TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV834352.1|AV834352 AV834352 K. Sato unpublished cDNA li... 193 4e-057
gb|BQ470446.1|BQ470446 HX03A05r HX Hordeum vulgare subsp. v... 193 4e-051
gb|BQ470603.1|BQ470603 HX03H14r HX Hordeum vulgare subsp. v... 193 4e-051
gb|CA007256.1|CA007256 HU07F09r HU Hordeum vulgare subsp. v... 193 4e-051
gb|BQ665321.1|BQ665321 HX03A05u HX Hordeum vulgare subsp. v... 160 2e-048
gb|BQ465179.1|BQ465179 HU02N24r HU Hordeum vulgare subsp. v... 187 4e-047
gb|CA025871.1|CA025871 HZ53G05r HZ Hordeum vulgare subsp. v... 138 9e-042
gb|AJ432746.1|AJ432746 AJ432746 S00002 Hordeum vulgare subs... 146 2e-037
gb|CB874708.1|CB874708 HX06B10w HX Hordeum vulgare subsp. v... 154 4e-037
gb|AL510395.1|AL510395 AL510395 Hordeum vulgare Barke devel... 105 3e-036
gb|BQ660212.1|BQ660212 HI01I09w HI Hordeum vulgare subsp. v... 151 3e-036
gb|BU995645.1|BU995645 HM10O13r HM Hordeum vulgare subsp. v... 151 3e-036
gb|CB881798.1|CB881798 HM10O13w HM Hordeum vulgare subsp. v... 141 4e-033
gb|BF622824.2|BF622824 HVSMEa0009C21f Hordeum vulgare seedl... 138 3e-032
gb|BQ663490.1|BQ663490 HU02N24u HU Hordeum vulgare subsp. v... 100 6e-031
gb|AJ462548.1|AJ462548 AJ462548 S00002 Hordeum vulgare subs... 129 1e-029
gb|BG415060.1|BG415060 HVSMEk0004P24f Hordeum vulgare testa... 126 9e-029
gb|CB875785.1|CB875785 HX09F12w HX Hordeum vulgare subsp. v... 122 1e-027
gb|BE421430.1|BE421430 HWM009.C03 ITEC HWM Barley Leaf Libr... 108 2e-023
gb|AV919193.1|AV919193 AV919193 K. Sato unpublished cDNA li... 108 2e-023
gb|AV926878.1|AV926878 AV926878 K. Sato unpublished cDNA li... 108 2e-023
gb|BU997959.1|BU997959 HI09I16r HI Hordeum vulgare subsp. v... 108 2e-023
gb|AV832731.1|AV832731 AV832731 K. Sato unpublished cDNA li... 106 1e-022
gb|BJ544669.1|BJ544669 BJ544669 K. Sato unpublished cDNA li... 106 1e-022
gb|BJ546140.1|BJ546140 BJ546140 K. Sato unpublished cDNA li... 106 1e-022
gb|BJ546986.1|BJ546986 BJ546986 K. Sato unpublished cDNA li... 106 1e-022
gb|BJ547677.1|BJ547677 BJ547677 K. Sato unpublished cDNA li... 106 1e-022
gb|BJ547950.1|BJ547950 BJ547950 K. Sato unpublished cDNA li... 106 1e-022
gb|BJ548315.1|BJ548315 BJ548315 K. Sato unpublished cDNA li... 106 1e-022
gb|BJ546987.1|BJ546987 BJ546987 K. Sato unpublished cDNA li... 105 2e-022
gb|BF626879.2|BF626879 HVSMEb0001J09f Hordeum vulgare seedl... 105 3e-022
gb|AL510339.1|AL510339 AL510339 Hordeum vulgare Barke devel... 67 2e-021
gb|BJ467740.1|BJ467740 BJ467740 K. Sato unpublished cDNA li... 100 5e-021
>gb|AV834352.1|AV834352 AV834352 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags15d19, mRNA sequence
Length = 619
Score = 193 bits (415), Expect(3) = 4e-057
Identities = 77/102 (75%), Positives = 89/102 (87%)
Frame = -3 / -2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYGKTPF+GPGN+ETL+NV+SQGLKFPD+PAVS+ ARDLIRGLLVKEPE+RLGS +GA
Sbjct: 603 LLYGKTPFRGPGNDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAA 424
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTPVTTRKKKE 271
EIKRHPFF+GLNWALIRWTAPPET K+I A T +K+
Sbjct: 423 EIKRHPFFQGLNWALIRWTAPPETPKSIVEASTLTVAVARKK 298
Score = 174 bits (374), Expect(3) = 3e-053
Identities = 77/93 (82%), Positives = 79/93 (84%)
Frame = +2 / +2
Query: 299 VGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKL 478
V A +M F VSGGAV RIKAQFRP KKGCRLIS AP EPSR SGSFTS+PLIRSRAW L
Sbjct: 326 VEASTMLFGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*L 505
Query: 479 TAGLSGNFKPCEITFESVSSLPGPLNGVLP*SN 577
TAGLSGNF PCE TF SVSSLPGPLNGVLP*SN
Sbjct: 506 TAGLSGNFSPCETTFVSVSSLPGPLNGVLP*SN 604
Score = 145 bits (312), Expect(3) = 3e-048
Identities = 66/88 (75%), Positives = 69/88 (78%)
Frame = -2 / -1
Query: 577 ITLWQDTIQGTWQ*GNTLKCDLTGLEVP**SSCKLPRSRSDQRAACERARVPAWLVERSH 398
I LWQDTIQGTWQ* NT KC LTG EVP** SC+LP SRSDQR ACE AR PA L ERS
Sbjct: 604 IALWQDTIQGTWQ**NTYKCGLTGAEVP**PSCELPGSRSDQRVACEGARAPARLEERSC 425
Query: 397 *D*AASLL*RPELGLDPVDRTTRDPEEH 314
D AASLL RPELGLDP+D T DPE+H
Sbjct: 424 RDQAASLLPRPELGLDPLDCTAGDPEKH 341
Score = 144 bits (309), Expect(3) = 4e-039
Identities = 60/87 (68%), Positives = 69/87 (79%)
Frame = +1 / +1
Query: 313 NVLQGLWWCGPPDQGPVQAFKEGMPLNLSGSSRRAKPVLWLFHKQPSDQISSVEAYSWII 492
+ +GL C P DQGPVQA +EGMPL+L S RA PVLWL HKQPSDQI+S+ A+SW I
Sbjct: 340 DAFRGLRRCSPTDQGPVQALEEGMPLDLGSSFPRA*PVLWLLHKQPSDQIASLVAHSWAI 519
Query: 493 RELQAL*DHI*ECFLIARSLEWCLAIE 573
RELQ L*DHI +CF+IARS EWCLAIE
Sbjct: 520 RELQPL*DHICKCFIIARSPEWCLAIE 600
Score = 125 bits (268), Expect(2) = 9e-030
Identities = 63/85 (74%), Positives = 67/85 (78%)
Frame = -1 / -3
Query: 578 NYSMARHHSRDLAMRKHSQM*SHRA*SSLIIQL*ASTLEI*SEGCL*KSQSTGLARREEP 399
N SMARHHS DLAM KH QM SHR *SSLI QL*A+ L I*SEGCL*+SQSTG AR +E
Sbjct: 605 NCSMARHHSGDLAMMKHLQMWSHRG*SSLIAQL*ATRLAI*SEGCL*RSQSTG*ARGKEL 426
Query: 398 LRLSGIPSLKA*TGP*SGGPHHQRP 324
R SGIPS KA*TGP*S G H +RP
Sbjct: 425 PRSSGIPSSKA*TGP*SVGLHRRRP 351
Score = 115 bits (245), Expect(3) = 2e-028
Identities = 54/89 (60%), Positives = 59/89 (66%)
Frame = +3 / +3
Query: 312 QCSSGSLVVRSTGSRPSSGLQRRDAA*SQWLLSTXXXXXXXXXXXXXXXXXERGSLQLDY 491
+C SGS V+S GSRPSSGL RRDAA*S+ LLS+ E GS QL Y
Sbjct: 339 RCFSGSPAVQSNGSRPSSGLGRRDAA*SRQLLSSSLAGALAPSQATL*SDREPGSSQLGY 518
Query: 492 QGTSSPVRSHLRVFPHCQVP*MVSCHRVI 578
QGTS+PVR HL VF HCQVP*MVSCHR I
Sbjct: 519 QGTSAPVRPHL*VFHHCQVP*MVSCHRAI 605
Score = 60.2 bits (125), Expect(3) = 3e-048
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / -2
Query: 300 TPVTTRKKKEGKCLEFRLNGDDIEFELF* 214
T RKKKEGKCLEFR+NGDDIEFELF*
Sbjct: 321 TVAVARKKKEGKCLEFRMNGDDIEFELF* 235
Score = 40.5 bits (82), Expect(3) = 4e-057
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / -3
Query: 81 KIGC*ACNFMPC*YHQ 34
K+GC ACNF+PC*YHQ
Sbjct: 50 KVGCCACNFIPC*YHQ 3
Score = 38.2 bits (77), Expect(3) = 3e-053
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / +1
Query: 214 LKELELDVVTIQPEFQTFAFLFLAC 288
L+EL+LDVV++ PE + AFL L C
Sbjct: 235 LEELKLDVVSVHPELEALAFLLLPC 309
Score = 35.9 bits (72), Expect(3) = 3e-053
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2 / +1
Query: 32 I*WY*QGIKLQA*QPILPYFPTMTNFQQKT 121
I*WY*QGIKLQA P L + T ++Q T
Sbjct: 1 I*WY*QGIKLQAQHPTLLSYSTSQHWQVTT 90
Score = 31.8 bits (63), Expect(3) = 4e-039
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1 / +3
Query: 34 LMVLTRHKVTGLTANLTLL 90
LMVLTR+KVTG T +LT L
Sbjct: 3 LMVLTRNKVTGTTPDLTQL 59
Score = 28.1 bits (55), Expect(3) = 4e-057
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2 / -1
Query: 286 TQEKGRQMSGIPAEW*RHRV 227
T+E+GRQ+ +P E RHRV
Sbjct: 307 TEEEGRQVPRVPDERRRHRV 248
Score = 27.6 bits (54), Expect(3) = 2e-028
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / +2
Query: 36 DGINKA*SYRLNSQSY 83
DGINK *SYR N++ Y
Sbjct: 5 DGINKE*SYRHNTRPY 52
Score = 25.8 bits (50), Expect(3) = 3e-048
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1 / -1
Query: 83 VRLAVKPVTLCLVNTI 36
VR V PVTL LVNTI
Sbjct: 52 VRSGVVPVTLFLVNTI 5
Score = 24.4 bits (47), Expect(3) = 4e-039
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2 / +2
Query: 260 RHLPSFFLRVVTGV 301
RHLPSFF R V
Sbjct: 281 RHLPSFFFRATATV 322
Score = 24.0 bits (46), Expect(2) = 9e-030
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / -3
Query: 287 HARKRKANVWNSG*MVTT 234
H R+RKA+ +SG* TT
Sbjct: 308 HGRRRKASASSSG*TETT 255
Score = 22.1 bits (42), Expect(3) = 2e-028
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3 / +3
Query: 234 CRHHSAGIPDICLPFSCV 287
CR S+G CLP S V
Sbjct: 255 CRLRSSGTRGTCLPSSSV 308
>gb|BQ470446.1|BQ470446 HX03A05r HX Hordeum vulgare subsp. vulgare cDNA clone HX03A05
5-PRIME, mRNA sequence
Length = 666
Score = 193 bits (415), Expect(2) = 4e-051
Identities = 77/102 (75%), Positives = 89/102 (87%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYGKTPF+GPGN+ETL+NV+SQGLKFPD+PAVS+ ARDLIRGLLVKEPE+RLGS +GA
Sbjct: 248 LLYGKTPFRGPGNDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAA 427
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTPVTTRKKKE 271
EIKRHPFF+GLNWALIRWTAPPET K+I A T +K+
Sbjct: 428 EIKRHPFFQGLNWALIRWTAPPETPKSIVEASTLTVAVARKK 553
Score = 174 bits (374), Expect(2) = 2e-048
Identities = 77/93 (82%), Positives = 79/93 (84%)
Frame = +2 / -1
Query: 299 VGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKL 478
V A +M F VSGGAV RIKAQFRP KKGCRLIS AP EPSR SGSFTS+PLIRSRAW L
Sbjct: 525 VEASTMLFGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*L 346
Query: 479 TAGLSGNFKPCEITFESVSSLPGPLNGVLP*SN 577
TAGLSGNF PCE TF SVSSLPGPLNGVLP*SN
Sbjct: 345 TAGLSGNFSPCETTFVSVSSLPGPLNGVLP*SN 247
Score = 145 bits (312), Expect(2) = 1e-046
Identities = 66/88 (75%), Positives = 69/88 (78%)
Frame = -2 / +1
Query: 577 ITLWQDTIQGTWQ*GNTLKCDLTGLEVP**SSCKLPRSRSDQRAACERARVPAWLVERSH 398
I LWQDTIQGTWQ* NT KC LTG EVP** SC+LP SRSDQR ACE AR PA L ERS
Sbjct: 247 IALWQDTIQGTWQ**NTYKCGLTGAEVP**PSCELPGSRSDQRVACEGARAPARLEERSC 426
Query: 397 *D*AASLL*RPELGLDPVDRTTRDPEEH 314
D AASLL RPELGLDP+D T DPE+H
Sbjct: 427 RDQAASLLPRPELGLDPLDCTAGDPEKH 510
Score = 144 bits (309), Expect(2) = 2e-035
Identities = 60/87 (68%), Positives = 69/87 (79%)
Frame = +1 / -3
Query: 313 NVLQGLWWCGPPDQGPVQAFKEGMPLNLSGSSRRAKPVLWLFHKQPSDQISSVEAYSWII 492
+ +GL C P DQGPVQA +EGMPL+L S RA PVLWL HKQPSDQI+S+ A+SW I
Sbjct: 511 DAFRGLRRCSPTDQGPVQALEEGMPLDLGSSFPRA*PVLWLLHKQPSDQIASLVAHSWAI 332
Query: 493 RELQAL*DHI*ECFLIARSLEWCLAIE 573
RELQ L*DHI +CF+IARS EWCLAIE
Sbjct: 331 RELQPL*DHICKCFIIARSPEWCLAIE 251
Score = 125 bits (268), Expect(2) = 9e-030
Identities = 63/85 (74%), Positives = 67/85 (78%)
Frame = -1 / +3
Query: 578 NYSMARHHSRDLAMRKHSQM*SHRA*SSLIIQL*ASTLEI*SEGCL*KSQSTGLARREEP 399
N SMARHHS DLAM KH QM SHR *SSLI QL*A+ L I*SEGCL*+SQSTG AR +E
Sbjct: 246 NCSMARHHSGDLAMMKHLQMWSHRG*SSLIAQL*ATRLAI*SEGCL*RSQSTG*ARGKEL 425
Query: 398 LRLSGIPSLKA*TGP*SGGPHHQRP 324
R SGIPS KA*TGP*S G H +RP
Sbjct: 426 PRSSGIPSSKA*TGP*SVGLHRRRP 500
Score = 115 bits (245), Expect(2) = 4e-026
Identities = 54/89 (60%), Positives = 59/89 (66%)
Frame = +3 / -2
Query: 312 QCSSGSLVVRSTGSRPSSGLQRRDAA*SQWLLSTXXXXXXXXXXXXXXXXXERGSLQLDY 491
+C SGS V+S GSRPSSGL RRDAA*S+ LLS+ E GS QL Y
Sbjct: 512 RCFSGSPAVQSNGSRPSSGLGRRDAA*SRQLLSSSLAGALAPSQATL*SDREPGSSQLGY 333
Query: 492 QGTSSPVRSHLRVFPHCQVP*MVSCHRVI 578
QGTS+PVR HL VF HCQVP*MVSCHR I
Sbjct: 332 QGTSAPVRPHL*VFHHCQVP*MVSCHRAI 246
Score = 60.2 bits (125), Expect(2) = 1e-046
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / +2
Query: 300 TPVTTRKKKEGKCLEFRLNGDDIEFELF* 214
T RKKKEGKCLEFR+NGDDIEFELF*
Sbjct: 530 TVAVARKKKEGKCLEFRMNGDDIEFELF* 616
Score = 38.2 bits (77), Expect(2) = 2e-048
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / -3
Query: 214 LKELELDVVTIQPEFQTFAFLFLAC 288
L+EL+LDVV++ PE + AFL L C
Sbjct: 616 LEELKLDVVSVHPELEALAFLLLPC 542
Score = 28.1 bits (55), Expect(2) = 4e-051
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2 / +1
Query: 286 TQEKGRQMSGIPAEW*RHRV 227
T+E+GRQ+ +P E RHRV
Sbjct: 544 TEEEGRQVPRVPDERRRHRV 603
Score = 24.4 bits (47), Expect(2) = 2e-035
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2 / -1
Query: 260 RHLPSFFLRVVTGV 301
RHLPSFF R V
Sbjct: 570 RHLPSFFFRATATV 529
Score = 24.0 bits (46), Expect(2) = 9e-030
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / +3
Query: 287 HARKRKANVWNSG*MVTT 234
H R+RKA+ +SG* TT
Sbjct: 543 HGRRRKASASSSG*TETT 596
Score = 22.1 bits (42), Expect(2) = 4e-026
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3 / -2
Query: 234 CRHHSAGIPDICLPFSCV 287
CR S+G CLP S V
Sbjct: 596 CRLRSSGTRGTCLPSSSV 543
>gb|BQ470603.1|BQ470603 HX03H14r HX Hordeum vulgare subsp. vulgare cDNA clone HX03H14
5-PRIME, mRNA sequence
Length = 629
Score = 193 bits (415), Expect(2) = 4e-051
Identities = 77/102 (75%), Positives = 89/102 (87%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYGKTPF+GPGN+ETL+NV+SQGLKFPD+PAVS+ ARDLIRGLLVKEPE+RLGS +GA
Sbjct: 248 LLYGKTPFRGPGNDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAA 427
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTPVTTRKKKE 271
EIKRHPFF+GLNWALIRWTAPPET K+I A T +K+
Sbjct: 428 EIKRHPFFQGLNWALIRWTAPPETPKSIVEASTLTVAVARKK 553
Score = 174 bits (374), Expect(2) = 2e-048
Identities = 77/93 (82%), Positives = 79/93 (84%)
Frame = +2 / -3
Query: 299 VGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKL 478
V A +M F VSGGAV RIKAQFRP KKGCRLIS AP EPSR SGSFTS+PLIRSRAW L
Sbjct: 525 VEASTMLFGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*L 346
Query: 479 TAGLSGNFKPCEITFESVSSLPGPLNGVLP*SN 577
TAGLSGNF PCE TF SVSSLPGPLNGVLP*SN
Sbjct: 345 TAGLSGNFSPCETTFVSVSSLPGPLNGVLP*SN 247
Score = 145 bits (312), Expect(2) = 1e-046
Identities = 66/88 (75%), Positives = 69/88 (78%)
Frame = -2 / +1
Query: 577 ITLWQDTIQGTWQ*GNTLKCDLTGLEVP**SSCKLPRSRSDQRAACERARVPAWLVERSH 398
I LWQDTIQGTWQ* NT KC LTG EVP** SC+LP SRSDQR ACE AR PA L ERS
Sbjct: 247 IALWQDTIQGTWQ**NTYKCGLTGAEVP**PSCELPGSRSDQRVACEGARAPARLEERSC 426
Query: 397 *D*AASLL*RPELGLDPVDRTTRDPEEH 314
D AASLL RPELGLDP+D T DPE+H
Sbjct: 427 RDQAASLLPRPELGLDPLDCTAGDPEKH 510
Score = 144 bits (309), Expect(2) = 2e-035
Identities = 60/87 (68%), Positives = 69/87 (79%)
Frame = +1 / -2
Query: 313 NVLQGLWWCGPPDQGPVQAFKEGMPLNLSGSSRRAKPVLWLFHKQPSDQISSVEAYSWII 492
+ +GL C P DQGPVQA +EGMPL+L S RA PVLWL HKQPSDQI+S+ A+SW I
Sbjct: 511 DAFRGLRRCSPTDQGPVQALEEGMPLDLGSSFPRA*PVLWLLHKQPSDQIASLVAHSWAI 332
Query: 493 RELQAL*DHI*ECFLIARSLEWCLAIE 573
RELQ L*DHI +CF+IARS EWCLAIE
Sbjct: 331 RELQPL*DHICKCFIIARSPEWCLAIE 251
Score = 125 bits (268), Expect(2) = 9e-030
Identities = 63/85 (74%), Positives = 67/85 (78%)
Frame = -1 / +3
Query: 578 NYSMARHHSRDLAMRKHSQM*SHRA*SSLIIQL*ASTLEI*SEGCL*KSQSTGLARREEP 399
N SMARHHS DLAM KH QM SHR *SSLI QL*A+ L I*SEGCL*+SQSTG AR +E
Sbjct: 246 NCSMARHHSGDLAMMKHLQMWSHRG*SSLIAQL*ATRLAI*SEGCL*RSQSTG*ARGKEL 425
Query: 398 LRLSGIPSLKA*TGP*SGGPHHQRP 324
R SGIPS KA*TGP*S G H +RP
Sbjct: 426 PRSSGIPSSKA*TGP*SVGLHRRRP 500
Score = 115 bits (245), Expect(2) = 4e-026
Identities = 54/89 (60%), Positives = 59/89 (66%)
Frame = +3 / -1
Query: 312 QCSSGSLVVRSTGSRPSSGLQRRDAA*SQWLLSTXXXXXXXXXXXXXXXXXERGSLQLDY 491
+C SGS V+S GSRPSSGL RRDAA*S+ LLS+ E GS QL Y
Sbjct: 512 RCFSGSPAVQSNGSRPSSGLGRRDAA*SRQLLSSSLAGALAPSQATL*SDREPGSSQLGY 333
Query: 492 QGTSSPVRSHLRVFPHCQVP*MVSCHRVI 578
QGTS+PVR HL VF HCQVP*MVSCHR I
Sbjct: 332 QGTSAPVRPHL*VFHHCQVP*MVSCHRAI 246
Score = 60.2 bits (125), Expect(2) = 1e-046
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / +2
Query: 300 TPVTTRKKKEGKCLEFRLNGDDIEFELF* 214
T RKKKEGKCLEFR+NGDDIEFELF*
Sbjct: 530 TVAVARKKKEGKCLEFRMNGDDIEFELF* 616
Score = 38.2 bits (77), Expect(2) = 2e-048
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / -2
Query: 214 LKELELDVVTIQPEFQTFAFLFLAC 288
L+EL+LDVV++ PE + AFL L C
Sbjct: 616 LEELKLDVVSVHPELEALAFLLLPC 542
Score = 28.1 bits (55), Expect(2) = 4e-051
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2 / +1
Query: 286 TQEKGRQMSGIPAEW*RHRV 227
T+E+GRQ+ +P E RHRV
Sbjct: 544 TEEEGRQVPRVPDERRRHRV 603
Score = 24.4 bits (47), Expect(2) = 2e-035
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2 / -3
Query: 260 RHLPSFFLRVVTGV 301
RHLPSFF R V
Sbjct: 570 RHLPSFFFRATATV 529
Score = 24.0 bits (46), Expect(2) = 9e-030
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / +3
Query: 287 HARKRKANVWNSG*MVTT 234
H R+RKA+ +SG* TT
Sbjct: 543 HGRRRKASASSSG*TETT 596
Score = 22.1 bits (42), Expect(2) = 4e-026
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3 / -1
Query: 234 CRHHSAGIPDICLPFSCV 287
CR S+G CLP S V
Sbjct: 596 CRLRSSGTRGTCLPSSSV 543
>gb|CA007256.1|CA007256 HU07F09r HU Hordeum vulgare subsp. vulgare cDNA clone HU07F09
5-PRIME, mRNA sequence
Length = 592
Score = 193 bits (415), Expect(2) = 4e-051
Identities = 77/102 (75%), Positives = 89/102 (87%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYGKTPF+GPGN+ETL+NV+SQGLKFPD+PAVS+ ARDLIRGLLVKEPE+RLGS +GA
Sbjct: 185 LLYGKTPFRGPGNDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAA 364
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTPVTTRKKKE 271
EIKRHPFF+GLNWALIRWTAPPET K+I A T +K+
Sbjct: 365 EIKRHPFFQGLNWALIRWTAPPETPKSIVEASTLTVAVARKK 490
Score = 174 bits (374), Expect(2) = 2e-048
Identities = 77/93 (82%), Positives = 79/93 (84%)
Frame = +2 / -2
Query: 299 VGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKL 478
V A +M F VSGGAV RIKAQFRP KKGCRLIS AP EPSR SGSFTS+PLIRSRAW L
Sbjct: 462 VEASTMLFGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*L 283
Query: 479 TAGLSGNFKPCEITFESVSSLPGPLNGVLP*SN 577
TAGLSGNF PCE TF SVSSLPGPLNGVLP*SN
Sbjct: 282 TAGLSGNFSPCETTFVSVSSLPGPLNGVLP*SN 184
Score = 145 bits (312), Expect(2) = 1e-046
Identities = 66/88 (75%), Positives = 69/88 (78%)
Frame = -2 / +1
Query: 577 ITLWQDTIQGTWQ*GNTLKCDLTGLEVP**SSCKLPRSRSDQRAACERARVPAWLVERSH 398
I LWQDTIQGTWQ* NT KC LTG EVP** SC+LP SRSDQR ACE AR PA L ERS
Sbjct: 184 IALWQDTIQGTWQ**NTYKCGLTGAEVP**PSCELPGSRSDQRVACEGARAPARLEERSC 363
Query: 397 *D*AASLL*RPELGLDPVDRTTRDPEEH 314
D AASLL RPELGLDP+D T DPE+H
Sbjct: 364 RDQAASLLPRPELGLDPLDCTAGDPEKH 447
Score = 144 bits (309), Expect(2) = 2e-035
Identities = 60/87 (68%), Positives = 69/87 (79%)
Frame = +1 / -1
Query: 313 NVLQGLWWCGPPDQGPVQAFKEGMPLNLSGSSRRAKPVLWLFHKQPSDQISSVEAYSWII 492
+ +GL C P DQGPVQA +EGMPL+L S RA PVLWL HKQPSDQI+S+ A+SW I
Sbjct: 448 DAFRGLRRCSPTDQGPVQALEEGMPLDLGSSFPRA*PVLWLLHKQPSDQIASLVAHSWAI 269
Query: 493 RELQAL*DHI*ECFLIARSLEWCLAIE 573
RELQ L*DHI +CF+IARS EWCLAIE
Sbjct: 268 RELQPL*DHICKCFIIARSPEWCLAIE 188
Score = 125 bits (268), Expect(2) = 9e-030
Identities = 63/85 (74%), Positives = 67/85 (78%)
Frame = -1 / +3
Query: 578 NYSMARHHSRDLAMRKHSQM*SHRA*SSLIIQL*ASTLEI*SEGCL*KSQSTGLARREEP 399
N SMARHHS DLAM KH QM SHR *SSLI QL*A+ L I*SEGCL*+SQSTG AR +E
Sbjct: 183 NCSMARHHSGDLAMMKHLQMWSHRG*SSLIAQL*ATRLAI*SEGCL*RSQSTG*ARGKEL 362
Query: 398 LRLSGIPSLKA*TGP*SGGPHHQRP 324
R SGIPS KA*TGP*S G H +RP
Sbjct: 363 PRSSGIPSSKA*TGP*SVGLHRRRP 437
Score = 115 bits (245), Expect(2) = 4e-026
Identities = 54/89 (60%), Positives = 59/89 (66%)
Frame = +3 / -3
Query: 312 QCSSGSLVVRSTGSRPSSGLQRRDAA*SQWLLSTXXXXXXXXXXXXXXXXXERGSLQLDY 491
+C SGS V+S GSRPSSGL RRDAA*S+ LLS+ E GS QL Y
Sbjct: 449 RCFSGSPAVQSNGSRPSSGLGRRDAA*SRQLLSSSLAGALAPSQATL*SDREPGSSQLGY 270
Query: 492 QGTSSPVRSHLRVFPHCQVP*MVSCHRVI 578
QGTS+PVR HL VF HCQVP*MVSCHR I
Sbjct: 269 QGTSAPVRPHL*VFHHCQVP*MVSCHRAI 183
Score = 60.2 bits (125), Expect(2) = 1e-046
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / +2
Query: 300 TPVTTRKKKEGKCLEFRLNGDDIEFELF* 214
T RKKKEGKCLEFR+NGDDIEFELF*
Sbjct: 467 TVAVARKKKEGKCLEFRMNGDDIEFELF* 553
Score = 38.2 bits (77), Expect(2) = 2e-048
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / -1
Query: 214 LKELELDVVTIQPEFQTFAFLFLAC 288
L+EL+LDVV++ PE + AFL L C
Sbjct: 553 LEELKLDVVSVHPELEALAFLLLPC 479
Score = 28.1 bits (55), Expect(2) = 4e-051
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2 / +1
Query: 286 TQEKGRQMSGIPAEW*RHRV 227
T+E+GRQ+ +P E RHRV
Sbjct: 481 TEEEGRQVPRVPDERRRHRV 540
Score = 24.4 bits (47), Expect(2) = 2e-035
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2 / -2
Query: 260 RHLPSFFLRVVTGV 301
RHLPSFF R V
Sbjct: 507 RHLPSFFFRATATV 466
Score = 24.0 bits (46), Expect(2) = 9e-030
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / +3
Query: 287 HARKRKANVWNSG*MVTT 234
H R+RKA+ +SG* TT
Sbjct: 480 HGRRRKASASSSG*TETT 533
Score = 22.1 bits (42), Expect(2) = 4e-026
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3 / -3
Query: 234 CRHHSAGIPDICLPFSCV 287
CR S+G CLP S V
Sbjct: 533 CRLRSSGTRGTCLPSSSV 480
>gb|BQ665321.1|BQ665321 HX03A05u HX Hordeum vulgare subsp. vulgare cDNA clone HX03A05
3-PRIME, mRNA sequence
Length = 594
Score = 160 bits (344), Expect(3) = 2e-048
Identities = 65/89 (73%), Positives = 76/89 (85%)
Frame = -3 / -3
Query: 537 EETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNW 358
+ETL+NV+SQGLKFPD+PAVS+ ARDLIRGLLVKEPE+RLGS +GA EIKRHPFF+GLNW
Sbjct: 592 DETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNW 413
Query: 357 ALIRWTAPPETLKNIDTAPTPVTTRKKKE 271
ALIRWTAPPET K+I A T +K+
Sbjct: 412 ALIRWTAPPETPKSIVEASTLTVAVARKK 326
Score = 144 bits (308), Expect(3) = 2e-045
Identities = 64/80 (80%), Positives = 66/80 (82%)
Frame = +2 / +3
Query: 299 VGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKL 478
V A +M F VSGGAV RIKAQFRP KKGCRLIS AP EPSR SGSFTS+PLIRSRAW L
Sbjct: 354 VEASTMLFGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*L 533
Query: 479 TAGLSGNFKPCEITFESVSS 538
TAGLSGNF PCE TF SVSS
Sbjct: 534 TAGLSGNFSPCETTFVSVSS 593
Score = 118 bits (253), Expect(3) = 2e-032
Identities = 49/75 (65%), Positives = 58/75 (77%)
Frame = +1 / +2
Query: 313 NVLQGLWWCGPPDQGPVQAFKEGMPLNLSGSSRRAKPVLWLFHKQPSDQISSVEAYSWII 492
+ +GL C P DQGPVQA +EGMPL+L S RA PVLWL HKQPSDQI+S+ A+SW I
Sbjct: 368 DAFRGLRRCSPTDQGPVQALEEGMPLDLGSSFPRA*PVLWLLHKQPSDQIASLVAHSWAI 547
Query: 493 RELQAL*DHI*ECFL 537
RELQ L*DHI +CF+
Sbjct: 548 RELQPL*DHICKCFI 592
Score = 114 bits (244), Expect(3) = 4e-039
Identities = 53/73 (72%), Positives = 56/73 (76%)
Frame = -2 / -2
Query: 532 NTLKCDLTGLEVP**SSCKLPRSRSDQRAACERARVPAWLVERSH*D*AASLL*RPELGL 353
NT KC LTG EVP** SC+LP SRSDQR ACE AR PA L ERS D AASLL RPELGL
Sbjct: 587 NTYKCGLTGAEVP**PSCELPGSRSDQRVACEGARAPARLEERSCRDQAASLLPRPELGL 408
Query: 352 DPVDRTTRDPEEH 314
DP+D T DPE+H
Sbjct: 407 DPLDCTAGDPEKH 369
Score = 100 bits (214), Expect(2) = 2e-022
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = -1 / -1
Query: 539 MRKHSQM*SHRA*SSLIIQL*ASTLEI*SEGCL*KSQSTGLARREEPLRLSGIPSLKA*T 360
M KH QM SHR *SSLI QL*A+ L I*SEGCL*+SQSTG AR +E R SGIPS KA*T
Sbjct: 594 MMKHLQMWSHRG*SSLIAQL*ATRLAI*SEGCL*RSQSTG*ARGKELPRSSGIPSSKA*T 415
Query: 359 GP*SGGPHHQRP 324
GP*S G H +RP
Sbjct: 414 GP*SVGLHRRRP 379
Score = 60.2 bits (125), Expect(3) = 4e-039
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / -3
Query: 300 TPVTTRKKKEGKCLEFRLNGDDIEFELF* 214
T RKKKEGKCLEFR+NGDDIEFELF*
Sbjct: 349 TVAVARKKKEGKCLEFRMNGDDIEFELF* 263
Score = 43.2 bits (88), Expect(3) = 2e-048
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / -1
Query: 81 KIGC*ACNFMPC*YHQILED 22
K+GC ACNF+PC*YHQI ++
Sbjct: 78 KVGCCACNFIPC*YHQISDE 19
Score = 40.0 bits (81), Expect(3) = 2e-045
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +2 / +2
Query: 23 SSNI*WY*QGIKLQA*QPILPYFPTMTNFQQKT 121
SS+I*WY*QGIKLQA P L + T ++Q T
Sbjct: 20 SSDI*WY*QGIKLQAQHPTLLSYSTSQHWQVTT 118
Score = 38.2 bits (77), Expect(3) = 2e-045
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / +2
Query: 214 LKELELDVVTIQPEFQTFAFLFLAC 288
L+EL+LDVV++ PE + AFL L C
Sbjct: 263 LEELKLDVVSVHPELEALAFLLLPC 337
Score = 35.0 bits (70), Expect(3) = 2e-032
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1 / +1
Query: 31 YLMVLTRHKVTGLTANLTLL 90
YLMVLTR+KVTG T +LT L
Sbjct: 28 YLMVLTRNKVTGTTPDLTQL 87
Score = 28.1 bits (55), Expect(3) = 2e-048
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2 / -2
Query: 286 TQEKGRQMSGIPAEW*RHRV 227
T+E+GRQ+ +P E RHRV
Sbjct: 335 TEEEGRQVPRVPDERRRHRV 276
Score = 25.8 bits (50), Expect(3) = 4e-039
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1 / -2
Query: 83 VRLAVKPVTLCLVNTI 36
VR V PVTL LVNTI
Sbjct: 80 VRSGVVPVTLFLVNTI 33
Score = 24.4 bits (47), Expect(3) = 2e-032
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2 / +3
Query: 260 RHLPSFFLRVVTGV 301
RHLPSFF R V
Sbjct: 309 RHLPSFFFRATATV 350
Score = 24.0 bits (46), Expect(2) = 2e-022
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / -1
Query: 287 HARKRKANVWNSG*MVTT 234
H R+RKA+ +SG* TT
Sbjct: 336 HGRRRKASASSSG*TETT 283
>gb|BQ465179.1|BQ465179 HU02N24r HU Hordeum vulgare subsp. vulgare cDNA clone HU02N24
5-PRIME, mRNA sequence
Length = 624
Score = 187 bits (403), Expect = 4e-047
Identities = 72/84 (85%), Positives = 81/84 (96%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYGKTPF+GPGN+ETL+NV+SQGLKFPD+PAVS+ ARDLIRGLLVKEPE+RLGS +GA
Sbjct: 350 LLYGKTPFRGPGNDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAA 529
Query: 396 EIKRHPFFEGLNWALIRWTAPPET 325
EIKRHPFF+GLNWALIRWTAPPET
Sbjct: 530 EIKRHPFFQGLNWALIRWTAPPET 601
Score = 170 bits (365), Expect = 7e-042
Identities = 75/91 (82%), Positives = 77/91 (84%)
Frame = +2 / -1
Query: 305 AVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTA 484
A +M VSGGAV RIKAQFRP KKGCRLIS AP EPSR SGSFTS+PLIRSRAW LTA
Sbjct: 621 ASTMLXGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTA 442
Query: 485 GLSGNFKPCEITFESVSSLPGPLNGVLP*SN 577
GLSGNF PCE TF SVSSLPGPLNGVLP*SN
Sbjct: 441 GLSGNFSPCETTFVSVSSLPGPLNGVLP*SN 349
Score = 144 bits (308), Expect = 5e-034
Identities = 60/84 (71%), Positives = 68/84 (80%)
Frame = +1 / -3
Query: 322 QGLWWCGPPDQGPVQAFKEGMPLNLSGSSRRAKPVLWLFHKQPSDQISSVEAYSWIIREL 501
+GL C P DQGPVQA +EGMPL+L S RA PVLWL HKQPSDQI+S+ A+SW IREL
Sbjct: 604 RGLRRCSPTDQGPVQALEEGMPLDLGSSFPRA*PVLWLLHKQPSDQIASLVAHSWAIREL 425
Query: 502 QAL*DHI*ECFLIARSLEWCLAIE 573
Q L*DHI +CF+IARS EWCLAIE
Sbjct: 424 QPL*DHICKCFIIARSPEWCLAIE 353
Score = 143 bits (306), Expect = 1e-033
Identities = 65/88 (73%), Positives = 68/88 (77%)
Frame = -2 / +1
Query: 577 ITLWQDTIQGTWQ*GNTLKCDLTGLEVP**SSCKLPRSRSDQRAACERARVPAWLVERSH 398
I LWQDTIQGTWQ* NT KC LTG EVP** SC+LP SRSDQR ACE AR PA L ERS
Sbjct: 349 IALWQDTIQGTWQ**NTYKCGLTGAEVP**PSCELPGSRSDQRVACEGARAPARLEERSC 528
Query: 397 *D*AASLL*RPELGLDPVDRTTRDPEEH 314
D AASLL RPELGLDP+D T DP +H
Sbjct: 529 RDQAASLLPRPELGLDPLDCTAGDPXKH 612
Score = 125 bits (268), Expect = 2e-028
Identities = 63/85 (74%), Positives = 67/85 (78%)
Frame = -1 / +3
Query: 578 NYSMARHHSRDLAMRKHSQM*SHRA*SSLIIQL*ASTLEI*SEGCL*KSQSTGLARREEP 399
N SMARHHS DLAM KH QM SHR *SSLI QL*A+ L I*SEGCL*+SQSTG AR +E
Sbjct: 348 NCSMARHHSGDLAMMKHLQMWSHRG*SSLIAQL*ATRLAI*SEGCL*RSQSTG*ARGKEL 527
Query: 398 LRLSGIPSLKA*TGP*SGGPHHQRP 324
R SGIPS KA*TGP*S G H +RP
Sbjct: 528 PRSSGIPSSKA*TGP*SVGLHRRRP 602
Score = 116 bits (247), Expect = 1e-025
Identities = 54/89 (60%), Positives = 59/89 (66%)
Frame = +3 / -2
Query: 312 QCSSGSLVVRSTGSRPSSGLQRRDAA*SQWLLSTXXXXXXXXXXXXXXXXXERGSLQLDY 491
+C SGS V+S GSRPSSGL RRDAA*S+ LLS+ E GS QL Y
Sbjct: 614 RCXSGSPAVQSNGSRPSSGLGRRDAA*SRQLLSSSLAGALAPSQATL*SDREPGSSQLGY 435
Query: 492 QGTSSPVRSHLRVFPHCQVP*MVSCHRVI 578
QGTS+PVR HL VF HCQVP*MVSCHR I
Sbjct: 434 QGTSAPVRPHL*VFHHCQVP*MVSCHRAI 348
>gb|CA025871.1|CA025871 HZ53G05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53G05
5-PRIME, mRNA sequence
Length = 548
Score = 138 bits (295), Expect(3) = 9e-042
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +2
Query: 501 KFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAPPETL 322
KFPD+PAVS+ ARDLIRGLLVKEPE+RLGS +GA EIKRHPFF+GLNWALIRWTAPPET
Sbjct: 2 KFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPPETP 181
Query: 321 KNIDTAPTPVTTRKKKE 271
K+I A T +K+
Sbjct: 182 KSIVEASTLTVAVARKK 232
Score = 123 bits (263), Expect(3) = 2e-039
Identities = 55/68 (80%), Positives = 57/68 (83%)
Frame = +2 / -3
Query: 299 VGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKL 478
V A +M F VSGGAV RIKAQFRP KKGCRLIS AP EPSR SGSFTS+PLIRSRAW L
Sbjct: 204 VEASTMLFGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*L 25
Query: 479 TAGLSGNF 502
TAGLSGNF
Sbjct: 24 TAGLSGNF 1
Score = 100 bits (212), Expect(3) = 9e-027
Identities = 41/63 (65%), Positives = 48/63 (76%)
Frame = +1 / -2
Query: 313 NVLQGLWWCGPPDQGPVQAFKEGMPLNLSGSSRRAKPVLWLFHKQPSDQISSVEAYSWII 492
+ +GL C P DQGPVQA +EGMPL+L S RA PVLWL HKQPSDQI+S+ A+SW I
Sbjct: 190 DAFRGLRRCSPTDQGPVQALEEGMPLDLGSSFPRA*PVLWLLHKQPSDQIASLVAHSWAI 11
Query: 493 REL 501
REL
Sbjct: 10 REL 2
Score = 97.7 bits (207), Expect(3) = 3e-034
Identities = 46/63 (73%), Positives = 49/63 (77%)
Frame = -2 / +1
Query: 502 EVP**SSCKLPRSRSDQRAACERARVPAWLVERSH*D*AASLL*RPELGLDPVDRTTRDP 323
EVP** SC+LP SRSDQR ACE AR PA L ERS D AASLL RPELGLDP+D T DP
Sbjct: 1 EVP**PSCELPGSRSDQRVACEGARAPARLEERSCRDQAASLLPRPELGLDPLDCTAGDP 180
Query: 322 EEH 314
E+H
Sbjct: 181 EKH 189
Score = 60.2 bits (125), Expect(3) = 3e-034
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / +2
Query: 300 TPVTTRKKKEGKCLEFRLNGDDIEFELF* 214
T RKKKEGKCLEFR+NGDDIEFELF*
Sbjct: 209 TVAVARKKKEGKCLEFRMNGDDIEFELF* 295
Score = 43.2 bits (88), Expect(3) = 9e-042
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +3
Query: 81 KIGC*ACNFMPC*YHQILED 22
K+GC ACNF+PC*YHQI ++
Sbjct: 480 KVGCWACNFIPC*YHQISDE 539
Score = 40.0 bits (81), Expect(3) = 2e-039
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +2 / -2
Query: 23 SSNI*WY*QGIKLQA*QPILPYFPTMTNFQQKT 121
SS+I*WY*QGIKLQA P L + T ++Q T
Sbjct: 538 SSDI*WY*QGIKLQAQHPTLLSYSTSQHWQVTT 440
Score = 38.2 bits (77), Expect(3) = 2e-039
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / -2
Query: 214 LKELELDVVTIQPEFQTFAFLFLAC 288
L+EL+LDVV++ PE + AFL L C
Sbjct: 295 LEELKLDVVSVHPELEALAFLLLPC 221
Score = 34.1 bits (68), Expect(3) = 9e-027
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1 / -1
Query: 31 YLMVLTRHKVTGLTANLTLL 90
YLMVLTR+KVTG T +LT L
Sbjct: 530 YLMVLTRNKVTGPTPDLTQL 471
Score = 28.1 bits (55), Expect(3) = 9e-042
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2 / +1
Query: 286 TQEKGRQMSGIPAEW*RHRV 227
T+E+GRQ+ +P E RHRV
Sbjct: 223 TEEEGRQVPRVPDERRRHRV 282
Score = 25.8 bits (50), Expect(3) = 3e-034
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 83 VRLAVKPVTLCLVNTI 36
VR V PVTL LVNTI
Sbjct: 478 VRSGVGPVTLFLVNTI 525
Score = 24.4 bits (47), Expect(3) = 9e-027
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2 / -3
Query: 260 RHLPSFFLRVVTGV 301
RHLPSFF R V
Sbjct: 249 RHLPSFFFRATATV 208
>gb|AJ432746.1|AJ432746 AJ432746 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200023G10F1, mRNA sequence
Length = 353
Score = 146 bits (314), Expect(2) = 2e-037
Identities = 60/81 (74%), Positives = 68/81 (83%)
Frame = -3 / +2
Query: 513 SQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAP 334
SQGLKFPD+PAVS+ ARDLIRGLLVKEPE+RLGS +GA EIKRHPFF+GLNWALIRWTAP
Sbjct: 2 SQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAP 181
Query: 333 PETLKNIDTAPTPVTTRKKKE 271
PET K+I A T +K+
Sbjct: 182 PETPKSIVEASTLTVAVARKK 244
Score = 126 bits (270), Expect(2) = 2e-034
Identities = 56/70 (80%), Positives = 58/70 (82%)
Frame = +2 / -3
Query: 299 VGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKL 478
V A +M F VSGGAV RIKAQFRP KKGCRLIS AP EPSR SGSFTS+PLIRSRAW L
Sbjct: 216 VEASTMLFGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*L 37
Query: 479 TAGLSGNFKP 508
TAGLSGNF P
Sbjct: 36 TAGLSGNFSP 7
Score = 103 bits (220), Expect(2) = 2e-023
Identities = 43/66 (65%), Positives = 50/66 (75%)
Frame = +1 / -2
Query: 313 NVLQGLWWCGPPDQGPVQAFKEGMPLNLSGSSRRAKPVLWLFHKQPSDQISSVEAYSWII 492
+ +GL C P DQGPVQA +EGMPL+L S RA PVLWL HKQPSDQI+S+ A+SW I
Sbjct: 202 DAFRGLRRCSPTDQGPVQALEEGMPLDLGSSFPRA*PVLWLLHKQPSDQIASLVAHSWAI 23
Query: 493 RELQAL 510
RELQ L
Sbjct: 22 RELQPL 5
Score = 100 bits (212), Expect(2) = 5e-033
Identities = 47/65 (72%), Positives = 50/65 (76%)
Frame = -2 / +1
Query: 508 GLEVP**SSCKLPRSRSDQRAACERARVPAWLVERSH*D*AASLL*RPELGLDPVDRTTR 329
G EVP** SC+LP SRSDQR ACE AR PA L ERS D AASLL RPELGLDP+D T
Sbjct: 7 GAEVP**PSCELPGSRSDQRVACEGARAPARLEERSCRDQAASLLPRPELGLDPLDCTAG 186
Query: 328 DPEEH 314
DPE+H
Sbjct: 187 DPEKH 201
Score = 60.2 bits (125), Expect(2) = 5e-033
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / +2
Query: 300 TPVTTRKKKEGKCLEFRLNGDDIEFELF* 214
T RKKKEGKCLEFR+NGDDIEFELF*
Sbjct: 221 TVAVARKKKEGKCLEFRMNGDDIEFELF* 307
Score = 38.2 bits (77), Expect(2) = 2e-034
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / -2
Query: 214 LKELELDVVTIQPEFQTFAFLFLAC 288
L+EL+LDVV++ PE + AFL L C
Sbjct: 307 LEELKLDVVSVHPELEALAFLLLPC 233
Score = 28.1 bits (55), Expect(2) = 2e-037
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2 / +1
Query: 286 TQEKGRQMSGIPAEW*RHRV 227
T+E+GRQ+ +P E RHRV
Sbjct: 235 TEEEGRQVPRVPDERRRHRV 294
Score = 24.4 bits (47), Expect(2) = 2e-023
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2 / -3
Query: 260 RHLPSFFLRVVTGV 301
RHLPSFF R V
Sbjct: 261 RHLPSFFFRATATV 220
>gb|CB874708.1|CB874708 HX06B10w HX Hordeum vulgare subsp. vulgare cDNA clone HX06B10
3-PRIME, mRNA sequence
Length = 585
Score = 154 bits (331), Expect = 4e-037
Identities = 63/89 (70%), Positives = 71/89 (79%)
Frame = -3 / -2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+G TPFKG GN TL NVI Q L+FP+ P VSF ARDLIRGLLVKEP+ RLG RGAT
Sbjct: 542 LLFGXTPFKGSGNRATLFNVIGQPLRFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGAT 363
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNID 310
EIK+HPFFEG+NWALIR +PPE K +D
Sbjct: 362 EIKQHPFFEGVNWALIRCASPPEVPKPVD 276
Score = 100 bits (213), Expect = 7e-021
Identities = 48/88 (54%), Positives = 55/88 (62%)
Frame = +2 / +1
Query: 305 AVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTA 484
++S F SGG RI AQF PSK GC ISVAP +P+R GS TS PLI+S A KLT
Sbjct: 271 SISTGFGTSGGLAQRINAQFTPSKNGCCFISVAPRLQPNRCWGSLTSRPLIKSLAEKLTT 450
Query: 485 GLSGNFKPCEITFESVSSLPGPLNGVLP 568
G SG +T SV+ LP PL GVLP
Sbjct: 451 GYSGKRNG*PMTLNSVARLPEPLKGVLP 534
>gb|AL510395.1|AL510395 AL510395 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04M17u 3',
mRNA sequence
Length = 640
Score = 105 bits (225), Expect(4) = 3e-036
Identities = 43/61 (70%), Positives = 49/61 (80%)
Frame = -3 / -3
Query: 453 RGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTPVTTRKKK 274
RGLLVKEPE+RLGS +GA EIKRHPFF+GLNWALIRWTAPPET K+I A T +K
Sbjct: 506 RGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPPETPKSIVEASTLTVAVARK 327
Query: 273 E 271
+
Sbjct: 326 K 324
Score = 89.5 bits (189), Expect(4) = 1e-033
Identities = 40/52 (76%), Positives = 42/52 (80%)
Frame = +2 / +1
Query: 299 VGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPL 454
V A +M F VSGGAV RIKAQFRP KKGCRLIS AP EPSR SGSFTS+PL
Sbjct: 352 VEASTMLFGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPL 507
Score = 73.9 bits (155), Expect(4) = 1e-022
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = +1 / +3
Query: 313 NVLQGLWWCGPPDQGPVQAFKEGMPLNLSGSSRRAKPVLWLFHKQPS 453
+ +GL C P DQGPVQA +EGMPL+L S RA PVLWL HKQPS
Sbjct: 366 DAFRGLRRCSPTDQGPVQALEEGMPLDLGSSFPRA*PVLWLLHKQPS 506
Score = 70.7 bits (148), Expect(5) = 4e-031
Identities = 33/47 (70%), Positives = 35/47 (74%)
Frame = -2 / -2
Query: 454 QRAACERARVPAWLVERSH*D*AASLL*RPELGLDPVDRTTRDPEEH 314
QR ACE AR PA L ERS D AASLL RPELGLDP+D T DPE+H
Sbjct: 507 QRVACEGARAPARLEERSCRDQAASLLPRPELGLDPLDCTAGDPEKH 367
Score = 60.2 bits (125), Expect(5) = 4e-031
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / -3
Query: 300 TPVTTRKKKEGKCLEFRLNGDDIEFELF* 214
T RKKKEGKCLEFR+NGDDIEFELF*
Sbjct: 347 TVAVARKKKEGKCLEFRMNGDDIEFELF* 261
Score = 43.2 bits (88), Expect(4) = 3e-036
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / -1
Query: 81 KIGC*ACNFMPC*YHQILED 22
K+GC ACNF+PC*YHQI ++
Sbjct: 76 KVGCCACNFIPC*YHQISDE 17
Score = 40.0 bits (81), Expect(4) = 1e-033
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +2 / +3
Query: 23 SSNI*WY*QGIKLQA*QPILPYFPTMTNFQQKT 121
SS+I*WY*QGIKLQA P L + T ++Q T
Sbjct: 18 SSDI*WY*QGIKLQAQHPTLLSYSTSQHWQVTT 116
Score = 38.2 bits (77), Expect(4) = 1e-033
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / +3
Query: 214 LKELELDVVTIQPEFQTFAFLFLAC 288
L+EL+LDVV++ PE + AFL L C
Sbjct: 261 LEELKLDVVSVHPELEALAFLLLPC 335
Score = 35.0 bits (70), Expect(4) = 1e-022
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1 / +2
Query: 31 YLMVLTRHKVTGLTANLTLL 90
YLMVLTR+KVTG T +LT L
Sbjct: 26 YLMVLTRNKVTGTTPDLTQL 85
Score = 31.3 bits (62), Expect(4) = 1e-033
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2 / +2
Query: 455 IRSRAWKLTAGLSGNFKP 508
IRSRAW LTAGLS +P
Sbjct: 509 IRSRAW*LTAGLSRELQP 562
Score = 30.9 bits (61), Expect(4) = 3e-036
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2 / -1
Query: 508 GLEVP**SSCKLPRSRSDQRAACERAR 428
GL+ P** SC+LP SRSD R++
Sbjct: 562 GLKFP**PSCELPGSRSDPEGCL*RSQ 482
Score = 28.1 bits (55), Expect(4) = 1e-022
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1 / +1
Query: 436 FHKQPSDQISSVEAYSWIIRELQA 507
F P DQI+S+ A+SW I+ A
Sbjct: 490 FTSNPLDQIASLVAHSWAIKGTSA 561
Score = 28.1 bits (55), Expect(4) = 3e-036
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2 / -2
Query: 286 TQEKGRQMSGIPAEW*RHRV 227
T+E+GRQ+ +P E RHRV
Sbjct: 333 TEEEGRQVPRVPDERRRHRV 274
Score = 27.6 bits (54), Expect(5) = 4e-031
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3 / -2
Query: 516 ISQGLKFPDNPAVSFHARDLIR 451
+++G D+PAVS+ ARDLI+
Sbjct: 570 LTRG*SSLDSPAVSYQARDLIQ 505
Score = 25.8 bits (50), Expect(5) = 4e-031
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1 / -2
Query: 83 VRLAVKPVTLCLVNTI 36
VR V PVTL LVNTI
Sbjct: 78 VRSGVVPVTLFLVNTI 31
Score = 24.4 bits (47), Expect(4) = 1e-022
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2 / +1
Query: 260 RHLPSFFLRVVTGV 301
RHLPSFF R V
Sbjct: 307 RHLPSFFFRATATV 348
Score = 22.1 bits (42), Expect(5) = 4e-031
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / -3
Query: 43 IPSNIRRQKKKK 8
IPS+IR +KKKK
Sbjct: 38 IPSDIR*KKKKK 3
>gb|BQ660212.1|BQ660212 HI01I09w HI Hordeum vulgare subsp. vulgare cDNA clone HI01I09
3-PRIME, mRNA sequence
Length = 677
Score = 151 bits (324), Expect = 3e-036
Identities = 60/100 (60%), Positives = 75/100 (75%)
Frame = -3 / -3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P V F ARDLIRGLL+KEP++RL RGAT
Sbjct: 576 LLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVGFAARDLIRGLLIKEPQHRLAYKRGAT 397
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTPVTTRKK 277
EIK+HPFFEG+NWALIR PP+ K ++ +T +K
Sbjct: 396 EIKQHPFFEGVNWALIRCATPPDIPKPVEIPRPGASTSQK 277
>gb|BU995645.1|BU995645 HM10O13r HM Hordeum vulgare subsp. vulgare cDNA clone HM10O13
5-PRIME, mRNA sequence
Length = 617
Score = 151 bits (324), Expect = 3e-036
Identities = 60/100 (60%), Positives = 75/100 (75%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P V F ARDLIRGLL+KEP++RL RGAT
Sbjct: 81 LLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVGFAARDLIRGLLIKEPQHRLAYKRGAT 260
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTPVTTRKK 277
EIK+HPFFEG+NWALIR PP+ K ++ +T +K
Sbjct: 261 EIKQHPFFEGVNWALIRCATPPDIPKPVEIPRPGASTSQK 380
>gb|CB881798.1|CB881798 HM10O13w HM Hordeum vulgare subsp. vulgare cDNA clone HM10O13
3-PRIME, mRNA sequence
Length = 589
Score = 141 bits (302), Expect = 4e-033
Identities = 56/95 (58%), Positives = 70/95 (73%)
Frame = -3 / -2
Query: 561 TPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRH 382
TPFKG GN TL NV+ Q L+FP++P V F ARDLIRGLL+KEP++RL RGATEIK+H
Sbjct: 588 TPFKGSGNRATLFNVVGQPLRFPESPVVGFAARDLIRGLLIKEPQHRLAYKRGATEIKQH 409
Query: 381 PFFEGLNWALIRWTAPPETLKNIDTAPTPVTTRKK 277
PFFEG+NWALIR PP+ K ++ +T +K
Sbjct: 408 PFFEGVNWALIRCATPPDIPKPVEIPRPGASTSQK 304
>gb|BF622824.2|BF622824 HVSMEa0009C21f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009C21f, mRNA sequence
Length = 721
Score = 138 bits (295), Expect = 3e-032
Identities = 54/78 (69%), Positives = 63/78 (80%)
Frame = -3 / +3
Query: 561 TPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRH 382
TPFKG GN TL NV+ Q LKFP++P+ S+ RDLIRGLL KEP+ RLG RGATEIK+H
Sbjct: 3 TPFKGSGNRATLFNVVGQQLKFPESPSTSYAGRDLIRGLLAKEPQQRLGVKRGATEIKQH 182
Query: 381 PFFEGLNWALIRWTAPPE 328
PFFEG+NWALIR + PPE
Sbjct: 183 PFFEGVNWALIRCSTPPE 236
>gb|BQ663490.1|BQ663490 HU02N24u HU Hordeum vulgare subsp. vulgare cDNA clone HU02N24
3-PRIME, mRNA sequence
Length = 488
Score = 100 bits (214), Expect(3) = 6e-031
Identities = 41/59 (69%), Positives = 47/59 (79%)
Frame = -3 / -3
Query: 447 LLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTPVTTRKKKE 271
LLVKEPE+RLGS +GA EIKRHPFF+GLNWALIRWTAPPET K+I A T +K+
Sbjct: 486 LLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPPETPKSIVEASTLTVAVARKK 310
Score = 84.5 bits (178), Expect(3) = 4e-028
Identities = 38/50 (76%), Positives = 40/50 (80%)
Frame = +2 / +2
Query: 299 VGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSS 448
V A +M F VSGGAV RIKAQFRP KKGCRLIS AP EPSR SGSFTS+
Sbjct: 338 VEASTMLFGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSN 487
Score = 66.1 bits (138), Expect(3) = 5e-025
Identities = 31/44 (70%), Positives = 33/44 (75%)
Frame = -2 / -2
Query: 445 ACERARVPAWLVERSH*D*AASLL*RPELGLDPVDRTTRDPEEH 314
ACE AR PA L ERS D AASLL RPELGLDP+D T DPE+H
Sbjct: 484 ACEGARAPARLEERSCRDQAASLLPRPELGLDPLDCTAGDPEKH 353
Score = 60.2 bits (125), Expect(3) = 5e-025
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / -3
Query: 300 TPVTTRKKKEGKCLEFRLNGDDIEFELF* 214
T RKKKEGKCLEFR+NGDDIEFELF*
Sbjct: 333 TVAVARKKKEGKCLEFRMNGDDIEFELF* 247
Score = 43.2 bits (88), Expect(3) = 6e-031
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / -1
Query: 81 KIGC*ACNFMPC*YHQILED 22
K+GC ACNF+PC*YHQI ++
Sbjct: 62 KVGCCACNFIPC*YHQISDE 3
Score = 40.0 bits (81), Expect(3) = 4e-028
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +2 / +1
Query: 23 SSNI*WY*QGIKLQA*QPILPYFPTMTNFQQKT 121
SS+I*WY*QGIKLQA P L + T ++Q T
Sbjct: 4 SSDI*WY*QGIKLQAQHPTLLSYSTSQHWQGTT 102
Score = 38.2 bits (77), Expect(3) = 4e-028
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / +1
Query: 214 LKELELDVVTIQPEFQTFAFLFLAC 288
L+EL+LDVV++ PE + AFL L C
Sbjct: 247 LEELKLDVVSVHPELEALAFLLLPC 321
Score = 28.1 bits (55), Expect(3) = 6e-031
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2 / -2
Query: 286 TQEKGRQMSGIPAEW*RHRV 227
T+E+GRQ+ +P E RHRV
Sbjct: 319 TEEEGRQVPRVPDERRRHRV 260
Score = 25.8 bits (50), Expect(3) = 5e-025
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1 / -2
Query: 83 VRLAVKPVTLCLVNTI 36
VR V PVTL LVNTI
Sbjct: 64 VRSGVVPVTLFLVNTI 17
>gb|AJ462548.1|AJ462548 AJ462548 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081A03F1, mRNA sequence
Length = 360
Score = 129 bits (276), Expect = 1e-029
Identities = 53/74 (71%), Positives = 60/74 (81%)
Frame = -3 / +1
Query: 531 TLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWAL 352
TL NVI Q L+FP+ P VSF ARDLIRGLLVKEP+ RLG RGATEIK+HPFFEG+NWAL
Sbjct: 4 TLFNVIGQPLRFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWAL 183
Query: 351 IRWTAPPETLKNID 310
IR +PPE K +D
Sbjct: 184 IRCASPPEVPKPVD 225
>gb|BG415060.1|BG415060 HVSMEk0004P24f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004P24f, mRNA sequence
Length = 632
Score = 126 bits (270), Expect = 9e-029
Identities = 49/78 (62%), Positives = 61/78 (78%)
Frame = -3 / +3
Query: 543 GNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGL 364
GN TL NV+ Q L+FP++P V F ARDLIRGLL+KEP++RL RGATEIK+HPFFEG+
Sbjct: 6 GNRATLFNVVGQPLRFPESPVVGFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGV 185
Query: 363 NWALIRWTAPPETLKNID 310
NWALIR PP+ K ++
Sbjct: 186 NWALIRCATPPDIPKPVE 239
>gb|CB875785.1|CB875785 HX09F12w HX Hordeum vulgare subsp. vulgare cDNA clone HX09F12
3-PRIME, mRNA sequence
Length = 660
Score = 122 bits (262), Expect = 1e-027
Identities = 47/73 (64%), Positives = 61/73 (83%)
Frame = -3 / -1
Query: 528 LSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALI 349
L NV+ Q L+FP++P VSF ARD+IRGLLVK+P++RLG RGATEIK+HPFFEG+NWALI
Sbjct: 660 LFNVVGQPLRFPESPLVSFSARDMIRGLLVKDPQHRLGHKRGATEIKQHPFFEGVNWALI 481
Query: 348 RWTAPPETLKNID 310
R +PP+ K ++
Sbjct: 480 RCASPPDIPKPVE 442
>gb|BE421430.1|BE421430 HWM009.C03 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.C03, mRNA sequence
Length = 832
Score = 108 bits (231), Expect = 2e-023
Identities = 41/83 (49%), Positives = 60/83 (72%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G + T +N++ + ++FP + +VS AR LI LL ++P R+GS G+
Sbjct: 308 MLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSN 487
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
EIK+HPFF G+NWAL+R TAPP+
Sbjct: 488 EIKQHPFFRGINWALVRGTAPPK 556
>gb|AV919193.1|AV919193 AV919193 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o22 3', mRNA sequence
Length = 586
Score = 108 bits (231), Expect = 2e-023
Identities = 41/83 (49%), Positives = 60/83 (72%)
Frame = -3 / -3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G + T +N++ + ++FP + +VS AR LI LL ++P R+GS G+
Sbjct: 551 MLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSN 372
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
EIK+HPFF G+NWAL+R TAPP+
Sbjct: 371 EIKQHPFFRGINWALVRGTAPPK 303
>gb|AV926878.1|AV926878 AV926878 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24k23 5', mRNA sequence
Length = 703
Score = 108 bits (231), Expect = 2e-023
Identities = 41/83 (49%), Positives = 60/83 (72%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G + T +N++ + ++FP + +VS AR LI LL ++P R+GS G+
Sbjct: 247 MLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSN 426
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
EIK+HPFF G+NWAL+R TAPP+
Sbjct: 427 EIKQHPFFRGINWALVRGTAPPK 495
>gb|BU997959.1|BU997959 HI09I16r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I16
5-PRIME, mRNA sequence
Length = 665
Score = 108 bits (231), Expect = 2e-023
Identities = 41/83 (49%), Positives = 60/83 (72%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G + T +N++ + ++FP + +VS AR LI LL ++P R+GS G+
Sbjct: 263 MLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSN 442
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
EIK+HPFF G+NWAL+R TAPP+
Sbjct: 443 EIKQHPFFRGINWALVRGTAPPK 511
>gb|AV832731.1|AV832731 AV832731 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal3j22, mRNA
sequence
Length = 476
Score = 106 bits (226), Expect = 1e-022
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T N++ + L FP + VS A+ LI GLL ++P R+GS+ GA
Sbjct: 78 MLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGAN 257
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IK HPFFE + W LIR +PPE
Sbjct: 258 DIKEHPFFEDIYWPLIRCMSPPE 326
>gb|BJ544669.1|BJ544669 BJ544669 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34b18 5', mRNA sequence
Length = 639
Score = 106 bits (226), Expect = 1e-022
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T N++ + L FP + VS A+ LI GLL ++P R+GS+ GA
Sbjct: 135 MLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGAN 314
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IK HPFFE + W LIR +PPE
Sbjct: 315 DIKEHPFFEDIYWPLIRCMSPPE 383
>gb|BJ546140.1|BJ546140 BJ546140 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34b18 3', mRNA sequence
Length = 719
Score = 106 bits (226), Expect = 1e-022
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3 / -3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T N++ + L FP + VS A+ LI GLL ++P R+GS+ GA
Sbjct: 633 MLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGAN 454
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IK HPFFE + W LIR +PPE
Sbjct: 453 DIKEHPFFEDIYWPLIRCMSPPE 385
>gb|BJ546986.1|BJ546986 BJ546986 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p17 5', mRNA sequence
Length = 624
Score = 106 bits (226), Expect = 1e-022
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T N++ + L FP + VS A+ LI GLL ++P R+GS+ GA
Sbjct: 95 MLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGAN 274
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IK HPFFE + W LIR +PPE
Sbjct: 275 DIKEHPFFEDIYWPLIRCMSPPE 343
>gb|BJ547677.1|BJ547677 BJ547677 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal34l02 5', mRNA sequence
Length = 616
Score = 106 bits (226), Expect = 1e-022
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T N++ + L FP + VS A+ LI GLL ++P R+GS+ GA
Sbjct: 82 MLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGAN 261
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IK HPFFE + W LIR +PPE
Sbjct: 262 DIKEHPFFEDIYWPLIRCMSPPE 330
>gb|BJ547950.1|BJ547950 BJ547950 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f06 3', mRNA sequence
Length = 671
Score = 106 bits (226), Expect = 1e-022
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T N++ + L FP + VS A+ LI GLL ++P R+GS+ GA
Sbjct: 590 MLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGAN 411
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IK HPFFE + W LIR +PPE
Sbjct: 410 DIKEHPFFEDIYWPLIRCMSPPE 342
>gb|BJ548315.1|BJ548315 BJ548315 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p18 3', mRNA sequence
Length = 654
Score = 106 bits (226), Expect = 1e-022
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3 / -2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T N++ + L FP + VS A+ LI GLL ++P R+GS+ GA
Sbjct: 575 MLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGAN 396
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IK HPFFE + W LIR +PPE
Sbjct: 395 DIKEHPFFEDIYWPLIRCMSPPE 327
>gb|BJ546987.1|BJ546987 BJ546987 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p18 5', mRNA sequence
Length = 441
Score = 105 bits (224), Expect = 2e-022
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T N++ + L FP + VS A+ LI GLL ++P R+GS+ GA
Sbjct: 70 MLYGRTPFRGKNRKKTFYNMLHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGAN 249
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IK HPFFE + W LIR +PPE
Sbjct: 250 DIKEHPFFEDIYWPLIRCMSPPE 318
>gb|BF626879.2|BF626879 HVSMEb0001J09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001J09f, mRNA sequence
Length = 780
Score = 105 bits (223), Expect = 3e-022
Identities = 40/81 (49%), Positives = 58/81 (71%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G + T +N++ + ++FP + +VS AR LI LL ++P R+GS G+
Sbjct: 307 MLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSN 486
Query: 396 EIKRHPFFEGLNWALIRWTAP 334
EIK+HPFF G+NWAL+R TAP
Sbjct: 487 EIKQHPFFRGINWALVRGTAP 549
>gb|AL510339.1|AL510339 AL510339 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04K03u 3',
mRNA sequence
Length = 649
Score = 67.0 bits (140), Expect(3) = 2e-021
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -3 / -1
Query: 420 LGSSRGATEIKRHPFFEGLNWALIRWTAPPET 325
LG+ RGA EIK+HPFFEGLNWALIR APPET
Sbjct: 487 LGTLRGAAEIKQHPFFEGLNWALIRSVAPPET 392
Score = 37.3 bits (75), Expect(3) = 2e-021
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = -3 / -3
Query: 477 SFHARDLIRGLLVKEPEYRLGS 412
S +A+DLI GLLVKEPE RLG+
Sbjct: 545 SSNAKDLIGGLLVKEPENRLGN 480
Score = 34.5 bits (69), Expect(3) = 2e-021
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -3 / -1
Query: 300 TPVTTRKKKEGKCLEFR 250
T T RKKKEGKCL+FR
Sbjct: 373 TLATVRKKKEGKCLDFR 323
>gb|BJ467740.1|BJ467740 BJ467740 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29j23 3', mRNA sequence
Length = 507
Score = 100 bits (214), Expect = 5e-021
Identities = 39/81 (48%), Positives = 54/81 (66%)
Frame = -3 / -1
Query: 570 YGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEI 391
YG PF G T N++ + ++FP + +VS AR LI LL ++P R+GS G+ EI
Sbjct: 507 YGXXPFXGKXXXRTFXNILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEI 328
Query: 390 KRHPFFEGLNWALIRWTAPPE 328
K+HPFF G+NWAL+R TAPP+
Sbjct: 327 KQHPFFRGINWALVRGTAPPK 265
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 243,557,000
Number of Sequences: 312970
Number of extensions: 3565393
Number of successful extensions: 46220
Number of sequences better than 1.0e-020: 46
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 5980755969
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)