TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2647895.2.1
         (709 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU987084.1|BU987084  HF13M04r HF Hordeum vulgare subsp. v...   133   7e-031
gb|BU989178.1|BU989178  HF21A09r HF Hordeum vulgare subsp. v...   133   7e-031
gb|AV928811.1|AV928811  AV928811 K. Sato unpublished cDNA li...   126   1e-028

>gb|BU987084.1|BU987084 HF13M04r HF Hordeum vulgare subsp. vulgare cDNA clone HF13M04
           5-PRIME, mRNA sequence
          Length = 579

 Score =  133 bits (286), Expect = 7e-031
 Identities = 56/120 (46%), Positives = 78/120 (65%)
 Frame = -1 / +1

                                                                       
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
           E ELG+   DI   RQC+QA K  GFEV++ KDLA+  P PWY  +DP  FS + F+   
Sbjct: 118 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTT 297

                                                                       
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
            GRI+TR +V  LE++ +AP GS    + L  A++GL++GG++ IFT  +F + RKPL E
Sbjct: 298 MGRIITRNMVKALEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 477



>gb|BU989178.1|BU989178 HF21A09r HF Hordeum vulgare subsp. vulgare cDNA clone HF21A09
           5-PRIME, mRNA sequence
          Length = 576

 Score =  133 bits (286), Expect = 7e-031
 Identities = 56/120 (46%), Positives = 78/120 (65%)
 Frame = -1 / +3

                                                                       
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
           E ELG+   DI   RQC+QA K  GFEV++ KDLA+  P PWY  +DP  FS + F+   
Sbjct: 204 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTT 383

                                                                       
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
            GRI+TR +V  LE++ +AP GS    + L  A++GL++GG++ IFT  +F + RKPL E
Sbjct: 384 MGRIITRNMVKALEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 563



>gb|AV928811.1|AV928811 AV928811 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd15m08 3', mRNA sequence
          Length = 683

 Score =  126 bits (270), Expect = 1e-028
 Identities = 52/111 (46%), Positives = 73/111 (65%)
 Frame = -1 / -2

                                                                       
Query: 607 DIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAI 428
           DI   RQC+QA K  GFEV++ KDLA+  P PWY  +DP  FS + F+    GRI+TR +
Sbjct: 679 DIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTTMGRIITRNM 500

                                                              
Query: 427 VNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
           V  LE++ +AP GS    + L  A++GL++GG++ IFT  +F + RKPL E
Sbjct: 499 VKALEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 347



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 320,760,103
Number of Sequences: 312970
Number of extensions: 6240207
Number of successful extensions: 68586
Number of sequences better than 1.0e-020: 3
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7804674456
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)