TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2921788.2.1
         (606 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA012582.1|CA012582  HT05N12r HT Hordeum vulgare subsp. v...   116   2e-039
gb|BG299831.1|BG299831  HVSMEa0022A04f Hordeum vulgare seedl...   116   2e-039
gb|BQ768374.1|BQ768374  EBro08_SQ011_D16 _R root, 3 week, dr...   116   1e-025

>gb|CA012582.1|CA012582 HT05N12r HT Hordeum vulgare subsp. vulgare cDNA clone HT05N12
           5-PRIME, mRNA sequence
          Length = 601

 Score =  116 bits (248), Expect(2) = 2e-039
 Identities = 47/60 (78%), Positives = 50/60 (83%)
 Frame = +1 / +1

                                                                       
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGFRWIKAKCSELIHG*TRHLGEILLYW 354
           AWCFSDPE+KRRRRVASYKAYS EGKVKASF RGFRWIK KC+  IHG*   LG +LL W
Sbjct: 160 AWCFSDPEVKRRRRVASYKAYSVEGKVKASFRRGFRWIKDKCTGFIHG*ILDLGLVLLGW 339




 Score = 65.7 bits (137), Expect(2) = 2e-039
 Identities = 22/26 (84%), Positives = 26/26 (100%)
 Frame = +1 / +1

                                     
Query: 43  GEYDRPYRNEVVPYGDRRIDIIVKPP 120
           G+YDRPYRNE+VPYGDRRID++VKPP
Sbjct: 13  GDYDRPYRNEIVPYGDRRIDLVVKPP 90



>gb|BG299831.1|BG299831 HVSMEa0022A04f Hordeum vulgare seedling shoot EST library
           HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
           cDNA clone HVSMEa0022A04f, mRNA sequence
          Length = 541

 Score =  116 bits (248), Expect(2) = 2e-039
 Identities = 47/60 (78%), Positives = 50/60 (83%)
 Frame = +1 / +3

                                                                       
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGFRWIKAKCSELIHG*TRHLGEILLYW 354
           AWCFSDPE+KRRRRVASYKAYS EGKVKASF RGFRWIK KC+  IHG*   LG +LL W
Sbjct: 222 AWCFSDPEVKRRRRVASYKAYSVEGKVKASFRRGFRWIKDKCTGFIHG*ILDLGLVLLGW 401




 Score = 65.7 bits (137), Expect(2) = 2e-039
 Identities = 22/26 (84%), Positives = 26/26 (100%)
 Frame = +1 / +3

                                     
Query: 43  GEYDRPYRNEVVPYGDRRIDIIVKPP 120
           G+YDRPYRNE+VPYGDRRID++VKPP
Sbjct: 75  GDYDRPYRNEIVPYGDRRIDLVVKPP 152



>gb|BQ768374.1|BQ768374 EBro08_SQ011_D16 _R root, 3 week, drought-stressed, cv Optic,
           EBro08 Hordeum vulgare subsp. vulgare cDNA clone
           EBro08_SQ011_D16 5', mRNA sequence
          Length = 510

 Score =  116 bits (248), Expect = 1e-025
 Identities = 47/60 (78%), Positives = 50/60 (83%)
 Frame = +1 / +2

                                                                       
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGFRWIKAKCSELIHG*TRHLGEILLYW 354
           AWCFSDPE+KRRRRVASYKAYS EGKVKASF RGFRWIK KC+  IHG*   LG +LL W
Sbjct: 44  AWCFSDPEVKRRRRVASYKAYSVEGKVKASFRRGFRWIKDKCTGFIHG*ILDLGLVLLGW 223



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 220,235,196
Number of Sequences: 312970
Number of extensions: 3043185
Number of successful extensions: 40452
Number of sequences better than 1.0e-020: 4
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6362506350
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)