TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943856.2.2
(661 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL503000.1|AL503000 AL503000 Hordeum vulgare Barke roots... 187 5e-047
gb|BF064963.3|BF064963 HV_CEb0022D03f Hordeum vulgare seedl... 187 5e-047
gb|BJ449827.1|BJ449827 BJ449827 K. Sato unpublished cDNA li... 187 5e-047
gb|BJ457246.1|BJ457246 BJ457246 K. Sato unpublished cDNA li... 187 5e-047
gb|BJ467660.1|BJ467660 BJ467660 K. Sato unpublished cDNA li... 187 5e-047
gb|AV930059.1|AV930059 AV930059 K. Sato unpublished cDNA li... 184 3e-046
gb|BF260173.2|BF260173 HVSMEf0021E20f Hordeum vulgare seedl... 176 1e-043
gb|AJ434754.1|AJ434754 AJ434754 S00002 Hordeum vulgare subs... 169 2e-041
gb|BQ760946.1|BQ760946 EBro03_SQ003_O23_R root, 3 week, wat... 169 2e-041
gb|BQ468711.1|BQ468711 HM02B12r HM Hordeum vulgare subsp. v... 166 2e-040
emb|AJ534447.1|HVU534447 Hordeum vulgare mRNA for apoplasti... 166 2e-040
gb|BU973477.1|BU973477 HB25B07r BC Hordeum vulgare subsp. v... 157 5e-038
gb|AV930060.1|AV930060 AV930060 K. Sato unpublished cDNA li... 157 6e-038
gb|BU996678.1|BU996678 HM14G07r HM Hordeum vulgare subsp. v... 144 6e-034
gb|BU996531.1|BU996531 HM13O15r HM Hordeum vulgare subsp. v... 129 1e-029
gb|BQ661204.1|BQ661204 HM02G15u HM Hordeum vulgare subsp. v... 118 3e-026
gb|BE420989.1|BE420989 HWM004.F06 ITEC HWM Barley Leaf Libr... 100 2e-022
gb|BF260867.2|BF260867 HVSMEf0023C11f Hordeum vulgare seedl... 100 2e-022
gb|AV928934.1|AV928934 AV928934 K. Sato unpublished cDNA li... 100 2e-022
gb|BQ468675.1|BQ468675 HM01P04T HM Hordeum vulgare subsp. v... 100 2e-022
gb|CB881780.1|CB881780 HM10N17w HM Hordeum vulgare subsp. v... 100 2e-022
gb|CB875288.1|CB875288 HX07N13w HX Hordeum vulgare subsp. v... 100 2e-022
gb|CA030695.1|CA030695 HX07N13r HX Hordeum vulgare subsp. v... 100 2e-022
gb|BF256656.2|BF256656 HVSMEf0010J22f Hordeum vulgare seedl... 100 2e-022
>gb|AL503000.1|AL503000 AL503000 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G14u 3', mRNA sequence
Length = 595
Score = 187 bits (403), Expect = 5e-047
Identities = 77/88 (87%), Positives = 82/88 (93%)
Frame = +3 / -3
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P LYKPTFAGFVD DISSGKI+LRSLIDRSVVESFGAGGKTCILSRVYPS+A+GKDAHLY
Sbjct: 518 PGLYKPTFAGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLY 339
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA* 320
VFNNGE D+ VS L AWEMKKP+MNGA*
Sbjct: 338 VFNNGETDIKVSQLKAWEMKKPMMNGA* 255
Score = 144 bits (308), Expect = 6e-034
Identities = 64/89 (71%), Positives = 70/89 (78%)
Frame = -1 / +1
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFI GFFIS A+ DT+ S SPLL T*R ASFP AMDGYT +RM V PPAPKLSTT+RS
Sbjct: 259 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 438
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLR 50
IKLL+ I P EMS ST PA VGLYR G+R
Sbjct: 439 IKLLKEIFPDEMSVSTNPANVGLYRPGVR 525
Score = 107 bits (228), Expect = 7e-023
Identities = 47/84 (55%), Positives = 59/84 (70%)
Frame = -3 / +3
Query: 317 GAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDHGPI 138
GA+H LHLP + G+ D+ L +VE+VE+ V PD GRVH +DA L S AEAL+HG +
Sbjct: 258 GAIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 437
Query: 137 DQASKGDLAAGDVGVDEAREGRLV 66
DQAS+GDL +VGVDE E RLV
Sbjct: 438 DQASQGDLPG*NVGVDEPGERRLV 509
>gb|BF064963.3|BF064963 HV_CEb0022D03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022D03f, mRNA sequence
Length = 690
Score = 187 bits (403), Expect = 5e-047
Identities = 77/88 (87%), Positives = 82/88 (93%)
Frame = +3 / +1
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P LYKPTFAGFVD DISSGKI+LRSLIDRSVVESFGAGGKTCILSRVYPS+A+GKDAHLY
Sbjct: 169 PGLYKPTFAGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLY 348
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA* 320
VFNNGE D+ VS L AWEMKKP+MNGA*
Sbjct: 349 VFNNGETDIKVSQLKAWEMKKPMMNGA* 432
Score = 151 bits (324), Expect = 4e-036
Identities = 67/92 (72%), Positives = 73/92 (79%)
Frame = -1 / -2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFI GFFIS A+ DT+ S SPLL T*R ASFP AMDGYT +RM V PPAPKLSTT+RS
Sbjct: 428 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 249
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLL+ I P EMS ST PA VGLYR G+RDDL
Sbjct: 248 IKLLKEIFPDEMSVSTNPANVGLYRPGVRDDL 153
Score = 109 bits (232), Expect = 2e-023
Identities = 49/90 (54%), Positives = 62/90 (68%)
Frame = -3 / -1
Query: 317 GAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDHGPI 138
GA+H LHLP + G+ D+ L +VE+VE+ V PD GRVH +DA L S AEAL+HG +
Sbjct: 429 GAIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 250
Query: 137 DQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DQAS+GDL +VGVDE E RLV R +R
Sbjct: 249 DQASQGDLPG*NVGVDEPGERRLV*ARGER 160
>gb|BJ449827.1|BJ449827 BJ449827 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26o06 5', mRNA sequence
Length = 600
Score = 187 bits (403), Expect = 5e-047
Identities = 77/88 (87%), Positives = 82/88 (93%)
Frame = +3 / +3
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P LYKPTFAGFVD DISSGKI+LRSLIDRSVVESFGAGGKTCILSRVYPS+A+GKDAHLY
Sbjct: 99 PGLYKPTFAGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLY 278
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA* 320
VFNNGE D+ VS L AWEMKKP+MNGA*
Sbjct: 279 VFNNGETDIKVSQLKAWEMKKPMMNGA* 362
Score = 151 bits (324), Expect = 4e-036
Identities = 67/92 (72%), Positives = 73/92 (79%)
Frame = -1 / -3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFI GFFIS A+ DT+ S SPLL T*R ASFP AMDGYT +RM V PPAPKLSTT+RS
Sbjct: 358 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 179
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLL+ I P EMS ST PA VGLYR G+RDDL
Sbjct: 178 IKLLKEIFPDEMSVSTNPANVGLYRPGVRDDL 83
Score = 107 bits (229), Expect = 5e-023
Identities = 48/90 (53%), Positives = 62/90 (68%)
Frame = -3 / -2
Query: 317 GAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDHGPI 138
G++H LHLP + G+ D+ L +VE+VE+ V PD GRVH +DA L S AEAL+HG +
Sbjct: 359 GSIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 180
Query: 137 DQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DQAS+GDL +VGVDE E RLV R +R
Sbjct: 179 DQASQGDLPG*NVGVDEPGERRLV*ARGER 90
>gb|BJ457246.1|BJ457246 BJ457246 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26o06 3', mRNA sequence
Length = 581
Score = 187 bits (403), Expect = 5e-047
Identities = 77/88 (87%), Positives = 82/88 (93%)
Frame = +3 / -2
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P LYKPTFAGFVD DISSGKI+LRSLIDRSVVESFGAGGKTCILSRVYPS+A+GKDAHLY
Sbjct: 484 PGLYKPTFAGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLY 305
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA* 320
VFNNGE D+ VS L AWEMKKP+MNGA*
Sbjct: 304 VFNNGETDIKVSQLKAWEMKKPMMNGA* 221
Score = 151 bits (324), Expect = 4e-036
Identities = 67/92 (72%), Positives = 73/92 (79%)
Frame = -1 / +3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFI GFFIS A+ DT+ S SPLL T*R ASFP AMDGYT +RM V PPAPKLSTT+RS
Sbjct: 225 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 404
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLL+ I P EMS ST PA VGLYR G+RDDL
Sbjct: 405 IKLLKEIFPDEMSVSTNPANVGLYRPGVRDDL 500
Score = 107 bits (229), Expect = 5e-023
Identities = 48/90 (53%), Positives = 62/90 (68%)
Frame = -3 / +2
Query: 317 GAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDHGPI 138
G++H LHLP + G+ D+ L +VE+VE+ V PD GRVH +DA L S AEAL+HG +
Sbjct: 224 GSIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 403
Query: 137 DQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DQAS+GDL +VGVDE E RLV R +R
Sbjct: 404 DQASQGDLPG*NVGVDEPGERRLV*ARGER 493
>gb|BJ467660.1|BJ467660 BJ467660 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29e15 3', mRNA sequence
Length = 602
Score = 187 bits (403), Expect = 5e-047
Identities = 77/88 (87%), Positives = 82/88 (93%)
Frame = +3 / -3
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P LYKPTFAGFVD DISSGKI+LRSLIDRSVVESFGAGGKTCILSRVYPS+A+GKDAHLY
Sbjct: 492 PGLYKPTFAGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLY 313
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA* 320
VFNNGE D+ VS L AWEMKKP+MNGA*
Sbjct: 312 VFNNGETDIKVSQLKAWEMKKPMMNGA* 229
Score = 151 bits (324), Expect = 4e-036
Identities = 67/92 (72%), Positives = 73/92 (79%)
Frame = -1 / +2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFI GFFIS A+ DT+ S SPLL T*R ASFP AMDGYT +RM V PPAPKLSTT+RS
Sbjct: 233 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 412
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLL+ I P EMS ST PA VGLYR G+RDDL
Sbjct: 413 IKLLKEIFPDEMSVSTNPANVGLYRPGVRDDL 508
Score = 109 bits (232), Expect = 2e-023
Identities = 49/90 (54%), Positives = 62/90 (68%)
Frame = -3 / +1
Query: 317 GAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDHGPI 138
GA+H LHLP + G+ D+ L +VE+VE+ V PD GRVH +DA L S AEAL+HG +
Sbjct: 232 GAIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 411
Query: 137 DQASKGDLAAGDVGVDEAREGRLVQIRTKR 48
DQAS+GDL +VGVDE E RLV R +R
Sbjct: 412 DQASQGDLPG*NVGVDEPGERRLV*ARGER 501
>gb|AV930059.1|AV930059 AV930059 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l01 3', mRNA sequence
Length = 502
Score = 184 bits (397), Expect = 3e-046
Identities = 76/86 (88%), Positives = 81/86 (94%)
Frame = +3 / -1
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
LYKPTFAGFVD DISSGKI+LRSLIDRSVVESFGAGGKTCILSRVYPS+A+GKDAHLYVF
Sbjct: 481 LYKPTFAGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLYVF 302
Query: 243 NNGEVDVTVSGLTAWEMKKPLMNGA* 320
NNGE D+ VS L AWEMKKP+MNGA*
Sbjct: 301 NNGETDIKVSQLKAWEMKKPMMNGA* 224
Score = 138 bits (297), Expect = 2e-032
Identities = 62/85 (72%), Positives = 67/85 (78%)
Frame = -1 / +3
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFI GFFIS A+ DT+ S SPLL T*R ASFP AMDGYT +RM V PPAPKLSTT+RS
Sbjct: 228 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 407
Query: 136 IKLLRVILPLEMSASTKPAKVGLYR 62
IKLL+ I P EMS ST PA VGLYR
Sbjct: 408 IKLLKEIFPDEMSVSTNPANVGLYR 482
Score = 104 bits (222), Expect = 5e-022
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = -3 / +2
Query: 314 AVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDHGPID 135
A+H LHLP + G+ D+ L +VE+VE+ V PD GRVH +DA L S AEAL+HG +D
Sbjct: 230 AIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTVD 409
Query: 134 QASKGDLAAGDVGVDEAREGRLV 66
QAS+GDL +VGVDE E RLV
Sbjct: 410 QASQGDLPG*NVGVDEPGERRLV 478
>gb|BF260173.2|BF260173 HVSMEf0021E20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021E20f, mRNA sequence
Length = 790
Score = 176 bits (379), Expect = 1e-043
Identities = 73/88 (82%), Positives = 78/88 (88%)
Frame = +3 / +3
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P LYKPTFAGFVD DISSGKI+LRSLIDRSVVESFGAGGKTCILSRVYP +A+GKDAHLY
Sbjct: 294 PGLYKPTFAGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPXMAIGKDAHLY 473
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLMNGA* 320
VFNNGE D S L AWE+ KP+MNGA*
Sbjct: 474 VFNNGETDFKGSQLKAWEINKPMMNGA* 557
Score = 139 bits (299), Expect = 1e-032
Identities = 63/92 (68%), Positives = 69/92 (75%)
Frame = -1 / -1
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFI G IS A+ D + S SPLL T*R ASFP AM GYT +RM V PPAPKLSTT+RS
Sbjct: 553 APFIMGLLISHALSWDPLKSVSPLLNT*RCASFPIAMXGYTLERMQVFPPAPKLSTTERS 374
Query: 136 IKLLRVILPLEMSASTKPAKVGLYRSGLRDDL 41
IKLL+ I P EMS ST PA VGLYR G+RDDL
Sbjct: 373 IKLLKEIFPDEMSVSTNPANVGLYRPGVRDDL 278
>gb|AJ434754.1|AJ434754 AJ434754 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078A03F1, mRNA sequence
Length = 502
Score = 169 bits (363), Expect = 2e-041
Identities = 70/80 (87%), Positives = 75/80 (93%)
Frame = +3 / +3
Query: 81 AGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVD 260
AGFVD DISSGKI+LRSLIDRSVVESFGAGGKTCILSRVYPS+A+GKDAHLYVFNNGE D
Sbjct: 3 AGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLYVFNNGETD 182
Query: 261 VTVSGLTAWEMKKPLMNGA* 320
+ VS L AWEMKKP+MNGA*
Sbjct: 183 IKVSQLKAWEMKKPMMNGA* 242
Score = 127 bits (271), Expect = 8e-029
Identities = 57/79 (72%), Positives = 62/79 (78%)
Frame = -1 / -1
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFI GFFIS A+ DT+ S SPLL T*R ASFP AMDGYT +RM V PPAPKLSTT+RS
Sbjct: 238 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 59
Query: 136 IKLLRVILPLEMSASTKPA 80
IKLL+ I P EMS ST PA
Sbjct: 58 IKLLKEIFPDEMSVSTNPA 2
Score = 101 bits (215), Expect = 4e-021
Identities = 43/77 (55%), Positives = 55/77 (71%)
Frame = -3 / -3
Query: 317 GAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDHGPI 138
GA+H LHLP + G+ D+ L +VE+VE+ V PD GRVH +DA L S AEAL+HG +
Sbjct: 239 GAIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 60
Query: 137 DQASKGDLAAGDVGVDE 87
DQAS+GDL +VGVDE
Sbjct: 59 DQASQGDLPG*NVGVDE 9
>gb|BQ760946.1|BQ760946 EBro03_SQ003_O23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_O23 5', mRNA sequence
Length = 484
Score = 169 bits (363), Expect = 2e-041
Identities = 70/80 (87%), Positives = 75/80 (93%)
Frame = +3 / +2
Query: 81 AGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVD 260
AGFVD DISSGKI+LRSLIDRSVVESFGAGGKTCILSRVYPS+A+GKDAHLYVFNNGE D
Sbjct: 2 AGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLYVFNNGETD 181
Query: 261 VTVSGLTAWEMKKPLMNGA* 320
+ VS L AWEMKKP+MNGA*
Sbjct: 182 IKVSQLKAWEMKKPMMNGA* 241
Score = 127 bits (271), Expect = 8e-029
Identities = 57/79 (72%), Positives = 62/79 (78%)
Frame = -1 / -2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFI GFFIS A+ DT+ S SPLL T*R ASFP AMDGYT +RM V PPAPKLSTT+RS
Sbjct: 237 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 58
Query: 136 IKLLRVILPLEMSASTKPA 80
IKLL+ I P EMS ST PA
Sbjct: 57 IKLLKEIFPDEMSVSTNPA 1
Score = 101 bits (215), Expect = 4e-021
Identities = 43/77 (55%), Positives = 55/77 (71%)
Frame = -3 / -1
Query: 317 GAVHQRFLHLPGGQAGHRDVHLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDHGPI 138
GA+H LHLP + G+ D+ L +VE+VE+ V PD GRVH +DA L S AEAL+HG +
Sbjct: 238 GAIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 59
Query: 137 DQASKGDLAAGDVGVDE 87
DQAS+GDL +VGVDE
Sbjct: 58 DQASQGDLPG*NVGVDE 8
>gb|BQ468711.1|BQ468711 HM02B12r HM Hordeum vulgare subsp. vulgare cDNA clone HM02B12
5-PRIME, mRNA sequence
Length = 528
Score = 166 bits (356), Expect = 2e-040
Identities = 66/84 (78%), Positives = 78/84 (92%)
Frame = +3 / +3
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P+LYKPTFAGFVD DI+ GKI+LRSLIDRSVVESFGAGG+TCILSRVYP++A+GK+A L+
Sbjct: 75 PNLYKPTFAGFVDTDIAKGKISLRSLIDRSVVESFGAGGRTCILSRVYPTLALGKNARLH 254
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLM 308
VFNNG+VD+ VS LTAWEMKKP +
Sbjct: 255 VFNNGKVDIKVSELTAWEMKKPAL 326
Score = 142 bits (305), Expect = 2e-033
Identities = 65/88 (73%), Positives = 71/88 (80%)
Frame = -1 / -3
Query: 304 SGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRSIKLL 125
+GFFIS AV DT+ ST PLLKT*R A P+A G TR+RM VLPPAPKLSTTDRSI+LL
Sbjct: 322 AGFFISHAVSSDTLMSTLPLLKT*RRAFLPSASVG*TRERMQVLPPAPKLSTTDRSIRLL 143
Query: 124 RVILPLEMSASTKPAKVGLYRSGLRDDL 41
R ILPL MS STKPAKVGLYR G RDD+
Sbjct: 142 RDILPLAMSVSTKPAKVGLYRFGFRDDM 59
>emb|AJ534447.1|HVU534447 Hordeum vulgare mRNA for apoplastic invertase 1 (cwinw1 gene)
Length = 2095
Score = 166 bits (356), Expect = 2e-040
Identities = 66/84 (78%), Positives = 78/84 (92%)
Frame = +3 / +3
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P+LYKPTFAGFVD DI+ GKI+LRSLIDRSVVESFGAGG+TCILSRVYP++A+GK+A L+
Sbjct: 1569 PNLYKPTFAGFVDTDIAKGKISLRSLIDRSVVESFGAGGRTCILSRVYPTLALGKNARLH 1748
Query: 237 VFNNGEVDVTVSGLTAWEMKKPLM 308
VFNNG+VD+ VS LTAWEMKKP +
Sbjct: 1749 VFNNGKVDIKVSELTAWEMKKPAL 1820
Score = 142 bits (305), Expect = 2e-033
Identities = 65/88 (73%), Positives = 71/88 (80%)
Frame = -1 / -1
Query: 304 SGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRSIKLL 125
+GFFIS AV DT+ ST PLLKT*R A P+A G TR+RM VLPPAPKLSTTDRSI+LL
Sbjct: 1816 AGFFISHAVSSDTLMSTLPLLKT*RRAFLPSASVG*TRERMQVLPPAPKLSTTDRSIRLL 1637
Query: 124 RVILPLEMSASTKPAKVGLYRSGLRDDL 41
R ILPL MS STKPAKVGLYR G RDD+
Sbjct: 1636 RDILPLAMSVSTKPAKVGLYRFGFRDDM 1553
>gb|BU973477.1|BU973477 HB25B07r BC Hordeum vulgare subsp. vulgare cDNA clone HB25B07
5-PRIME, mRNA sequence
Length = 477
Score = 157 bits (338), Expect = 5e-038
Identities = 63/79 (79%), Positives = 74/79 (93%)
Frame = +3 / +1
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P+LYKPTFAGFVD DI+ GKI+LRSLIDRSVVESFGAGG+TCILSRVYP++A+GK+A L+
Sbjct: 241 PNLYKPTFAGFVDTDIAKGKISLRSLIDRSVVESFGAGGRTCILSRVYPTLALGKNARLH 420
Query: 237 VFNNGEVDVTVSGLTAWEM 293
VFNNG+VD+ VS LTAWEM
Sbjct: 421 VFNNGKVDIKVSELTAWEM 477
Score = 133 bits (286), Expect = 7e-031
Identities = 62/84 (73%), Positives = 67/84 (79%)
Frame = -1 / -2
Query: 292 ISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRSIKLLRVIL 113
IS AV DT+ ST PLLKT*R A P+A G TR+RM VLPPAPKLSTTDRSI+LLR IL
Sbjct: 476 ISHAVSSDTLMSTLPLLKT*RRAFLPSASVG*TRERMQVLPPAPKLSTTDRSIRLLRDIL 297
Query: 112 PLEMSASTKPAKVGLYRSGLRDDL 41
PL MS STKPAKVGLYR G RDD+
Sbjct: 296 PLAMSVSTKPAKVGLYRFGFRDDM 225
>gb|AV930060.1|AV930060 AV930060 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l02 3', mRNA sequence
Length = 425
Score = 157 bits (337), Expect = 6e-038
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = +3 / -3
Query: 99 DISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGL 278
DISSGKI+LRSLIDRSVVESFGAGGKTCILSRVYPS+A+GKDAHLYVFNNGE D+ VS L
Sbjct: 420 DISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLYVFNNGETDIKVSQL 241
Query: 279 TAWEMKKPLMNGA* 320
AWEMKKP+MNGA*
Sbjct: 240 KAWEMKKPMMNGA* 199
Score = 117 bits (251), Expect = 5e-026
Identities = 53/73 (72%), Positives = 58/73 (79%)
Frame = -1 / +2
Query: 316 APFISGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRS 137
APFI GFFIS A+ DT+ S SPLL T*R ASFP AMDGYT +RM V PPAPKLSTT+RS
Sbjct: 203 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 382
Query: 136 IKLLRVILPLEMS 98
IKLL+ I P EMS
Sbjct: 383 IKLLKEIFPDEMS 421
>gb|BU996678.1|BU996678 HM14G07r HM Hordeum vulgare subsp. vulgare cDNA clone HM14G07
5-PRIME, mRNA sequence
Length = 540
Score = 144 bits (308), Expect = 6e-034
Identities = 58/74 (78%), Positives = 69/74 (93%)
Frame = +3 / +1
Query: 57 PDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLY 236
P+LYKPTFAGFVD DI+ GKI+LRSLIDRSVVESFGAGG+TCILSRVYP++A+GK+A L+
Sbjct: 319 PNLYKPTFAGFVDTDIAKGKISLRSLIDRSVVESFGAGGRTCILSRVYPTLALGKNARLH 498
Query: 237 VFNNGEVDVTVSGL 278
VFNNG+VD+ VS L
Sbjct: 499 VFNNGKVDIKVSEL 540
Score = 127 bits (272), Expect = 6e-029
Identities = 58/77 (75%), Positives = 63/77 (81%)
Frame = -1 / -2
Query: 271 DTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRSIKLLRVILPLEMSAS 92
DT+ ST PLLKT*R A P+A G TR+RM VLPPAPKLSTTDRSI+LLR ILPL MS S
Sbjct: 533 DTLMSTLPLLKT*RRAFLPSASVG*TRERMQVLPPAPKLSTTDRSIRLLRDILPLAMSVS 354
Query: 91 TKPAKVGLYRSGLRDDL 41
TKPAKVGLYR G RDD+
Sbjct: 353 TKPAKVGLYRFGFRDDM 303
>gb|BU996531.1|BU996531 HM13O15r HM Hordeum vulgare subsp. vulgare cDNA clone HM13O15
5-PRIME, mRNA sequence
Length = 481
Score = 129 bits (277), Expect = 1e-029
Identities = 52/66 (78%), Positives = 62/66 (93%)
Frame = +3 / +1
Query: 111 GKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWE 290
GKI+LRSLIDRSVVESFGAGG+TCILSRVYP++A+GK+A L+VFNNG+VD+ VS LTAWE
Sbjct: 10 GKISLRSLIDRSVVESFGAGGRTCILSRVYPTLALGKNARLHVFNNGKVDIKVSELTAWE 189
Query: 291 MKKPLM 308
MKKP +
Sbjct: 190 MKKPAL 207
Score = 100 bits (214), Expect = 6e-021
Identities = 47/65 (72%), Positives = 52/65 (80%)
Frame = -1 / -3
Query: 304 SGFFISQAVRPDTVTSTSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTTDRSIKLL 125
+GFFIS AV DT+ ST PLLKT*R A P+A G TR+RM VLPPAPKLSTTDRSI+LL
Sbjct: 203 AGFFISHAVSSDTLMSTLPLLKT*RRAFLPSASVG*TRERMQVLPPAPKLSTTDRSIRLL 24
Query: 124 RVILP 110
R ILP
Sbjct: 23 RDILP 9
>gb|BQ661204.1|BQ661204 HM02G15u HM Hordeum vulgare subsp. vulgare cDNA clone HM02G15
3-PRIME, mRNA sequence
Length = 493
Score = 118 bits (252), Expect = 3e-026
Identities = 47/66 (71%), Positives = 55/66 (83%)
Frame = +3 / -1
Query: 114 KITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEM 293
KI LR+LID SVVESFGAGGKTCIL+RVYP AVG +AHL++FNNGE D+ ++ L AWEM
Sbjct: 484 KIALRTLIDHSVVESFGAGGKTCILTRVYPKKAVGDNAHLFIFNNGESDIKLTNLRAWEM 305
Query: 294 KKPLMN 311
K P MN
Sbjct: 304 KTPTMN 287
>gb|BE420989.1|BE420989 HWM004.F06 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.F06, mRNA sequence
Length = 1123
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +3 / +1
Query: 90 VDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTV 269
+D + G I+LR+L+D SVVESFG GG+TCI +RVYP V ++HLYVFNNG V V
Sbjct: 142 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 321
Query: 270 SGLTAWEMKKPLMN 311
S L AWEM +N
Sbjct: 322 SSLDAWEMATATVN 363
Score = 24.9 bits (48), Expect(2) = 2e-022
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +1
Query: 63 LYKPTFAGFVDADISS 110
+YKP + FVD DI +
Sbjct: 109 VYKPPYGAFVDMDIEA 156
>gb|BF260867.2|BF260867 HVSMEf0023C11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023C11f, mRNA sequence
Length = 750
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +3 / +2
Query: 90 VDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTV 269
+D + G I+LR+L+D SVVESFG GG+TCI +RVYP V ++HLYVFNNG V V
Sbjct: 443 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 622
Query: 270 SGLTAWEMKKPLMN 311
S L AWEM +N
Sbjct: 623 SSLDAWEMATATVN 664
Score = 24.9 bits (48), Expect(2) = 2e-022
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +2
Query: 63 LYKPTFAGFVDADISS 110
+YKP + FVD DI +
Sbjct: 410 VYKPPYGAFVDMDIEA 457
>gb|AV928934.1|AV928934 AV928934 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20e08 3', mRNA sequence
Length = 716
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +3 / -1
Query: 90 VDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTV 269
+D + G I+LR+L+D SVVESFG GG+TCI +RVYP V ++HLYVFNNG V V
Sbjct: 620 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 441
Query: 270 SGLTAWEMKKPLMN 311
S L AWEM +N
Sbjct: 440 SSLDAWEMATATVN 399
Score = 24.9 bits (48), Expect(2) = 2e-022
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / -1
Query: 63 LYKPTFAGFVDADISS 110
+YKP + FVD DI +
Sbjct: 653 VYKPPYGAFVDMDIEA 606
>gb|BQ468675.1|BQ468675 HM01P04T HM Hordeum vulgare subsp. vulgare cDNA clone HM01P04
5-PRIME, mRNA sequence
Length = 663
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +3 / +3
Query: 90 VDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTV 269
+D + G I+LR+L+D SVVESFG GG+TCI +RVYP V ++HLYVFNNG V V
Sbjct: 375 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 554
Query: 270 SGLTAWEMKKPLMN 311
S L AWEM +N
Sbjct: 555 SSLDAWEMATATVN 596
Score = 24.9 bits (48), Expect(2) = 2e-022
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISS 110
+YKP + FVD DI +
Sbjct: 342 VYKPPYGAFVDMDIEA 389
>gb|CB881780.1|CB881780 HM10N17w HM Hordeum vulgare subsp. vulgare cDNA clone HM10N17
3-PRIME, mRNA sequence
Length = 612
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +3 / -1
Query: 90 VDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTV 269
+D + G I+LR+L+D SVVESFG GG+TCI +RVYP V ++HLYVFNNG V V
Sbjct: 537 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 358
Query: 270 SGLTAWEMKKPLMN 311
S L AWEM +N
Sbjct: 357 SSLDAWEMATATVN 316
Score = 24.9 bits (48), Expect(2) = 2e-022
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / -1
Query: 63 LYKPTFAGFVDADISS 110
+YKP + FVD DI +
Sbjct: 570 VYKPPYGAFVDMDIEA 523
>gb|CB875288.1|CB875288 HX07N13w HX Hordeum vulgare subsp. vulgare cDNA clone HX07N13
3-PRIME, mRNA sequence
Length = 581
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +3 / -1
Query: 90 VDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTV 269
+D + G I+LR+L+D SVVESFG GG+TCI +RVYP V ++HLYVFNNG V V
Sbjct: 533 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 354
Query: 270 SGLTAWEMKKPLMN 311
S L AWEM +N
Sbjct: 353 SSLDAWEMATATVN 312
Score = 24.9 bits (48), Expect(2) = 2e-022
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / -1
Query: 63 LYKPTFAGFVDADISS 110
+YKP + FVD DI +
Sbjct: 566 VYKPPYGAFVDMDIEA 519
>gb|CA030695.1|CA030695 HX07N13r HX Hordeum vulgare subsp. vulgare cDNA clone HX07N13
5-PRIME, mRNA sequence
Length = 475
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +3 / +3
Query: 90 VDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTV 269
+D + G I+LR+L+D SVVESFG GG+TCI +RVYP V ++HLYVFNNG V V
Sbjct: 81 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 260
Query: 270 SGLTAWEMKKPLMN 311
S L AWEM +N
Sbjct: 261 SSLDAWEMATATVN 302
Score = 24.9 bits (48), Expect(2) = 2e-022
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISS 110
+YKP + FVD DI +
Sbjct: 48 VYKPPYGAFVDMDIEA 95
>gb|BF256656.2|BF256656 HVSMEf0010J22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J22f, mRNA sequence
Length = 846
Score = 100 bits (212), Expect(2) = 2e-022
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +3 / +3
Query: 90 VDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTV 269
+D + G I+LR+L+D SVVESFG GG+TCI +RVYP V ++HLYVFNNG V V
Sbjct: 489 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 668
Query: 270 SGLTAWEMKKPLMN 311
S L AWEM +N
Sbjct: 669 SSLYAWEMATATVN 710
Score = 24.9 bits (48), Expect(2) = 2e-022
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISS 110
+YKP + FVD DI +
Sbjct: 456 VYKPPYGAFVDMDIEA 503
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 254,249,027
Number of Sequences: 312970
Number of extensions: 3491552
Number of successful extensions: 49787
Number of sequences better than 1.0e-020: 31
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7126007112
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)