TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619423.2.1
(886 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU978006.1|BU978006 HA12G16r HA Hordeum vulgare subsp. v... 393 e-109
gb|CB882717.1|CB882717 HL02K11w HL Hordeum vulgare subsp. v... 386 e-106
gb|BF256845.2|BF256845 HVSMEf0011C19f Hordeum vulgare seedl... 316 4e-096
gb|CB859459.1|CB859459 HI10I05w HI Hordeum vulgare subsp. v... 259 2e-068
gb|BU994209.1|BU994209 HM06C21r HM Hordeum vulgare subsp. v... 256 1e-067
gb|BM444360.1|BM444360 EBem09_SQ004_O20_R embryo, 1 Day ger... 249 2e-065
gb|CB880317.1|CB880317 HM06C21w HM Hordeum vulgare subsp. v... 249 2e-065
gb|CA016620.1|CA016620 HV08A21u HV Hordeum vulgare subsp. v... 246 2e-064
gb|BM815962.1|BM815962 HB108B11_SK.ab1 HB Hordeum vulgare s... 204 2e-064
gb|CB859645.1|CB859645 HI11B21w HI Hordeum vulgare subsp. v... 240 1e-062
gb|CB881920.1|CB881920 HM11E21w HM Hordeum vulgare subsp. v... 240 1e-062
gb|CB880111.1|CB880111 HM05I10w HM Hordeum vulgare subsp. v... 236 2e-061
gb|CB881379.1|CB881379 HM09K05w HM Hordeum vulgare subsp. v... 236 2e-061
gb|AL500666.1|AL500666 AL500666 Hordeum vulgare Barke roots... 207 3e-058
gb|BG417675.1|BG417675 HVSMEk0019B08f Hordeum vulgare testa... 212 2e-054
gb|BM097912.2|BM097912 EBpi03_SQ002_A12_R pistil, 4 DPA, no... 175 3e-043
gb|BU977226.1|BU977226 HA11A22u HA Hordeum vulgare subsp. v... 160 1e-038
gb|BU995236.1|BU995236 HM09K05r HM Hordeum vulgare subsp. v... 155 4e-037
gb|BU977225.1|BU977225 HA11A22r HA Hordeum vulgare subsp. v... 152 3e-036
gb|CD663895.1|CD663895 UCRHV18_07aa08_b1 Drought-stressed D... 149 3e-035
gb|CK125579.1|CK125579 BES1824109b18 BES1824 Hordeum vulgar... 89 3e-031
gb|BU996564.1|BU996564 HM14A08r HM Hordeum vulgare subsp. v... 73 2e-026
gb|AV931360.1|AV931360 AV931360 K. Sato unpublished cDNA li... 72 3e-026
gb|AV926476.1|AV926476 AV926476 K. Sato unpublished cDNA li... 72 3e-026
>gb|BU978006.1|BU978006 HA12G16r HA Hordeum vulgare subsp. vulgare cDNA clone HA12G16
5-PRIME, mRNA sequence
Length = 543
Score = 393 bits (853), Expect = e-109
Identities = 161/173 (93%), Positives = 168/173 (97%)
Frame = +2 / +3
Query: 2 APRFSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATP 181
APRFSTYAVLAAHVW+CVSLAR+L PEQPTKLYCATDGRQ LQPPLP+GYFGNVIFTATP
Sbjct: 24 APRFSTYAVLAAHVWRCVSLARNLAPEQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATP 203
Query: 182 LAEAGKVTSELAEGAAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGL 361
LAEAGKVTS LAEGAAVIQGALDRM +DYC+SALDYLE+QPDLSALVRGAHTFRCPNLGL
Sbjct: 204 LAEAGKVTSGLAEGAAVIQGALDRMTSDYCQSALDYLEMQPDLSALVRGAHTFRCPNLGL 383
Query: 362 TSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAE 520
TSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSA+ DGSLSIAISLQAE
Sbjct: 384 TSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASKDGSLSIAISLQAE 542
Score = 310 bits (671), Expect = 8e-084
Identities = 138/173 (79%), Positives = 141/173 (81%)
Frame = -2 / -3
Query: 519 SACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVSPRFGQR 340
SACNE+AMDRLPS ALGRTNA PSYAMPPGPMNTG P PKSASWIGRRTQLV PR G R
Sbjct: 541 SACNEMAMDRLPSLLALGRTNASPSYAMPPGPMNTGLPQPKSASWIGRRTQLVRPRLGHR 362
Query: 339 KVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAAPSASSLVTLPASASGVAVKMT 160
KVCAP S A+ Q*SL ILSSAPWMTAAPSAS LVTLPASASGVAVKMT
Sbjct: 361 KVCAPRTNADRSGCISR*SRADWQ*SLVILSSAPWMTAAPSASPLVTLPASASGVAVKMT 182
Query: 159 LPKYPSGSGGCSV*RPSVAQYNLVGCSGGRLRARETHFQTCAASTAYVLNRGA 1
PK PSGSGGCS RPSVAQY+LVGCSG RLRARET QTCAASTAYVLNRGA
Sbjct: 181 FPK*PSGSGGCSRCRPSVAQYSLVGCSGARLRARETQRQTCAASTAYVLNRGA 23
Score = 194 bits (419), Expect = 4e-049
Identities = 93/171 (54%), Positives = 110/171 (64%)
Frame = -1 / -2
Query: 520 LSLQRDSNGQAAVAICTWEDKRQTFIRNATWPHEHRPAPSEVSIMDRKAHPAGEP*VRAA 341
L LQRD +GQAAV ED+RQ +R+A HEHRP P+++ ++DR+AHPAGE V A
Sbjct: 542 LRLQRDGDGQAAVLARAREDERQPLVRDAARTHEHRPPPAKIGVVDRQAHPAGEAEVGAP 363
Query: 340 EGMRSTHKC*QIRLKLQXXXXXXXXXXVHPIQCSLDDCCSFCQLTGHLARLSKWCRGEDD 161
E + ST +C*Q+RL LQ HP+ SLDD CSF Q +LA LS+ GEDD
Sbjct: 362 ESVCSTDQC*QVRLHLQVVQG*LAVVASHPV*RSLDDRCSFRQPARNLACLSERGGGEDD 183
Query: 160 IAKVPIW*WRL*RLTAISGAIQLGGLFRR*AACKGDTFPDMCR*HCICAEP 8
I KV W L L+ I GAIQLGGLFR A KGDT PDMC *HCI AEP
Sbjct: 182 IPKVTFWQRGLQPLSPIGGAIQLGGLFRSQVARKGDTAPDMCS*HCIRAEP 30
Score = 157 bits (338), Expect = 7e-038
Identities = 79/171 (46%), Positives = 87/171 (50%)
Frame = +3 / +1
Query: 9 GSAHMQC*RHMSGNVSPLHAAYLLNNPPSCIAPLMAVKRYSLHYQMGTLAMSXXXXXXXX 188
GSA MQC* HMSG VSPL A +L N+PPSCIAP M S Q TL MS
Sbjct: 31 GSARMQC*LHMSGAVSPLRATWLRNSPPSCIAPPMGDNGCSPRCQKVTLGMSSSPPPRSL 210
Query: 189 XXXXXXVSWQKEQQSSREHWIGWXXXXXXXXXXXWSFNRICQHLCVERIPSAART*GSPA 368
W+KEQ+SSRE G W +R CQH VE S A T SPA
Sbjct: 211 RQARLRAGWRKEQRSSRER*TG*LATTANQPWTTWRCSRTCQHWSVEHTLSGAPTSASPA 390
Query: 369 GCAFLSMMLTSDGAGLCSWGQVALRMKVWRLSSQVQMATAACPLLSRCRLS 521
GCA S G G CSW A R + WR SS+ + TAACP SRCR S
Sbjct: 391 GCACRSTTPILAGGGRCSWVLAASRTRGWRSSSRARARTAACPSPSRCRRS 543
Score = 111 bits (236), Expect(2) = 1e-047
Identities = 52/99 (52%), Positives = 64/99 (64%)
Frame = +1 / +2
Query: 220 RSSSHPGSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*L 399
RSS HPGS D RLLP+S LPG + G VS WS + P+P+PR HQLGAP+ P
Sbjct: 242 RSSGHPGSARQDD*RLLPISPGLPGDAAGPVSIGPWSTHFPVPQPRPHQLGAPADPRRRF 421
Query: 400 RMGPACVHGARWHCV*RSGVCPPKCKWRRQPVHCYLVAG 516
+G A VHG+ H V +GV PP+ + RQPVH +LVAG
Sbjct: 422 WLGEAGVHGSWRHRVRGAGVRPPEREQGRQPVHRHLVAG 538
Score = 99.6 bits (211), Expect(2) = 1e-047
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / +2
Query: 1 CTPVQHICSASGTCLEMCLPCTQPTS*TTHQVVLRH*WPSNATASTTRWVLWQCHLHR 174
C VQH+CSAS TCL +CLPC QP S T HQ VLRH W + A A R +LW+CHLHR
Sbjct: 23 CATVQHVCSASCTCLALCLPCAQPGSGTAHQAVLRHRWATTAAAPAARRLLWECHLHR 196
Score = 99.6 bits (211), Expect(2) = 3e-043
Identities = 44/87 (50%), Positives = 54/87 (62%)
Frame = -3 / -1
Query: 521 AQPATR*QWTGCRRHLHLGGQTPDLHTQCHLAP*TQAGPIRSQHHG*EGAPSW*ALGSGS 342
A PATR +WTGCR GG+TP T+C P*T A P +++ G GAPSW* G G+
Sbjct: 543 APPATRWRWTGCRPCSRSGGRTPAPRTRCRQDP*TPASPSQNRRRGSAGAPSW*GRGWGT 364
Query: 341 GRYALHAQVLTDPVEAPGSLTLSGSSR 261
G+ LH +LT P +PGS L GSSR
Sbjct: 363 GKCVLHGPMLTGPAASPGSPGLIGSSR 283
Score = 95.9 bits (203), Expect(2) = 3e-043
Identities = 39/64 (60%), Positives = 42/64 (65%)
Frame = -3 / -1
Query: 200 PCPPQQVVSR*R*HCQSTHLVVEAVAFDGHQWRNTTWWVVQEVGCVQGRHISRHVPLALH 21
PC PQ+ R*R*H QS L A A H+WRNT WW V E GC QGRH +RHV LALH
Sbjct: 222 PCLPQRAGWR*R*HSQSNLLAAGAAAVVAHRWRNTAWWAVPEPGCAQGRHSARHVQLALH 43
Query: 20 MC*T 9
C*T
Sbjct: 42 TC*T 31
>gb|CB882717.1|CB882717 HL02K11w HL Hordeum vulgare subsp. vulgare cDNA clone HL02K11
3-PRIME, mRNA sequence
Length = 629
Score = 386 bits (837), Expect = e-106
Identities = 157/182 (86%), Positives = 166/182 (91%)
Frame = +2 / +2
Query: 2 APRFSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATP 181
APR STYAVL AHVW+C SLAR L PEQPTKLYCATDGRQ LQP LP+GYFGNVIFTATP
Sbjct: 74 APRSSTYAVLGAHVWRCASLARGLSPEQPTKLYCATDGRQRLQPALPEGYFGNVIFTATP 253
Query: 182 LAEAGKVTSELAEGAAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGL 361
LA AGKVT LA+GA IQ AL+ MDN+YCRSALD LE+QPDLSALVRGAHTFRCPNLGL
Sbjct: 254 LAVAGKVTGSLADGATTIQAALEVMDNEYCRSALDSLEMQPDLSALVRGAHTFRCPNLGL 433
Query: 362 TSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRK 541
TSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSA+ DGSLS+AISLQAEHMEKFRK
Sbjct: 434 TSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRK 613
Query: 542 LI 547
+I
Sbjct: 614 MI 619
Score = 289 bits (626), Expect = 1e-077
Identities = 130/184 (70%), Positives = 140/184 (76%)
Frame = -2 / -3
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S I FRNFS+CSAC+E+A DRLPS ALG T A PSYAMPPGPMNTGRP PKSAS +GRR
Sbjct: 624 SKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*MGRR 445
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAAPSASSLVTLP 193
TQLVSPR G R VCAP S+AERQ SLSI SSA W+ APSAS VTLP
Sbjct: 444 TQLVSPRLGHRNVCAPRTSADRSGCISRESSAERQYSLSITSSAAWIVVAPSASEPVTLP 265
Query: 192 ASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGRLRARETHFQTCAASTAYVL 13
A+ASGVAVKMTLPK PSGS GCS RPSVAQY+LVGCSG R RAR+ H TCA STA VL
Sbjct: 264 ATASGVAVKMTLPK*PSGSAGCSRCRPSVAQYSLVGCSGDRPRARDAHRHTCAPSTA*VL 85
Query: 12 NRGA 1
+RGA
Sbjct: 84 DRGA 73
Score = 133 bits (285), Expect = 1e-030
Identities = 74/180 (41%), Positives = 101/180 (56%)
Frame = -1 / -2
Query: 547 D*LPELLHVLSLQRDSNGQAAVAICTWEDKRQTFIRNATWPHEHRPAPSEVSIMDRKAHP 368
D LPELLH+L LQRD + QAAVA E + + +R+A HEH PAP++V +++ +AHP
Sbjct: 619 DHLPELLHMLGLQRDGHRQAAVAAGAGEHEGEPLVRDAAGAHEHGPAPAKVGVVNGQAHP 440
Query: 367 AGEP*VRAAEGMRSTHKC*QIRLKLQXXXXXXXXXXVHPIQCSLDDCCSFCQLTGHLARL 188
AGEP V A E +R+ + Q+RL LQ VH +Q LD + Q HLAR
Sbjct: 439 AGEPEVGAPERVRAADQRRQVRLHLQGVQRRAAVLVVHHLQRRLDRGRAVRQRASHLARH 260
Query: 187 SKWCRGEDDIAKVPIW*WRL*RLTAISGAIQLGGLFRR*AACKGDTFPDMCR*HCICAEP 8
+ GEDD+A+V + L L + GA+QLGGL A +G P + H + A P
Sbjct: 259 RERRGGEDDVAEVALRERGLQPLPPVRGAVQLGGLLWGQATGQGRAPPHVRPEHRVGAGP 80
Score = 107 bits (228), Expect(2) = 1e-028
Identities = 52/107 (48%), Positives = 67/107 (62%)
Frame = +1 / +1
Query: 220 RSSSHPGSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*L 399
R PG G DGQR+LPL LPG + V A++P+P+PRAHQLGAP++ L
Sbjct: 292 RRDHDPGGAGGDGQRVLPLGAGLPGDAA*PVGAGPRRAHVPVPQPRAHQLGAPAHSRRRL 471
Query: 400 RMGPACVHGARWHCV*RSGVCPPKCKWRRQPVHCYLVAG*AHGEVPE 540
+GPA VHG R H V + + P+ + RRQPV +L AG A+GEVPE
Sbjct: 472 WLGPARVHGPRRHRVRGARLRAPQRQPRRQPVGGHLAAGRAYGEVPE 612
Score = 96.8 bits (205), Expect(2) = 6e-030
Identities = 47/100 (47%), Positives = 58/100 (58%)
Frame = -3 / -1
Query: 551 RRLASGTSPCAQPATR*QWTGCRRHLHLGGQTPDLHTQCHLAP*TQAGPIRSQHHG*EGA 372
+R +SGTSP A+PA R TGCRR G + T+C P*T+AGP +S+ GA
Sbjct: 623 QRSSSGTSPYARPAARWPPTGCRRGWRWGARRRAPRTRCRRGP*TRAGPSQSRRREWAGA 444
Query: 371 PSW*ALGSGSGRYALHAQVLTDPVEAPGSLTLSGSSRCPS 252
PSW*A G G+G A T +PGS SGS+RCPS
Sbjct: 443 PSW*ARGWGTGTCARRGPAPTGQAASPGSPAPSGSTRCPS 324
Score = 54.2 bits (112), Expect(2) = 6e-030
Identities = 25/68 (36%), Positives = 30/68 (44%)
Frame = -3 / -1
Query: 212 AHWSPCPPQQVVSR*R*HCQSTHLVVEAVAFDGHQWRNTTWWVVQEVGCVQGRHISRHVP 33
A SPCPP + R*R* C+S+ A A WR+T WW G G + P
Sbjct: 284 ASQSPCPPPRAAWR*R*RCRSSPPGARAAAAAARPWRSTAWWAALGTGHGPGTRTATRAP 105
Query: 32 LALHMC*T 9
A C T
Sbjct: 104 RAPRRCWT 81
Score = 39.6 bits (80), Expect(2) = 1e-028
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +1 / +1
Query: 10 VQHICSASGTCLEMCLPCTQPTS*TTHQVVLRH*WPSNATASTTRWVLWQCHLHR 174
VQH+ A G + + +P P HQ VLRH + A A +L Q HLHR
Sbjct: 82 VQHLRGARGARVAVRVPGPWPVPRAAHQAVLRHGRAAAAAARAPGGLLRQRHLHR 246
>gb|BF256845.2|BF256845 HVSMEf0011C19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011C19f, mRNA sequence
Length = 582
Score = 316 bits (685), Expect(3) = 4e-096
Identities = 126/139 (90%), Positives = 131/139 (94%)
Frame = +2 / +3
Query: 35 AHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAEAGKVTSEL 214
AHVW+CVSLAR+L PEQPTKLYCATDGRQ LQPPLP+GYFGNVIFTATPLAEAGKVTS L
Sbjct: 3 AHVWRCVSLARNLAPEQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATPLAEAGKVTSGL 182
Query: 215 AEGAAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDA 394
AEGAAVIQGALDRM DYC+SALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDA
Sbjct: 183 AEGAAVIQGALDRMTGDYCQSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDA 362
Query: 395 DFGWGRPVFMGPGGIAYEG 451
DFGWGRPVFMGPGGI G
Sbjct: 363 DFGWGRPVFMGPGGIRTRG 419
Score = 258 bits (558), Expect = 3e-068
Identities = 119/173 (68%), Positives = 123/173 (71%)
Frame = -2 / -3
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S IS RNFSMCSACNE + P +P MPPGPMNTG P PKSASWIGRR
Sbjct: 520 SRISSRNFSMCSACNEDGNGQAPVLARAREDERQPLVRMPPGPMNTGLPQPKSASWIGRR 341
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAAPSASSLVTLP 193
TQLV PR G RKVCAP S A+ Q*S ILSSAPWMTAAPSAS LVTLP
Sbjct: 340 TQLVRPRLGHRKVCAPRTNADRSGCISR*SRADWQ*SPVILSSAPWMTAAPSASPLVTLP 161
Query: 192 ASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGRLRARETHFQTCA 34
ASASGVAVKMT PK PSGSGGCS RPSVAQY+LVGCSG RLRARET QTCA
Sbjct: 160 ASASGVAVKMTFPK*PSGSGGCSRCRPSVAQYSLVGCSGARLRARETQRQTCA 2
Score = 144 bits (308), Expect(3) = 1e-036
Identities = 69/135 (51%), Positives = 83/135 (61%)
Frame = -1 / -2
Query: 439 NATWPHEHRPAPSEVSIMDRKAHPAGEP*VRAAEGMRSTHKC*QIRLKLQXXXXXXXXXX 260
+A HEHRP P+++ ++DR+AHPAGE V A E + ST +C*Q+RL LQ
Sbjct: 407 DAARTHEHRPPPAKIGVVDRQAHPAGEAEVGAPESVCSTDQC*QVRLHLQVVQG*LAVVA 228
Query: 259 VHPIQCSLDDCCSFCQLTGHLARLSKWCRGEDDIAKVPIW*WRL*RLTAISGAIQLGGLF 80
HP+ SLDD CSF Q +LA L + GEDDI KV W L L+ I GAIQLGGLF
Sbjct: 227 SHPV*RSLDDRCSFRQPARNLACLGERGGGEDDIPKVTFWQRGLQPLSPIGGAIQLGGLF 48
Query: 79 RR*AACKGDTFPDMC 35
R A KGD PDMC
Sbjct: 47 RSQVARKGDAAPDMC 3
Score = 108 bits (230), Expect(3) = 1e-027
Identities = 55/130 (42%), Positives = 60/130 (46%)
Frame = +3 / +1
Query: 36 HMSGNVSPLHAAYLLNNPPSCIAPLMAVKRYSLHYQMGTLAMSXXXXXXXXXXXXXXVSW 215
HMSG SPL A +L N+PPSCIAP M S Q TL MS W
Sbjct: 4 HMSGAASPLRATWLRNSPPSCIAPPMGDNGCSPRCQKVTLGMSSSPPPRSPRQARLRAGW 183
Query: 216 QKEQQSSREHWIGWXXXXXXXXXXXWSFNRICQHLCVERIPSAART*GSPAGCAFLSMML 395
+KEQ+SSRE G W +R CQH VE S A T SPAGCA S
Sbjct: 184 RKEQRSSRER*TG*LATTANQPWTTWRCSRTCQHWSVEHTLSGAPTSASPAGCACRSTTP 363
Query: 396 TSDGAGLCSW 425
G G CSW
Sbjct: 364 ILAGGGRCSW 393
Score = 87.2 bits (184), Expect(2) = 2e-033
Identities = 44/97 (45%), Positives = 52/97 (53%)
Frame = -3 / -1
Query: 551 RRLASGTSPCAQPATR*QWTGCRRHLHLGGQTPDLHTQCHLAP*TQAGPIRSQHHG*EGA 372
R A GTSPCA PAT+ R L LG C P*T A P +++ G GA
Sbjct: 519 RGSAPGTSPCAPPATKMAMDRLRSLLALGRTNASPSYGCRQDP*TPASPSQNRRRGSAGA 340
Query: 371 PSW*ALGSGSGRYALHAQVLTDPVEAPGSLTLSGSSR 261
PSW* G G+G+ LH +LT P +PGS L GSSR
Sbjct: 339 PSW*GRGWGTGKCVLHGPMLTGPAASPGSPGLIGSSR 229
Score = 85.4 bits (180), Expect(4) = 3e-040
Identities = 38/73 (52%), Positives = 46/73 (63%)
Frame = +1 / +2
Query: 220 RSSSHPGSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*L 399
RSS HPGS D RLLP+S LPG + G VS WS + P+P+PR HQLGAP+ P
Sbjct: 188 RSSGHPGSARQDDWRLLPISPGLPGDAAGPVSIGPWSTHFPVPQPRPHQLGAPADPRRRF 367
Query: 400 RMGPACVHGARWH 438
+G A VHG+ H
Sbjct: 368 WLGEAGVHGSWRH 406
Score = 75.3 bits (158), Expect(2) = 2e-033
Identities = 30/55 (54%), Positives = 34/55 (61%)
Frame = -3 / -1
Query: 200 PCPPQQVVSR*R*HCQSTHLVVEAVAFDGHQWRNTTWWVVQEVGCVQGRHISRHV 36
PC P++ R*R*H QS L A A H+WRNT WW V E GC QGR +RHV
Sbjct: 168 PCLPRRAGWR*R*HSQSNLLAAGAAAVVAHRWRNTAWWAVPEPGCAQGRRSARHV 4
Score = 73.0 bits (153), Expect(4) = 3e-040
Identities = 27/46 (58%), Positives = 31/46 (67%)
Frame = +1 / +2
Query: 37 TCLEMCLPCTQPTS*TTHQVVLRH*WPSNATASTTRWVLWQCHLHR 174
TCL + LPC QP S T HQ VLRH W + A A R +LW+CHLHR
Sbjct: 5 TCLALRLPCAQPGSGTAHQAVLRHRWATTAAAPAARRLLWECHLHR 142
Score = 40.5 bits (82), Expect(3) = 4e-096
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +2 / +2
Query: 443 YEGLAFVLPSANGDGSLSIAI 505
YEGLAFVLPSA+ D SLSIAI
Sbjct: 410 YEGLAFVLPSASKDRSLSIAI 472
Score = 34.5 bits (69), Expect(3) = 4e-096
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2 / +3
Query: 485 GSLSIAISLQAEHMEKFRKLI 547
G+ + SLQAEHMEKFR+LI
Sbjct: 453 GACPLPSSLQAEHMEKFRELI 515
Score = 33.1 bits (66), Expect(4) = 3e-040
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3 / +1
Query: 507 RCRLSTWRSSGS*SA 551
RCR STWRSSGS*S+
Sbjct: 475 RCRRSTWRSSGS*SS 519
Score = 29.9 bits (59), Expect(4) = 3e-040
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3 / +3
Query: 426 GQVALRMKVWRLSSQVQMATAACPLLS 506
G +R + WR SS+ + T ACPL S
Sbjct: 393 GPGGIRTRGWRSSSRARARTGACPLPS 473
Score = 29.0 bits (57), Expect(3) = 1e-036
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -1 / -2
Query: 559 LSFAD*LPELLHVLSLQR 506
L D LPELLHVL LQR
Sbjct: 527 LHIEDQLPELLHVLRLQR 474
Score = 26.3 bits (51), Expect(3) = 1e-027
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1 / +2
Query: 508 VAG*AHGEVPEANRRSLN 561
VAG AHGEVP A+ R ++
Sbjct: 476 VAGGAHGEVPGADPRCVD 529
Score = 26.3 bits (51), Expect(3) = 1e-027
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 451 SGVCPPKCKWRRQPVHCYL 507
+GV PP+ + +PVHC+L
Sbjct: 418 AGVRPPEREQGPEPVHCHL 474
Score = 21.7 bits (41), Expect(3) = 1e-036
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3 / -2
Query: 506 R*QWTGCRRHLHLGGQTP 453
R QWTG GG+TP
Sbjct: 473 RWQWTGSGPCSRSGGRTP 420
>gb|CB859459.1|CB859459 HI10I05w HI Hordeum vulgare subsp. vulgare cDNA clone HI10I05
3-PRIME, mRNA sequence
Length = 538
Score = 259 bits (560), Expect = 2e-068
Identities = 107/114 (93%), Positives = 111/114 (97%)
Frame = +2 / -3
Query: 206 SELAEGAAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPI 385
S LAEGAAVIQGALDRM +DYC+SALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPI
Sbjct: 536 SGLAEGAAVIQGALDRMTSDYCQSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPI 357
Query: 386 HDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLI 547
HDADFGWGRPVFMGPGGIAYEGLAFVLPSA+ DGSLSIAISLQAEHMEKFRKLI
Sbjct: 356 HDADFGWGRPVFMGPGGIAYEGLAFVLPSASKDGSLSIAISLQAEHMEKFRKLI 195
Score = 199 bits (430), Expect = 1e-050
Identities = 88/116 (75%), Positives = 90/116 (77%)
Frame = -2 / +1
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S ISFRNFSMCSACNE+AMDRLPS ALGRTNA PSYAMPPGPMNTG P PKSASWIGRR
Sbjct: 190 SRISFRNFSMCSACNEMAMDRLPSLLALGRTNASPSYAMPPGPMNTGLPQPKSASWIGRR 369
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAAPSASSL 205
TQLV PR G RKVCAP S A+ Q*SL ILSSAPWMTAAPSAS L
Sbjct: 370 TQLVRPRLGHRKVCAPRTNADRSGCISR*SRADWQ*SLVILSSAPWMTAAPSASPL 537
Score = 134 bits (288), Expect = 5e-031
Identities = 61/116 (52%), Positives = 75/116 (64%)
Frame = -1 / +3
Query: 559 LSFAD*LPELLHVLSLQRDSNGQAAVAICTWEDKRQTFIRNATWPHEHRPAPSEVSIMDR 380
L D LPELLHVL LQRD +GQAAV ED+RQ +R+A HEHRP P+++ ++DR
Sbjct: 183 LHIEDQLPELLHVLRLQRDGDGQAAVLARAREDERQPLVRDAARTHEHRPPPAKIGVVDR 362
Query: 379 KAHPAGEP*VRAAEGMRSTHKC*QIRLKLQXXXXXXXXXXVHPIQCSLDDCCSFCQ 212
+AHPAGE V A E + ST +C*Q+RL LQ HP+ SLDD CSF Q
Sbjct: 363 QAHPAGEAEVGAPESVCSTDQC*QVRLHLQVVQG*LAVVASHPV*RSLDDRCSFRQ 530
Score = 131 bits (280), Expect = 7e-030
Identities = 61/114 (53%), Positives = 76/114 (66%)
Frame = +1 / -2
Query: 220 RSSSHPGSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*L 399
RSS HPGS D RLLP+S LPG + G VS WS + P+P+PR HQLGAP+ P
Sbjct: 522 RSSGHPGSARQDD*RLLPISPGLPGDAAGPVSIGPWSTHFPVPQPRPHQLGAPADPRRRF 343
Query: 400 RMGPACVHGARWHCV*RSGVCPPKCKWRRQPVHCYLVAG*AHGEVPEANRRSLN 561
+G A VHG+ H V +GV PP+ + RQPVH +LVAG AHGEVPEA+ R ++
Sbjct: 342 WLGEAGVHGSWRHRVRGAGVRPPEREQGRQPVHRHLVAGGAHGEVPEADPRCVD 181
Score = 119 bits (254), Expect = 3e-026
Identities = 56/113 (49%), Positives = 63/113 (55%)
Frame = +3 / -1
Query: 213 WQKEQQSSREHWIGWXXXXXXXXXXXWSFNRICQHLCVERIPSAART*GSPAGCAFLSMM 392
W+KEQ+SSRE G W +R CQH VE S A T SPAGCA S
Sbjct: 529 WRKEQRSSRER*TG*LATTANQPWTTWRCSRTCQHWSVEHTLSGAPTSASPAGCACRSTT 350
Query: 393 LTSDGAGLCSWGQVALRMKVWRLSSQVQMATAACPLLSRCRLSTWRSSGS*SA 551
G G CSW A R + WR SS+ + TAACP SRCR STWRSSGS*S+
Sbjct: 349 PILAGGGRCSWVLAASRTRGWRSSSRARARTAACPSPSRCRRSTWRSSGS*SS 191
Score = 117 bits (251), Expect = 7e-026
Identities = 52/97 (53%), Positives = 62/97 (63%)
Frame = -3 / +2
Query: 551 RRLASGTSPCAQPATR*QWTGCRRHLHLGGQTPDLHTQCHLAP*TQAGPIRSQHHG*EGA 372
R ASGTSPCA PATR +WTGCR GG+TP T+C P*T A P +++ G GA
Sbjct: 191 RGSASGTSPCAPPATRWRWTGCRPCSRSGGRTPAPRTRCRQDP*TPASPSQNRRRGSAGA 370
Query: 371 PSW*ALGSGSGRYALHAQVLTDPVEAPGSLTLSGSSR 261
PSW* G G+G+ LH +LT P +PGS L GSSR
Sbjct: 371 PSW*GRGWGTGKCVLHGPMLTGPAASPGSPGLIGSSR 481
>gb|BU994209.1|BU994209 HM06C21r HM Hordeum vulgare subsp. vulgare cDNA clone HM06C21
5-PRIME, mRNA sequence
Length = 603
Score = 256 bits (554), Expect = 1e-067
Identities = 103/118 (87%), Positives = 111/118 (94%)
Frame = +2 / +1
Query: 194 GKVTSELAEGAAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWV 373
G+VT LA+GA IQ AL+ MDN+YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWV
Sbjct: 28 GQVTGSLADGATTIQAALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWV 207
Query: 374 RLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLI 547
RLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSA+ DGSLS+AISLQAEHMEKFRK+I
Sbjct: 208 RLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMI 381
Score = 179 bits (385), Expect = 2e-044
Identities = 80/120 (66%), Positives = 86/120 (71%)
Frame = -2 / -2
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S I FRNFS+CSAC+E+A DRLPS ALG T A PSYAMPPGPMNTGRP PKSAS +GRR
Sbjct: 386 SKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*MGRR 207
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAAPSASSLVTLP 193
TQLVSPR G R VCAP S+AERQ SLSI SSA W+ APSAS VT P
Sbjct: 206 TQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAAWIVVAPSASEPVTCP 27
Score = 107 bits (228), Expect = 1e-022
Identities = 52/107 (48%), Positives = 67/107 (62%)
Frame = +1 / +3
Query: 220 RSSSHPGSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*L 399
R PG G DGQR+LPL LPG + V A++P+P+PRAHQLGAP++ L
Sbjct: 54 RRDHDPGGAGGDGQRVLPLGAGLPGDAA*PVGAGPRRAHVPVPQPRAHQLGAPAHSRRRL 233
Query: 400 RMGPACVHGARWHCV*RSGVCPPKCKWRRQPVHCYLVAG*AHGEVPE 540
+GPA VHG R H V + + P+ + RRQPV +L AG A+GEVPE
Sbjct: 234 WLGPARVHGPRRHRVRGARLRAPQRQPRRQPVGGHLAAGRAYGEVPE 374
Score = 102 bits (218), Expect = 2e-021
Identities = 51/117 (43%), Positives = 69/117 (58%)
Frame = -1 / -1
Query: 547 D*LPELLHVLSLQRDSNGQAAVAICTWEDKRQTFIRNATWPHEHRPAPSEVSIMDRKAHP 368
D LPELLH+L LQRD + QAAVA E + + +R+A HEH PAP++V +++ +AHP
Sbjct: 381 DHLPELLHMLGLQRDGHRQAAVAAGAGEHEGEPLVRDAAGAHEHGPAPAKVGVVNGQAHP 202
Query: 367 AGEP*VRAAEGMRSTHKC*QIRLKLQXXXXXXXXXXVHPIQCSLDDCCSFCQLTGHL 197
AGEP V A E +R+ + Q+RL LQ VH +Q LD + Q HL
Sbjct: 201 AGEPEVGAPERVRAADQRRQVRLHLQVVQRRAAVLVVHHLQRRLDRGRAVRQRASHL 31
>gb|BM444360.1|BM444360 EBem09_SQ004_O20_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_O20 5', mRNA sequence
Length = 555
Score = 249 bits (538), Expect = 2e-065
Identities = 100/112 (89%), Positives = 107/112 (95%)
Frame = +2 / +1
Query: 212 LAEGAAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHD 391
LA+GA IQ AL+ MDN+YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHD
Sbjct: 7 LADGATTIQAALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHD 186
Query: 392 ADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLI 547
ADFGWGRPVFMGPGGIAYEGLAFVLPSA+ DGSLS+AISLQAEHMEKFRK+I
Sbjct: 187 ADFGWGRPVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMI 342
Score = 173 bits (373), Expect = 1e-042
Identities = 77/114 (67%), Positives = 83/114 (72%)
Frame = -2 / -2
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S I FRNFS+CSAC+E+A DRLPS ALG T A PSYAMPPGPMNTGRP PKSAS +GRR
Sbjct: 347 SKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*MGRR 168
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAAPSAS 211
TQLVSPR G R VCAP S+AERQ SLSI SSA W+ APSAS
Sbjct: 167 TQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAAWIVVAPSAS 6
Score = 107 bits (228), Expect = 1e-022
Identities = 52/107 (48%), Positives = 67/107 (62%)
Frame = +1 / +3
Query: 220 RSSSHPGSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*L 399
R PG G DGQR+LPL LPG + V A++P+P+PRAHQLGAP++ L
Sbjct: 15 RRDHDPGGAGGDGQRVLPLGAGLPGDAA*PVGAGPRRAHVPVPQPRAHQLGAPAHSRRRL 194
Query: 400 RMGPACVHGARWHCV*RSGVCPPKCKWRRQPVHCYLVAG*AHGEVPE 540
+GPA VHG R H V + + P+ + RRQPV +L AG A+GEVPE
Sbjct: 195 WLGPARVHGPRRHRVRGARLRAPQRQPRRQPVGGHLAAGRAYGEVPE 335
Score = 100 bits (214), Expect = 8e-021
Identities = 48/105 (45%), Positives = 65/105 (61%)
Frame = -1 / -1
Query: 547 D*LPELLHVLSLQRDSNGQAAVAICTWEDKRQTFIRNATWPHEHRPAPSEVSIMDRKAHP 368
D LPELLH+L LQRD + QAAVA E + + +R+A HEH PAP++V +++ +AHP
Sbjct: 342 DHLPELLHMLGLQRDGHRQAAVAAGAGEHEGEPLVRDAAGAHEHGPAPAKVGVVNGQAHP 163
Query: 367 AGEP*VRAAEGMRSTHKC*QIRLKLQXXXXXXXXXXVHPIQCSLD 233
AGEP V A E +R+ + Q+RL LQ VH +Q LD
Sbjct: 162 AGEPEVGAPERVRAADQRRQVRLHLQVVQRRAAVLVVHHLQRRLD 28
>gb|CB880317.1|CB880317 HM06C21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06C21
3-PRIME, mRNA sequence
Length = 560
Score = 249 bits (538), Expect = 2e-065
Identities = 100/112 (89%), Positives = 107/112 (95%)
Frame = +2 / -3
Query: 212 LAEGAAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHD 391
LA+GA IQ AL+ MDN+YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHD
Sbjct: 558 LADGATTIQAALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHD 379
Query: 392 ADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLI 547
ADFGWGRPVFMGPGGIAYEGLAFVLPSA+ DGSLS+AISLQAEHMEKFRK+I
Sbjct: 378 ADFGWGRPVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMI 223
Score = 173 bits (373), Expect = 1e-042
Identities = 77/114 (67%), Positives = 83/114 (72%)
Frame = -2 / +2
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S I FRNFS+CSAC+E+A DRLPS ALG T A PSYAMPPGPMNTGRP PKSAS +GRR
Sbjct: 218 SKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*MGRR 397
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAAPSAS 211
TQLVSPR G R VCAP S+AERQ SLSI SSA W+ APSAS
Sbjct: 398 TQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAAWIVVAPSAS 559
Score = 107 bits (228), Expect = 1e-022
Identities = 52/107 (48%), Positives = 67/107 (62%)
Frame = +1 / -2
Query: 220 RSSSHPGSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*L 399
R PG G DGQR+LPL LPG + V A++P+P+PRAHQLGAP++ L
Sbjct: 550 RRDHDPGGAGGDGQRVLPLGAGLPGDAA*PVGAGPRRAHVPVPQPRAHQLGAPAHSRRRL 371
Query: 400 RMGPACVHGARWHCV*RSGVCPPKCKWRRQPVHCYLVAG*AHGEVPE 540
+GPA VHG R H V + + P+ + RRQPV +L AG A+GEVPE
Sbjct: 370 WLGPARVHGPRRHRVRGARLRAPQRQPRRQPVGGHLAAGRAYGEVPE 230
Score = 100 bits (214), Expect = 8e-021
Identities = 48/105 (45%), Positives = 65/105 (61%)
Frame = -1 / +1
Query: 547 D*LPELLHVLSLQRDSNGQAAVAICTWEDKRQTFIRNATWPHEHRPAPSEVSIMDRKAHP 368
D LPELLH+L LQRD + QAAVA E + + +R+A HEH PAP++V +++ +AHP
Sbjct: 223 DHLPELLHMLGLQRDGHRQAAVAAGAGEHEGEPLVRDAAGAHEHGPAPAKVGVVNGQAHP 402
Query: 367 AGEP*VRAAEGMRSTHKC*QIRLKLQXXXXXXXXXXVHPIQCSLD 233
AGEP V A E +R+ + Q+RL LQ VH +Q LD
Sbjct: 403 AGEPEVGAPERVRAADQRRQVRLHLQVVQRRAAVLVVHHLQRRLD 537
>gb|CA016620.1|CA016620 HV08A21u HV Hordeum vulgare subsp. vulgare cDNA clone HV08A21
3-PRIME, mRNA sequence
Length = 512
Score = 246 bits (531), Expect = 2e-064
Identities = 100/106 (94%), Positives = 104/106 (98%)
Frame = +2 / -1
Query: 230 VIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWG 409
VIQGALDRM +DYC+SALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWG
Sbjct: 512 VIQGALDRMTSDYCQSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWG 333
Query: 410 RPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLI 547
RPVFMGPGGIAYEGLAFVLPSA+ DGSLSIAISLQAEHMEKFRKLI
Sbjct: 332 RPVFMGPGGIAYEGLAFVLPSASKDGSLSIAISLQAEHMEKFRKLI 195
Score = 183 bits (395), Expect = 9e-046
Identities = 80/107 (74%), Positives = 82/107 (76%)
Frame = -2 / +1
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S ISFRNFSMCSACNE+AMDRLPS ALGRTNA PSYAMPPGPMNTG P PKSASWIGRR
Sbjct: 190 SRISFRNFSMCSACNEMAMDRLPSLLALGRTNASPSYAMPPGPMNTGLPQPKSASWIGRR 369
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWM 232
TQLV PR G RKVCAP S A+ Q*SL ILSSAPWM
Sbjct: 370 TQLVRPRLGHRKVCAPRTNADRSGCISR*SRADWQ*SLVILSSAPWM 510
Score = 126 bits (270), Expect = 2e-028
Identities = 57/110 (51%), Positives = 71/110 (64%)
Frame = -1 / +3
Query: 559 LSFAD*LPELLHVLSLQRDSNGQAAVAICTWEDKRQTFIRNATWPHEHRPAPSEVSIMDR 380
L D LPELLHVL LQRD +GQAAV ED+RQ +R+A HEHRP P+++ ++DR
Sbjct: 183 LHIEDQLPELLHVLRLQRDGDGQAAVLARAREDERQPLVRDAARTHEHRPPPAKIGVVDR 362
Query: 379 KAHPAGEP*VRAAEGMRSTHKC*QIRLKLQXXXXXXXXXXVHPIQCSLDD 230
+AHPAGE V A E + ST +C*Q+RL LQ HP+ SLDD
Sbjct: 363 QAHPAGEAEVGAPESVCSTDQC*QVRLHLQVVQG*LAVVASHPV*RSLDD 512
Score = 125 bits (267), Expect = 4e-028
Identities = 58/110 (52%), Positives = 73/110 (66%)
Frame = +1 / -3
Query: 232 HPGSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*LRMGP 411
HPGS D RLLP+S LPG + G VS WS + P+P+PR HQLGAP+ P +G
Sbjct: 510 HPGSARQDD*RLLPISPGLPGDAAGPVSIGPWSTHFPVPQPRPHQLGAPADPRRRFWLGE 331
Query: 412 ACVHGARWHCV*RSGVCPPKCKWRRQPVHCYLVAG*AHGEVPEANRRSLN 561
A VHG+ H V +GV PP+ + RQPVH +LVAG AHGEVPEA+ R ++
Sbjct: 330 AGVHGSWRHRVRGAGVRPPEREQGRQPVHRHLVAGGAHGEVPEADPRCVD 181
Score = 117 bits (251), Expect = 7e-026
Identities = 52/97 (53%), Positives = 62/97 (63%)
Frame = -3 / +2
Query: 551 RRLASGTSPCAQPATR*QWTGCRRHLHLGGQTPDLHTQCHLAP*TQAGPIRSQHHG*EGA 372
R ASGTSPCA PATR +WTGCR GG+TP T+C P*T A P +++ G GA
Sbjct: 191 RGSASGTSPCAPPATRWRWTGCRPCSRSGGRTPAPRTRCRQDP*TPASPSQNRRRGSAGA 370
Query: 371 PSW*ALGSGSGRYALHAQVLTDPVEAPGSLTLSGSSR 261
PSW* G G+G+ LH +LT P +PGS L GSSR
Sbjct: 371 PSW*GRGWGTGKCVLHGPMLTGPAASPGSPGLIGSSR 481
Score = 106 bits (226), Expect = 2e-022
Identities = 52/107 (48%), Positives = 57/107 (53%)
Frame = +3 / -2
Query: 231 SSREHWIGWXXXXXXXXXXXWSFNRICQHLCVERIPSAART*GSPAGCAFLSMMLTSDGA 410
SSRE G W +R CQH VE S A T SPAGCA S G
Sbjct: 511 SSRER*TG*LATTANQPWTTWRCSRTCQHWSVEHTLSGAPTSASPAGCACRSTTPILAGG 332
Query: 411 GLCSWGQVALRMKVWRLSSQVQMATAACPLLSRCRLSTWRSSGS*SA 551
G CSW A R + WR SS+ + TAACP SRCR STWRSSGS*S+
Sbjct: 331 GRCSWVLAASRTRGWRSSSRARARTAACPSPSRCRRSTWRSSGS*SS 191
>gb|BM815962.1|BM815962 HB108B11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB108B11_SK.ab1 similar to Anthranilate
N-benzoyltransferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 882
Score = 204 bits (441), Expect(3) = 2e-064
Identities = 84/93 (90%), Positives = 88/93 (94%)
Frame = +2 / +2
Query: 2 APRFSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATP 181
APRFSTYAVLAAHVW+CVSLAR+L PEQPTKLYCATDGRQ LQPPLP+GYFGNVIFTATP
Sbjct: 494 APRFSTYAVLAAHVWRCVSLARNLAPEQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATP 673
Query: 182 LAEAGKVTSELAEGAAVIQGALDRMDNDYCRSA 280
LAEAGKVTS LAEGAAVIQGALDRM +DYC SA
Sbjct: 674 LAEAGKVTSGLAEGAAVIQGALDRMTSDYCXSA 772
Score = 180 bits (387), Expect = 1e-044
Identities = 81/93 (87%), Positives = 83/93 (89%)
Frame = -2 / -1
Query: 279 AERQ*SLSILSSAPWMTAAPSASSLVTLPASASGVAVKMTLPKYPSGSGGCSV*RPSVAQ 100
A+ Q*SL ILSSAPWMTAAPSAS LVTLPASASGVAVKMT PK PSGSGGCS RPSVAQ
Sbjct: 771 ADXQ*SLVILSSAPWMTAAPSASPLVTLPASASGVAVKMTFPK*PSGSGGCSRCRPSVAQ 592
Query: 99 YNLVGCSGGRLRARETHFQTCAASTAYVLNRGA 1
Y+LVGCSG RLRARET QTCAASTAYVLNRGA
Sbjct: 591 YSLVGCSGARLRARETQRQTCAASTAYVLNRGA 493
Score = 107 bits (228), Expect = 1e-022
Identities = 51/83 (61%), Positives = 55/83 (66%)
Frame = -1 / -3
Query: 256 HPIQCSLDDCCSFCQLTGHLARLSKWCRGEDDIAKVPIW*WRL*RLTAISGAIQLGGLFR 77
HP+ SLDD CSF Q +LA L + GEDDI KV W L L+ I GAIQLGGLFR
Sbjct: 748 HPV*RSLDDRCSFRQPARNLACLGERGGGEDDIPKVTFWQRGLQPLSPIGGAIQLGGLFR 569
Query: 76 R*AACKGDTFPDMCR*HCICAEP 8
A KGDT PDMC *HCICAEP
Sbjct: 568 SQVARKGDTAPDMCS*HCICAEP 500
Score = 100 bits (212), Expect(3) = 9e-025
Identities = 37/58 (63%), Positives = 41/58 (70%)
Frame = +1 / +1
Query: 1 CTPVQHICSASGTCLEMCLPCTQPTS*TTHQVVLRH*WPSNATASTTRWVLWQCHLHR 174
C VQHICSAS TCL +CLPC QP S T HQ VLRH W + A A R +LW+CHLHR
Sbjct: 493 CATVQHICSASCTCLALCLPCAQPGSGTAHQAVLRHRWATTAAAPAARRLLWECHLHR 666
Score = 50.6 bits (104), Expect(3) = 2e-064
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +2 / +3
Query: 281 LDYLELQPDLSALVRGAHTFRCP 349
LDYLE+QPDLSALVRGAHTF P
Sbjct: 774 LDYLEMQPDLSALVRGAHTFPLP 842
Score = 29.9 bits (59), Expect(3) = 2e-064
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / +1
Query: 338 FRCPNLGLTSW 370
FRCPNL LTSW
Sbjct: 832 FRCPNLRLTSW 864
Score = 25.8 bits (50), Expect(3) = 9e-025
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1 / +1
Query: 220 RSSSHPGSTG*DGQRLLPLS 279
RSS HPGS D RLL +S
Sbjct: 712 RSSGHPGSARQDD*RLLXIS 771
Score = 25.4 bits (49), Expect(3) = 9e-025
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 340 PLPEPRAHQLG 372
PLP+P HQLG
Sbjct: 834 PLPQPSXHQLG 866
>gb|CB859645.1|CB859645 HI11B21w HI Hordeum vulgare subsp. vulgare cDNA clone HI11B21
3-PRIME, mRNA sequence
Length = 562
Score = 240 bits (518), Expect = 1e-062
Identities = 96/105 (91%), Positives = 102/105 (97%)
Frame = +2 / -1
Query: 233 IQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 412
IQ AL+ MDN+YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR
Sbjct: 559 IQAALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 380
Query: 413 PVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLI 547
PVFMGPGGIAYEGLAFVLPSA+ DGSLS+AISLQAEHMEKFRK+I
Sbjct: 379 PVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMI 245
Score = 163 bits (350), Expect = 1e-039
Identities = 72/107 (67%), Positives = 78/107 (72%)
Frame = -2 / +3
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S I FRNFS+CSAC+E+A DRLPS ALG T A PSYAMPPGPMNTGRP PKSAS +GRR
Sbjct: 240 SKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*MGRR 419
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWM 232
TQLVSPR G R VCAP S+AERQ SLSI SSA W+
Sbjct: 420 TQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAAWI 560
Score = 106 bits (226), Expect = 2e-022
Identities = 51/102 (50%), Positives = 66/102 (64%)
Frame = +1 / -3
Query: 235 PGSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*LRMGPA 414
PG G DGQR+LPL LPG + V A++P+P+PRAHQLGAP++ L +GPA
Sbjct: 557 PGGAGGDGQRVLPLGAGLPGDAA*PVGAGPRRAHVPVPQPRAHQLGAPAHSRRRLWLGPA 378
Query: 415 CVHGARWHCV*RSGVCPPKCKWRRQPVHCYLVAG*AHGEVPE 540
VHG R H V + + P+ + RRQPV +L AG A+GEVPE
Sbjct: 377 RVHGPRRHRVRGARLRAPQRQPRRQPVGGHLAAGRAYGEVPE 252
Score = 100 bits (214), Expect = 8e-021
Identities = 48/105 (45%), Positives = 65/105 (61%)
Frame = -1 / +2
Query: 547 D*LPELLHVLSLQRDSNGQAAVAICTWEDKRQTFIRNATWPHEHRPAPSEVSIMDRKAHP 368
D LPELLH+L LQRD + QAAVA E + + +R+A HEH PAP++V +++ +AHP
Sbjct: 245 DHLPELLHMLGLQRDGHRQAAVAAGAGEHEGEPLVRDAAGAHEHGPAPAKVGVVNGQAHP 424
Query: 367 AGEP*VRAAEGMRSTHKC*QIRLKLQXXXXXXXXXXVHPIQCSLD 233
AGEP V A E +R+ + Q+RL LQ VH +Q LD
Sbjct: 425 AGEPEVGAPERVRAADQRRQVRLHLQVVQRRAAVLVVHHLQRRLD 559
>gb|CB881920.1|CB881920 HM11E21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11E21
3-PRIME, mRNA sequence
Length = 528
Score = 240 bits (518), Expect = 1e-062
Identities = 96/105 (91%), Positives = 102/105 (97%)
Frame = +2 / -1
Query: 233 IQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 412
IQ AL+ MDN+YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR
Sbjct: 522 IQAALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 343
Query: 413 PVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLI 547
PVFMGPGGIAYEGLAFVLPSA+ DGSLS+AISLQAEHMEKFRK+I
Sbjct: 342 PVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMI 208
Score = 163 bits (350), Expect = 1e-039
Identities = 72/107 (67%), Positives = 78/107 (72%)
Frame = -2 / +2
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S I FRNFS+CSAC+E+A DRLPS ALG T A PSYAMPPGPMNTGRP PKSAS +GRR
Sbjct: 203 SKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*MGRR 382
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWM 232
TQLVSPR G R VCAP S+AERQ SLSI SSA W+
Sbjct: 383 TQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAAWI 523
Score = 106 bits (226), Expect = 2e-022
Identities = 51/102 (50%), Positives = 66/102 (64%)
Frame = +1 / -3
Query: 235 PGSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*LRMGPA 414
PG G DGQR+LPL LPG + V A++P+P+PRAHQLGAP++ L +GPA
Sbjct: 520 PGGAGGDGQRVLPLGAGLPGDAA*PVGAGPRRAHVPVPQPRAHQLGAPAHSRRRLWLGPA 341
Query: 415 CVHGARWHCV*RSGVCPPKCKWRRQPVHCYLVAG*AHGEVPE 540
VHG R H V + + P+ + RRQPV +L AG A+GEVPE
Sbjct: 340 RVHGPRRHRVRGARLRAPQRQPRRQPVGGHLAAGRAYGEVPE 215
Score = 100 bits (214), Expect = 8e-021
Identities = 48/105 (45%), Positives = 65/105 (61%)
Frame = -1 / +1
Query: 547 D*LPELLHVLSLQRDSNGQAAVAICTWEDKRQTFIRNATWPHEHRPAPSEVSIMDRKAHP 368
D LPELLH+L LQRD + QAAVA E + + +R+A HEH PAP++V +++ +AHP
Sbjct: 208 DHLPELLHMLGLQRDGHRQAAVAAGAGEHEGEPLVRDAAGAHEHGPAPAKVGVVNGQAHP 387
Query: 367 AGEP*VRAAEGMRSTHKC*QIRLKLQXXXXXXXXXXVHPIQCSLD 233
AGEP V A E +R+ + Q+RL LQ VH +Q LD
Sbjct: 388 AGEPEVGAPERVRAADQRRQVRLHLQVVQRRAAVLVVHHLQRRLD 522
>gb|CB880111.1|CB880111 HM05I10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05I10
3-PRIME, mRNA sequence
Length = 573
Score = 236 bits (509), Expect = 2e-061
Identities = 94/102 (92%), Positives = 100/102 (98%)
Frame = +2 / -3
Query: 242 ALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVF 421
AL+ MDN+YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVF
Sbjct: 568 ALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVF 389
Query: 422 MGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLI 547
MGPGGIAYEGLAFVLPSA+ DGSLS+AISLQAEHMEKFRK+I
Sbjct: 388 MGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMI 263
Score = 158 bits (339), Expect = 5e-038
Identities = 71/104 (68%), Positives = 76/104 (73%)
Frame = -2 / +3
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S I FRNFS+CSAC+E+A DRLPS ALG T A PSYAMPPGPMNTGRP PKSAS +GRR
Sbjct: 258 SKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*MGRR 437
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSA 241
TQLVSPR G R VCAP S+AERQ SLSI SSA
Sbjct: 438 TQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSA 569
Score = 103 bits (219), Expect = 2e-021
Identities = 50/101 (49%), Positives = 65/101 (64%)
Frame = +1 / -2
Query: 238 GSTG*DGQRLLPLSVRLPGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*LRMGPAC 417
G G DGQR+LPL LPG + V A++P+P+PRAHQLGAP++ L +GPA
Sbjct: 572 GGAGGDGQRVLPLGAGLPGDAA*PVGAGPRRAHVPVPQPRAHQLGAPAHSRRRLWLGPAR 393
Query: 418 VHGARWHCV*RSGVCPPKCKWRRQPVHCYLVAG*AHGEVPE 540
VHG R H V + + P+ + RRQPV +L AG A+GEVPE
Sbjct: 392 VHGPRRHRVRGARLRAPQRQPRRQPVGGHLAAGRAYGEVPE 270
>gb|CB881379.1|CB881379 HM09K05w HM Hordeum vulgare subsp. vulgare cDNA clone HM09K05
3-PRIME, mRNA sequence
Length = 549
Score = 236 bits (509), Expect = 2e-061
Identities = 94/102 (92%), Positives = 100/102 (98%)
Frame = +2 / -1
Query: 242 ALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVF 421
AL+ MDN+YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVF
Sbjct: 546 ALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVF 367
Query: 422 MGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLI 547
MGPGGIAYEGLAFVLPSA+ DGSLS+AISLQAEHMEKFRK+I
Sbjct: 366 MGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMI 241
Score = 158 bits (339), Expect = 5e-038
Identities = 71/104 (68%), Positives = 76/104 (73%)
Frame = -2 / +2
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S I FRNFS+CSAC+E+A DRLPS ALG T A PSYAMPPGPMNTGRP PKSAS +GRR
Sbjct: 236 SKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*MGRR 415
Query: 372 TQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSA 241
TQLVSPR G R VCAP S+AERQ SLSI SSA
Sbjct: 416 TQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSA 547
>gb|AL500666.1|AL500666 AL500666 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H10u 3', mRNA sequence
Length = 533
Score = 207 bits (447), Expect(2) = 3e-058
Identities = 84/87 (96%), Positives = 86/87 (98%)
Frame = +2 / -1
Query: 287 YLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVL 466
YLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVL
Sbjct: 476 YLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVL 297
Query: 467 PSANGDGSLSIAISLQAEHMEKFRKLI 547
PSA+ DGSLSIAISLQAEHMEKFRKLI
Sbjct: 296 PSASKDGSLSIAISLQAEHMEKFRKLI 216
Score = 163 bits (350), Expect(2) = 2e-041
Identities = 66/76 (86%), Positives = 67/76 (88%)
Frame = -2 / +1
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S ISFRNFSMCSACNE+AMDRLPS ALGRTNA PSYAMPPGPMNTG P PKSASWIGRR
Sbjct: 211 SRISFRNFSMCSACNEMAMDRLPSLLALGRTNASPSYAMPPGPMNTGLPQPKSASWIGRR 390
Query: 372 TQLVSPRFGQRKVCAP 325
TQLV PR G RKVCAP
Sbjct: 391 TQLVRPRLGHRKVCAP 438
Score = 117 bits (250), Expect = 9e-026
Identities = 51/90 (56%), Positives = 64/90 (71%)
Frame = -1 / +3
Query: 559 LSFAD*LPELLHVLSLQRDSNGQAAVAICTWEDKRQTFIRNATWPHEHRPAPSEVSIMDR 380
L D LPELLHVL LQRD +GQAAV ED+RQ +R+A HEHRP P+++ ++DR
Sbjct: 204 LHIEDQLPELLHVLRLQRDGDGQAAVLARAREDERQPLVRDAARTHEHRPPPAKIGVVDR 383
Query: 379 KAHPAGEP*VRAAEGMRSTHKC*QIRLKLQ 290
+AHPAGE V A E + ST +C*Q+RL LQ
Sbjct: 384 QAHPAGEAEVGAPESVCSTDQC*QVRLHLQ 473
Score = 108 bits (231), Expect = 4e-023
Identities = 46/88 (52%), Positives = 56/88 (63%)
Frame = -3 / +2
Query: 551 RRLASGTSPCAQPATR*QWTGCRRHLHLGGQTPDLHTQCHLAP*TQAGPIRSQHHG*EGA 372
R ASGTSPCA PATR +WTGCR GG+TP T+C P*T A P +++ G GA
Sbjct: 212 RGSASGTSPCAPPATRWRWTGCRPCSRSGGRTPAPRTRCRQDP*TPASPSQNRRRGSAGA 391
Query: 371 PSW*ALGSGSGRYALHAQVLTDPVEAPG 288
PSW* G G+G+ LH +LT P +PG
Sbjct: 392 PSW*GRGWGTGKCVLHGPMLTGPAASPG 475
Score = 104 bits (221), Expect = 9e-022
Identities = 47/91 (51%), Positives = 61/91 (67%)
Frame = +1 / -3
Query: 289 PGASTGSVSTCAWSAYLPLPEPRAHQLGAPSYP*C*LRMGPACVHGARWHCV*RSGVCPP 468
PG + G VS WS + P+P+PR HQLGAP+ P +G A VHG+ H V +GV PP
Sbjct: 474 PGDAAGPVSIGPWSTHFPVPQPRPHQLGAPADPRRRFWLGEAGVHGSWRHRVRGAGVRPP 295
Query: 469 KCKWRRQPVHCYLVAG*AHGEVPEANRRSLN 561
+ + RQPVH +LVAG AHGEVPEA+ R ++
Sbjct: 294 EREQGRQPVHRHLVAGGAHGEVPEADPRCVD 202
Score = 102 bits (218), Expect = 2e-021
Identities = 47/87 (54%), Positives = 52/87 (59%)
Frame = +3 / -2
Query: 291 WSFNRICQHLCVERIPSAART*GSPAGCAFLSMMLTSDGAGLCSWGQVALRMKVWRLSSQ 470
W +R CQH VE S A T SPAGCA S G G CSW A R + WR SS+
Sbjct: 472 WRCSRTCQHWSVEHTLSGAPTSASPAGCACRSTTPILAGGGRCSWVLAASRTRGWRSSSR 293
Query: 471 VQMATAACPLLSRCRLSTWRSSGS*SA 551
+ TAACP SRCR STWRSSGS*S+
Sbjct: 292 ARARTAACPSPSRCRRSTWRSSGS*SS 212
Score = 38.2 bits (77), Expect(2) = 3e-058
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2 / -3
Query: 233 IQGALDRMDNDYCRSALD 286
IQGALDR+ +DYC+SALD
Sbjct: 531 IQGALDRLTSDYCQSALD 478
Score = 26.3 bits (51), Expect(2) = 2e-041
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / +2
Query: 279 AERQ*SLSILSSAPWM 232
A+ Q*SL LSSAPWM
Sbjct: 485 ADWQ*SLVNLSSAPWM 532
>gb|BG417675.1|BG417675 HVSMEk0019B08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019B08f, mRNA sequence
Length = 444
Score = 212 bits (458), Expect = 2e-054
Identities = 86/109 (78%), Positives = 94/109 (86%)
Frame = +2 / +2
Query: 2 APRFSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATP 181
APRF+TY VL AHVW+C SLAR L P+QPTKLYCATDGRQ LQP LP+GYFGNVIFTATP
Sbjct: 116 APRFTTYPVLGAHVWRCPSLARGLSPKQPTKLYCATDGRQRLQPALPEGYFGNVIFTATP 295
Query: 182 LAEAGKVTSELAEGAAVIQGALDRMDNDYCRSALDYLELQPDLSALVRG 328
LA AGKVT LA+GA I AL+ MDN+YCRSALDYLE+QPDLSALVRG
Sbjct: 296 LAVAGKVTGSLADGATTIHAALEVMDNEYCRSALDYLEMQPDLSALVRG 442
Score = 148 bits (317), Expect = 5e-035
Identities = 68/94 (72%), Positives = 74/94 (78%)
Frame = -2 / -1
Query: 282 NAERQ*SLSILSSAPWMTAAPSASSLVTLPASASGVAVKMTLPKYPSGSGGCSV*RPSVA 103
+AERQ SLSI SSA W+ APSAS VTLPA+ASGVAVKMTLPK PSGS GCS RPSVA
Sbjct: 396 SAERQYSLSITSSAAWIVVAPSASEPVTLPATASGVAVKMTLPK*PSGSAGCSRCRPSVA 217
Query: 102 QYNLVGCSGGRLRARETHFQTCAASTAYVLNRGA 1
QY+LVGC G R RAR+ H TCA ST V+NRGA
Sbjct: 216 QYSLVGCFGDRPRARDGHRHTCAPSTG*VVNRGA 115
>gb|BM097912.2|BM097912 EBpi03_SQ002_A12_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_A12 5', mRNA sequence
Length = 509
Score = 175 bits (377), Expect = 3e-043
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +2 / +2
Query: 329 AHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAIS 508
AHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSA+ DGSLS+AIS
Sbjct: 2 AHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASRDGSLSVAIS 181
Query: 509 LQAEHMEKFRKLI 547
LQAEHMEKFRK+I
Sbjct: 182 LQAEHMEKFRKMI 220
Score = 140 bits (301), Expect = 8e-033
Identities = 58/75 (77%), Positives = 62/75 (82%)
Frame = -2 / -3
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S I FRNFS+CSAC+E+A DRLPS ALG T A PSYAMPPGPMNTGRP PKSAS +GRR
Sbjct: 225 SKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*MGRR 46
Query: 372 TQLVSPRFGQRKVCA 328
TQLVSPR G R VCA
Sbjct: 45 TQLVSPRLGHRNVCA 1
>gb|BU977226.1|BU977226 HA11A22u HA Hordeum vulgare subsp. vulgare cDNA clone HA11A22
3-PRIME, mRNA sequence
Length = 395
Score = 160 bits (343), Expect = 1e-038
Identities = 65/67 (97%), Positives = 66/67 (98%)
Frame = +2 / -1
Query: 347 PNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHM 526
PNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSA+ DGSLSIAISLQAEHM
Sbjct: 395 PNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASKDGSLSIAISLQAEHM 216
Query: 527 EKFRKLI 547
EKFRKLI
Sbjct: 215 EKFRKLI 195
Score = 144 bits (310), Expect = 5e-034
Identities = 59/67 (88%), Positives = 60/67 (89%)
Frame = -2 / +1
Query: 552 SPISFRNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRR 373
S ISFRNFSMCSACNE+AMDRLPS ALGRTNA PSYAMPPGPMNTG P PKSASWIGRR
Sbjct: 190 SRISFRNFSMCSACNEMAMDRLPSLLALGRTNASPSYAMPPGPMNTGLPQPKSASWIGRR 369
Query: 372 TQLVSPR 352
TQLV PR
Sbjct: 370 TQLVRPR 390
>gb|BU995236.1|BU995236 HM09K05r HM Hordeum vulgare subsp. vulgare cDNA clone HM09K05
5-PRIME, mRNA sequence
Length = 374
Score = 155 bits (332), Expect = 4e-037
Identities = 62/75 (82%), Positives = 65/75 (86%)
Frame = +2 / +3
Query: 2 APRFSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATP 181
APRFSTYAVL AHVW+C SLAR L PEQPTKLYCATDGRQ LQP LP+GYFGNVIFTATP
Sbjct: 147 APRFSTYAVLGAHVWRCASLARGLSPEQPTKLYCATDGRQRLQPALPEGYFGNVIFTATP 326
Query: 182 LAEAGKVTSELAEGA 226
LA AGK T LA+GA
Sbjct: 327 LAVAGKATGSLADGA 371
Score = 127 bits (273), Expect = 6e-029
Identities = 58/75 (77%), Positives = 61/75 (81%)
Frame = -2 / -2
Query: 225 APSASSLVTLPASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGRLRARETHF 46
APSAS V LPA+ASGVAVKMTLPK PSGS GCS RPSVAQY+LVGCSG R RAR+ H
Sbjct: 370 APSASEPVALPATASGVAVKMTLPK*PSGSAGCSRCRPSVAQYSLVGCSGDRPRARDAHR 191
Query: 45 QTCAASTAYVLNRGA 1
TCA STA VLNRGA
Sbjct: 190 HTCAPSTA*VLNRGA 146
>gb|BU977225.1|BU977225 HA11A22r HA Hordeum vulgare subsp. vulgare cDNA clone HA11A22
5-PRIME, mRNA sequence
Length = 218
Score = 152 bits (326), Expect = 3e-036
Identities = 60/65 (92%), Positives = 63/65 (96%)
Frame = +2 / +3
Query: 2 APRFSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATP 181
APRFSTYAVLAAHVW+CVSLAR+L PEQPTKLYCATDGRQ LQPPLP+GYFGNVIFTATP
Sbjct: 24 APRFSTYAVLAAHVWRCVSLARNLAPEQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATP 203
Query: 182 LAEAG 196
LAEAG
Sbjct: 204 LAEAG 218
Score = 130 bits (279), Expect = 9e-030
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = -2 / -2
Query: 195 PASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGRLRARETHFQTCAASTAYV 16
PASASGVAVKMT PK PSGSGGCS RPSVAQY+LVGCSG RLRARET QTCAASTAYV
Sbjct: 217 PASASGVAVKMTFPK*PSGSGGCSRCRPSVAQYSLVGCSGARLRARETQRQTCAASTAYV 38
Query: 15 LNRGA 1
LNRGA
Sbjct: 37 LNRGA 23
>gb|CD663895.1|CD663895 UCRHV18_07aa08_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_07aa08, mRNA sequence
Length = 287
Score = 149 bits (319), Expect = 3e-035
Identities = 60/63 (95%), Positives = 61/63 (96%)
Frame = +2 / -1
Query: 350 NLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHME 529
NLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPS + DGSLSIAISLQAEHME
Sbjct: 278 NLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSGSKDGSLSIAISLQAEHME 99
Query: 530 KFR 538
KFR
Sbjct: 98 KFR 90
Score = 135 bits (289), Expect = 4e-031
Identities = 54/62 (87%), Positives = 55/62 (88%)
Frame = -2 / +1
Query: 537 RNFSMCSACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVS 358
RNFSMCSACNE+AMDRLPS LGRTNA PSYAMPPGPMNTG P PKSASWIGRRTQLV
Sbjct: 91 RNFSMCSACNEMAMDRLPSLLPLGRTNASPSYAMPPGPMNTGLPQPKSASWIGRRTQLVR 270
Query: 357 PR 352
PR
Sbjct: 271 PR 276
>gb|CK125579.1|CK125579 BES1824109b18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B189 5-PRIME, mRNA sequence
Length = 739
Score = 89.0 bits (188), Expect(2) = 3e-031
Identities = 36/103 (34%), Positives = 61/103 (59%)
Frame = +2 / +2
Query: 233 IQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 412
I+ A+ R+D+ + RS +DYLEL+ + + +L + SW+ +PIHDADFGWG
Sbjct: 269 IKRAVARVDDAFVRSVIDYLELESEKGSQAARGQFMPETDLWVVSWLGMPIHDADFGWGC 448
Query: 413 PVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRK 541
P F+ P + G A+V + + D +S+ +L+ E+++ F K
Sbjct: 449 PKFVAPAQMFGSGTAYVTQAPDKDDGVSVLFALEPEYLQCFEK 577
Score = 66.1 bits (138), Expect(2) = 3e-031
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2 / +2
Query: 2 APRFSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATP 181
AP STY L AH+W+ + +AR L P+ ++L + RQ L+P LP YFGN I
Sbjct: 35 APGVSTYCALTAHLWRAMCVARGLAPDAESRLRVPANIRQRLRPQLPANYFGNAIVRDLV 214
Query: 182 LAEAGKVTSE 211
G V S+
Sbjct: 215 TVRVGDVLSQ 244
>gb|BU996564.1|BU996564 HM14A08r HM Hordeum vulgare subsp. vulgare cDNA clone HM14A08
5-PRIME, mRNA sequence
Length = 556
Score = 73.5 bits (154), Expect(2) = 2e-026
Identities = 30/77 (38%), Positives = 46/77 (59%)
Frame = +2 / +2
Query: 233 IQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 412
I+ A+ R+D+ + RS +DYLEL+ + + +L + SW+ +PIHDADFGWG
Sbjct: 311 IKRAVARVDDAFVRSVIDYLELESEKGSQAARGQFMPETDLWVVSWLGMPIHDADFGWGC 490
Query: 413 PVFMGPGGIAYEGLAFV 463
P F+ P + G A+V
Sbjct: 491 PKFVAPAQMFGSGTAYV 541
Score = 66.1 bits (138), Expect(2) = 2e-026
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2 / +2
Query: 2 APRFSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATP 181
AP STY L AH+W+ + +AR L P+ ++L + RQ L+P LP YFGN I
Sbjct: 77 APGVSTYCALTAHLWRAMCVARGLAPDAESRLRVPANIRQRLRPQLPANYFGNAIVRDLV 256
Query: 182 LAEAGKVTSE 211
G V S+
Sbjct: 257 TVRVGDVLSQ 286
>gb|AV931360.1|AV931360 AV931360 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19i05 3', mRNA sequence
Length = 690
Score = 72.1 bits (151), Expect(2) = 3e-026
Identities = 31/77 (40%), Positives = 42/77 (54%)
Frame = +2 / -2
Query: 308 LSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDG 487
L A A PN+ + SW+R+P +D DFG GRP F P + EGL +LPS GDG
Sbjct: 332 LVATADAADMVLSPNIEVDSWLRIPFYDMDFGGGRPFFFMPSYLPVEGLLILLPSFLGDG 153
Query: 488 SLSIAISLQAEHMEKFR 538
S+ + L + M F+
Sbjct: 152 SVDAYVPLFSRDMNTFK 102
Score = 66.6 bits (139), Expect(2) = 3e-026
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +2 / -2
Query: 14 STYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAEA 193
ST + AH+W+ +++AR L + T + A DGR + P +PDGY GNVI A P A
Sbjct: 641 STLQCVVAHLWRSMTMARGLDGGETTSVAIAVDGRARMSPQVPDGYTGNVILWARPTTTA 462
Query: 194 GKVTS 208
G++ +
Sbjct: 461 GELVT 447
>gb|AV926476.1|AV926476 AV926476 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19i05 5', mRNA sequence
Length = 616
Score = 72.1 bits (151), Expect(2) = 3e-026
Identities = 31/77 (40%), Positives = 42/77 (54%)
Frame = +2 / +3
Query: 308 LSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDG 487
L A A PN+ + SW+R+P +D DFG GRP F P + EGL +LPS GDG
Sbjct: 369 LVATADAADMVLSPNIEVDSWLRIPFYDMDFGGGRPFFFMPSYLPVEGLLILLPSFLGDG 548
Query: 488 SLSIAISLQAEHMEKFR 538
S+ + L + M F+
Sbjct: 549 SVDAYVPLFSRDMNTFK 599
Score = 66.6 bits (139), Expect(2) = 3e-026
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +2 / +3
Query: 14 STYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAEA 193
ST + AH+W+ +++AR L + T + A DGR + P +PDGY GNVI A P A
Sbjct: 60 STLQCVVAHLWRSMTMARGLDGGETTSVAIAVDGRARMSPQVPDGYTGNVILWARPTTTA 239
Query: 194 GKVTS 208
G++ +
Sbjct: 240 GELVT 254
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 476,409,270
Number of Sequences: 312970
Number of extensions: 8863093
Number of successful extensions: 74918
Number of sequences better than 1.0e-020: 32
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10189104838
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)