSYAKLFFNCWLVLP 364
+I W+P W KL F WL LP
Sbjct: 310 SLIYWIPIWYELKLLFLAWLALP 378
Score = 21.7 bits (41), Expect(2) = 2e-023
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2 / +2
Query: 374 GAAYVYDHFVR 406
G+ ++YD FVR
Sbjct: 386 GSGFIYDRFVR 418
>gb|AU090079.1|AU090079 AU090079 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_049, mRNA sequence
Length = 440
Score = 109 bits (233), Expect = 2e-023
Identities = 41/83 (49%), Positives = 55/83 (66%)
Frame = +2 / +2
Query: 116 SFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 295
S L + + LAGP + L YPLYASV+A+E+ + +DD+QWL YW+LYSF+TL E+
Sbjct: 131 SKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEMVLE 310
Query: 296 PIIEWLPFWSYAKLFFNCWLVLP 364
+I W+P W KL F WL LP
Sbjct: 311 SLIYWIPIWYELKLLFLAWLALP 379
>gb|BF064571.2|BF064571 HV_CEb0015O16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0015O16f, mRNA sequence
Length = 853
Score = 91.8 bits (194), Expect(2) = 4e-022
Identities = 36/74 (48%), Positives = 48/74 (64%)
Frame = +2 / +2
Query: 116 SFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 295
S L + + LAGP + L YPLYASV+A+E+ + +DD QWL YW+LYSF TL E+
Sbjct: 140 SMLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDD*QWLAYWILYSFGTLVEMVLE 319
Query: 296 PIIEWLPFWSYAKL 337
+I W+P W KL
Sbjct: 320 SLIYWIPIWYELKL 361
Score = 33.1 bits (66), Expect(2) = 4e-022
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2 / +3
Query: 338 FFNCWLVLPWFNGAAYVYDHFVR 406
+F L LP F GAA++YD FVR
Sbjct: 363 WFLARLALPNFRGAAFIYDRFVR 431
>gb|BU985540.1|BU985540 HF07O06r HF Hordeum vulgare subsp. vulgare cDNA clone HF07O06
5-PRIME, mRNA sequence
Length = 202
Score = 105 bits (223), Expect = 6e-022
Identities = 38/66 (57%), Positives = 48/66 (72%)
Frame = +2 / +1
Query: 167 ISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYAKLFFN 346
I+L YPLYASV A+E+ + VDD+QWL YW+LYSFITL E+ P++ W+P W KL F
Sbjct: 4 ITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAVPVLYWIPVWYPVKLLFV 183
Query: 347 CWLVLP 364
WL LP
Sbjct: 184 AWLALP 201
>gb|CA004284.1|CA004284 HS17C06r HS Hordeum vulgare subsp. vulgare cDNA clone HS17C06
5-PRIME, mRNA sequence
Length = 310
Score = 103 bits (220), Expect = 2e-021
Identities = 41/57 (71%), Positives = 48/57 (84%)
Frame = +2 / +2
Query: 71 FCSTGGGAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQW 241
F ++G +MGSGSFLKVL N DVLAGP++SLAYPLYASVRAIETK+P+DDQQW
Sbjct: 140 FAASGERIAGQMGSGSFLKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQW 310
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 449,023,433
Number of Sequences: 312970
Number of extensions: 6770479
Number of successful extensions: 41817
Number of sequences better than 1.0e-020: 54
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12420603005
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)