TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623104.2.3
(1540 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow st... 181 2e-076
gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow st... 133 8e-062
gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow st... 236 2e-061
gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow st... 125 4e-052
gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow st... 120 6e-052
gb|BM442145.2|BM442145 EBan01_SQ002_F12_R anther, yellow st... 177 1e-043
gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow st... 125 3e-039
gb|BQ753380.1|BQ753380 EBan01_SQ004_B18_R anther, yellow st... 134 9e-037
gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. v... 138 3e-034
gb|BQ464404.1|BQ464404 HF02C24r HF Hordeum vulgare subsp. v... 139 3e-032
gb|BI957299.1|BI957299 HVSMEn0008L17f Hordeum vulgare rachi... 119 5e-026
>gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_G09 5', mRNA sequence
Length = 588
Score = 181 bits (390), Expect(2) = 2e-076
Identities = 72/90 (80%), Positives = 79/90 (87%)
Frame = +2 / +3
Query: 776 GVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYEDAASVLTASKIHY 955
GVTCGPGHGISIGSLGRYKDEKDVTDI+VK+C K + NG+RIK+YED+ S L ASKI Y
Sbjct: 3 GVTCGPGHGISIGSLGRYKDEKDVTDIHVKNCVFKGSTNGLRIKSYEDSKSPLVASKISY 182
Query: 956 ENIKMEDSGYPIIIDMKYCPNKLCTANGAS 1045
ENIKM+DSGYPIIID KYCPNKLCTA G S
Sbjct: 183 ENIKMDDSGYPIIIDQKYCPNKLCTAKGDS 272
Score = 143 bits (307), Expect(2) = 1e-054
Identities = 65/90 (72%), Positives = 73/90 (81%)
Frame = -2 / -3
Query: 1044 EAPLAVHNLLGQYFMSMMMG*PESSILIFS*WILEAVSTEAASSYALMRTPLAVFLSVQS 865
E+PLAV +LLGQYF SMMMG*PESSIL+FS* IL+A + SSY LMR PL L+ Q
Sbjct: 271 ESPLAVQSLLGQYF*SMMMG*PESSILMFS*LILDATRGDLESSYDLMRRPLVDPLNTQF 92
Query: 864 LTLISVTSFSSLYRPRLPMLMPWPGPQVTP 775
LT +SVTSFSSLY PRLP+LMPWPGPQVTP
Sbjct: 91 LTWMSVTSFSSLYLPRLPILMPWPGPQVTP 2
Score = 125 bits (268), Expect(2) = 2e-076
Identities = 54/73 (73%), Positives = 59/73 (80%)
Frame = +2 / +3
Query: 1040 ASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNA 1219
+S+VTVKDVTFKNITGTSSTPEAV+LLCS K PC GVTM DV I+YSG NNKTMAVC N
Sbjct: 270 SSRVTVKDVTFKNITGTSSTPEAVSLLCSDKKPCEGVTMSDVKIEYSGKNNKTMAVCTNV 449
Query: 1220 KGSAKGCLKELAC 1258
K +A G K AC
Sbjct: 450 KVTATGVDKANAC 488
Score = 91.3 bits (193), Expect(2) = 1e-054
Identities = 44/72 (61%), Positives = 50/72 (69%)
Frame = -2 / -3
Query: 1257 HASSLRQPLALPLAFLHTAXXXXXXXXXXXLTSSMVTPVHGILAEQSRLTASGVEEVPVM 1078
HA +L P+A+ L + TA LTS +VTP G L+EQSRLTASGVEEVPVM
Sbjct: 487 HALALSTPVAVTLTLVQTAMVLLFLPEYSILTSDIVTPSQGFLSEQSRLTASGVEEVPVM 308
Query: 1077 FLKVTSLTVTLE 1042
FLKVTSLTVTLE
Sbjct: 307 FLKVTSLTVTLE 272
>gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_F02 5', mRNA sequence
Length = 693
Score = 133 bits (284), Expect(2) = 8e-062
Identities = 53/71 (74%), Positives = 60/71 (84%)
Frame = +2 / +2
Query: 833 DEKDVTDINVKDCTLKKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYC 1012
DEKDVTDI+VK+C K + NG+RIK+YED+ S L ASKI YENIKM+DSGYPIIID KYC
Sbjct: 2 DEKDVTDIHVKNCVFKGSTNGLRIKSYEDSKSPLVASKISYENIKMDDSGYPIIIDQKYC 181
Query: 1013 PNKLCTANGAS 1045
PNKLCTA G S
Sbjct: 182 PNKLCTAKGDS 214
Score = 125 bits (268), Expect(2) = 8e-062
Identities = 54/73 (73%), Positives = 59/73 (80%)
Frame = +2 / +2
Query: 1040 ASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNA 1219
+S+VTVKDVTFKNITGTSSTPEAV+LLCS K PC GVTM DV I+YSG NNKTMAVC N
Sbjct: 212 SSRVTVKDVTFKNITGTSSTPEAVSLLCSDKKPCEGVTMSDVKIEYSGKNNKTMAVCTNV 391
Query: 1220 KGSAKGCLKELAC 1258
K +A G K AC
Sbjct: 392 KVTATGVDKANAC 430
Score = 97.3 bits (206), Expect(2) = 7e-041
Identities = 48/71 (67%), Positives = 55/71 (77%)
Frame = -2 / -1
Query: 1044 EAPLAVHNLLGQYFMSMMMG*PESSILIFS*WILEAVSTEAASSYALMRTPLAVFLSVQS 865
E+PLAV +LLGQYF SMMMG*PESSIL+FS* IL+A + SSY LMR PL L+ Q
Sbjct: 213 ESPLAVQSLLGQYF*SMMMG*PESSILMFS*LILDATRGDLESSYDLMRRPLVDPLNTQF 34
Query: 864 LTLISVTSFSS 832
LT +SVTSFSS
Sbjct: 33 LTWMSVTSFSS 1
Score = 91.3 bits (193), Expect(2) = 7e-041
Identities = 44/72 (61%), Positives = 50/72 (69%)
Frame = -2 / -1
Query: 1257 HASSLRQPLALPLAFLHTAXXXXXXXXXXXLTSSMVTPVHGILAEQSRLTASGVEEVPVM 1078
HA +L P+A+ L + TA LTS +VTP G L+EQSRLTASGVEEVPVM
Sbjct: 429 HALALSTPVAVTLTLVQTAMVLLFLPEYSILTSDIVTPSQGFLSEQSRLTASGVEEVPVM 250
Query: 1077 FLKVTSLTVTLE 1042
FLKVTSLTVTLE
Sbjct: 249 FLKVTSLTVTLE 214
>gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L02 5', mRNA sequence
Length = 377
Score = 236 bits (510), Expect = 2e-061
Identities = 94/124 (75%), Positives = 106/124 (85%)
Frame = +2 / +2
Query: 668 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 847
GIHMGDSS V I +T I VGDDCISIGPG+ +VNI+GVTCGP HGISIGSLGRYKDEKDV
Sbjct: 2 GIHMGDSSNVNIIDTTIAVGDDCISIGPGSKQVNISGVTCGPSHGISIGSLGRYKDEKDV 181
Query: 848 TDINVKDCTLKKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLC 1027
TDI+VK+C K + NG+RIK+YED+ S L ASKI YENIKM+DS YPIIID KYCP+KLC
Sbjct: 182 TDIHVKNCVFKGSTNGLRIKSYEDSKSPLVASKISYENIKMDDSSYPIIIDQKYCPHKLC 361
Query: 1028 TANG 1039
TA G
Sbjct: 362 TAKG 373
Score = 188 bits (406), Expect = 5e-047
Identities = 86/125 (68%), Positives = 97/125 (77%)
Frame = -2 / -3
Query: 1041 APLAVHNLLGQYFMSMMMG*PESSILIFS*WILEAVSTEAASSYALMRTPLAVFLSVQSL 862
+PLAV +L GQYF SMMMG* ESSIL+FS* IL+A + SSY LMR PL L+ Q L
Sbjct: 375 SPLAVQSLWGQYF*SMMMG*LESSILMFS*LILDATRGDLESSYDLMRRPLVDPLNTQFL 196
Query: 861 TLISVTSFSSLYRPRLPMLMPWPGPQVTPVMFTLEVPGPMEMQSSPTPMTVLVMVTPDES 682
T +SVTSFSSLY PRLP+LMPW GPQVTP+M T PGPMEMQSSPT M V +M+T DES
Sbjct: 195 TWMSVTSFSSLYLPRLPILMPWLGPQVTPLMLTCLEPGPMEMQSSPTAMVVSMMLTLDES 16
Query: 681 PMWMP 667
PMWMP
Sbjct: 15 PMWMP 1
>gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_L07 5', mRNA sequence
Length = 436
Score = 125 bits (268), Expect(2) = 4e-052
Identities = 54/73 (73%), Positives = 59/73 (80%)
Frame = +2 / +2
Query: 1040 ASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNA 1219
+S+VTVKDVTFKNITGTSSTPEAV+LLCS K PC GVTM DV I+YSG NNKTMAVC N
Sbjct: 152 SSRVTVKDVTFKNITGTSSTPEAVSLLCSDKKPCEGVTMSDVKIEYSGKNNKTMAVCTNV 331
Query: 1220 KGSAKGCLKELAC 1258
K +A G K AC
Sbjct: 332 KVTATGVDKANAC 370
Score = 100 bits (213), Expect(2) = 4e-052
Identities = 40/51 (78%), Positives = 44/51 (86%)
Frame = +2 / +2
Query: 893 GVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGAS 1045
G+RIK+YED+ S L ASKI YENIKM+DSGYPIIID KYCPNKLCTA G S
Sbjct: 2 GLRIKSYEDSKSPLVASKISYENIKMDDSGYPIIIDQKYCPNKLCTAKGDS 154
Score = 91.3 bits (193), Expect(2) = 7e-035
Identities = 44/72 (61%), Positives = 50/72 (69%)
Frame = -2 / -2
Query: 1257 HASSLRQPLALPLAFLHTAXXXXXXXXXXXLTSSMVTPVHGILAEQSRLTASGVEEVPVM 1078
HA +L P+A+ L + TA LTS +VTP G L+EQSRLTASGVEEVPVM
Sbjct: 369 HALALSTPVAVTLTLVQTAMVLLFLPEYSILTSDIVTPSQGFLSEQSRLTASGVEEVPVM 190
Query: 1077 FLKVTSLTVTLE 1042
FLKVTSLTVTLE
Sbjct: 189 FLKVTSLTVTLE 154
Score = 77.1 bits (162), Expect(2) = 7e-035
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2 / -2
Query: 1044 EAPLAVHNLLGQYFMSMMMG*PESSILIFS*WILEAVSTEAASSYALMRTP 892
E+PLAV +LLGQYF SMMMG*PESSIL+FS* IL+A + SSY LMR P
Sbjct: 153 ESPLAVQSLLGQYF*SMMMG*PESSILMFS*LILDATRGDLESSYDLMRRP 1
>gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E14 5', mRNA sequence
Length = 454
Score = 120 bits (257), Expect(2) = 6e-052
Identities = 53/73 (72%), Positives = 58/73 (79%)
Frame = +2 / +3
Query: 1040 ASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNA 1219
+S+VTVKDVTFKNITGTSSTPEAV+LLCS K P GVTM DV I+YSG NNKTMAVC N
Sbjct: 177 SSRVTVKDVTFKNITGTSSTPEAVSLLCSDKKPYEGVTMSDVKIEYSGKNNKTMAVCTNV 356
Query: 1220 KGSAKGCLKELAC 1258
K +A G K AC
Sbjct: 357 KVTATGVDKANAC 395
Score = 105 bits (223), Expect(2) = 6e-052
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +2 / +3
Query: 878 KKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGAS 1045
K + NG+RIK+YED+ S L ASKI YENIKM+DSGYPIIID KYCPNKLCTA G S
Sbjct: 12 KGSTNGLRIKSYEDSKSPLVASKISYENIKMDDSGYPIIIDQKYCPNKLCTAKGDS 179
Score = 89.5 bits (189), Expect(2) = 7e-035
Identities = 44/72 (61%), Positives = 50/72 (69%)
Frame = -2 / -1
Query: 1257 HASSLRQPLALPLAFLHTAXXXXXXXXXXXLTSSMVTPVHGILAEQSRLTASGVEEVPVM 1078
HA +L P+A+ L + TA LTS +VTP G L+EQSRLTASGVEEVPVM
Sbjct: 394 HALALSTPVAVTLTLVQTAMVLLFLPEYSILTSDIVTPS*GFLSEQSRLTASGVEEVPVM 215
Query: 1077 FLKVTSLTVTLE 1042
FLKVTSLTVTLE
Sbjct: 214 FLKVTSLTVTLE 179
Score = 79.0 bits (166), Expect(2) = 7e-035
Identities = 37/52 (71%), Positives = 42/52 (80%)
Frame = -2 / -1
Query: 1044 EAPLAVHNLLGQYFMSMMMG*PESSILIFS*WILEAVSTEAASSYALMRTPL 889
E+PLAV +LLGQYF SMMMG*PESSIL+FS* IL+A + SSY LMR PL
Sbjct: 178 ESPLAVQSLLGQYF*SMMMG*PESSILMFS*LILDATRGDLESSYDLMRRPL 23
>gb|BM442145.2|BM442145 EBan01_SQ002_F12_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_F12 5', mRNA sequence
Length = 311
Score = 177 bits (381), Expect = 1e-043
Identities = 67/101 (66%), Positives = 84/101 (83%)
Frame = +2 / +3
Query: 416 NLVITGKGKLDGQGPAVWSKNSCVKKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMN 595
NLVITGKG +D QG AVW+KNSC K Y+CKILPNSLV+DF ++ + I+++NSKFFHMN
Sbjct: 6 NLVITGKGSIDRQGKAVWTKNSCQKNYNCKILPNSLVLDFCDDALIESISIINSKFFHMN 185
Query: 596 MYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVI 718
+Y+CK +++KDV V+APGDSPNTDGIHMGDS V I +T I
Sbjct: 186 IYECKGVIVKDVKVSAPGDSPNTDGIHMGDSFNVNIIDTTI 308
Score = 120 bits (256), Expect = 3e-026
Identities = 59/100 (59%), Positives = 66/100 (66%)
Frame = -2 / -2
Query: 717 MTVLVMVTPDESPMWMPSVLGLSPGAVTLTSLISMSLHLYMFMWKNLELSSVIPDTSPLF 538
M V +M+T +ESPMWMPSVLGLSPGA+T TSL LH MFMWKNLEL + S
Sbjct: 307 MVVSMMLTLNESPMWMPSVLGLSPGALTFTSLTITPLHS*MFMWKNLELMIEMLSMSASS 128
Query: 537 TKSITSELGRILQSYFLTQEFLLHTAGPCPSSFPLPVMTR 418
KS T E G+ILQ F Q FL+ TA P S PLPVMTR
Sbjct: 127 QKSSTKEFGKILQL*FFWQLFLVQTALP*RSIDPLPVMTR 8
>gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_C11 5', mRNA sequence
Length = 647
Score = 125 bits (268), Expect(2) = 3e-039
Identities = 54/73 (73%), Positives = 59/73 (80%)
Frame = +2 / +1
Query: 1040 ASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNA 1219
+S+VTVKDVTFKNITGTSSTPEAV+LLCS K PC GVTM DV I+YSG NNKTMAVC N
Sbjct: 73 SSRVTVKDVTFKNITGTSSTPEAVSLLCSDKKPCEGVTMSDVKIEYSGKNNKTMAVCTNV 252
Query: 1220 KGSAKGCLKELAC 1258
K +A G K AC
Sbjct: 253 KVTATGVDKANAC 291
Score = 91.3 bits (193), Expect(2) = 7e-026
Identities = 44/72 (61%), Positives = 50/72 (69%)
Frame = -2 / -1
Query: 1257 HASSLRQPLALPLAFLHTAXXXXXXXXXXXLTSSMVTPVHGILAEQSRLTASGVEEVPVM 1078
HA +L P+A+ L + TA LTS +VTP G L+EQSRLTASGVEEVPVM
Sbjct: 290 HALALSTPVAVTLTLVQTAMVLLFLPEYSILTSDIVTPSQGFLSEQSRLTASGVEEVPVM 111
Query: 1077 FLKVTSLTVTLE 1042
FLKVTSLTVTLE
Sbjct: 110 FLKVTSLTVTLE 75
Score = 57.4 bits (119), Expect(2) = 3e-039
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2 / +1
Query: 971 EDSGYPIIIDMKYCPNKLCTANGAS 1045
+DSGYPIIID KYCPNKLCTA G S
Sbjct: 1 DDSGYPIIIDQKYCPNKLCTAKGDS 75
Score = 46.9 bits (96), Expect(2) = 7e-026
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = -2 / -1
Query: 1044 EAPLAVHNLLGQYFMSMMMG*PES 973
E+PLAV +LLGQYF SMMMG*PES
Sbjct: 74 ESPLAVQSLLGQYF*SMMMG*PES 3
>gb|BQ753380.1|BQ753380 EBan01_SQ004_B18_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_B18 5', mRNA sequence
Length = 431
Score = 134 bits (288), Expect(3) = 9e-037
Identities = 52/62 (83%), Positives = 56/62 (90%)
Frame = +2 / +1
Query: 137 GPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCK 316
GPGG +DI KLGA +GKTDSTKAV+EAWASACGGTGKQTI+IPKGDFL G LNFTGPCK
Sbjct: 142 GPGGEYDIIKLGAKPDGKTDSTKAVEEAWASACGGTGKQTIVIPKGDFLTGALNFTGPCK 321
Query: 317 GD 322
GD
Sbjct: 322 GD 327
Score = 116 bits (247), Expect = 4e-025
Identities = 47/64 (73%), Positives = 51/64 (79%)
Frame = -2 / -1
Query: 321 SPLHGPVKLSGPTRKSPLGMRIVCFPVPPHADAHASCTAFVLSVLPLPEAPNLVMSKDPP 142
SPLHGPVK P RKSPLGM IVC PVPPHA+AHAS TA VLSVLP AP+L+MS PP
Sbjct: 326 SPLHGPVKFRAPVRKSPLGMTIVCLPVPPHAEAHASSTALVLSVLPSGFAPSLMMSYSPP 147
Query: 141 GPDA 130
GP+A
Sbjct: 146 GPEA 135
Score = 29.0 bits (57), Expect(3) = 9e-037
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2 / +1
Query: 389 NWIEILRVDNLVI 427
NWIEI+R+ NLVI
Sbjct: 391 NWIEIMRIKNLVI 429
Score = 29.0 bits (57), Expect(3) = 9e-037
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2 / +1
Query: 323 VTIQVNGNLLATTDLSQY 376
VTI++ GNLLA+ DLS +
Sbjct: 331 VTIKLEGNLLASNDLSMF 384
>gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. vulgare cDNA clone HM10P12
3-PRIME, mRNA sequence
Length = 608
Score = 138 bits (297), Expect(2) = 3e-034
Identities = 56/142 (39%), Positives = 84/142 (59%)
Frame = +2 / +3
Query: 500 CKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHM 679
CK P ++ +D V G+T+ N++ H+ + + + + + + + APGDSPNTDGIH+
Sbjct: 81 CKGAPTAVTIDSCRGVRVRGLTIQNAQQMHLTVSRSRGVRLDGMAIQAPGDSPNTDGIHV 260
Query: 680 GDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 859
+S+ VTIT IG GDDC+SI + V + G+ C PGHGISIGSLG+ V +
Sbjct: 261 AESTAVTITGARIGTGDDCVSISNASFAVKMKGIVCDPGHGISIGSLGQGGSYAAVEGVT 440
Query: 860 VKDCTLKKTANGVRIKAYEDAA 925
+ + + NGVRIK + A
Sbjct: 441 LDGARIARAQNGVRIKTXQGGA 506
Score = 27.2 bits (53), Expect(2) = 3e-034
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2 / +3
Query: 947 IHYENIKMEDSGYPIIIDMKYCPNK 1021
+ + N+ ++ +PIIID YC ++
Sbjct: 522 VRFTNVLVDGVDHPIIIDQFYCDSR 596
>gb|BQ464404.1|BQ464404 HF02C24r HF Hordeum vulgare subsp. vulgare cDNA clone HF02C24
5-PRIME, mRNA sequence
Length = 579
Score = 139 bits (299), Expect = 3e-032
Identities = 58/138 (42%), Positives = 89/138 (64%)
Frame = +2 / +2
Query: 503 KILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMG 682
++ P +L +N V+GIT++NS H+ C+ +L+ D+ +++P +S NTDGIH+
Sbjct: 152 RVKPTALRFYGSSNVVVAGITIVNSSQCHLKFDNCQGVLVHDLTISSPENSLNTDGIHLQ 331
Query: 683 DSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINV 862
+S V+I +T + GDDCISI G S + I V CGPGHGISIG LGR + V+++ V
Sbjct: 332 NSKDVSIHHTNLACGDDCISIQTGCSNIYIHNVNCGPGHGISIGGLGRDNTKACVSNVTV 511
Query: 863 KDCTLKKTANGVRIKAYE 916
+D + +T GVRIK ++
Sbjct: 512 RDVNMFRTMTGVRIKTWQ 565
>gb|BI957299.1|BI957299 HVSMEn0008L17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008L17f, mRNA sequence
Length = 458
Score = 119 bits (254), Expect = 5e-026
Identities = 49/104 (47%), Positives = 66/104 (63%)
Frame = +2 / +1
Query: 512 PNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSS 691
P +L NN V G+ + NS FH C+ + + +++ +P SPNTDGIH+ ++
Sbjct: 52 PVALRFFMSNNVTVQGLKVQNSPEFHFRFDSCRGVRVYSLSIISPALSPNTDGIHVENTQ 231
Query: 692 GVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLG 823
V ITNTV+ GD+C+ IG GT V+I VTCGPGHGI IGSLG
Sbjct: 232 DVLITNTVVSNGDNCVCIGAGTLNVHIENVTCGPGHGIIIGSLG 363
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 669,975,073
Number of Sequences: 312970
Number of extensions: 12145469
Number of successful extensions: 121552
Number of sequences better than 1.0e-020: 12
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 19181962971
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)