TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943885.2.1
(581 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedl... 199 2e-064
gb|BF621553.2|BF621553 HVSMEa0011G05f Hordeum vulgare seedl... 150 5e-059
gb|CB859283.1|CB859283 HI09P17w HI Hordeum vulgare subsp. v... 107 1e-048
gb|BI947779.1|BI947779 HVSMEl0006O13f Hordeum vulgare spike... 127 6e-048
gb|BQ464840.1|BQ464840 HU01M16T HU Hordeum vulgare subsp. v... 100 1e-031
gb|BQ663266.1|BQ663266 HU01M16w HU Hordeum vulgare subsp. v... 100 1e-031
gb|CA015437.1|CA015437 HT14F01r HT Hordeum vulgare subsp. v... 100 5e-030
gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA li... 90 6e-024
gb|BF255286.3|BF255286 HVSMEf0006H07f Hordeum vulgare seedl... 100 7e-024
gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA li... 90 9e-024
gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. v... 95 1e-022
gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedl... 94 2e-022
gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. v... 85 7e-022
gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedl... 85 7e-022
gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, dro... 98 5e-021
gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA li... 89 9e-021
>gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007K11f, mRNA sequence
Length = 697
Score = 199 bits (429), Expect(2) = 2e-064
Identities = 74/110 (67%), Positives = 91/110 (82%)
Frame = +2 / +2
Query: 5 QLDELGNGLCDSGKPFVWVLRSNEAEKLSRQLGGRCKERGLIVPFCPQLEVLAHKATGCF 184
QL+ELGNGLC+S KPF+WV+RSNE KLS +L +C + GLI +CPQLEVLAH+A GCF
Sbjct: 113 QLEELGNGLCNSSKPFLWVVRSNEEHKLSEELKEKCGKIGLIGSWCPQLEVLAHRAIGCF 292
Query: 185 LTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVESAWGIGVRMRKGSL 334
+THCGWNST+E++ +GVP V +P WADQPT AKYVESAWG+GVR RK +
Sbjct: 293 ITHCGWNSTLEALVNGVPFVGIPHWADQPTIAKYVESAWGMGVRARKNKI 442
Score = 132 bits (282), Expect(2) = 3e-042
Identities = 58/94 (61%), Positives = 65/94 (69%)
Frame = -3 / -2
Query: 324 FRMRTPIPHALSTYLAVVGWSAHWGIATIGTPLAMDSIVEFHPQCVRKQPVALCASTSS* 145
FR RTPIPHALSTY A+VGWSA GI T GTPL S VEFHPQ V KQP+ALCA TSS
Sbjct: 432 FRARTPIPHALSTYFAMVGWSAQCGIPTKGTPLTSASSVEFHPQWVMKQPIALCARTSSW 253
Query: 144 GQKGTMRPLSLHLPPSCRDSFSASLDLSTQTKGL 43
G + P+ H S D+ +SLDL+TQ KGL
Sbjct: 252 GHHEPINPIFPHFSLSSSDNLCSSLDLTTQRKGL 151
Score = 66.6 bits (139), Expect(2) = 2e-064
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +2 / +2
Query: 326 GSLVRKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGG 454
G L ++EV+RC+ EVM GERK Y +NA WM K +EAMQEGG
Sbjct: 443 GCLKKEEVDRCLIEVMDGERKDKYKKNAMNWMQKGQEAMQEGG 571
Score = 59.3 bits (123), Expect(2) = 3e-042
Identities = 25/43 (58%), Positives = 28/43 (65%)
Frame = -3 / -2
Query: 453 PPSCMASLALCIQRAAFLPYTCFLSPPITSLMHLSTSFLTKEP 325
PPSC+AS CIQ AF Y FLSP ITS+ HLSTS + P
Sbjct: 570 PPSCIASWPFCIQFMAFFLYLSFLSPSITSIRHLSTSSFFRHP 442
>gb|BF621553.2|BF621553 HVSMEa0011G05f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011G05f, mRNA sequence
Length = 797
Score = 150 bits (323), Expect(2) = 5e-059
Identities = 56/81 (69%), Positives = 68/81 (83%)
Frame = +2 / +3
Query: 83 KLSRQLGGRCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWA 262
KLS +L +C + GLIV +CPQLEVLAH+A GCF+THCGWNST+E++ +GVP V +P WA
Sbjct: 9 KLSEELKEKCGKIGLIVSWCPQLEVLAHRAIGCFVTHCGWNSTLEALVNGVPFVGIPHWA 188
Query: 263 DQPTTAKYVESAWGIGVRMRK 325
DQPT AKYVESAWG+GVR RK
Sbjct: 189 DQPTIAKYVESAWGMGVRARK 251
Score = 115 bits (245), Expect(2) = 1e-047
Identities = 50/80 (62%), Positives = 55/80 (68%)
Frame = -3 / -2
Query: 324 FRMRTPIPHALSTYLAVVGWSAHWGIATIGTPLAMDSIVEFHPQCVRKQPVALCASTSS* 145
FR RTPIPHALSTY A+VGWSA GI T GTPL S VEFHPQ V KQP+ALCA TSS
Sbjct: 250 FRARTPIPHALSTYFAMVGWSAQCGIPTKGTPLTSASSVEFHPQWVTKQPIALCARTSSW 71
Query: 144 GQKGTMRPLSLHLPPSCRDS 85
G T+ P+ H S D+
Sbjct: 70 GHHETINPIFPHFSLSSSDN 11
Score = 96.8 bits (205), Expect(2) = 5e-059
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = +2 / +3
Query: 320 RKGSLVRKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKYLP 499
+ G L ++EVERCI EVM GERK Y +NA WM KAKEAMQEGGSSDK++ EFA KY
Sbjct: 255 KNGCLKKEEVERCIIEVMDGERKDEYKKNAMNWMQKAKEAMQEGGSSDKHVTEFATKYSA 434
Query: 500 K*ISDYVLL 526
* + VLL
Sbjct: 435 I*NLNNVLL 461
Score = 94.5 bits (200), Expect(2) = 1e-047
Identities = 41/70 (58%), Positives = 48/70 (68%)
Frame = -3 / -2
Query: 531 YPRRT*SEIYFGKYLAANSAMFLSELPPSCMASLALCIQRAAFLPYTCFLSPPITSLMHL 352
Y +T + Y +YL ANS LSELPPSC+ASLA CIQ AF Y+ FLSP ITS+MHL
Sbjct: 466 YLSKTLFKFYIAEYLVANSVTCLSELPPSCIASLAFCIQFMAFFLYSSFLSPSITSIMHL 287
Query: 351 STSFLTKEPF 322
STS + PF
Sbjct: 286 STSSFFRHPF 257
>gb|CB859283.1|CB859283 HI09P17w HI Hordeum vulgare subsp. vulgare cDNA clone HI09P17
3-PRIME, mRNA sequence
Length = 560
Score = 107 bits (229), Expect(2) = 1e-048
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +2 / +1
Query: 176 GCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVESAWGIGVRMR 322
GCFLTHCGWNST E++ +GVPMVAMP+ ADQPTTAKYVESAWG GVR+R
Sbjct: 142 GCFLTHCGWNSTTEALVAGVPMVAMPRSADQPTTAKYVESAWGTGVRIR 288
Score = 105 bits (223), Expect(2) = 1e-048
Identities = 45/62 (72%), Positives = 51/62 (82%)
Frame = +2 / +1
Query: 323 KGSLVRKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKYLPK 502
KG + R+EVERCIR+VM GE K Y +NA +WM AKEAMQEGGSSDKNIAEFAAKYL +
Sbjct: 298 KGLVRREEVERCIRKVMDGEEKVEYRKNATKWMRMAKEAMQEGGSSDKNIAEFAAKYLSR 477
Query: 503 *I 508
*I
Sbjct: 478 *I 483
Score = 94.5 bits (200), Expect(2) = 6e-041
Identities = 42/62 (67%), Positives = 47/62 (75%)
Frame = -3 / -1
Query: 507 IYFGKYLAANSAMFLSELPPSCMASLALCIQRAAFLPYTCFLSPPITSLMHLSTSFLTKE 328
I+ KYLAANSA+FLSELPPSC+ASLA+ I AFL Y+ F SP IT LMHLSTS L
Sbjct: 482 IHLDKYLAANSAIFLSELPPSCIASLAILIHFVAFLRYSTFSSPSITFLMHLSTSSLLTN 303
Query: 327 PF 322
PF
Sbjct: 302 PF 297
Score = 92.7 bits (196), Expect(2) = 6e-041
Identities = 37/49 (75%), Positives = 41/49 (83%)
Frame = -3 / -1
Query: 321 RMRTPIPHALSTYLAVVGWSAHWGIATIGTPLAMDSIVEFHPQCVRKQP 175
R+RTP+PHALSTY AVVGWSA GIATIGTP S+VEFHPQ V+KQP
Sbjct: 287 RIRTPVPHALSTYFAVVGWSADRGIATIGTPATSASVVEFHPQ*VKKQP 141
>gb|BI947779.1|BI947779 HVSMEl0006O13f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006O13f, mRNA sequence
Length = 1003
Score = 127 bits (271), Expect(3) = 6e-048
Identities = 45/57 (78%), Positives = 53/57 (92%)
Frame = +2 / +1
Query: 155 VLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVESAWGIGVRMRK 325
VL+HKATGCFLTHCGWNST E+I +GVP++AMPQW DQPTTAKY+ESAWGIGVR+ +
Sbjct: 1 VLSHKATGCFLTHCGWNSTTEAIVTGVPLLAMPQWTDQPTTAKYIESAWGIGVRVHR 171
Score = 84.5 bits (178), Expect(3) = 2e-032
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = -3 / -3
Query: 315 RTPIPHALSTYLAVVGWSAHWGIATIGTPLAMDSIVEFHPQCVRKQPVAL 166
RTPIPHALS Y AVVG S H GIA GTP+ + S+VEFHPQ V+KQPVAL
Sbjct: 161 RTPIPHALSMYFAVVG*SVH*GIAKSGTPVTIASVVEFHPQ*VKKQPVAL 12
Score = 59.7 bits (124), Expect(3) = 6e-048
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +2 / +2
Query: 416 WMHKAKEAMQEGGSSDKNIAEFAAKYLP 499
WM KAKEAM +GGSSDKNIAEFAAKY P
Sbjct: 272 WMTKAKEAMHKGGSSDKNIAEFAAKYSP 355
Score = 52.4 bits (108), Expect(3) = 2e-032
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = -3 / -2
Query: 549 IAQKTHYPRRT*SEIYFGKYLAANSAMFLSELPPSCMASLALCI 418
I++ + ++ ++ G+YLAANSA+FLSELPP C+ASLA I
Sbjct: 405 ISEYNPHVKKIEHQLVVGEYLAANSAIFLSELPPLCIASLAFVI 274
Score = 42.3 bits (86), Expect(3) = 6e-048
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +2 / +1
Query: 314 RMRKGSLVRKEVERCIREVMGGERKHVYGRNA 409
R ++G + ++EVERCI+EV+ GERK Y +N+
Sbjct: 169 RDKEGIVRKEEVERCIKEVLDGERKQEYMKNS 264
Score = 40.0 bits (81), Expect(3) = 2e-032
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -3 / -3
Query: 405 FLPYTCFLSPPITSLMHLSTS 343
F Y+CFLSP TSLMHLSTS
Sbjct: 260 FFMYSCFLSPSKTSLMHLSTS 198
>gb|BQ464840.1|BQ464840 HU01M16T HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
5-PRIME, mRNA sequence
Length = 571
Score = 100 bits (214), Expect(4) = 1e-031
Identities = 34/57 (59%), Positives = 47/57 (82%)
Frame = +2 / +1
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYV 289
RG++V +C Q+ VL+H A GCF+THCGWNST+E++A G P+VA+PQW+DQ T A+ V
Sbjct: 118 RGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQDTNARLV 288
Score = 35.4 bits (71), Expect(4) = 1e-031
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2 / +1
Query: 5 QLDELGNGLCDSGKPFVWVLRSNEAE 82
Q DEL GL SG+ ++WVLR+N +
Sbjct: 13 QKDELKRGLAASGRAYLWVLRNNNRD 90
Score = 30.4 bits (60), Expect(4) = 1e-031
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2 / +1
Query: 374 GGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKY 493
G E ++A W K ++A+ +GGSS +N+ F ++
Sbjct: 382 GTEEGAAIRASSAAWKAKLRQAIADGGSSGRNLRIFLNQF 501
Score = 24.4 bits (47), Expect(4) = 1e-031
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2 / +1
Query: 332 LVRKEVERCIREVMGG 379
LV +E+ RC+ +MGG
Sbjct: 337 LVAEELARCLEMIMGG 384
>gb|BQ663266.1|BQ663266 HU01M16w HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
3-PRIME, mRNA sequence
Length = 570
Score = 100 bits (214), Expect(4) = 1e-031
Identities = 34/57 (59%), Positives = 47/57 (82%)
Frame = +2 / -1
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYV 289
RG++V +C Q+ VL+H A GCF+THCGWNST+E++A G P+VA+PQW+DQ T A+ V
Sbjct: 453 RGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQDTNARLV 283
Score = 35.4 bits (71), Expect(4) = 1e-031
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2 / -1
Query: 5 QLDELGNGLCDSGKPFVWVLRSNEAE 82
Q DEL GL SG+ ++WVLR+N +
Sbjct: 558 QKDELKRGLAASGRAYLWVLRNNNRD 481
Score = 30.4 bits (60), Expect(4) = 1e-031
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2 / -1
Query: 374 GGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKY 493
G E ++A W K ++A+ +GGSS +N+ F ++
Sbjct: 189 GTEEGAAIRASSAAWKAKLRQAIADGGSSGRNLRIFLNQF 70
Score = 24.4 bits (47), Expect(4) = 1e-031
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2 / -1
Query: 332 LVRKEVERCIREVMGG 379
LV +E+ RC+ +MGG
Sbjct: 234 LVAEELARCLEMIMGG 187
>gb|CA015437.1|CA015437 HT14F01r HT Hordeum vulgare subsp. vulgare cDNA clone HT14F01
5-PRIME, mRNA sequence
Length = 510
Score = 100 bits (214), Expect(4) = 5e-030
Identities = 34/57 (59%), Positives = 47/57 (82%)
Frame = +2 / +1
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYV 289
RG++V +C Q+ VL+H A GCF+THCGWNST+E++A G P+VA+PQW+DQ T A+ V
Sbjct: 157 RGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQDTNARLV 327
Score = 35.4 bits (71), Expect(4) = 5e-030
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2 / +1
Query: 5 QLDELGNGLCDSGKPFVWVLRSNEAE 82
Q DEL GL SG+ ++WVLR+N +
Sbjct: 52 QKDELKRGLAASGRAYLWVLRNNNRD 129
Score = 24.9 bits (48), Expect(4) = 5e-030
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2 / +1
Query: 374 GGERKHVYGRNAARWMHKAKEAMQEGGSS 460
G E ++A W K ++A+ +GGSS
Sbjct: 421 GTEEGAAIRASSAAWKAKLRQAIADGGSS 507
Score = 24.4 bits (47), Expect(4) = 5e-030
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2 / +1
Query: 332 LVRKEVERCIREVMGG 379
LV +E+ RC+ +MGG
Sbjct: 376 LVAEELARCLEMIMGG 423
>gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3k12 3', mRNA sequence
Length = 651
Score = 89.5 bits (189), Expect(3) = 6e-024
Identities = 31/71 (43%), Positives = 47/71 (66%)
Frame = +2 / -1
Query: 107 RCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKY 286
R + +GL+V + PQ VL+H + CF++HCGWNST+E + GVP + P +ADQ Y
Sbjct: 372 RVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQFCNQSY 193
Query: 287 VESAWGIGVRM 319
+ + WG GV++
Sbjct: 192 ICNVWGTGVKI 160
Score = 29.9 bits (59), Expect(3) = 6e-024
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2 / -1
Query: 14 ELGNGLCDSGKPFVWVLRSN 73
EL +GL +G+PF+W +R+N
Sbjct: 477 ELADGLELTGRPFLWTVRTN 418
Score = 28.1 bits (55), Expect(3) = 6e-024
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2 / -1
Query: 407 AARWMHKAKEAMQEGGSSDKNI 472
AA W A ++ EGGSSD+N+
Sbjct: 72 AAIWKDAACTSISEGGSSDQNL 7
>gb|BF255286.3|BF255286 HVSMEf0006H07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006H07f, mRNA sequence
Length = 505
Score = 100 bits (214), Expect(3) = 7e-024
Identities = 34/57 (59%), Positives = 47/57 (82%)
Frame = +2 / +2
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYV 289
RG++V +C Q+ VL+H A GCF+THCGWNST+E++A G P+VA+PQW+DQ T A+ V
Sbjct: 38 RGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQDTNARLV 208
Score = 25.8 bits (50), Expect(3) = 7e-024
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +2 / +2
Query: 404 NAARWMHKAKEAMQEGGSSDKNI 472
++A W K ++A+ + GSS +N+
Sbjct: 332 SSAAWKAKLRQAIADSGSSGRNL 400
Score = 21.7 bits (41), Expect(3) = 7e-024
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2 / +2
Query: 332 LVRKEVERCIREVMG 376
LV +E+ RC+ +MG
Sbjct: 257 LVAEELARCLEMIMG 301
>gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16h10 3', mRNA sequence
Length = 669
Score = 89.5 bits (189), Expect(3) = 9e-024
Identities = 31/71 (43%), Positives = 47/71 (66%)
Frame = +2 / -3
Query: 107 RCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKY 286
R + +GL+V + PQ VL+H + CF++HCGWNST+E + GVP + P +ADQ Y
Sbjct: 385 RVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQFCNQSY 206
Query: 287 VESAWGIGVRM 319
+ + WG GV++
Sbjct: 205 ICNVWGTGVKI 173
Score = 29.9 bits (59), Expect(3) = 9e-024
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2 / -3
Query: 14 ELGNGLCDSGKPFVWVLRSN 73
EL +GL +G+PF+W +R+N
Sbjct: 490 ELADGLELTGRPFLWTVRTN 431
Score = 27.6 bits (54), Expect(3) = 9e-024
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2 / -3
Query: 407 AARWMHKAKEAMQEGGSSDKNIAE 478
AA W A + EGGSSD+N+ +
Sbjct: 85 AAIWKDAACTSXXEGGSSDQNLXQ 14
>gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
5-PRIME, mRNA sequence
Length = 647
Score = 94.5 bits (200), Expect(3) = 1e-022
Identities = 37/86 (43%), Positives = 52/86 (60%)
Frame = +2 / +3
Query: 62 LRSNEAEKLSRQLGGRCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPM 241
L +A L + RGL+ +CPQ EVL H A G FLTH GWNS +ES+ GVP+
Sbjct: 51 LVKGDAAVLPEEFLAETAGRGLMASWCPQQEVLNHPAVGAFLTHSGWNSALESLFGGVPV 230
Query: 242 VAMPQWADQPTTAKYVESAWGIGVRM 319
++ P +ADQ T +Y + WG+G+ +
Sbjct: 231 ISWPFFADQQTNCRYQCNEWGVGMEI 308
Score = 29.0 bits (57), Expect(3) = 1e-022
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +2 / +1
Query: 362 REVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKYL 496
R M GE+ + A W A +A GGSS N E L
Sbjct: 349 RXSMEGEKGKSMRKRAVEWKESAVKAAMPGGSSHINFHELVRDVL 483
Score = 21.7 bits (41), Expect(3) = 1e-022
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +2 / +3
Query: 38 SGKPFVWVLR 67
SGK F+W++R
Sbjct: 15 SGKQFMWIVR 44
>gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023F14f, mRNA sequence
Length = 816
Score = 94.1 bits (199), Expect(2) = 2e-022
Identities = 33/70 (47%), Positives = 48/70 (68%)
Frame = +2 / +3
Query: 113 KERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVE 292
K + +V + PQ +VL H+A GCFLTH GWNST+ES+A GVP V P + DQ ++++
Sbjct: 189 KSKARVVEWAPQRDVLRHRAVGCFLTHAGWNSTLESVAEGVPTVCWPFFVDQQINSRFMG 368
Query: 293 SAWGIGVRMR 322
+ WG G+ M+
Sbjct: 369 AVWGSGLDMK 398
Score = 30.9 bits (61), Expect(2) = 2e-022
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2 / +3
Query: 2 EQLDELGNGLCDSGKPFVWVLR 67
E+ E +GL +G PF+WVLR
Sbjct: 63 EEFTEFLSGLVSAGHPFLWVLR 128
>gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05K10
3-PRIME, mRNA sequence
Length = 622
Score = 85.4 bits (180), Expect(2) = 7e-022
Identities = 30/67 (44%), Positives = 45/67 (67%)
Frame = +2 / -2
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVESA 298
RG++ +CPQ VL H+A G FLTH GWNST++S+ GVP + P +A+Q T ++Y
Sbjct: 453 RGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCWPFFAEQQTNSRYSCVE 274
Query: 299 WGIGVRM 319
WG+ + +
Sbjct: 273 WGVAMEI 253
Score = 37.7 bits (76), Expect(2) = 7e-022
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2 / -2
Query: 338 RKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKYL 496
R+ VE IRE M GE+ R A W A + GG S N+ A L
Sbjct: 237 RETVEAKIREAMSGEKGKEMRRRAEEWRETGVRATRPGGRSRANLERLVADSL 79
>gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006N01f, mRNA sequence
Length = 584
Score = 85.4 bits (180), Expect(2) = 7e-022
Identities = 30/67 (44%), Positives = 45/67 (67%)
Frame = +2 / +1
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVESA 298
RG++ +CPQ VL H+A G FLTH GWNST++S+ GVP + P +A+Q T ++Y
Sbjct: 133 RGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCWPFFAEQQTNSRYSCVE 312
Query: 299 WGIGVRM 319
WG+ + +
Sbjct: 313 WGVAMEI 333
Score = 37.7 bits (76), Expect(2) = 7e-022
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2 / +1
Query: 338 RKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAA 487
R+ VE IRE M GE+ R A W A + GG S N+ A
Sbjct: 349 RETVEAKIREAMSGEKGKEMRRRAEEWRETGVRATRPGGPSRANLGRLVA 498
>gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_B19 5', mRNA sequence
Length = 418
Score = 98.2 bits (208), Expect(2) = 5e-021
Identities = 36/88 (40%), Positives = 57/88 (64%)
Frame = +2 / +3
Query: 59 VLRSNEAEKLSRQLGGRCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVP 238
++ ++++ L +G K + +V + PQ +VL H+A GCFLTH GWNST+E IA GVP
Sbjct: 48 MIGASQSAVLQEAVGAAGKGKARVVGWAPQRDVLRHRAVGCFLTHAGWNSTLEGIAEGVP 227
Query: 239 MVAMPQWADQPTTAKYVESAWGIGVRMR 322
+V P + DQ +++V + WG G+ M+
Sbjct: 228 LVCWPFFLDQQINSRFVGAVWGAGLDMK 311
Score = 22.1 bits (42), Expect(2) = 5e-021
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2 / +3
Query: 29 LCDSGKPFVWVLR 67
L +SG F+WVLR
Sbjct: 3 LVNSGYTFLWVLR 41
>gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags5b03, mRNA sequence
Length = 671
Score = 88.6 bits (187), Expect(2) = 9e-021
Identities = 34/87 (39%), Positives = 53/87 (60%)
Frame = +2 / +1
Query: 59 VLRSNEAEKLSRQLGGRCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVP 238
+++ ++ L + + R ++ +CPQ +VL +A G FLTH GWNS++E I GVP
Sbjct: 250 LVKGDDEAALPPEFSTATEGRSMLSTWCPQEKVLEQEAVGVFLTHSGWNSSLEGICGGVP 429
Query: 239 MVAMPQWADQPTTAKYVESAWGIGVRM 319
MV P +ADQ T +Y + WGIG+ +
Sbjct: 430 MVCWPFFADQQTNCRYKCTEWGIGMEI 510
Score = 30.9 bits (61), Expect(2) = 9e-021
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2 / +1
Query: 338 RKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNI 472
R EVE IRE M G++ R A + + GG S +N+
Sbjct: 526 RTEVEALIREAMEGDKGREMRRRVLELWESAVASARPGGRSMRNV 660
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 318,350,737
Number of Sequences: 312970
Number of extensions: 5688472
Number of successful extensions: 104706
Number of sequences better than 1.0e-020: 22
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6023172678
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)