TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2943885.2.1
         (581 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF622661.2|BF622661  HVSMEa0007K11f Hordeum vulgare seedl...   199   2e-064
gb|BF621553.2|BF621553  HVSMEa0011G05f Hordeum vulgare seedl...   150   5e-059
gb|CB859283.1|CB859283  HI09P17w HI Hordeum vulgare subsp. v...   107   1e-048
gb|BI947779.1|BI947779  HVSMEl0006O13f Hordeum vulgare spike...   127   6e-048
gb|BQ464840.1|BQ464840  HU01M16T HU Hordeum vulgare subsp. v...   100   1e-031
gb|BQ663266.1|BQ663266  HU01M16w HU Hordeum vulgare subsp. v...   100   1e-031
gb|CA015437.1|CA015437  HT14F01r HT Hordeum vulgare subsp. v...   100   5e-030
gb|AV927784.1|AV927784  AV927784 K. Sato unpublished cDNA li...    90   6e-024
gb|BF255286.3|BF255286  HVSMEf0006H07f Hordeum vulgare seedl...   100   7e-024
gb|AV929760.1|AV929760  AV929760 K. Sato unpublished cDNA li...    90   9e-024
gb|CA018416.1|CA018416  HV08I24r HV Hordeum vulgare subsp. v...    95   1e-022
gb|BF260942.2|BF260942  HVSMEf0023F14f Hordeum vulgare seedl...    94   2e-022
gb|CB880150.1|CB880150  HM05K10w HM Hordeum vulgare subsp. v...    85   7e-022
gb|BF255421.3|BF255421  HVSMEf0006N01f Hordeum vulgare seedl...    85   7e-022
gb|BQ768447.1|BQ768447  EBro08_SQ011_B19_R root, 3 week, dro...    98   5e-021
gb|AV833284.1|AV833284  AV833284 K. Sato unpublished cDNA li...    89   9e-021
>gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedling shoot EST library
           HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
           cDNA clone HVSMEa0007K11f, mRNA sequence
          Length = 697

 Score =  199 bits (429), Expect(2) = 2e-064
 Identities = 74/110 (67%), Positives = 91/110 (82%)
 Frame = +2 / +2

                                                                       
Query: 5   QLDELGNGLCDSGKPFVWVLRSNEAEKLSRQLGGRCKERGLIVPFCPQLEVLAHKATGCF 184
           QL+ELGNGLC+S KPF+WV+RSNE  KLS +L  +C + GLI  +CPQLEVLAH+A GCF
Sbjct: 113 QLEELGNGLCNSSKPFLWVVRSNEEHKLSEELKEKCGKIGLIGSWCPQLEVLAHRAIGCF 292

                                                             
Query: 185 LTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVESAWGIGVRMRKGSL 334
           +THCGWNST+E++ +GVP V +P WADQPT AKYVESAWG+GVR RK  +
Sbjct: 293 ITHCGWNSTLEALVNGVPFVGIPHWADQPTIAKYVESAWGMGVRARKNKI 442

 Score =  132 bits (282), Expect(2) = 3e-042
 Identities = 58/94 (61%), Positives = 65/94 (69%)
 Frame = -3 / -2

                                                                       
Query: 324 FRMRTPIPHALSTYLAVVGWSAHWGIATIGTPLAMDSIVEFHPQCVRKQPVALCASTSS* 145
           FR RTPIPHALSTY A+VGWSA  GI T GTPL   S VEFHPQ V KQP+ALCA TSS 
Sbjct: 432 FRARTPIPHALSTYFAMVGWSAQCGIPTKGTPLTSASSVEFHPQWVMKQPIALCARTSSW 253

                                             
Query: 144 GQKGTMRPLSLHLPPSCRDSFSASLDLSTQTKGL 43
           G    + P+  H   S  D+  +SLDL+TQ KGL
Sbjct: 252 GHHEPINPIFPHFSLSSSDNLCSSLDLTTQRKGL 151

 Score = 66.6 bits (139), Expect(2) = 2e-064
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +2 / +2

                                                      
Query: 326 GSLVRKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGG 454
           G L ++EV+RC+ EVM GERK  Y +NA  WM K +EAMQEGG
Sbjct: 443 GCLKKEEVDRCLIEVMDGERKDKYKKNAMNWMQKGQEAMQEGG 571

 Score = 59.3 bits (123), Expect(2) = 3e-042
 Identities = 25/43 (58%), Positives = 28/43 (65%)
 Frame = -3 / -2

                                                      
Query: 453 PPSCMASLALCIQRAAFLPYTCFLSPPITSLMHLSTSFLTKEP 325
           PPSC+AS   CIQ  AF  Y  FLSP ITS+ HLSTS   + P
Sbjct: 570 PPSCIASWPFCIQFMAFFLYLSFLSPSITSIRHLSTSSFFRHP 442
>gb|BF621553.2|BF621553 HVSMEa0011G05f Hordeum vulgare seedling shoot EST library
           HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
           cDNA clone HVSMEa0011G05f, mRNA sequence
          Length = 797

 Score =  150 bits (323), Expect(2) = 5e-059
 Identities = 56/81 (69%), Positives = 68/81 (83%)
 Frame = +2 / +3

                                                                       
Query: 83  KLSRQLGGRCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWA 262
           KLS +L  +C + GLIV +CPQLEVLAH+A GCF+THCGWNST+E++ +GVP V +P WA
Sbjct: 9   KLSEELKEKCGKIGLIVSWCPQLEVLAHRAIGCFVTHCGWNSTLEALVNGVPFVGIPHWA 188

                                
Query: 263 DQPTTAKYVESAWGIGVRMRK 325
           DQPT AKYVESAWG+GVR RK
Sbjct: 189 DQPTIAKYVESAWGMGVRARK 251

 Score =  115 bits (245), Expect(2) = 1e-047
 Identities = 50/80 (62%), Positives = 55/80 (68%)
 Frame = -3 / -2

                                                                       
Query: 324 FRMRTPIPHALSTYLAVVGWSAHWGIATIGTPLAMDSIVEFHPQCVRKQPVALCASTSS* 145
           FR RTPIPHALSTY A+VGWSA  GI T GTPL   S VEFHPQ V KQP+ALCA TSS 
Sbjct: 250 FRARTPIPHALSTYFAMVGWSAQCGIPTKGTPLTSASSVEFHPQWVTKQPIALCARTSSW 71

                               
Query: 144 GQKGTMRPLSLHLPPSCRDS 85
           G   T+ P+  H   S  D+
Sbjct: 70  GHHETINPIFPHFSLSSSDN 11

 Score = 96.8 bits (205), Expect(2) = 5e-059
 Identities = 43/69 (62%), Positives = 50/69 (72%)
 Frame = +2 / +3

                                                                       
Query: 320 RKGSLVRKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKYLP 499
           + G L ++EVERCI EVM GERK  Y +NA  WM KAKEAMQEGGSSDK++ EFA KY  
Sbjct: 255 KNGCLKKEEVERCIIEVMDGERKDEYKKNAMNWMQKAKEAMQEGGSSDKHVTEFATKYSA 434

                    
Query: 500 K*ISDYVLL 526
            *  + VLL
Sbjct: 435 I*NLNNVLL 461

 Score = 94.5 bits (200), Expect(2) = 1e-047
 Identities = 41/70 (58%), Positives = 48/70 (68%)
 Frame = -3 / -2

                                                                       
Query: 531 YPRRT*SEIYFGKYLAANSAMFLSELPPSCMASLALCIQRAAFLPYTCFLSPPITSLMHL 352
           Y  +T  + Y  +YL ANS   LSELPPSC+ASLA CIQ  AF  Y+ FLSP ITS+MHL
Sbjct: 466 YLSKTLFKFYIAEYLVANSVTCLSELPPSCIASLAFCIQFMAFFLYSSFLSPSITSIMHL 287

                     
Query: 351 STSFLTKEPF 322
           STS   + PF
Sbjct: 286 STSSFFRHPF 257
>gb|CB859283.1|CB859283 HI09P17w HI Hordeum vulgare subsp. vulgare cDNA clone HI09P17
           3-PRIME, mRNA sequence
          Length = 560

 Score =  107 bits (229), Expect(2) = 1e-048
 Identities = 40/49 (81%), Positives = 45/49 (91%)
 Frame = +2 / +1

                                                            
Query: 176 GCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVESAWGIGVRMR 322
           GCFLTHCGWNST E++ +GVPMVAMP+ ADQPTTAKYVESAWG GVR+R
Sbjct: 142 GCFLTHCGWNSTTEALVAGVPMVAMPRSADQPTTAKYVESAWGTGVRIR 288

 Score =  105 bits (223), Expect(2) = 1e-048
 Identities = 45/62 (72%), Positives = 51/62 (82%)
 Frame = +2 / +1

                                                                       
Query: 323 KGSLVRKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKYLPK 502
           KG + R+EVERCIR+VM GE K  Y +NA +WM  AKEAMQEGGSSDKNIAEFAAKYL +
Sbjct: 298 KGLVRREEVERCIRKVMDGEEKVEYRKNATKWMRMAKEAMQEGGSSDKNIAEFAAKYLSR 477

             
Query: 503 *I 508
           *I
Sbjct: 478 *I 483

 Score = 94.5 bits (200), Expect(2) = 6e-041
 Identities = 42/62 (67%), Positives = 47/62 (75%)
 Frame = -3 / -1

                                                                       
Query: 507 IYFGKYLAANSAMFLSELPPSCMASLALCIQRAAFLPYTCFLSPPITSLMHLSTSFLTKE 328
           I+  KYLAANSA+FLSELPPSC+ASLA+ I   AFL Y+ F SP IT LMHLSTS L   
Sbjct: 482 IHLDKYLAANSAIFLSELPPSCIASLAILIHFVAFLRYSTFSSPSITFLMHLSTSSLLTN 303

             
Query: 327 PF 322
           PF
Sbjct: 302 PF 297

 Score = 92.7 bits (196), Expect(2) = 6e-041
 Identities = 37/49 (75%), Positives = 41/49 (83%)
 Frame = -3 / -1

                                                            
Query: 321 RMRTPIPHALSTYLAVVGWSAHWGIATIGTPLAMDSIVEFHPQCVRKQP 175
           R+RTP+PHALSTY AVVGWSA  GIATIGTP    S+VEFHPQ V+KQP
Sbjct: 287 RIRTPVPHALSTYFAVVGWSADRGIATIGTPATSASVVEFHPQ*VKKQP 141
>gb|BI947779.1|BI947779 HVSMEl0006O13f Hordeum vulgare spike EST library HVcDNA0012
           (Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
           clone HVSMEl0006O13f, mRNA sequence
          Length = 1003

 Score =  127 bits (271), Expect(3) = 6e-048
 Identities = 45/57 (78%), Positives = 53/57 (92%)
 Frame = +2 / +1

                                                                    
Query: 155 VLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVESAWGIGVRMRK 325
           VL+HKATGCFLTHCGWNST E+I +GVP++AMPQW DQPTTAKY+ESAWGIGVR+ +
Sbjct: 1   VLSHKATGCFLTHCGWNSTTEAIVTGVPLLAMPQWTDQPTTAKYIESAWGIGVRVHR 171

 Score = 84.5 bits (178), Expect(3) = 2e-032
 Identities = 36/50 (72%), Positives = 40/50 (80%)
 Frame = -3 / -3

                                                             
Query: 315 RTPIPHALSTYLAVVGWSAHWGIATIGTPLAMDSIVEFHPQCVRKQPVAL 166
           RTPIPHALS Y AVVG S H GIA  GTP+ + S+VEFHPQ V+KQPVAL
Sbjct: 161 RTPIPHALSMYFAVVG*SVH*GIAKSGTPVTIASVVEFHPQ*VKKQPVAL 12

 Score = 59.7 bits (124), Expect(3) = 6e-048
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = +2 / +2

                                       
Query: 416 WMHKAKEAMQEGGSSDKNIAEFAAKYLP 499
           WM KAKEAM +GGSSDKNIAEFAAKY P
Sbjct: 272 WMTKAKEAMHKGGSSDKNIAEFAAKYSP 355

 Score = 52.4 bits (108), Expect(3) = 2e-032
 Identities = 22/44 (50%), Positives = 32/44 (72%)
 Frame = -3 / -2

                                                       
Query: 549 IAQKTHYPRRT*SEIYFGKYLAANSAMFLSELPPSCMASLALCI 418
           I++   + ++   ++  G+YLAANSA+FLSELPP C+ASLA  I
Sbjct: 405 ISEYNPHVKKIEHQLVVGEYLAANSAIFLSELPPLCIASLAFVI 274

 Score = 42.3 bits (86), Expect(3) = 6e-048
 Identities = 16/32 (50%), Positives = 25/32 (78%)
 Frame = +2 / +1

                                           
Query: 314 RMRKGSLVRKEVERCIREVMGGERKHVYGRNA 409
           R ++G + ++EVERCI+EV+ GERK  Y +N+
Sbjct: 169 RDKEGIVRKEEVERCIKEVLDGERKQEYMKNS 264

 Score = 40.0 bits (81), Expect(3) = 2e-032
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -3 / -3

                                
Query: 405 FLPYTCFLSPPITSLMHLSTS 343
           F  Y+CFLSP  TSLMHLSTS
Sbjct: 260 FFMYSCFLSPSKTSLMHLSTS 198
>gb|BQ464840.1|BQ464840 HU01M16T HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
           5-PRIME, mRNA sequence
          Length = 571

 Score =  100 bits (214), Expect(4) = 1e-031
 Identities = 34/57 (59%), Positives = 47/57 (82%)
 Frame = +2 / +1

                                                                    
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYV 289
           RG++V +C Q+ VL+H A GCF+THCGWNST+E++A G P+VA+PQW+DQ T A+ V
Sbjct: 118 RGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQDTNARLV 288

 Score = 35.4 bits (71), Expect(4) = 1e-031
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2 / +1

                                    
Query: 5  QLDELGNGLCDSGKPFVWVLRSNEAE 82
          Q DEL  GL  SG+ ++WVLR+N  +
Sbjct: 13 QKDELKRGLAASGRAYLWVLRNNNRD 90

 Score = 30.4 bits (60), Expect(4) = 1e-031
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2 / +1

                                                   
Query: 374 GGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKY 493
           G E       ++A W  K ++A+ +GGSS +N+  F  ++
Sbjct: 382 GTEEGAAIRASSAAWKAKLRQAIADGGSSGRNLRIFLNQF 501

 Score = 24.4 bits (47), Expect(4) = 1e-031
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2 / +1

                           
Query: 332 LVRKEVERCIREVMGG 379
           LV +E+ RC+  +MGG
Sbjct: 337 LVAEELARCLEMIMGG 384
>gb|BQ663266.1|BQ663266 HU01M16w HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
           3-PRIME, mRNA sequence
          Length = 570

 Score =  100 bits (214), Expect(4) = 1e-031
 Identities = 34/57 (59%), Positives = 47/57 (82%)
 Frame = +2 / -1

                                                                    
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYV 289
           RG++V +C Q+ VL+H A GCF+THCGWNST+E++A G P+VA+PQW+DQ T A+ V
Sbjct: 453 RGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQDTNARLV 283

 Score = 35.4 bits (71), Expect(4) = 1e-031
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2 / -1

                                     
Query: 5   QLDELGNGLCDSGKPFVWVLRSNEAE 82
           Q DEL  GL  SG+ ++WVLR+N  +
Sbjct: 558 QKDELKRGLAASGRAYLWVLRNNNRD 481

 Score = 30.4 bits (60), Expect(4) = 1e-031
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2 / -1

                                                   
Query: 374 GGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKY 493
           G E       ++A W  K ++A+ +GGSS +N+  F  ++
Sbjct: 189 GTEEGAAIRASSAAWKAKLRQAIADGGSSGRNLRIFLNQF 70

 Score = 24.4 bits (47), Expect(4) = 1e-031
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2 / -1

                           
Query: 332 LVRKEVERCIREVMGG 379
           LV +E+ RC+  +MGG
Sbjct: 234 LVAEELARCLEMIMGG 187
>gb|CA015437.1|CA015437 HT14F01r HT Hordeum vulgare subsp. vulgare cDNA clone HT14F01
           5-PRIME, mRNA sequence
          Length = 510

 Score =  100 bits (214), Expect(4) = 5e-030
 Identities = 34/57 (59%), Positives = 47/57 (82%)
 Frame = +2 / +1

                                                                    
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYV 289
           RG++V +C Q+ VL+H A GCF+THCGWNST+E++A G P+VA+PQW+DQ T A+ V
Sbjct: 157 RGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQDTNARLV 327

 Score = 35.4 bits (71), Expect(4) = 5e-030
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2 / +1

                                     
Query: 5   QLDELGNGLCDSGKPFVWVLRSNEAE 82
           Q DEL  GL  SG+ ++WVLR+N  +
Sbjct: 52  QKDELKRGLAASGRAYLWVLRNNNRD 129

 Score = 24.9 bits (48), Expect(4) = 5e-030
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2 / +1

                                        
Query: 374 GGERKHVYGRNAARWMHKAKEAMQEGGSS 460
           G E       ++A W  K ++A+ +GGSS
Sbjct: 421 GTEEGAAIRASSAAWKAKLRQAIADGGSS 507

 Score = 24.4 bits (47), Expect(4) = 5e-030
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2 / +1

                           
Query: 332 LVRKEVERCIREVMGG 379
           LV +E+ RC+  +MGG
Sbjct: 376 LVAEELARCLEMIMGG 423
>gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd3k12 3', mRNA sequence
          Length = 651

 Score = 89.5 bits (189), Expect(3) = 6e-024
 Identities = 31/71 (43%), Positives = 47/71 (66%)
 Frame = +2 / -1

                                                                       
Query: 107 RCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKY 286
           R + +GL+V + PQ  VL+H +  CF++HCGWNST+E +  GVP +  P +ADQ     Y
Sbjct: 372 RVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQFCNQSY 193

                      
Query: 287 VESAWGIGVRM 319
           + + WG GV++
Sbjct: 192 ICNVWGTGVKI 160

 Score = 29.9 bits (59), Expect(3) = 6e-024
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2 / -1

                               
Query: 14  ELGNGLCDSGKPFVWVLRSN 73
           EL +GL  +G+PF+W +R+N
Sbjct: 477 ELADGLELTGRPFLWTVRTN 418

 Score = 28.1 bits (55), Expect(3) = 6e-024
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2 / -1

                                 
Query: 407 AARWMHKAKEAMQEGGSSDKNI 472
           AA W   A  ++ EGGSSD+N+
Sbjct: 72  AAIWKDAACTSISEGGSSDQNL 7
>gb|BF255286.3|BF255286 HVSMEf0006H07f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0006H07f, mRNA sequence
          Length = 505

 Score =  100 bits (214), Expect(3) = 7e-024
 Identities = 34/57 (59%), Positives = 47/57 (82%)
 Frame = +2 / +2

                                                                    
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYV 289
           RG++V +C Q+ VL+H A GCF+THCGWNST+E++A G P+VA+PQW+DQ T A+ V
Sbjct: 38  RGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQDTNARLV 208

 Score = 25.8 bits (50), Expect(3) = 7e-024
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2 / +2

                                  
Query: 404 NAARWMHKAKEAMQEGGSSDKNI 472
           ++A W  K ++A+ + GSS +N+
Sbjct: 332 SSAAWKAKLRQAIADSGSSGRNL 400

 Score = 21.7 bits (41), Expect(3) = 7e-024
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2 / +2

                          
Query: 332 LVRKEVERCIREVMG 376
           LV +E+ RC+  +MG
Sbjct: 257 LVAEELARCLEMIMG 301
>gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd16h10 3', mRNA sequence
          Length = 669

 Score = 89.5 bits (189), Expect(3) = 9e-024
 Identities = 31/71 (43%), Positives = 47/71 (66%)
 Frame = +2 / -3

                                                                       
Query: 107 RCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKY 286
           R + +GL+V + PQ  VL+H +  CF++HCGWNST+E +  GVP +  P +ADQ     Y
Sbjct: 385 RVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQFCNQSY 206

                      
Query: 287 VESAWGIGVRM 319
           + + WG GV++
Sbjct: 205 ICNVWGTGVKI 173

 Score = 29.9 bits (59), Expect(3) = 9e-024
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2 / -3

                               
Query: 14  ELGNGLCDSGKPFVWVLRSN 73
           EL +GL  +G+PF+W +R+N
Sbjct: 490 ELADGLELTGRPFLWTVRTN 431

 Score = 27.6 bits (54), Expect(3) = 9e-024
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2 / -3

                                   
Query: 407 AARWMHKAKEAMQEGGSSDKNIAE 478
           AA W   A  +  EGGSSD+N+ +
Sbjct: 85  AAIWKDAACTSXXEGGSSDQNLXQ 14
>gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
           5-PRIME, mRNA sequence
          Length = 647

 Score = 94.5 bits (200), Expect(3) = 1e-022
 Identities = 37/86 (43%), Positives = 52/86 (60%)
 Frame = +2 / +3

                                                                       
Query: 62  LRSNEAEKLSRQLGGRCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPM 241
           L   +A  L  +       RGL+  +CPQ EVL H A G FLTH GWNS +ES+  GVP+
Sbjct: 51  LVKGDAAVLPEEFLAETAGRGLMASWCPQQEVLNHPAVGAFLTHSGWNSALESLFGGVPV 230

                                     
Query: 242 VAMPQWADQPTTAKYVESAWGIGVRM 319
           ++ P +ADQ T  +Y  + WG+G+ +
Sbjct: 231 ISWPFFADQQTNCRYQCNEWGVGMEI 308

 Score = 29.0 bits (57), Expect(3) = 1e-022
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +2 / +1

                                                        
Query: 362 REVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKYL 496
           R  M GE+     + A  W   A +A   GGSS  N  E     L
Sbjct: 349 RXSMEGEKGKSMRKRAVEWKESAVKAAMPGGSSHINFHELVRDVL 483

 Score = 21.7 bits (41), Expect(3) = 1e-022
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2 / +3

                    
Query: 38 SGKPFVWVLR 67
          SGK F+W++R
Sbjct: 15 SGKQFMWIVR 44
>gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0023F14f, mRNA sequence
          Length = 816

 Score = 94.1 bits (199), Expect(2) = 2e-022
 Identities = 33/70 (47%), Positives = 48/70 (68%)
 Frame = +2 / +3

                                                                       
Query: 113 KERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVE 292
           K +  +V + PQ +VL H+A GCFLTH GWNST+ES+A GVP V  P + DQ   ++++ 
Sbjct: 189 KSKARVVEWAPQRDVLRHRAVGCFLTHAGWNSTLESVAEGVPTVCWPFFVDQQINSRFMG 368

                     
Query: 293 SAWGIGVRMR 322
           + WG G+ M+
Sbjct: 369 AVWGSGLDMK 398

 Score = 30.9 bits (61), Expect(2) = 2e-022
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2 / +3

                                 
Query: 2   EQLDELGNGLCDSGKPFVWVLR 67
           E+  E  +GL  +G PF+WVLR
Sbjct: 63  EEFTEFLSGLVSAGHPFLWVLR 128
>gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05K10
           3-PRIME, mRNA sequence
          Length = 622

 Score = 85.4 bits (180), Expect(2) = 7e-022
 Identities = 30/67 (44%), Positives = 45/67 (67%)
 Frame = +2 / -2

                                                                       
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVESA 298
           RG++  +CPQ  VL H+A G FLTH GWNST++S+  GVP +  P +A+Q T ++Y    
Sbjct: 453 RGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCWPFFAEQQTNSRYSCVE 274

                  
Query: 299 WGIGVRM 319
           WG+ + +
Sbjct: 273 WGVAMEI 253

 Score = 37.7 bits (76), Expect(2) = 7e-022
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +2 / -2

                                                                
Query: 338 RKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAAKYL 496
           R+ VE  IRE M GE+     R A  W      A + GG S  N+    A  L
Sbjct: 237 RETVEAKIREAMSGEKGKEMRRRAEEWRETGVRATRPGGRSRANLERLVADSL 79
>gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0006N01f, mRNA sequence
          Length = 584

 Score = 85.4 bits (180), Expect(2) = 7e-022
 Identities = 30/67 (44%), Positives = 45/67 (67%)
 Frame = +2 / +1

                                                                       
Query: 119 RGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVESA 298
           RG++  +CPQ  VL H+A G FLTH GWNST++S+  GVP +  P +A+Q T ++Y    
Sbjct: 133 RGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCWPFFAEQQTNSRYSCVE 312

                  
Query: 299 WGIGVRM 319
           WG+ + +
Sbjct: 313 WGVAMEI 333

 Score = 37.7 bits (76), Expect(2) = 7e-022
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2 / +1

                                                             
Query: 338 RKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEFAA 487
           R+ VE  IRE M GE+     R A  W      A + GG S  N+    A
Sbjct: 349 RETVEAKIREAMSGEKGKEMRRRAEEWRETGVRATRPGGPSRANLGRLVA 498
>gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, drought-stressed, cv Optic, EBro08
           Hordeum vulgare subsp. vulgare cDNA clone
           EBro08_SQ011_B19 5', mRNA sequence
          Length = 418

 Score = 98.2 bits (208), Expect(2) = 5e-021
 Identities = 36/88 (40%), Positives = 57/88 (64%)
 Frame = +2 / +3

                                                                       
Query: 59  VLRSNEAEKLSRQLGGRCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVP 238
           ++ ++++  L   +G   K +  +V + PQ +VL H+A GCFLTH GWNST+E IA GVP
Sbjct: 48  MIGASQSAVLQEAVGAAGKGKARVVGWAPQRDVLRHRAVGCFLTHAGWNSTLEGIAEGVP 227

                                       
Query: 239 MVAMPQWADQPTTAKYVESAWGIGVRMR 322
           +V  P + DQ   +++V + WG G+ M+
Sbjct: 228 LVCWPFFLDQQINSRFVGAVWGAGLDMK 311

 Score = 22.1 bits (42), Expect(2) = 5e-021
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2 / +3

                       
Query: 29 LCDSGKPFVWVLR 67
          L +SG  F+WVLR
Sbjct: 3  LVNSGYTFLWVLR 41
>gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare shoots germination Hordeum vulgare subsp.
           vulgare cDNA clone bags5b03, mRNA sequence
          Length = 671

 Score = 88.6 bits (187), Expect(2) = 9e-021
 Identities = 34/87 (39%), Positives = 53/87 (60%)
 Frame = +2 / +1

                                                                       
Query: 59  VLRSNEAEKLSRQLGGRCKERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVP 238
           +++ ++   L  +     + R ++  +CPQ +VL  +A G FLTH GWNS++E I  GVP
Sbjct: 250 LVKGDDEAALPPEFSTATEGRSMLSTWCPQEKVLEQEAVGVFLTHSGWNSSLEGICGGVP 429

                                      
Query: 239 MVAMPQWADQPTTAKYVESAWGIGVRM 319
           MV  P +ADQ T  +Y  + WGIG+ +
Sbjct: 430 MVCWPFFADQQTNCRYKCTEWGIGMEI 510

 Score = 30.9 bits (61), Expect(2) = 9e-021
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2 / +1

                                                        
Query: 338 RKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNI 472
           R EVE  IRE M G++     R        A  + + GG S +N+
Sbjct: 526 RTEVEALIREAMEGDKGREMRRRVLELWESAVASARPGGRSMRNV 660
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 318,350,737
Number of Sequences: 312970
Number of extensions: 5688472
Number of successful extensions: 104706
Number of sequences better than 1.0e-020: 22
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6023172678
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)