TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591297.2.1
(786 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan tr... 253 5e-075
gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA li... 253 5e-075
gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA li... 253 5e-075
gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. v... 253 5e-075
gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA li... 253 3e-073
gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA li... 248 7e-070
gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare su... 249 9e-068
gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. v... 238 9e-068
gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. v... 245 1e-066
gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA li... 244 2e-066
gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA li... 231 2e-062
gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiol... 221 6e-060
gb|BM100605.2|BM100605 EBma01_SQ005_L10_R maternal, 4 DPA, ... 197 2e-055
gb|AV915915.1|AV915915 AV915915 K. Sato unpublished cDNA li... 189 2e-051
gb|AJ433692.1|AJ433692 AJ433692 S00002 Hordeum vulgare subs... 176 5e-046
gb|BQ471752.1|BQ471752 HV03F21r HV Hordeum vulgare subsp. v... 163 2e-045
gb|BM445218.2|BM445218 EBem09_SQ007_M07_R embryo, 1 Day ger... 171 1e-044
gb|BM816264.1|BM816264 HB01H02_T3.ab1 HB Hordeum vulgare su... 120 2e-037
gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedl... 106 7e-034
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 103 2e-032
gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedl... 106 3e-032
gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. v... 104 3e-032
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 107 2e-031
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 107 2e-031
gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. v... 107 2e-031
gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. v... 107 2e-031
gb|BG301219.2|BG301219 HVSMEb0019P17f Hordeum vulgare seedl... 127 2e-031
gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedl... 104 1e-030
gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. v... 106 3e-030
gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. v... 104 1e-029
gb|BG300595.1|BG300595 HVSMEb0017J24f Hordeum vulgare seedl... 103 4e-029
gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. v... 95 5e-027
gb|BU995150.1|BU995150 HM09F19r HM Hordeum vulgare subsp. v... 94 2e-026
gb|AV921032.1|AV921032 AV921032 K. Sato unpublished cDNA li... 110 2e-026
gb|CB881291.1|CB881291 HM09F19w HM Hordeum vulgare subsp. v... 92 1e-025
gb|CB876191.1|CB876191 HX10I22w HX Hordeum vulgare subsp. v... 90 4e-025
gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedl... 105 8e-025
gb|BU971930.1|BU971930 HB20B14r BC Hordeum vulgare subsp. v... 104 1e-024
gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedl... 103 2e-024
gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiol... 104 3e-024
gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. v... 111 5e-024
gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. v... 111 5e-024
gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-a... 103 5e-024
gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA li... 77 9e-024
gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, red... 107 8e-023
gb|BG309189.1|BG309189 HVSMEc0004M02f Hordeum vulgare seedl... 106 1e-022
gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedl... 99 2e-022
gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedl... 96 4e-022
emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotra... 77 9e-022
gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA li... 77 1e-021
gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA li... 77 1e-021
gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachi... 77 1e-021
gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA li... 77 1e-021
gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA li... 77 1e-021
gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA li... 77 1e-021
gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedl... 94 1e-021
gb|BF255206.2|BF255206 HVSMEf0006D21f Hordeum vulgare seedl... 75 2e-021
gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA li... 77 5e-021
gb|BF256789.2|BF256789 HVSMEf0011A08f Hordeum vulgare seedl... 86 5e-021
>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase
Length = 1175
Score = 253 bits (547), Expect(3) = 5e-075
Identities = 97/111 (87%), Positives = 102/111 (91%)
Frame = -2 / +2
Query: 713 SADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
S DLGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA
Sbjct: 605 SKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEA 784
Query: 533 RFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
+ CATQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 785 KLCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 937
Score = 177 bits (382), Expect(2) = 2e-050
Identities = 84/123 (68%), Positives = 87/123 (70%)
Frame = +1 / -3
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 972 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 793
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPR 705
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW GYRTPR
Sbjct: 792 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYRTPR 613
Query: 706 SAL 714
S L
Sbjct: 612 SLL 604
Score = 67.0 bits (140), Expect(4) = 6e-023
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +3 / -2
Query: 594 RVGPVRLLAPAAGRPVVGVPQAGVELHRLAERVPHAQV 707
R+GPVRLL P+ RPVV VPQA VELHRL E VPHA+V
Sbjct: 724 RLGPVRLLPPSPSRPVVRVPQARVELHRLVEGVPHAEV 611
Score = 41.4 bits (84), Expect(2) = 2e-050
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -2
Query: 717 VLEHPDRHVVHEERDHV 767
VLEHPDR VVH+ERDHV
Sbjct: 604 VLEHPDRRVVHKERDHV 554
Score = 39.1 bits (79), Expect(4) = 6e-023
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1 / -3
Query: 709 ALVFLNTRIGTSSTKNAIM 765
+L+FLNTRIG SSTKNAIM
Sbjct: 612 SLLFLNTRIGVSSTKNAIM 556
Score = 39.1 bits (79), Expect(3) = 5e-075
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / +2
Query: 764 MIAFFVDDVPIRVFKNT 714
MIAFFVDD PIRVFKN+
Sbjct: 557 MIAFFVDDTPIRVFKNS 607
Score = 29.9 bits (59), Expect(4) = 6e-023
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -3
Query: 343 HHHQTSRSRAHSGGTAA 393
+H QTSRSR HSG AA
Sbjct: 972 YHAQTSRSRLHSGDMAA 922
Score = 28.1 bits (55), Expect(3) = 5e-075
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +2
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 923 AAMSPECKRDRDV* 964
Score = 25.8 bits (50), Expect(4) = 6e-023
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 465 LRGVEVPELRLVPP 506
LRGV+V EL L+PP
Sbjct: 853 LRGVQVLELGLIPP 812
>gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j23 5', mRNA sequence
Length = 612
Score = 253 bits (547), Expect(3) = 5e-075
Identities = 97/111 (87%), Positives = 102/111 (91%)
Frame = -2 / +1
Query: 713 SADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
S DLGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA
Sbjct: 196 SKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEA 375
Query: 533 RFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
+ CATQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 376 KLCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 528
Score = 177 bits (382), Expect(2) = 2e-050
Identities = 84/123 (68%), Positives = 87/123 (70%)
Frame = +1 / -2
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 563 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 384
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPR 705
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW GYRTPR
Sbjct: 383 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYRTPR 204
Query: 706 SAL 714
S L
Sbjct: 203 SLL 195
Score = 67.0 bits (140), Expect(4) = 6e-023
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +3 / -1
Query: 594 RVGPVRLLAPAAGRPVVGVPQAGVELHRLAERVPHAQV 707
R+GPVRLL P+ RPVV VPQA VELHRL E VPHA+V
Sbjct: 315 RLGPVRLLPPSPSRPVVRVPQARVELHRLVEGVPHAEV 202
Score = 41.4 bits (84), Expect(2) = 2e-050
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -1
Query: 717 VLEHPDRHVVHEERDHV 767
VLEHPDR VVH+ERDHV
Sbjct: 195 VLEHPDRRVVHKERDHV 145
Score = 39.1 bits (79), Expect(4) = 6e-023
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1 / -2
Query: 709 ALVFLNTRIGTSSTKNAIM 765
+L+FLNTRIG SSTKNAIM
Sbjct: 203 SLLFLNTRIGVSSTKNAIM 147
Score = 39.1 bits (79), Expect(3) = 5e-075
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / +1
Query: 764 MIAFFVDDVPIRVFKNT 714
MIAFFVDD PIRVFKN+
Sbjct: 148 MIAFFVDDTPIRVFKNS 198
Score = 29.9 bits (59), Expect(4) = 6e-023
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -2
Query: 343 HHHQTSRSRAHSGGTAA 393
+H QTSRSR HSG AA
Sbjct: 563 YHAQTSRSRLHSGDMAA 513
Score = 28.1 bits (55), Expect(3) = 5e-075
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +1
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 514 AAMSPECKRDRDV* 555
Score = 25.8 bits (50), Expect(4) = 6e-023
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -1
Query: 465 LRGVEVPELRLVPP 506
LRGV+V EL L+PP
Sbjct: 444 LRGVQVLELGLIPP 403
>gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j23 3', mRNA sequence
Length = 571
Score = 253 bits (547), Expect(3) = 5e-075
Identities = 97/111 (87%), Positives = 102/111 (91%)
Frame = -2 / -3
Query: 713 SADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
S DLGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA
Sbjct: 515 SKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEA 336
Query: 533 RFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
+ CATQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 335 KLCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 183
Score = 177 bits (382), Expect(2) = 2e-050
Identities = 84/123 (68%), Positives = 87/123 (70%)
Frame = +1 / +1
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 148 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 327
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPR 705
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW GYRTPR
Sbjct: 328 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYRTPR 507
Query: 706 SAL 714
S L
Sbjct: 508 SLL 516
Score = 67.0 bits (140), Expect(4) = 6e-023
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +3 / +3
Query: 594 RVGPVRLLAPAAGRPVVGVPQAGVELHRLAERVPHAQV 707
R+GPVRLL P+ RPVV VPQA VELHRL E VPHA+V
Sbjct: 396 RLGPVRLLPPSPSRPVVRVPQARVELHRLVEGVPHAEV 509
Score = 41.4 bits (84), Expect(2) = 2e-050
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / +3
Query: 717 VLEHPDRHVVHEERDHV 767
VLEHPDR VVH+ERDHV
Sbjct: 516 VLEHPDRRVVHKERDHV 566
Score = 39.1 bits (79), Expect(4) = 6e-023
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1 / +1
Query: 709 ALVFLNTRIGTSSTKNAIM 765
+L+FLNTRIG SSTKNAIM
Sbjct: 508 SLLFLNTRIGVSSTKNAIM 564
Score = 39.1 bits (79), Expect(3) = 5e-075
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / -3
Query: 764 MIAFFVDDVPIRVFKNT 714
MIAFFVDD PIRVFKN+
Sbjct: 563 MIAFFVDDTPIRVFKNS 513
Score = 29.9 bits (59), Expect(4) = 6e-023
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / +1
Query: 343 HHHQTSRSRAHSGGTAA 393
+H QTSRSR HSG AA
Sbjct: 148 YHAQTSRSRLHSGDMAA 198
Score = 28.1 bits (55), Expect(3) = 5e-075
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / -3
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 197 AAMSPECKRDRDV* 156
Score = 25.8 bits (50), Expect(4) = 6e-023
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +3
Query: 465 LRGVEVPELRLVPP 506
LRGV+V EL L+PP
Sbjct: 267 LRGVQVLELGLIPP 308
>gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. vulgare cDNA clone HL01D12
3-PRIME, mRNA sequence
Length = 531
Score = 253 bits (547), Expect(3) = 5e-075
Identities = 97/111 (87%), Positives = 102/111 (91%)
Frame = -2 / +3
Query: 713 SADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
S DLGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA
Sbjct: 75 SKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEA 254
Query: 533 RFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
+ CATQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 255 KLCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 407
Score = 177 bits (382), Expect(2) = 2e-050
Identities = 84/123 (68%), Positives = 87/123 (70%)
Frame = +1 / -3
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 442 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 263
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPR 705
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW GYRTPR
Sbjct: 262 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYRTPR 83
Query: 706 SAL 714
S L
Sbjct: 82 SLL 74
Score = 67.0 bits (140), Expect(4) = 6e-023
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +3 / -2
Query: 594 RVGPVRLLAPAAGRPVVGVPQAGVELHRLAERVPHAQV 707
R+GPVRLL P+ RPVV VPQA VELHRL E VPHA+V
Sbjct: 194 RLGPVRLLPPSPSRPVVRVPQARVELHRLVEGVPHAEV 81
Score = 41.4 bits (84), Expect(2) = 2e-050
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -2
Query: 717 VLEHPDRHVVHEERDHV 767
VLEHPDR VVH+ERDHV
Sbjct: 74 VLEHPDRRVVHKERDHV 24
Score = 39.1 bits (79), Expect(4) = 6e-023
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1 / -3
Query: 709 ALVFLNTRIGTSSTKNAIM 765
+L+FLNTRIG SSTKNAIM
Sbjct: 82 SLLFLNTRIGVSSTKNAIM 26
Score = 39.1 bits (79), Expect(3) = 5e-075
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / +3
Query: 764 MIAFFVDDVPIRVFKNT 714
MIAFFVDD PIRVFKN+
Sbjct: 27 MIAFFVDDTPIRVFKNS 77
Score = 29.9 bits (59), Expect(4) = 6e-023
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -3
Query: 343 HHHQTSRSRAHSGGTAA 393
+H QTSRSR HSG AA
Sbjct: 442 YHAQTSRSRLHSGDMAA 392
Score = 28.1 bits (55), Expect(3) = 5e-075
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +3
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 393 AAMSPECKRDRDV* 434
Score = 25.8 bits (50), Expect(4) = 6e-023
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 465 LRGVEVPELRLVPP 506
LRGV+V EL L+PP
Sbjct: 323 LRGVQVLELGLIPP 282
>gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c01 5', mRNA sequence
Length = 505
Score = 253 bits (547), Expect(3) = 3e-073
Identities = 97/111 (87%), Positives = 102/111 (91%)
Frame = -2 / +3
Query: 713 SADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
S DLGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA
Sbjct: 111 SKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEA 290
Query: 533 RFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
+ CATQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 291 KLCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 443
Score = 177 bits (382), Expect(2) = 6e-048
Identities = 84/123 (68%), Positives = 87/123 (70%)
Frame = +1 / -1
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 478 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 299
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPR 705
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW GYRTPR
Sbjct: 298 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYRTPR 119
Query: 706 SAL 714
S L
Sbjct: 118 SLL 110
Score = 33.1 bits (66), Expect(2) = 6e-048
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1 / -1
Query: 709 ALVFLNTRIGTSSTKN 756
+L+FLNTRIG SSTKN
Sbjct: 118 SLLFLNTRIGVSSTKN 71
Score = 33.1 bits (66), Expect(3) = 3e-073
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / +3
Query: 755 FFVDDVPIRVFKNT 714
FFVDD PIRVFKN+
Sbjct: 72 FFVDDTPIRVFKNS 113
Score = 28.1 bits (55), Expect(3) = 3e-073
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +3
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 429 AAMSPECKRDRDV* 470
>gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c01 3', mRNA sequence
Length = 628
Score = 248 bits (536), Expect(3) = 7e-070
Identities = 95/112 (84%), Positives = 101/112 (90%)
Frame = -2 / -1
Query: 716 TSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAE 537
T+ GVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAE
Sbjct: 571 TARTSGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAE 392
Query: 536 ARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
A+ CATQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 391 AKLCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 236
Score = 172 bits (370), Expect(2) = 2e-045
Identities = 81/119 (68%), Positives = 84/119 (70%)
Frame = +1 / +3
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 201 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 380
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTP 702
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW GYRTP
Sbjct: 381 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYRTP 557
Score = 30.4 bits (60), Expect(2) = 2e-045
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +3
Query: 717 VLEHPDRHVVHEER 758
VLEHPDR V H+ER
Sbjct: 570 VLEHPDRXVXHKER 611
Score = 28.1 bits (55), Expect(3) = 7e-070
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / -1
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 250 AAMSPECKRDRDV* 209
Score = 26.7 bits (52), Expect(3) = 7e-070
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2 / -3
Query: 755 FFVDDVPIRVFKNT 714
FFV PIRVFKN+
Sbjct: 608 FFVXXTPIRVFKNS 567
>gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02B10_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 575
Score = 249 bits (538), Expect(2) = 9e-068
Identities = 95/108 (87%), Positives = 100/108 (92%)
Frame = -2 / +3
Query: 704 LGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFC 525
LGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA+ C
Sbjct: 3 LGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEAKLC 182
Query: 524 ATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
ATQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 183 ATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 326
Score = 174 bits (375), Expect = 4e-043
Identities = 82/120 (68%), Positives = 85/120 (70%)
Frame = +1 / -2
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 361 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 182
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPR 705
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW GYRTPR
Sbjct: 181 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYRTPR 2
Score = 28.1 bits (55), Expect(2) = 9e-068
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +3
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 312 AAMSPECKRDRDV* 353
>gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L03
3-PRIME, mRNA sequence
Length = 378
Score = 238 bits (514), Expect(2) = 9e-068
Identities = 91/101 (90%), Positives = 95/101 (94%)
Frame = -2 / +3
Query: 713 SADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
S DLGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA
Sbjct: 75 SKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEA 254
Query: 533 RFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCT 411
+ CATQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCT
Sbjct: 255 KLCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCT 377
Score = 167 bits (360), Expect(2) = 2e-047
Identities = 77/101 (76%), Positives = 78/101 (77%)
Frame = +1 / -3
Query: 412 VQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVAQKRASAEASQPSTWKPR*EATK 591
VQ*L*MV LT NSG SHQRAPWVA ASA+ASQPSTWKPR*EATK
Sbjct: 376 VQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVAHNLASADASQPSTWKPR*EATK 197
Query: 592 GALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSAL 714
GALDQSVFSRPPRVAQSSAFHRLE*SFIGW GYRTPRS L
Sbjct: 196 GALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYRTPRSLL 74
Score = 41.4 bits (84), Expect(2) = 2e-047
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -2
Query: 717 VLEHPDRHVVHEERDHV 767
VLEHPDR VVH+ERDHV
Sbjct: 74 VLEHPDRRVVHKERDHV 24
Score = 39.1 bits (79), Expect(2) = 9e-068
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / +3
Query: 764 MIAFFVDDVPIRVFKNT 714
MIAFFVDD PIRVFKN+
Sbjct: 27 MIAFFVDDTPIRVFKNS 77
>gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55I22
5-PRIME, mRNA sequence
Length = 397
Score = 245 bits (530), Expect(2) = 1e-066
Identities = 93/107 (86%), Positives = 98/107 (91%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCA 522
G RYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA+ CA
Sbjct: 2 GTRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEAKLCA 181
Query: 521 TQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
TQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 182 TQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 322
Score = 166 bits (358), Expect = 1e-040
Identities = 79/119 (66%), Positives = 82/119 (68%)
Frame = +1 / -2
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 357 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 178
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTP 702
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW GY P
Sbjct: 177 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYLVP 1
Score = 28.1 bits (55), Expect(2) = 1e-066
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +2
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 308 AAMSPECKRDRDV* 349
>gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e01 3', mRNA sequence
Length = 541
Score = 244 bits (528), Expect(2) = 2e-066
Identities = 93/106 (87%), Positives = 98/106 (92%)
Frame = -2 / -1
Query: 698 VRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCAT 519
VRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA+ CAT
Sbjct: 541 VRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEAKLCAT 362
Query: 518 QGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
QGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 361 QGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 224
Score = 166 bits (358), Expect = 1e-040
Identities = 79/117 (67%), Positives = 82/117 (70%)
Frame = +1 / +3
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 189 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 368
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYR 696
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW GYR
Sbjct: 369 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYR 539
Score = 28.1 bits (55), Expect(2) = 2e-066
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / -1
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 238 AAMSPECKRDRDV* 197
>gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e01 5', mRNA sequence
Length = 566
Score = 231 bits (499), Expect(2) = 2e-062
Identities = 88/103 (85%), Positives = 93/103 (90%)
Frame = -2 / +1
Query: 689 PFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCATQGA 510
P PMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA+ CATQGA
Sbjct: 10 PLRPPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEAKLCATQGA 189
Query: 509 RWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
RWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 190 RWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 318
Score = 155 bits (333), Expect = 3e-037
Identities = 76/115 (66%), Positives = 79/115 (68%)
Frame = +1 / -1
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 353 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 174
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNG 690
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIG G
Sbjct: 173 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGGRRG 9
Score = 28.1 bits (55), Expect(2) = 2e-062
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +1
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 304 AAMSPECKRDRDV* 345
>gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03O01r 3', mRNA sequence
Length = 497
Score = 221 bits (477), Expect(3) = 6e-060
Identities = 84/96 (87%), Positives = 89/96 (92%)
Frame = -2 / -3
Query: 668 LYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCATQGARWWDQPE 489
LYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA+ CATQGARWWDQPE
Sbjct: 495 LYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEAKLCATQGARWWDQPE 316
Query: 488 FRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
F+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 315 FQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 208
Score = 147 bits (316), Expect = 6e-035
Identities = 72/108 (66%), Positives = 75/108 (69%)
Frame = +1 / +2
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 173 YHAXTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 352
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*S 669
ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*S
Sbjct: 353 HNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*S 496
Score = 28.1 bits (55), Expect(3) = 6e-060
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / -3
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 222 AAMSPECKRDRDV* 181
Score = 22.6 bits (43), Expect(3) = 6e-060
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3 / -3
Query: 79 YLKLSSSLVCISIQLLARKKKKKNSR 2
Y + S VC+ ++ L KKKKK +
Sbjct: 81 YEEFVSLRVCMLMRALLFKKKKKKKK 4
>gb|BM100605.2|BM100605 EBma01_SQ005_L10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_L10 5', mRNA sequence
Length = 414
Score = 197 bits (424), Expect(2) = 2e-055
Identities = 74/80 (92%), Positives = 76/80 (95%)
Frame = -2 / +3
Query: 713 SADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
S DLGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA
Sbjct: 174 SKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEA 353
Query: 533 RFCATQGARWWDQPEFRDLD 474
+ CATQGARWWDQPEF+DLD
Sbjct: 354 KLCATQGARWWDQPEFQDLD 413
Score = 160 bits (345), Expect(2) = 3e-045
Identities = 68/76 (89%), Positives = 69/76 (90%)
Frame = +1 / -3
Query: 487 NSGWSHQRAPWVAQKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE* 666
NSG SHQRAPWVA ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*
Sbjct: 400 NSG*SHQRAPWVAHNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE* 221
Query: 667 SFIGWLNGYRTPRSAL 714
SFIGW GYRTPRS L
Sbjct: 220 SFIGWSKGYRTPRSLL 173
Score = 41.4 bits (84), Expect(2) = 3e-045
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -2
Query: 717 VLEHPDRHVVHEERDHV 767
VLEHPDR VVH+ERDHV
Sbjct: 173 VLEHPDRRVVHKERDHV 123
Score = 39.1 bits (79), Expect(2) = 2e-055
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / +3
Query: 764 MIAFFVDDVPIRVFKNT 714
MIAFFVDD PIRVFKN+
Sbjct: 126 MIAFFVDDTPIRVFKNS 176
>gb|AV915915.1|AV915915 AV915915 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16j19 5', mRNA sequence
Length = 331
Score = 189 bits (407), Expect(2) = 2e-051
Identities = 71/76 (93%), Positives = 72/76 (94%)
Frame = -2 / +1
Query: 713 SADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
S DLGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA
Sbjct: 103 SKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEA 282
Query: 533 RFCATQGARWWDQPEF 486
+ CATQGARWWDQPEF
Sbjct: 283 KLCATQGARWWDQPEF 330
Score = 160 bits (345), Expect(2) = 7e-043
Identities = 68/76 (89%), Positives = 69/76 (90%)
Frame = +1 / -3
Query: 487 NSGWSHQRAPWVAQKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE* 666
NSG SHQRAPWVA ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*
Sbjct: 329 NSG*SHQRAPWVAHNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE* 150
Query: 667 SFIGWLNGYRTPRSAL 714
SFIGW GYRTPRS L
Sbjct: 149 SFIGWSKGYRTPRSLL 102
Score = 33.1 bits (66), Expect(2) = 7e-043
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1 / -3
Query: 709 ALVFLNTRIGTSSTKN 756
+L+FLNTRIG SSTKN
Sbjct: 110 SLLFLNTRIGVSSTKN 63
Score = 33.1 bits (66), Expect(2) = 2e-051
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / +1
Query: 755 FFVDDVPIRVFKNT 714
FFVDD PIRVFKN+
Sbjct: 64 FFVDDTPIRVFKNS 105
>gb|AJ433692.1|AJ433692 AJ433692 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200068G07F1, mRNA sequence
Length = 399
Score = 176 bits (379), Expect(2) = 5e-046
Identities = 67/79 (84%), Positives = 72/79 (91%)
Frame = -2 / +2
Query: 617 EKTDWSNAPFVASYRGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRR 438
EKTDWS APFVASYRGFHVDGCEASAEA+ CATQGARWWDQPEF+DLDAAQYRRLA VR+
Sbjct: 5 EKTDWSKAPFVASYRGFHVDGCEASAEAKLCATQGARWWDQPEFQDLDAAQYRRLAWVRK 184
Query: 437 RYTIYNYCTDRDRYGAAVP 381
+TIYNYCTDR+RY A P
Sbjct: 185 EHTIYNYCTDRERYAAMSP 241
Score = 109 bits (233), Expect = 2e-023
Identities = 55/91 (60%), Positives = 58/91 (63%)
Frame = +1 / -1
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 276 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 97
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSVFS 618
ASA+ASQPSTWKPR*EATKGALDQSVFS
Sbjct: 96 HNLASADASQPSTWKPR*EATKGALDQSVFS 4
Score = 28.1 bits (55), Expect(2) = 5e-046
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +2
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 227 AAMSPECKRDRDV* 268
>gb|BQ471752.1|BQ471752 HV03F21r HV Hordeum vulgare subsp. vulgare cDNA clone HV03F21
5-PRIME, mRNA sequence
Length = 502
Score = 163 bits (351), Expect(2) = 2e-045
Identities = 63/68 (92%), Positives = 64/68 (94%)
Frame = -2 / +1
Query: 713 SADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
S DLGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGFHVDGCEASAEA
Sbjct: 298 SKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEA 477
Query: 533 RFCATQGA 510
+ CATQGA
Sbjct: 478 KLCATQGA 501
Score = 145 bits (311), Expect(2) = 1e-040
Identities = 61/68 (89%), Positives = 62/68 (91%)
Frame = +1 / -3
Query: 511 APWVAQKRASAEASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNG 690
APWVA ASA+ASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW G
Sbjct: 500 APWVAHNLASADASQPSTWKPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKG 321
Query: 691 YRTPRSAL 714
YRTPRS L
Sbjct: 320 YRTPRSLL 297
Score = 41.4 bits (84), Expect(2) = 1e-040
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -2
Query: 717 VLEHPDRHVVHEERDHV 767
VLEHPDR VVH+ERDHV
Sbjct: 297 VLEHPDRRVVHKERDHV 247
Score = 39.1 bits (79), Expect(2) = 2e-045
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / +1
Query: 764 MIAFFVDDVPIRVFKNT 714
MIAFFVDD PIRVFKN+
Sbjct: 250 MIAFFVDDTPIRVFKNS 300
>gb|BM445218.2|BM445218 EBem09_SQ007_M07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_M07 5', mRNA sequence
Length = 419
Score = 171 bits (369), Expect(2) = 1e-044
Identities = 65/77 (84%), Positives = 70/77 (90%)
Frame = -2 / +2
Query: 611 TDWSNAPFVASYRGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRY 432
TDWS APFVASYRGFHVDGCEASAEA+ CATQGARWWDQPEF+DLDAAQYRRLA VR+ +
Sbjct: 2 TDWSKAPFVASYRGFHVDGCEASAEAKLCATQGARWWDQPEFQDLDAAQYRRLAWVRKEH 181
Query: 431 TIYNYCTDRDRYGAAVP 381
TIYNYCTDR+RY A P
Sbjct: 182 TIYNYCTDRERYAAMSP 232
Score = 105 bits (223), Expect = 4e-022
Identities = 53/89 (59%), Positives = 56/89 (62%)
Frame = +1 / -3
Query: 346 HHQTSRSRAHSGGTAAP*RSRSVQ*L*MV*RRLTXXXXXXXXXXXXLNSGWSHQRAPWVA 525
+H + G A RSRSVQ*L*MV LT NSG SHQRAPWVA
Sbjct: 267 YHAQTSRSRLHSGDMAAYRSRSVQ*L*MVCSFLTQARRRYCAASRSWNSG*SHQRAPWVA 88
Query: 526 QKRASAEASQPSTWKPR*EATKGALDQSV 612
ASA+ASQPSTWKPR*EATKGALDQSV
Sbjct: 87 HNLASADASQPSTWKPR*EATKGALDQSV 1
Score = 28.1 bits (55), Expect(2) = 1e-044
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +2
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 218 AAMSPECKRDRDV* 259
>gb|BM816264.1|BM816264 HB01H02_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01H02_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 814
Score = 120 bits (257), Expect(3) = 2e-037
Identities = 46/49 (93%), Positives = 46/49 (93%)
Frame = -2 / +3
Query: 713 SADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGF 567
S DLGVRYPF QPMKLYSSLWNADDWATRGGREKTDWS APFVASYRGF
Sbjct: 606 SKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGF 752
Score = 107 bits (229), Expect(2) = 2e-029
Identities = 46/49 (93%), Positives = 46/49 (93%)
Frame = +1 / -1
Query: 568 KPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWLNGYRTPRSAL 714
KPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGW GYRTPRS L
Sbjct: 751 KPR*EATKGALDQSVFSRPPRVAQSSAFHRLE*SFIGWSKGYRTPRSLL 605
Score = 41.4 bits (84), Expect(2) = 2e-029
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -3
Query: 717 VLEHPDRHVVHEERDHV 767
VLEHPDR VVH+ERDHV
Sbjct: 605 VLEHPDRRVVHKERDHV 555
Score = 39.1 bits (79), Expect(3) = 2e-037
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / +3
Query: 764 MIAFFVDDVPIRVFKNT 714
MIAFFVDD PIRVFKN+
Sbjct: 558 MIAFFVDDTPIRVFKNS 608
Score = 34.1 bits (68), Expect(3) = 2e-037
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 572 GFHVDGCEASAEARFCATQ 516
G HV GC+ASAEA C T+
Sbjct: 746 GLHVXGCKASAEANLCPTR 802
>gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001G10f, mRNA sequence
Length = 841
Score = 106 bits (226), Expect(3) = 7e-034
Identities = 39/57 (68%), Positives = 46/57 (80%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
G+ +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C +A R
Sbjct: 56 GIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTAGGR 226
Score = 47.8 bits (98), Expect(3) = 7e-034
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD + +R+ V+ Y IYNYCTD R+ VP EC+
Sbjct: 296 QELDLTRQQRMRWVQSNYMIYNYCTDPKRFAQGVPAECS 412
Score = 27.6 bits (54), Expect(3) = 7e-034
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2 / +2
Query: 758 AFFVDDVPIRVFKN 717
+F VDD+PIR FKN
Sbjct: 2 SFMVDDMPIRDFKN 43
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEA)
Length = 1174
Score = 103 bits (220), Expect(3) = 2e-032
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = -2 / +1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
G+ +P +QPM+LYSSLWNADDWAT+G R KTDWS+APF ASYRGF D C +A R
Sbjct: 556 GIAFPKNQPMRLYSSLWNADDWATQGARVKTDWSHAPFSASYRGFKADACVVTAGGR 726
Score = 44.6 bits (91), Expect(3) = 2e-032
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD +R+ V+ Y IYNYCTD R VP EC+
Sbjct: 805 QELDLTLQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECS 921
Score = 28.6 bits (56), Expect(3) = 2e-032
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR FKN
Sbjct: 499 IIFMVDDMPIRDFKN 543
>gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013D21f, mRNA sequence
Length = 830
Score = 106 bits (226), Expect(3) = 3e-032
Identities = 39/57 (68%), Positives = 46/57 (80%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
G+ +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C +A R
Sbjct: 215 GIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTAGGR 385
Score = 41.4 bits (84), Expect(3) = 3e-032
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD +R+ V+ Y IYNYCTD R VP +C+
Sbjct: 464 QELDLTLQQRMRWVQSNYMIYNYCTDPKRVTKGVPGKCS 580
Score = 28.6 bits (56), Expect(3) = 3e-032
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR FKN
Sbjct: 158 IIFMVDDMPIRDFKN 202
>gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
5-PRIME, mRNA sequence
Length = 604
Score = 104 bits (222), Expect(3) = 3e-032
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = -2 / +1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
G+ +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C + R
Sbjct: 88 GIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTVGGR 258
Score = 46.0 bits (94), Expect(3) = 3e-032
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD + +R+ V+ Y IYNYCTD R VP EC+
Sbjct: 337 QELDLTRQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECS 453
Score = 25.8 bits (50), Expect(3) = 3e-032
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 755 FFVDDVPIRVFKN 717
F VDD+PIR F+N
Sbjct: 37 FLVDDMPIRDFRN 75
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEB)
Length = 1226
Score = 107 bits (228), Expect(2) = 2e-031
Identities = 40/59 (67%), Positives = 47/59 (79%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFC 525
GV +P SQPM+LY+SLWNADDWAT+GGR KTDWS APFVAS+R F+ D C S A+ C
Sbjct: 617 GVSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRC 793
Score = 48.7 bits (100), Expect(2) = 2e-031
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
++L YRR+ V+R++ IYNYCTD R VP EC
Sbjct: 845 QELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAEC 958
>gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D09
5-PRIME, mRNA sequence
Length = 619
Score = 107 bits (228), Expect(2) = 2e-031
Identities = 40/59 (67%), Positives = 47/59 (79%)
Frame = -2 / +1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFC 525
GV +P SQPM+LY+SLWNADDWAT+GGR KTDWS APFVAS+R F+ D C S A+ C
Sbjct: 91 GVSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRC 267
Score = 48.7 bits (100), Expect(2) = 2e-031
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
++L YRR+ V+R++ IYNYCTD R VP EC
Sbjct: 319 QELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAEC 432
>gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. vulgare cDNA clone HI01A16
3-PRIME, mRNA sequence
Length = 545
Score = 107 bits (228), Expect(2) = 2e-031
Identities = 40/59 (67%), Positives = 47/59 (79%)
Frame = -2 / -2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFC 525
GV +P SQPM+LY+SLWNADDWAT+GGR KTDWS APFVAS+R F+ D C S A+ C
Sbjct: 529 GVSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRC 353
Score = 48.7 bits (100), Expect(2) = 2e-031
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / -2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
++L YRR+ V+R++ IYNYCTD R VP EC
Sbjct: 301 QELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAEC 188
>gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. vulgare cDNA clone HF19F01
5-PRIME, mRNA sequence
Length = 444
Score = 107 bits (228), Expect(2) = 2e-031
Identities = 40/59 (67%), Positives = 47/59 (79%)
Frame = -2 / +2
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFC 525
GV +P SQPM+LY+SLWNADDWAT+GGR KTDWS APFVAS+R F+ D C S A+ C
Sbjct: 20 GVSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRC 196
Score = 48.7 bits (100), Expect(2) = 2e-031
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
++L YRR+ V+R++ IYNYCTD R VP EC
Sbjct: 248 QELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAEC 361
>gb|BG301219.2|BG301219 HVSMEb0019P17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019P17f, mRNA sequence
Length = 436
Score = 127 bits (272), Expect(2) = 2e-031
Identities = 48/59 (81%), Positives = 53/59 (89%)
Frame = -2 / +3
Query: 557 GCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
GCEASAEA+ CATQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 3 GCEASAEAKLCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 179
Score = 28.1 bits (55), Expect(2) = 2e-031
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +3
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 165 AAMSPECKRDRDV* 206
>gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013D01f, mRNA sequence
Length = 542
Score = 104 bits (222), Expect(2) = 1e-030
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = -2 / +1
Query: 698 VRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFC 525
V +P SQPM+LY+SLWNADDWAT+GGR KTDWS APFVAS+R F+ D C S A+ C
Sbjct: 1 VSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRC 174
Score = 48.7 bits (100), Expect(2) = 1e-030
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2 / +1
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPEC 372
++L YRR+ V+R++ IYNYCTD R VP EC
Sbjct: 226 QELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAEC 339
>gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. vulgare cDNA clone HM01J07
5-PRIME, mRNA sequence
Length = 491
Score = 106 bits (226), Expect(3) = 3e-030
Identities = 39/57 (68%), Positives = 46/57 (80%)
Frame = -2 / +3
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
G+ +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C +A R
Sbjct: 168 GIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTAGGR 338
Score = 34.5 bits (69), Expect(3) = 3e-030
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2 / +3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTD 408
++LD + +R+ V+ Y IYNYCTD
Sbjct: 408 QELDLTRQQRMRWVQSNYMIYNYCTD 485
Score = 28.6 bits (56), Expect(3) = 3e-030
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR FKN
Sbjct: 111 IIFMVDDMPIRDFKN 155
>gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. vulgare cDNA clone HP05D02
5-PRIME, mRNA sequence
Length = 632
Score = 104 bits (222), Expect(3) = 1e-029
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = -2 / +3
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
G+ +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF SYRGF D C +A R
Sbjct: 306 GIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSXSYRGFKADACVVTAGGR 476
Score = 34.5 bits (69), Expect(3) = 1e-029
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2 / +3
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTD 408
++LD + +R+ V+ Y IYNYCTD
Sbjct: 546 QELDLTRQQRMRWVQSNYMIYNYCTD 623
Score = 28.6 bits (56), Expect(3) = 1e-029
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR FKN
Sbjct: 249 IIFMVDDMPIRDFKN 293
>gb|BG300595.1|BG300595 HVSMEb0017J24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017J24f, mRNA sequence
Length = 872
Score = 103 bits (219), Expect(3) = 4e-029
Identities = 44/85 (51%), Positives = 52/85 (61%)
Frame = -2 / -2
Query: 785 PSSGTSNMIAFFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTD 606
P GT I F V D P + T G R P +QP+++ SSLWN DDWAT+G R KTD
Sbjct: 700 PFFGTPRPIIFMVGDNPDQRISRTWRGRGSRSPKNQPIRV*SSLWNPDDWATQGARVKTD 521
Query: 605 WSNAPFVASYRGFHVDGCEASAEAR 531
WS+APF ASYRGF D C +A R
Sbjct: 520 WSHAPFSASYRGFKADACVVTAGGR 446
Score = 44.6 bits (91), Expect(3) = 4e-029
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -2 / -2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD +R+ V+ Y IYNYCTD R VP EC+
Sbjct: 367 QELDLTLQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECS 251
Score = 21.7 bits (41), Expect(3) = 4e-029
Identities = 4/9 (44%), Positives = 8/9 (88%)
Frame = -2 / -3
Query: 302 CNVCMVWYC 276
CN+C++ +C
Sbjct: 48 CNICLISFC 22
>gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
3-PRIME, mRNA sequence
Length = 579
Score = 95.0 bits (201), Expect(2) = 5e-027
Identities = 35/49 (71%), Positives = 39/49 (79%)
Frame = -2 / -2
Query: 677 PMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
PM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C + R
Sbjct: 578 PMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTVGGR 432
Score = 46.0 bits (94), Expect(2) = 5e-027
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2 / -2
Query: 485 RDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECA 369
++LD + +R+ V+ Y IYNYCTD R VP EC+
Sbjct: 353 QELDLTRQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECS 237
>gb|BU995150.1|BU995150 HM09F19r HM Hordeum vulgare subsp. vulgare cDNA clone HM09F19
5-PRIME, mRNA sequence
Length = 538
Score = 94.1 bits (199), Expect(2) = 2e-026
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = -2 / +2
Query: 716 TSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAE 537
T A +P QPM +YSS+WNADDWATRGG KTDWS+APFVA++R V+GC +A
Sbjct: 32 TQAQTVSAFPSPQPMAVYSSIWNADDWATRGGLVKTDWSHAPFVATFRDVRVEGCAWAAN 211
Query: 536 A 534
A
Sbjct: 212 A 214
Score = 44.6 bits (91), Expect(2) = 2e-026
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2 / +2
Query: 518 QGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
+G WW + + ++L Q +L R + +Y+YC D DR+ P
Sbjct: 269 EGRYWWKEKDMQELSVHQSHQLVWARAHHLVYDYCVDTDRFPVQPP 406
>gb|AV921032.1|AV921032 AV921032 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16j19 3', mRNA sequence
Length = 338
Score = 110 bits (235), Expect(2) = 2e-026
Identities = 41/52 (78%), Positives = 46/52 (88%)
Frame = -2 / -2
Query: 536 ARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
A+ CATQGARWWDQPEF+DLDAAQYRRLA VR+ +TIYNYCTDR+RY A P
Sbjct: 337 AKLCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDRERYAAMSP 182
Score = 28.1 bits (55), Expect(2) = 2e-026
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / -2
Query: 392 AAVPPECARDRDV* 351
AA+ PEC RDRDV*
Sbjct: 196 AAMSPECKRDRDV* 155
>gb|CB881291.1|CB881291 HM09F19w HM Hordeum vulgare subsp. vulgare cDNA clone HM09F19
3-PRIME, mRNA sequence
Length = 596
Score = 91.8 bits (194), Expect(2) = 1e-025
Identities = 34/52 (65%), Positives = 41/52 (78%)
Frame = -2 / -2
Query: 689 PFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
P QPM +YSS+WNADDWATRGG KTDWS+APFVA++R V+GC +A A
Sbjct: 595 PSPQPMAVYSSIWNADDWATRGGLVKTDWSHAPFVATFRDVRVEGCAWAANA 440
Score = 44.6 bits (91), Expect(2) = 1e-025
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2 / -2
Query: 518 QGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
+G WW + + ++L Q +L R + +Y+YC D DR+ P
Sbjct: 385 EGRYWWKEKDMQELSVHQSHQLVWARAHHLVYDYCVDTDRFPVQPP 248
>gb|CB876191.1|CB876191 HX10I22w HX Hordeum vulgare subsp. vulgare cDNA clone HX10I22
3-PRIME, mRNA sequence
Length = 593
Score = 90.0 bits (190), Expect(2) = 4e-025
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -2 / -2
Query: 680 QPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEA 534
QPM +YSS+WNADDWATRGG KTDWS+APFVA++R V+GC +A A
Sbjct: 586 QPMAVYSSIWNADDWATRGGLVKTDWSHAPFVATFRDVRVEGCAWAANA 440
Score = 44.6 bits (91), Expect(2) = 4e-025
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2 / -2
Query: 518 QGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
+G WW + + ++L Q +L R + +Y+YC D DR+ P
Sbjct: 385 EGRYWWKEKDMQELSVHQSHQLVWARAHHLVYDYCVDTDRFPVQPP 248
>gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016C04f, mRNA sequence
Length = 831
Score = 105 bits (223), Expect(2) = 8e-025
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = -2 / +1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASA 540
G+ +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C +A
Sbjct: 547 GIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTA 708
Score = 28.6 bits (56), Expect(2) = 8e-025
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR FKN
Sbjct: 490 IIFMVDDMPIRDFKN 534
>gb|BU971930.1|BU971930 HB20B14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20B14
5-PRIME, mRNA sequence
Length = 387
Score = 104 bits (222), Expect(2) = 1e-024
Identities = 39/57 (68%), Positives = 45/57 (78%)
Frame = -2 / +3
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
G+ P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C +A R
Sbjct: 123 GIAXPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTAGGR 293
Score = 28.6 bits (56), Expect(2) = 1e-024
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR FKN
Sbjct: 66 IIFMVDDMPIRDFKN 110
>gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017J11f, mRNA sequence
Length = 876
Score = 103 bits (220), Expect(2) = 2e-024
Identities = 37/50 (74%), Positives = 43/50 (86%)
Frame = -2 / +1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
G+ +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C
Sbjct: 550 GIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 699
Score = 28.6 bits (56), Expect(2) = 2e-024
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR FKN
Sbjct: 493 IIFMVDDMPIRDFKN 537
>gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06L16r 3', mRNA sequence
Length = 700
Score = 104 bits (222), Expect(2) = 3e-024
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = -2 / -1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
G+ +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C + R
Sbjct: 220 GIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTVGGR 50
Score = 27.2 bits (53), Expect(2) = 3e-024
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / -1
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR F+N
Sbjct: 277 IIFLVDDMPIRDFRN 233
>gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. vulgare cDNA clone HV11B18
3-PRIME, mRNA sequence
Length = 540
Score = 111 bits (237), Expect = 5e-024
Identities = 45/100 (45%), Positives = 63/100 (63%)
Frame = -2 / -3
Query: 761 IAFFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVA 582
I F+VD PIR +N A GV Y SQ M++Y+S+W+A++WAT+GGR +TDWS APFVA
Sbjct: 529 ILFYVDGTPIREHRNREAATGVPYLRSQAMRVYASVWDAEEWATQGGRVRTDWSRAPFVA 350
Query: 581 SYRGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQY 462
SY+G GC + A + GA + + + LD Q+
Sbjct: 349 SYKGLAASGCASQDAAACANSNGAWMYQELDATALDRLQW 230
>gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. vulgare cDNA clone HP07O06
5-PRIME, mRNA sequence
Length = 533
Score = 111 bits (237), Expect = 5e-024
Identities = 45/100 (45%), Positives = 63/100 (63%)
Frame = -2 / +2
Query: 761 IAFFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVA 582
I F+VD PIR +N A GV Y SQ M++Y+S+W+A++WAT+GGR +TDWS APFVA
Sbjct: 98 ILFYVDGTPIREHRNREAATGVPYLRSQAMRVYASVWDAEEWATQGGRVRTDWSRAPFVA 277
Query: 581 SYRGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQY 462
SY+G GC + A + GA + + + LD Q+
Sbjct: 278 SYKGLAASGCASQDAAACANSNGAWMYQELDATALDRLQW 397
>gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004C03f, mRNA sequence
Length = 556
Score = 103 bits (220), Expect(2) = 5e-024
Identities = 37/50 (74%), Positives = 43/50 (86%)
Frame = -2 / +1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGC 552
G+ +P +QPM+LYSSLWNADDWAT+GGR KTDWS+APF ASYRGF D C
Sbjct: 277 GIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 426
Score = 27.2 bits (53), Expect(2) = 5e-024
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR F+N
Sbjct: 220 IIFLVDDMPIRDFRN 264
>gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e10 5', mRNA sequence
Length = 652
Score = 77.1 bits (162), Expect(3) = 9e-024
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = -2 / +2
Query: 692 YPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCATQG 513
YP SQPM ++++LW+ WATR G K DW+ APFV +YRG+ +GC ++ + C
Sbjct: 83 YPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACPAGS 262
Query: 512 ARW 504
W
Sbjct: 263 DAW 271
Score = 36.8 bits (74), Expect(3) = 9e-024
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2 / +2
Query: 482 DLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECAR 366
+LDA +A +Y Y+YCTD R+ P EC+R
Sbjct: 281 ELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 397
Score = 33.6 bits (67), Expect(3) = 9e-024
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2 / +2
Query: 782 SSGTSNMIAFFVDDVPIRVFK 720
SSGT I F VDDVP+R FK
Sbjct: 2 SSGTPXNIIFQVDDVPVRTFK 64
>gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_G13 5', mRNA sequence
Length = 525
Score = 107 bits (228), Expect = 8e-023
Identities = 40/59 (67%), Positives = 47/59 (79%)
Frame = -2 / +3
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFC 525
GV +P SQPM+LY+SLWNADDWAT+GGR KTDWS APFVAS+R F+ D C S A+ C
Sbjct: 333 GVSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRC 509
>gb|BG309189.1|BG309189 HVSMEc0004M02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0004M02f, mRNA sequence
Length = 862
Score = 106 bits (227), Expect = 1e-022
Identities = 41/70 (58%), Positives = 51/70 (72%)
Frame = -2 / +3
Query: 761 IAFFVDDVPIRVFKNTSADLGVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVA 582
I F+VD PIR +N A GV Y SQ M++Y+S+WNA+DWAT+GGR +TDW APFVA
Sbjct: 201 ILFYVDGTPIREHRNREAATGVPYLRSQAMRVYASVWNAEDWATQGGRLRTDWVRAPFVA 380
Query: 581 SYRGFHVDGC 552
SY+G V GC
Sbjct: 381 SYKGLAVSGC 410
>gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015H17f, mRNA sequence
Length = 768
Score = 98.7 bits (209), Expect(2) = 2e-022
Identities = 35/57 (61%), Positives = 45/57 (78%)
Frame = -2 / +1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
G+ +P +QPM+LYSSLWNA+DWAT+GGR KTDWS+APF +SYR F D C + +R
Sbjct: 475 GIAFPKNQPMRLYSSLWNANDWATQGGRVKTDWSHAPFTSSYRRFEADTCVGTESSR 645
Score = 27.2 bits (53), Expect(2) = 2e-022
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR F+N
Sbjct: 418 IIFLVDDMPIRDFRN 462
>gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010E08f, mRNA sequence
Length = 788
Score = 95.9 bits (203), Expect(2) = 4e-022
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = -2 / +1
Query: 701 GVRYPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEAR 531
G+ +P +QPM+LYS+LWNADDWAT+GGR KTDWS+APF A RGF + C +A R
Sbjct: 538 GIAFPKNQPMRLYSNLWNADDWATQGGRVKTDWSHAPFSAFNRGFKANACVGTAGGR 708
Score = 28.6 bits (56), Expect(2) = 4e-022
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 761 IAFFVDDVPIRVFKN 717
I F VDD+PIR FKN
Sbjct: 481 IIFMVDDMPIRDFKN 525
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(PM5)
Length = 1188
Score = 77.1 bits (162), Expect(3) = 9e-022
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = -2 / +2
Query: 692 YPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCATQG 513
YP SQPM ++++LW+ WATR G K DW+ APFV +YRG+ +GC ++ + C
Sbjct: 593 YPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACPAGS 772
Query: 512 ARW 504
W
Sbjct: 773 DAW 781
Score = 36.8 bits (74), Expect(3) = 9e-022
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2 / +2
Query: 482 DLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECAR 366
+LDA +A +Y Y+YCTD R+ P EC+R
Sbjct: 791 ELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 907
Score = 26.7 bits (52), Expect(3) = 9e-022
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2 / +2
Query: 761 IAFFVDDVPIRVFK 720
I F VDDVP+R FK
Sbjct: 533 IIFQVDDVPVRTFK 574
>gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 3', mRNA sequence
Length = 706
Score = 77.1 bits (162), Expect(3) = 1e-021
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = -2 / -3
Query: 692 YPFSQPMKLYSSLWNADDWATRGGREKTDWSNAPFVASYRGFHVDGCEASAEARFCATQG 513
YP SQPM ++++LW+ WATR G K DW+ APFV +YRG+ +GC ++ + C
Sbjct: 593 YPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACPAGS 414
Query: 512 ARW 504
W
Sbjct: 413 DAW 405
Score = 36.8 bits (74), Expect(3) = 1e-021
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2 / -3
Query: 482 DLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVPPECAR 366
+LDA +A +Y Y+YCTD R+ P EC+R
Sbjct: 395 ELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 279
Score = 26.7 bits (52), Expect(3) = 1e-021
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2 / -3
Query: 761 IAFFVDDVPIRVFK 720
I F VDDVP+R FK
Sbjct: 653 IIFQVDDVPVRTFK 612
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 301,541,619
Number of Sequences: 312970
Number of extensions: 4673296
Number of successful extensions: 59649
Number of sequences better than 1.0e-020: 87
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 8799681451
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)