TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2646712.2.1
(581 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU975402.1|BU975402 HB31A09r BC Hordeum vulgare subsp. v... 142 1e-033
gb|BU975696.1|BU975696 HB32A09r BC Hordeum vulgare subsp. v... 142 1e-033
gb|BE230902.1|BE230902 HVSMEg0001E18f Hordeum vulgare pre-a... 140 5e-033
gb|BF254781.2|BF254781 HVSMEf0005A11f Hordeum vulgare seedl... 138 3e-032
gb|BG344412.1|BG344412 HVSMEg0009D04f Hordeum vulgare pre-a... 138 3e-032
gb|BJ450530.1|BJ450530 BJ450530 K. Sato unpublished cDNA li... 131 3e-030
gb|BJ457952.1|BJ457952 BJ457952 K. Sato unpublished cDNA li... 116 1e-025
gb|BI958488.1|BI958488 HVSMEn0015E11f Hordeum vulgare rachi... 114 5e-025
gb|BQ663162.1|BQ663162 HU01A05w HU Hordeum vulgare subsp. v... 107 4e-023
gb|BQ663264.1|BQ663264 HU01M14w HU Hordeum vulgare subsp. v... 107 4e-023
gb|CA000392.1|CA000392 HS08M20u HS Hordeum vulgare subsp. v... 107 4e-023
gb|CA001406.1|CA001406 HS18B01u HS Hordeum vulgare subsp. v... 107 4e-023
gb|CA006217.1|CA006217 HU05D06u HU Hordeum vulgare subsp. v... 107 4e-023
gb|CA010747.1|CA010747 HT08M24u HT Hordeum vulgare subsp. v... 107 4e-023
gb|CA013550.1|CA013550 HT08M24r HT Hordeum vulgare subsp. v... 107 4e-023
gb|CA000262.1|CA000262 HS09C23u HS Hordeum vulgare subsp. v... 105 3e-022
gb|CA001150.1|CA001150 HS05E05u HS Hordeum vulgare subsp. v... 105 3e-022
gb|AV929667.1|AV929667 AV929667 K. Sato unpublished cDNA li... 100 5e-021
gb|AV930574.1|AV930574 AV930574 K. Sato unpublished cDNA li... 100 5e-021
gb|AV931426.1|AV931426 AV931426 K. Sato unpublished cDNA li... 100 5e-021
gb|BM444997.2|BM444997 EBem09_SQ007_C03_R embryo, 1 Day ger... 100 6e-021
>gb|BU975402.1|BU975402 HB31A09r BC Hordeum vulgare subsp. vulgare cDNA clone HB31A09
5-PRIME, mRNA sequence
Length = 557
Score = 142 bits (305), Expect = 1e-033
Identities = 58/70 (82%), Positives = 61/70 (87%)
Frame = -1 / +1
Query: 551 AVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDT 372
AVLHREDVV LRK FP YP+P RCSD VNPRK+PYK+SNQRLRELGLEFTP AQ LYDT
Sbjct: 223 AVLHREDVVTILRKFFPEYPIPSRCSDSVNPRKRPYKMSNQRLRELGLEFTPVAQCLYDT 402
Query: 371 VVCFQEKGIL 342
VV FQEKGIL
Sbjct: 403 VVSFQEKGIL 432
Score = 99.1 bits (210), Expect(2) = 2e-023
Identities = 42/57 (73%), Positives = 44/57 (77%)
Frame = +1 / -1
Query: 343 RMPFSWKHTTVSYSACAAGVNSRPSSLSRWLEILYGCFLGFTSSEHLSGTG*PGKDL 513
RMPFSWK TTVS CA GVNSRPSS SRW +ILYG FLGFT SEHL G G GK+L
Sbjct: 431 RMPFSWKLTTVS*RHCATGVNSRPSSRSRWFDILYGRFLGFTESEHLLGMGYSGKNL 261
Score = 29.0 bits (57), Expect(2) = 2e-023
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +3 / -3
Query: 489 DGVAREGLAEGADDVLAVEH 548
DGV E LAE D VL VEH
Sbjct: 285 DGVLGEELAEDGDHVLPVEH 226
>gb|BU975696.1|BU975696 HB32A09r BC Hordeum vulgare subsp. vulgare cDNA clone HB32A09
5-PRIME, mRNA sequence
Length = 559
Score = 142 bits (305), Expect = 1e-033
Identities = 58/70 (82%), Positives = 61/70 (87%)
Frame = -1 / +1
Query: 551 AVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDT 372
AVLHREDVV LRK FP YP+P RCSD VNPRK+PYK+SNQRLRELGLEFTP AQ LYDT
Sbjct: 223 AVLHREDVVTILRKFFPEYPIPSRCSDSVNPRKRPYKMSNQRLRELGLEFTPVAQCLYDT 402
Query: 371 VVCFQEKGIL 342
VV FQEKGIL
Sbjct: 403 VVSFQEKGIL 432
Score = 99.1 bits (210), Expect(2) = 2e-023
Identities = 42/57 (73%), Positives = 44/57 (77%)
Frame = +1 / -3
Query: 343 RMPFSWKHTTVSYSACAAGVNSRPSSLSRWLEILYGCFLGFTSSEHLSGTG*PGKDL 513
RMPFSWK TTVS CA GVNSRPSS SRW +ILYG FLGFT SEHL G G GK+L
Sbjct: 431 RMPFSWKLTTVS*RHCATGVNSRPSSRSRWFDILYGRFLGFTESEHLLGMGYSGKNL 261
Score = 29.0 bits (57), Expect(2) = 2e-023
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +3 / -2
Query: 489 DGVAREGLAEGADDVLAVEH 548
DGV E LAE D VL VEH
Sbjct: 285 DGVLGEELAEDGDHVLPVEH 226
>gb|BE230902.1|BE230902 HVSMEg0001E18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001E18f, mRNA sequence
Length = 618
Score = 140 bits (301), Expect = 5e-033
Identities = 57/70 (81%), Positives = 61/70 (87%)
Frame = -1 / +3
Query: 551 AVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDT 372
AVLHREDVV LRK FP YP+P RCSD VNPRK+PYK+SN+RLRELGLEFTP AQ LYDT
Sbjct: 150 AVLHREDVVTILRKFFPEYPIPSRCSDSVNPRKRPYKMSNRRLRELGLEFTPVAQCLYDT 329
Query: 371 VVCFQEKGIL 342
VV FQEKGIL
Sbjct: 330 VVSFQEKGIL 359
Score = 92.7 bits (196), Expect(2) = 2e-021
Identities = 41/57 (71%), Positives = 43/57 (75%)
Frame = +1 / -3
Query: 343 RMPFSWKHTTVSYSACAAGVNSRPSSLSRWLEILYGCFLGFTSSEHLSGTG*PGKDL 513
RMPFSWK TTVS CA GVNSRPSS SR +ILYG FLGFT SEHL G G GK+L
Sbjct: 358 RMPFSWKLTTVS*RHCATGVNSRPSSRSRRFDILYGRFLGFTESEHLLGMGYSGKNL 188
Score = 29.0 bits (57), Expect(2) = 2e-021
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +3 / -2
Query: 489 DGVAREGLAEGADDVLAVEH 548
DGV E LAE D VL VEH
Sbjct: 212 DGVLGEELAEDGDHVLPVEH 153
>gb|BF254781.2|BF254781 HVSMEf0005A11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005A11f, mRNA sequence
Length = 586
Score = 138 bits (295), Expect = 3e-032
Identities = 54/80 (67%), Positives = 66/80 (82%)
Frame = -1 / -1
Query: 581 RAAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEF 402
+A+GRY+CA+ VLHR+DVV L K FP YPVP RCSDEVNPRKQPYK+SNQ+L++LGL+F
Sbjct: 463 QASGRYLCAERVLHRQDVVHILAKLFPEYPVPTRCSDEVNPRKQPYKMSNQKLQDLGLKF 284
Query: 401 TPAAQALYDTVVCFQEKGIL 342
TP +LY+TV QEKG L
Sbjct: 283 TPVNDSLYETVKSLQEKGHL 224
>gb|BG344412.1|BG344412 HVSMEg0009D04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009D04f, mRNA sequence
Length = 850
Score = 138 bits (295), Expect = 3e-032
Identities = 54/80 (67%), Positives = 66/80 (82%)
Frame = -1 / -2
Query: 581 RAAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEF 402
+A+GRY+CA+ VLHR+DVV L K FP YPVP RCSDEVNPRKQPYK+SNQ+L++LGL+F
Sbjct: 474 QASGRYLCAERVLHRQDVVHILAKLFPEYPVPTRCSDEVNPRKQPYKMSNQKLQDLGLKF 295
Query: 401 TPAAQALYDTVVCFQEKGIL 342
TP +LY+TV QEKG L
Sbjct: 294 TPVNDSLYETVKSLQEKGHL 235
>gb|BJ450530.1|BJ450530 BJ450530 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30a24 5', mRNA sequence
Length = 439
Score = 131 bits (281), Expect = 3e-030
Identities = 51/78 (65%), Positives = 63/78 (80%)
Frame = -1 / +3
Query: 581 RAAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEF 402
+A+GRY+CA+ VLHR+DVV L K FP Y VP RC DEVNPRKQPYK+SNQ+L++LGL+F
Sbjct: 135 QASGRYLCAERVLHRQDVVHILAKLFPEYXVPTRCXDEVNPRKQPYKMSNQKLQDLGLKF 314
Query: 401 TPAAQALYDTVVCFQEKG 348
TP +LY+TV QEKG
Sbjct: 315 TPVNDSLYETVKSLQEKG 368
>gb|BJ457952.1|BJ457952 BJ457952 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30a24 3', mRNA sequence
Length = 362
Score = 116 bits (248), Expect = 1e-025
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = -1 / -1
Query: 548 VLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTV 369
VLHR+ VV L K FP YPVP RCSDEVNPRKQPYK+SNQ+L++LGL+FTP +LY+TV
Sbjct: 359 VLHRQXVVHILAKLFPEYPVPTRCSDEVNPRKQPYKMSNQKLQDLGLKFTPVNDSLYETV 180
Query: 368 VCFQEKGIL 342
QEKG L
Sbjct: 179 KSLQEKGHL 153
>gb|BI958488.1|BI958488 HVSMEn0015E11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015E11f, mRNA sequence
Length = 620
Score = 114 bits (243), Expect = 5e-025
Identities = 44/71 (61%), Positives = 55/71 (77%)
Frame = -1 / +1
Query: 581 RAAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEF 402
+A+GRY+CA+ VLHR+DV L K FP YPVP RCSD+VNP K PYK+SN L++LGL+F
Sbjct: 280 QASGRYLCAERVLHRQDVFHILSKLFP*YPVPTRCSDDVNPPKHPYKMSNSNLQDLGLKF 459
Query: 401 TPAAQALYDTV 369
T +LYDTV
Sbjct: 460 TSVNHSLYDTV 492
>gb|BQ663162.1|BQ663162 HU01A05w HU Hordeum vulgare subsp. vulgare cDNA clone HU01A05
3-PRIME, mRNA sequence
Length = 599
Score = 107 bits (229), Expect = 4e-023
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C AVLHR ++ L FP Y V +C D+ P ++PYK SN+RLRELGLEFT
Sbjct: 450 ARGRYLCIGAVLHRAHFLQLLGDLFPQYHVTAKCEDDGKPMEKPYKFSNRRLRELGLEFT 271
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY+TV C Q+KG L
Sbjct: 270 PLNESLYETVTCLQKKGHL 214
>gb|BQ663264.1|BQ663264 HU01M14w HU Hordeum vulgare subsp. vulgare cDNA clone HU01M14
3-PRIME, mRNA sequence
Length = 585
Score = 107 bits (229), Expect = 4e-023
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = -1 / -1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C AVLHR ++ L FP Y V +C D+ P ++PYK SN+RLRELGLEFT
Sbjct: 456 ARGRYLCIGAVLHRAHFLQLLGDLFPQYHVTAKCEDDGKPMEKPYKFSNRRLRELGLEFT 277
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY+TV C Q+KG L
Sbjct: 276 PLNESLYETVTCLQKKGHL 220
>gb|CA000392.1|CA000392 HS08M20u HS Hordeum vulgare subsp. vulgare cDNA clone HS08M20
3-PRIME, mRNA sequence
Length = 545
Score = 107 bits (229), Expect = 4e-023
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C AVLHR ++ L FP Y V +C D+ P ++PYK SN+RLRELGLEFT
Sbjct: 450 ARGRYLCIGAVLHRAHFLQLLGDLFPQYHVTAKCEDDGKPMEKPYKFSNRRLRELGLEFT 271
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY+TV C Q+KG L
Sbjct: 270 PLNESLYETVTCLQKKGHL 214
>gb|CA001406.1|CA001406 HS18B01u HS Hordeum vulgare subsp. vulgare cDNA clone HS18B01
3-PRIME, mRNA sequence
Length = 481
Score = 107 bits (229), Expect = 4e-023
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = -1 / -2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C AVLHR ++ L FP Y V +C D+ P ++PYK SN+RLRELGLEFT
Sbjct: 450 ARGRYLCIGAVLHRAHFLQLLGDLFPQYHVTAKCEDDGKPMEKPYKFSNRRLRELGLEFT 271
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY+TV C Q+KG L
Sbjct: 270 PLNESLYETVTCLQKKGHL 214
>gb|CA006217.1|CA006217 HU05D06u HU Hordeum vulgare subsp. vulgare cDNA clone HU05D06
3-PRIME, mRNA sequence
Length = 548
Score = 107 bits (229), Expect = 4e-023
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C AVLHR ++ L FP Y V +C D+ P ++PYK SN+RLRELGLEFT
Sbjct: 450 ARGRYLCIGAVLHRAHFLQLLGDLFPQYHVTAKCEDDGKPMEKPYKFSNRRLRELGLEFT 271
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY+TV C Q+KG L
Sbjct: 270 PLNESLYETVTCLQKKGHL 214
>gb|CA010747.1|CA010747 HT08M24u HT Hordeum vulgare subsp. vulgare cDNA clone HT08M24
3-PRIME, mRNA sequence
Length = 554
Score = 107 bits (229), Expect = 4e-023
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C AVLHR ++ L FP Y V +C D+ P ++PYK SN+RLRELGLEFT
Sbjct: 450 ARGRYLCIGAVLHRAHFLQLLGDLFPQYHVTAKCEDDGKPMEKPYKFSNRRLRELGLEFT 271
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY+TV C Q+KG L
Sbjct: 270 PLNESLYETVTCLQKKGHL 214
>gb|CA013550.1|CA013550 HT08M24r HT Hordeum vulgare subsp. vulgare cDNA clone HT08M24
5-PRIME, mRNA sequence
Length = 544
Score = 107 bits (229), Expect = 4e-023
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C AVLHR ++ L FP Y V +C D+ P ++PYK SN+RLRELGLEFT
Sbjct: 95 ARGRYLCIGAVLHRAHFLQLLGDLFPQYHVTAKCEDDGKPMEKPYKFSNRRLRELGLEFT 274
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY+TV C Q+KG L
Sbjct: 275 PLNESLYETVTCLQKKGHL 331
>gb|CA000262.1|CA000262 HS09C23u HS Hordeum vulgare subsp. vulgare cDNA clone HS09C23
3-PRIME, mRNA sequence
Length = 541
Score = 105 bits (223), Expect = 3e-022
Identities = 41/79 (51%), Positives = 54/79 (68%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C AVLHR ++ L FP Y + +C ++ P +PYK SN+RLRELGLEFT
Sbjct: 467 ARGRYLCIGAVLHRTHFLQLLGDLFPQYHITAKCEEDGKPMAKPYKFSNRRLRELGLEFT 288
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY+TV C Q+KG L
Sbjct: 287 PLKESLYETVTCLQKKGHL 231
>gb|CA001150.1|CA001150 HS05E05u HS Hordeum vulgare subsp. vulgare cDNA clone HS05E05
3-PRIME, mRNA sequence
Length = 566
Score = 105 bits (223), Expect = 3e-022
Identities = 41/79 (51%), Positives = 54/79 (68%)
Frame = -1 / -2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C AVLHR ++ L FP Y + +C ++ P +PYK SN+RLRELGLEFT
Sbjct: 469 ARGRYLCIGAVLHRTHFLQLLGDLFPQYHITAKCEEDGKPMAKPYKFSNRRLRELGLEFT 290
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY+TV C Q+KG L
Sbjct: 289 PLKESLYETVTCLQKKGHL 233
>gb|AV929667.1|AV929667 AV929667 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16b10 3', mRNA sequence
Length = 682
Score = 100 bits (214), Expect = 5e-021
Identities = 38/79 (48%), Positives = 56/79 (70%)
Frame = -1 / -2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C VLHR ++ LR FP YP+ ++C D+ P +PY+ SNQRLR+LGL+FT
Sbjct: 531 ARGRYLCICDVLHRAHFLQLLRDLFPYYPITDKCEDDGKPMVKPYRFSNQRLRDLGLDFT 352
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++L++TV+ Q++G L
Sbjct: 351 PLKESLHETVLSLQQQGHL 295
>gb|AV930574.1|AV930574 AV930574 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24c05 3', mRNA sequence
Length = 699
Score = 100 bits (214), Expect = 5e-021
Identities = 38/79 (48%), Positives = 56/79 (70%)
Frame = -1 / -1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C VLHR ++ LR FP YP+ ++C D+ P +PY+ SNQRLR+LGL+FT
Sbjct: 540 ARGRYLCICDVLHRAHFLQLLRDLFPYYPITDKCEDDGKPMVKPYRFSNQRLRDLGLDFT 361
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++L++TV+ Q++G L
Sbjct: 360 PLKESLHETVLSLQQQGHL 304
>gb|AV931426.1|AV931426 AV931426 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19l24 3', mRNA sequence
Length = 655
Score = 100 bits (214), Expect = 5e-021
Identities = 38/79 (48%), Positives = 56/79 (70%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C VLHR ++ LR FP YP+ ++C D+ P +PY+ SNQRLR+LGL+FT
Sbjct: 539 ARGRYLCICDVLHRAHFLQLLRDLFPYYPITDKCEDDGKPMVKPYRFSNQRLRDLGLDFT 360
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++L++TV+ Q++G L
Sbjct: 359 PLKESLHETVLSLQQQGHL 303
>gb|BM444997.2|BM444997 EBem09_SQ007_C03_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_C03 5', mRNA sequence
Length = 322
Score = 99.6 bits (211), Expect(2) = 6e-021
Identities = 38/68 (55%), Positives = 50/68 (73%)
Frame = -1 / +1
Query: 545 LHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVV 366
LHR ++ R L K FP YPVP +C DEVNP + YK +NQRL++LG+EF P Q++Y+TV
Sbjct: 31 LHRGELCRVLGKLFPEYPVPTKCKDEVNPPVKGYKFTNQRLKDLGMEFVPVLQSIYETVK 210
Query: 365 CFQEKGIL 342
QEKG+L
Sbjct: 211 SLQEKGML 234
Score = 19.9 bits (37), Expect(2) = 6e-021
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -1 / +1
Query: 572 GRYICAD 552
GRYICA+
Sbjct: 1 GRYICAE 21
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 232,007,240
Number of Sequences: 312970
Number of extensions: 3688321
Number of successful extensions: 73541
Number of sequences better than 1.0e-020: 27
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6023172678
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)