TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2590996.2.1
(1086 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA li... 421 e-117
gb|BM816260.1|BM816260 HC113E04_SK.ab1 HC Hordeum vulgare s... 330 e-106
gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA li... 361 3e-099
gb|BU994619.1|BU994619 HM07K10r HM Hordeum vulgare subsp. v... 204 1e-082
gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare s... 179 5e-081
gb|BM816261.1|BM816261 HC113F04_SK.ab1 HC Hordeum vulgare s... 301 6e-081
gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. v... 236 2e-080
gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, wat... 206 1e-078
gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedl... 232 1e-071
gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedl... 154 4e-069
gb|AL505675.1|AL505675 AL505675 Hordeum vulgare Barke roots... 260 1e-068
gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedl... 133 6e-066
gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedl... 127 3e-062
gb|BJ467287.1|BJ467287 BJ467287 K. Sato unpublished cDNA li... 226 1e-058
gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. v... 181 8e-045
gb|BF257303.2|BF257303 HVSMEf0012H19f Hordeum vulgare seedl... 174 9e-043
gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedl... 172 3e-042
gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. v... 167 5e-042
gb|BQ768134.1|BQ768134 EBro08_SQ010_E19_R root, 3 week, dro... 115 2e-041
gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. v... 169 2e-041
gb|CA016523.1|CA016523 HV08I24u HV Hordeum vulgare subsp. v... 167 8e-041
gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedl... 163 1e-039
gb|BM442817.2|BM442817 EBro02_SQ001_G03_R root, 3 week, hyd... 162 3e-039
gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, dro... 155 6e-037
emb|X15694.1|HVBRNZ1H Barley bronze 1 homologue for UDPgluc... 117 2e-034
gb|BE214720.2|BE214720 HV_CEb0004F12f Hordeum vulgare seedl... 145 4e-034
gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA li... 101 4e-034
gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA li... 100 8e-034
gb|BU999969.1|BU999969 HS16J06u HS Hordeum vulgare subsp. v... 137 7e-033
gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. v... 137 1e-031
gb|CA019620.1|CA019620 HV12J05r HV Hordeum vulgare subsp. v... 116 3e-031
gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. v... 135 3e-031
gb|CA015702.1|CA015702 HV12J05u HV Hordeum vulgare subsp. v... 133 1e-030
gb|BF620291.2|BF620291 HVSMEc0019F18f Hordeum vulgare seedl... 127 8e-029
gb|AL499707.1|AL499707 AL499707 Hordeum vulgare Barke etiol... 126 2e-028
gb|AJ462135.1|AJ462135 AJ462135 S00002 Hordeum vulgare subs... 126 2e-028
gb|BU998386.1|BU998386 HI10O06r HI Hordeum vulgare subsp. v... 81 1e-027
gb|BQ466592.1|BQ466592 HT02P16r HT Hordeum vulgare subsp. v... 78 4e-027
gb|BF623637.2|BF623637 HVSMEa0003E04f Hordeum vulgare seedl... 84 7e-026
gb|BM443110.2|BM443110 EBro02_SQ002_J16_R root, 3 week, hyd... 77 1e-023
gb|CA009114.1|CA009114 HU13D11r HU Hordeum vulgare subsp. v... 88 3e-023
gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedl... 77 5e-023
gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedl... 89 9e-023
gb|BQ660136.1|BQ660136 HI01C06w HI Hordeum vulgare subsp. v... 107 1e-022
gb|BG300446.1|BG300446 HVSMEb0017B13f Hordeum vulgare seedl... 85 4e-022
emb|AJ234486.1|HVU234486 Hordeum vulgare genomic DNA fragme... 105 6e-022
gb|CA019923.1|CA019923 HV13L17r HV Hordeum vulgare subsp. v... 67 2e-021
gb|AV934990.1|AV934990 AV934990 K. Sato unpublished cDNA li... 94 2e-021
gb|AV932146.1|AV932146 AV932146 K. Sato unpublished cDNA li... 94 2e-021
gb|BJ475648.1|BJ475648 BJ475648 K. Sato unpublished cDNA li... 94 2e-021
gb|BJ470840.1|BJ470840 BJ470840 K. Sato unpublished cDNA li... 94 2e-021
gb|BG417500.2|BG417500 HVSMEk0017N08f Hordeum vulgare testa... 102 4e-021
gb|CA000677.1|CA000677 HS07F12u HS Hordeum vulgare subsp. v... 87 5e-021
emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for p... 76 7e-021
>gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags5b03, mRNA sequence
Length = 671
Score = 421 bits (914), Expect = e-117
Identities = 168/206 (81%), Positives = 183/206 (88%)
Frame = -2 / +1
Query: 887 SPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFL 708
SP+A IGSNLWKEQ+APLRWL+GR PRSVVYVNFGSI VMS E ++EFAWGLANTGY FL
Sbjct: 52 SPLAGIGSNLWKEQDAPLRWLDGRPPRSVVYVNFGSIAVMSKEHMLEFAWGLANTGYAFL 231
Query: 707 WNVRPDLVKSGDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLES 528
WNVRPDLVK D A LPPEFS ATEGRSMLSTWCPQ VLE +AVGVFLTHSGWNS+LE
Sbjct: 232 WNVRPDLVKGDDEAALPPEFSTATEGRSMLSTWCPQEKVLEQEAVGVFLTHSGWNSSLEG 411
Query: 527 ICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLR 348
ICGGVPM+CWPFFA+QQTNCRYKCTEWGIG EIGDDV+R EVE+LIREAMEG+KG+EM R
Sbjct: 412 ICGGVPMVCWPFFADQQTNCRYKCTEWGIGMEIGDDVKRTEVEALIREAMEGDKGREMRR 591
Query: 347 RVTELRDSAVAAAGPDGRSMRNVDRL 270
RV EL +SAVA+A P GRSMRNV RL
Sbjct: 592 RVLELWESAVASARPGGRSMRNVXRL 669
Score = 335 bits (726), Expect(3) = 4e-098
Identities = 145/182 (79%), Positives = 151/182 (82%)
Frame = +1 / -1
Query: 343 TRRSISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPP 522
TRR IS P SPSMASRM STS TSSPIS PMPHSVHL RQLVC SAKKGQH++GTPP
Sbjct: 596 TRRLISRPLSPSMASRMRASTSVLFTSSPISIPMPHSVHL*RQLVC*SAKKGQHTIGTPP 417
Query: 523 QILSSVEFHPECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESPLLTRSGRT 702
+ SS EFHPECVR TPTASCSST +CGH VDSMLRPSVA ENSGGS A S LTRSGRT
Sbjct: 416 HMPSSDEFHPECVRKTPTASCSSTFSCGHQVDSMLRPSVAVENSGGSAASSSPLTRSGRT 237
Query: 703 FHRK**PVLASPHANSTSCSLDITVMLPKLTYTTERGARPLSHRSGASCSFHRLDPIAAT 882
FHRK *PVLASPHANS+ CSLDIT MLPK TYTTERG RP SHR GASCSFHRLDP+ A
Sbjct: 236 FHRKA*PVLASPHANSSICSLDITAMLPKFTYTTERGGRPSSHRRGASCSFHRLDPMPAR 57
Query: 883 GL 888
GL
Sbjct: 56 GL 51
Score = 201 bits (433), Expect(2) = 6e-053
Identities = 92/185 (49%), Positives = 108/185 (58%)
Frame = +3 / -3
Query: 270 EPVYVAHRPSVRPCSGHGAVPEFSXXXXXXXXXXXXXXXXYERLYLAPLYIVTDLFSDAP 449
EP +AH PS R C GHGA+PE YE L+L PL+IV DL DAP
Sbjct: 669 EPXNIAHGPSARTCRGHGALPELQHASSHLSPLVSLHGLPYEGLHLGPLHIVPDLHPDAP 490
Query: 450 XXXXXXXXXXXXXXXXPAQHGNAAANTLQRGVPPGVRQEHPHGIMLQHSCLRAPRRQHAS 629
P H NAAA LQR VPPGVR+E P+G++LQH LRAP RQHA
Sbjct: 489 LRALVTTVGLLIREEGPTHHRNAAAYALQRRVPPGVREEDPNGLLLQHLLLRAPGRQHAP 310
Query: 630 SLCRS*ELWRQPGGVATLDEVRAYVP*EVVAGVGQPPRELDQLLVGHHRDAPEVDIHNGA 809
L R E + G + LDEVR +VP E VAGVGQ PREL +L+GHHRDAP++ IH+GA
Sbjct: 309 PLRRRGEFRWKCGLIVALDEVRPHVPQEGVAGVGQSPRELQHMLLGHHRDAPKIYIHHGA 130
Query: 810 RRTAV 824
AV
Sbjct: 129 WWPAV 115
Score = 181 bits (389), Expect(2) = 7e-051
Identities = 85/152 (55%), Positives = 94/152 (61%)
Frame = -3 / +2
Query: 724 PATTSYGTYARTSSRVATPPGCRQSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGG 545
PAT S GT TSSR P ++S R+R ACC GARR+ CWS P G S RTPGG
Sbjct: 215 PATPSCGTCGLTSSRATMRPHFHRNSPRRRRGGACCRPGARRRRCWSRRPLGSSSRTPGG 394
Query: 544 TPRWRVFAAAFPCCAGPSSPSSRPTADTSAPSGASEKRSVTMYSGAR*SRSYGRPWRGRK 365
T RWR +AAAF C GPSS SRPT TSA SGAS RS TM G R SYGRPWR +
Sbjct: 395 TRRWRAYAAAFRWCVGPSSRISRPTVVTSARSGASGWRSGTM*RGPRWRPSYGRPWRETR 574
Query: 364 GKRCSGA*LNSGTAPWPLQGLTDGLCAT*TGS 269
G+R A +SG APWPL L +G CA GS
Sbjct: 575 GER*DDACWSSGRAPWPLHVLAEGPCAMXIGS 670
Score = 168 bits (361), Expect = 6e-041
Identities = 82/154 (53%), Positives = 96/154 (62%)
Frame = -1 / +3
Query: 879 RCYWVQPVEXXXXXAPVAQRPCAALRCVCQLREHHGDVQRAAGRVRVGAGQHRLLLPMER 700
R + VQP+E PVA+RP LR VC+ EH GDVQ A VRVG GQHRL LP+ER
Sbjct: 60 RRHRVQPMEGAGRAPPVARRPATTLRGVCKFWEHRGDVQGAYAGVRVGTGQHRLRLPVER 239
Query: 699 TPGPRQEWRLRRAAARVLSCDRGTKHAVYVVPXXXXXXXXXXXGVPDALRVELHAGEYLR 520
PRQ R R + +L D G +HAV +VP G+P ALRVEL AG ++R
Sbjct: 240 AA*PRQGRR*GRTSTGILHGDGGAEHAVDLVPAGEGAGAGGRWGLPHALRVELVAGGHMR 419
Query: 519 RRSHAVLALLRRAADQLPIQVHRVGHRKRDR*RC 418
RRS VLALLR +ADQL +QVH VGHR DR RC
Sbjct: 420 RRSDGVLALLRGSADQLSLQVHGVGHRDGDRGRC 521
Score = 40.5 bits (82), Expect(2) = 7e-051
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -2 / +2
Query: 938 YTVGPLQLTVRNNVQANSPVAAIGSNLWKEQEAP 837
YTVGPL LTVRNNV +P A G + + P
Sbjct: 2 YTVGPLHLTVRNNVPERAPSPASGPTYGRSRTRP 103
Score = 35.0 bits (70), Expect(3) = 4e-098
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1 / -3
Query: 868 PIAATGLFACTLFRTVSWSGPTV* 939
P A G + TL RTV WSGPTV*
Sbjct: 72 PDAGEGALSGTLLRTVRWSGPTV* 1
Score = 28.1 bits (55), Expect(3) = 4e-098
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / -2
Query: 284 CA*TVRQALQRPRRCP 331
CA T RQ +QRPRR P
Sbjct: 655 CAWTFRQDVQRPRRSP 608
Score = 27.2 bits (53), Expect(2) = 6e-053
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2 / -1
Query: 890 SPARCSAPSAGAGPRC 937
SP RC AP GA P C
Sbjct: 50 SPGRCCAP*DGAAPLC 3
>gb|BM816260.1|BM816260 HC113E04_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113E04_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 842
Score = 330 bits (716), Expect(3) = e-106
Identities = 127/161 (78%), Positives = 143/161 (88%)
Frame = -2 / +2
Query: 845 EAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVRPDLVKSGDSA 666
+ PLRWL+ + P SVVYVNFGSITVMSNE L+EFAWGLAN+GY FLWNVRPDLVK D+A
Sbjct: 62 DGPLRWLDNQPPGSVVYVNFGSITVMSNEHLLEFAWGLANSGYTFLWNVRPDLVKGHDNA 241
Query: 665 GLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFA 486
LPPEFSAATE RSMLSTWCPQ VLEH+A+GVFLTHSGWNS+LE ICGGVPM+CWPFF
Sbjct: 242 VLPPEFSAATEDRSMLSTWCPQEKVLEHEAIGVFLTHSGWNSSLEGICGGVPMVCWPFFT 421
Query: 485 EQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKG 363
EQQTNCRYKCTEWGIG EIG++V R EVE+++REAMEG +G
Sbjct: 422 EQQTNCRYKCTEWGIGMEIGEEVTRTEVEAILREAMEGGEG 544
Score = 288 bits (624), Expect(2) = 1e-081
Identities = 124/161 (77%), Positives = 133/161 (82%)
Frame = +1 / -3
Query: 364 PFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILSSVE 543
P PSMASR STS TSSPIS PMPHSVHLYRQLVCCS KKGQH++GTPPQ+ S+ E
Sbjct: 543 PSPPSMASRRMASTSVLVTSSPISIPMPHSVHLYRQLVCCSVKKGQHTIGTPPQMPSNDE 364
Query: 544 FHPECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESPLLTRSGRTFHRK**P 723
FHPECVRNTP ASCSST +CGHHV+SMLR SVAAENSGGS A S LTRSGRTFH+K *P
Sbjct: 363 FHPECVRNTPMASCSSTFSCGHHVESMLRSSVAAENSGGSTALSCPLTRSGRTFHKKV*P 184
Query: 724 VLASPHANSTSCSLDITVMLPKLTYTTERGARPLSHRSGAS 846
+LASPHANS+ CSLDITVMLPKLTYTTE G SHR G S
Sbjct: 183 LLASPHANSSKCSLDITVMLPKLTYTTEPGG*LSSHRRGPS 61
Score = 166 bits (358), Expect = 1e-040
Identities = 73/142 (51%), Positives = 90/142 (63%)
Frame = +3 / -2
Query: 399 LYLAPLYIVTDLFSDAPXXXXXXXXXXXXXXXXPAQHGNAAANTLQRGVPPGVRQEHPHG 578
L P ++ +L DAP PA H + AA+ QR VPP +R+EHP+G
Sbjct: 508 LDFGPRHLFPNLHPDAPLRALVPAVGLLLREEGPAHHRHTAADAFQR*VPPRMREEHPYG 329
Query: 579 IMLQHSCLRAPRRQHASSLCRS*ELWRQPGGVATLDEVRAYVP*EVVAGVGQPPRELDQL 758
+LQH LRAP R+HAS CR EL + G V +LD+VR YVP E VA VGQPPRE Q+
Sbjct: 328 FVLQHLLLRAPCREHASVFCRRRELRWKYGVVVSLDKVRPYVPQEGVAAVGQPPREFQQM 149
Query: 759 LVGHHRDAPEVDIHNGARRTAV 824
LVGHHRDAPE+D+H+GARR V
Sbjct: 148 LVGHHRDAPEIDVHHGARRLIV 83
Score = 147 bits (316), Expect(2) = 4e-042
Identities = 74/135 (54%), Positives = 84/135 (62%)
Frame = -1 / +1
Query: 834 PVAQRPCAALRCVCQLREHHGDVQRAAGRVRVGAGQHRLLLPMERTPGPRQEWRLRRAAA 655
PVA++ A LR V Q REHHGDVQRA +RVGAGQ RL L +ERT P Q R RR +
Sbjct: 73 PVARQSAAGLRGVRQFREHHGDVQRAFAGIRVGAGQQRLHLLVERTA*PCQGTRQRRTST 252
Query: 654 RVLSCDRGTKHAVYVVPXXXXXXXXXXXGVPDALRVELHAGEYLRRRSHAVLALLRRAAD 475
VL DR KHA+ +VP GVP A VEL G +LRR + VLALL AAD
Sbjct: 253 GVLGGDRRPKHALDMVPAGEGAGARSHRGVPHAFWVELIVGRHLRRCADGVLALLHGAAD 432
Query: 474 QLPIQVHRVGHRKRD 430
QLP+QVH VGHR D
Sbjct: 433 QLPVQVHGVGHRDGD 477
Score = 140 bits (300), Expect(2) = 8e-034
Identities = 67/121 (55%), Positives = 74/121 (61%)
Frame = -3 / +3
Query: 721 ATTSYGTYARTSSRVATPPGCRQSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGGT 542
AT S GTY T SR T P +SS+ RQ+ EAC GARR+ CWS P GCS R GGT
Sbjct: 186 ATPSCGTYGLTLSRDTTTPYFHRSSRRRQKTEACSRHGARRRRCWSTKP*GCSSRILGGT 365
Query: 541 PRWRVFAAAFPCCAGPSSPSSRPTADTSAPSGASEKRSVTMYSGAR*SRSYGRPWRGRKG 362
RW+ AA CAGPSS SSRPTA TSA SGAS R G + YGRPWRG KG
Sbjct: 366 HRWKASAAVCRWCAGPSSRSSRPTAGTSARSGASGWRLGKR*RGPKSRPFYGRPWRGGKG 545
Query: 361 K 359
+
Sbjct: 546 Q 548
Score = 71.2 bits (149), Expect(3) = e-106
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = -2 / +3
Query: 374 GEKGQEMLRRVTELRDSAVAAAGPDGRSMRNVDRLIEEVLLA*IEHW*AS*QSCVFA 204
G KGQEM RRV +L+++AVA+A DGRSMRNVDRLI+EVLLA* + *+S + A
Sbjct: 534 GGKGQEMRRRVLKLQENAVASARHDGRSMRNVDRLIQEVLLA*YKQTGKQ*ESDICA 704
Score = 44.6 bits (91), Expect(2) = 4e-042
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = -3 / +1
Query: 373 GRKGKRCSGA*LNSGTAPWPLQGLTDGLCAT*TGSSKRC 257
G + KRC GA +S P P +G+T+G C GSSK+C
Sbjct: 535 GGRAKRCDGAC*SSRRTPLPRRGMTEGPCVMLIGSSKKC 651
Score = 35.4 bits (71), Expect(2) = 1e-081
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3 / -1
Query: 255 EHLFDEPVYVAHRPSVRPCSGHGAVPE 335
+H DEP+ + H PSV P G+G + E
Sbjct: 653 QHFLDEPINITHGPSVMPRRGNGVLLE 573
Score = 24.0 bits (46), Expect(2) = 8e-034
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / +3
Query: 823 TAVRRAPLCMSTSGA 779
T RRAP C S SGA
Sbjct: 84 TISRRAPWCTSISGA 128
Score = 24.0 bits (46), Expect(3) = e-106
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -2 / +3
Query: 872 IGSNLWKEQ 846
IGSNLWKE+
Sbjct: 36 IGSNLWKER 62
>gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26i01 5', mRNA sequence
Length = 518
Score = 361 bits (783), Expect = 3e-099
Identities = 140/168 (83%), Positives = 151/168 (89%)
Frame = -2 / +3
Query: 887 SPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFL 708
SP+A IGSNLWKEQ+APLRWL+GR PRSVVYVNFGSI VMS E ++EFAWGLANTGY FL
Sbjct: 15 SPLAGIGSNLWKEQDAPLRWLDGRPPRSVVYVNFGSIAVMSKEHMLEFAWGLANTGYAFL 194
Query: 707 WNVRPDLVKSGDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLES 528
WNVRPDLVK D A LPPEFS ATEGRSMLSTWCPQ VLE +AVGVFLTHSGWNS+LE
Sbjct: 195 WNVRPDLVKGDDEAALPPEFSTATEGRSMLSTWCPQEKVLEQEAVGVFLTHSGWNSSLEG 374
Query: 527 ICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIRE 384
ICGGVPM+CWPFFA+QQTNCRYKCTEWGIG EIGDDV+R EVE+LIRE
Sbjct: 375 ICGGVPMVCWPFFADQQTNCRYKCTEWGIGMEIGDDVKRTEVEALIRE 518
Score = 313 bits (677), Expect = 1e-084
Identities = 134/168 (79%), Positives = 140/168 (83%)
Frame = +1 / -2
Query: 385 SRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILSSVEFHPECVR 564
SRM STS TSSPIS PMPHSVHL RQLVC SAKKGQH++GTPP + SS EFHPECVR
Sbjct: 517 SRMRASTSVLFTSSPISIPMPHSVHL*RQLVC*SAKKGQHTIGTPPHMPSSDEFHPECVR 338
Query: 565 NTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESPLLTRSGRTFHRK**PVLASPHA 744
TPTASCSST +CGH VDSMLRPSVA ENSGGS A S LTRSGRTFHRK *PVLASPHA
Sbjct: 337 KTPTASCSSTFSCGHQVDSMLRPSVAVENSGGSAASSSPLTRSGRTFHRKA*PVLASPHA 158
Query: 745 NSTSCSLDITVMLPKLTYTTERGARPLSHRSGASCSFHRLDPIAATGL 888
NS+ CSLDIT MLPK TYTTERG RP SHR GASCSFHRLDP+ A GL
Sbjct: 157 NSSICSLDITAMLPKFTYTTERGGRPSSHRRGASCSFHRLDPMPARGL 14
Score = 169 bits (364), Expect = 2e-041
Identities = 78/145 (53%), Positives = 92/145 (63%)
Frame = +3 / -1
Query: 390 YERLYLAPLYIVTDLFSDAPXXXXXXXXXXXXXXXXPAQHGNAAANTLQRGVPPGVRQEH 569
YE L+L PL+IV DL DAP P H NAAA LQR VPPGVR+E
Sbjct: 512 YEGLHLGPLHIVPDLHPDAPLRALVTTVGLLIREEGPTHHRNAAAYALQRRVPPGVREED 333
Query: 570 PHGIMLQHSCLRAPRRQHASSLCRS*ELWRQPGGVATLDEVRAYVP*EVVAGVGQPPREL 749
P+G++LQH LRAP RQHA L R E + G + LDEVR +VP E VAGVGQ PREL
Sbjct: 332 PNGLLLQHLLLRAPGRQHAPPLRRRGEFRWKCGLIVALDEVRPHVPQEGVAGVGQSPREL 153
Query: 750 DQLLVGHHRDAPEVDIHNGARRTAV 824
+L+GHHRDAP++ IH+GA AV
Sbjct: 152 QHMLLGHHRDAPKIYIHHGAWWPAV 78
Score = 168 bits (361), Expect = 6e-041
Identities = 82/154 (53%), Positives = 96/154 (62%)
Frame = -1 / +2
Query: 879 RCYWVQPVEXXXXXAPVAQRPCAALRCVCQLREHHGDVQRAAGRVRVGAGQHRLLLPMER 700
R + VQP+E PVA+RP LR VC+ EH GDVQ A VRVG GQHRL LP+ER
Sbjct: 23 RRHRVQPMEGAGRAPPVARRPATTLRGVCKFWEHRGDVQGAYAGVRVGTGQHRLRLPVER 202
Query: 699 TPGPRQEWRLRRAAARVLSCDRGTKHAVYVVPXXXXXXXXXXXGVPDALRVELHAGEYLR 520
PRQ R R + +L D G +HAV +VP G+P ALRVEL AG ++R
Sbjct: 203 AA*PRQGRR*GRTSTGILHGDGGAEHAVDLVPAGEGAGAGGRWGLPHALRVELVAGGHMR 382
Query: 519 RRSHAVLALLRRAADQLPIQVHRVGHRKRDR*RC 418
RRS VLALLR +ADQL +QVH VGHR DR RC
Sbjct: 383 RRSDGVLALLRGSADQLSLQVHGVGHRDGDRGRC 484
Score = 136 bits (291), Expect = 3e-031
Identities = 65/113 (57%), Positives = 70/113 (61%)
Frame = -3 / +1
Query: 724 PATTSYGTYARTSSRVATPPGCRQSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGG 545
PAT S GT TSSR P ++S R+R ACC GARR+ CWS P G S RTPGG
Sbjct: 178 PATPSCGTCGLTSSRATMRPHFHRNSPRRRRGGACCRPGARRRRCWSRRPLGSSSRTPGG 357
Query: 544 TPRWRVFAAAFPCCAGPSSPSSRPTADTSAPSGASEKRSVTMYSGAR*SRSYG 386
T RWR +AAAF C GPSS SRPT TSA SGAS RS TM G R SYG
Sbjct: 358 TRRWRAYAAAFRWCVGPSSRISRPTVVTSARSGASGWRSGTM*RGPRWRPSYG 516
>gb|BU994619.1|BU994619 HM07K10r HM Hordeum vulgare subsp. vulgare cDNA clone HM07K10
5-PRIME, mRNA sequence
Length = 603
Score = 204 bits (439), Expect(2) = 1e-082
Identities = 77/108 (71%), Positives = 89/108 (82%)
Frame = -2 / +3
Query: 677 GDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCW 498
GD A LPPEF + EGR +L++WCPQ AVL H+AVGVFLTHSGWNST++S+CGGVP LCW
Sbjct: 276 GDVAVLPPEFLESIEGRGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCW 455
Query: 497 PFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEM 354
PFFAEQQTN RY C EWG+ EIG DV+R VE+ IREAM GEKG+EM
Sbjct: 456 PFFAEQQTNSRYSCVEWGVAMEIGQDVRRETVEAKIREAMSGEKGKEM 599
Score = 179 bits (385), Expect(2) = 8e-056
Identities = 76/109 (69%), Positives = 84/109 (77%)
Frame = +1 / -3
Query: 355 ISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILS 534
IS PFSP +ASR+ ST R TS PIS PHS LYR LVCCSAKKGQHS+GTPP LS
Sbjct: 598 ISFPFSPDIASRILASTVSRRTS*PISMATPHSTQLYRLLVCCSAKKGQHSVGTPPHRLS 419
Query: 535 SVEFHPECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESPL 681
+VEFHPECVRNTPTASC STA+CGH + S RPS+ + NSGGS A SPL
Sbjct: 418 TVEFHPECVRNTPTASCLSTASCGHQLASTPRPSMDSRNSGGSTATSPL 272
Score = 123 bits (264), Expect(2) = 1e-082
Identities = 50/79 (63%), Positives = 61/79 (77%)
Frame = -2 / +3
Query: 917 LTVRNNVQANSPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAW 738
LT R + PV +GSNLWKE + +L+G+ PRSVVYVN+GSITVMSNE+L+EFAW
Sbjct: 39 LTRRGDRAQGGPVDTLGSNLWKEDVSCFNFLDGKEPRSVVYVNYGSITVMSNEELLEFAW 218
Query: 737 GLANTGYYFLWNVRPDLVK 681
GLAN+G FLW +RPDLVK
Sbjct: 219 GLANSGQSFLWIIRPDLVK 275
Score = 111 bits (236), Expect = 1e-023
Identities = 57/113 (50%), Positives = 64/113 (56%)
Frame = -3 / +1
Query: 688 SSRVATPPGCRQSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGGTPRWRVFAAAFP 509
+S AT P CR+SS R AC GARR+ C CS*RT GGT RW AA
Sbjct: 265 TSSRATSPCCRRSSWSPSRGAACWRAGARRRQC*GTRQ*ACS*RTQGGTRRWTACAAGCR 444
Query: 508 CCAGPSSPSSRPTADTSAPSGASEKRSVTMYSGAR*SRSYGRPWRGRKGKRCS 350
CAGPSS SSRPTA T+A SGA RSV G R YGR R+G+RC+
Sbjct: 445 RCAGPSSRSSRPTAGTAAWSGAWPWRSVRTCGGRRWRPRYGRRCPARRGRRCA 603
Score = 77.1 bits (162), Expect(2) = 3e-022
Identities = 40/96 (41%), Positives = 50/96 (52%)
Frame = +3 / -2
Query: 390 YERLYLAPLYIVTDLFSDAPXXXXXXXXXXXXXXXXPAQHGNAAANTLQRGVPPGVRQEH 569
Y L+ P +++TDL AP PAQ + AA + R VPP VRQEH
Sbjct: 563 YLGLHRLPPHVLTDLHGHAPLHAAVPAVGLLLREEGPAQRRHPAAQAVHRRVPP*VRQEH 384
Query: 570 PHGIMLQHSCLRAPRRQHASSLCRS*ELWRQPGGVA 677
+ ++ QH LRAP RQHA+ L EL RQ G VA
Sbjct: 383 AYCLVPQHCLLRAPARQHAAPLDGLQELRRQHGDVA 276
Score = 58.8 bits (122), Expect(2) = 8e-056
Identities = 26/49 (53%), Positives = 33/49 (67%)
Frame = +3 / -2
Query: 657 RQPGGVATLDEVRAYVP*EVVAGVGQPPRELDQLLVGHHRDAPEVDIHN 803
R+ G LDEV P E +A VG PPR+L++LLV HHRDAP V +H+
Sbjct: 299 RRQHGDVALDEVWPDDPQEGLAAVG*PPRKLEELLVAHHRDAPVVHVHD 153
Score = 48.3 bits (99), Expect(2) = 3e-022
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +2 / -1
Query: 704 SIGSSSRCWPAPTRTRPAARWTSP*CSRS*HTQ 802
S G + RCW APT+TR A R +SP*CSRS T+
Sbjct: 252 STGRTGRCWLAPTQTRGAPRCSSP*CSRSSRTR 154
>gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105A11_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 872
Score = 179 bits (385), Expect(4) = 5e-081
Identities = 67/102 (65%), Positives = 80/102 (78%)
Frame = -2 / +3
Query: 677 GDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCW 498
GD+A LPPEF AT+GR +L++WC Q AV+ H+AVG FLTH GWNS +E + GVPMLCW
Sbjct: 411 GDAAVLPPEFIEATKGRCLLASWCEQEAVMRHEAVGAFLTHCGWNSMMEGLGAGVPMLCW 590
Query: 497 PFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEG 372
PFFAEQQTN RY C EWG+G E+GDDV+R VE+ IRE M G
Sbjct: 591 PFFAEQQTNSRYACVEWGVGMEVGDDVRRVVVEARIREVMGG 716
Score = 125 bits (268), Expect(3) = 5e-041
Identities = 55/102 (53%), Positives = 65/102 (63%)
Frame = +1 / -2
Query: 373 PSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILSSVEFHP 552
P + S + ST+ R TSSP S P PHS H R VCCSAKKGQ S+GTP S +EFHP
Sbjct: 715 PPITSLILASTTTRRTSSPTSIPTPHSTHA*RLFVCCSAKKGQQSIGTPAPSPSIMEFHP 536
Query: 553 ECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESP 678
+CV+ PTAS TA+C H + P VA+ NSGGS A SP
Sbjct: 535 QCVKKAPTAS*RMTASCSHQLARRHLPLVASMNSGGSTAASP 410
Score = 116 bits (249), Expect(4) = 5e-081
Identities = 46/69 (66%), Positives = 56/69 (81%)
Frame = -2 / +3
Query: 887 SPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFL 708
S +AA+ S+LW+E ++ L WL GR PRSVVYVN+GS+T MS ++LVEFAWGLAN GY FL
Sbjct: 204 SELAAMRSSLWREDQSCLEWLQGREPRSVVYVNYGSVTTMSKQELVEFAWGLANCGYDFL 383
Query: 707 WNVRPDLVK 681
W VR DLVK
Sbjct: 384 WIVRNDLVK 410
Score = 85.4 bits (180), Expect(2) = 2e-028
Identities = 49/104 (47%), Positives = 51/104 (49%)
Frame = -3 / +1
Query: 676 ATPPGCRQSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGGTPRWRVFAAAFPCCAG 497
A PP C SS R +A GA R+ W S*RT GGTP WR A A C AG
Sbjct: 412 AMPPCCLPSSSRPPRADASWQAGASRRRSCVTRRWAPS*RTAGGTP*WRGSAPACRCSAG 591
Query: 496 PSSPSSRPTADTSAPSGASEKRSVTMYSGAR*SRSYGRPWRGRK 365
PSSPSSR TA SGA RS M G R GR W G K
Sbjct: 592 PSSPSSRQTAAMRVWSGALGWRSAMMCVGWWSRRG*GR*WEGEK 723
Score = 61.1 bits (127), Expect(2) = 2e-028
Identities = 34/80 (42%), Positives = 43/80 (53%)
Frame = -1 / +2
Query: 927 PAPADGAEQRAGEQSCRCYWVQPVEXXXXXAPVAQRPCAALRCVCQLREHHGDVQRAAGR 748
P PA G +R + R +QP+E + VA AA+R V QLRE V+ AG
Sbjct: 164 PHPAAGLRRRWRRKRARGDALQPLERRSVMSRVAPGQGAAVRGVRQLRERDHHVEAGAGG 343
Query: 747 VRVGAGQHRLLLPMERTPGP 688
VRVG GQ RL LP++R P
Sbjct: 344 VRVGTGQLRLRLPLDREERP 403
Score = 57.0 bits (118), Expect(3) = 5e-041
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = +3 / -1
Query: 669 GVATLDEVRAYVP*EVVAGVGQPPRELDQLLVGHHRDAPEVDIHNGARRTAV 824
G L +V + P EVVA VGQ PREL QLL+ H AP VD+H+G R A+
Sbjct: 422 GGIALHQVVPHDPEEVVAAVGQSPRELHQLLLRHGGHAPVVDVHHGPRLPAL 267
Score = 40.0 bits (81), Expect(4) = 5e-081
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = -2 / +3
Query: 1040 ETEGMSQASAVVINTFDELDATLLAAMAKLLP 945
E E +A+A+VINT DEL+ T L AM +LP
Sbjct: 36 EVEQSDRATAIVINTIDELEQTALDAMRAILP 131
Score = 29.0 bits (57), Expect(3) = 5e-041
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / -1
Query: 960 HGSEQRRVELVEGVDD 1007
HG E+R +ELV GVDD
Sbjct: 116 HGVERRLLELVNGVDD 69
Score = 23.5 bits (45), Expect(4) = 5e-081
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2 / +3
Query: 968 AAMAKLLPPIYTVGPLQLTVRNNV 897
A A L P+YT+GPL + V
Sbjct: 111 AMRAILPVPVYTIGPLNFLTQQLV 182
>gb|BM816261.1|BM816261 HC113F04_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113F04_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 935
Score = 301 bits (651), Expect = 6e-081
Identities = 121/153 (79%), Positives = 137/153 (89%)
Frame = -2 / +3
Query: 704 NVRPDLVKSGDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESI 525
NVRPDLVK D+A LPPEFSAATE RSMLSTWCPQ VLEH+A+GVFLTHSGWNS+LE I
Sbjct: 30 NVRPDLVKGHDNAVLPPEFSAATEDRSMLSTWCPQEKVLEHEAIGVFLTHSGWNSSLEGI 209
Query: 524 CGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRR 345
CGGVPM+CWPFF EQQTNCRYKCTEWGIG EIG++V R EVE+++REAMEG KGQEM RR
Sbjct: 210 CGGVPMVCWPFFTEQQTNCRYKCTEWGIGMEIGEEVTRTEVEAILREAMEGGKGQEMRRR 389
Query: 344 VTELRDSAVAAAGPDGRSMRNVDRLIEEVLLA* 246
V +L+++AVA+A DGRSMRNVDRLI+EVLLA*
Sbjct: 390 VLKLQENAVASARHDGRSMRNVDRLIQEVLLA* 488
Score = 223 bits (482), Expect(2) = 4e-062
Identities = 95/121 (78%), Positives = 101/121 (83%)
Frame = +1 / -2
Query: 343 TRRSISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPP 522
TRR IS PF PSMASR STS TSSPIS PMPHSVHLYRQLVCCS KKGQH++GTPP
Sbjct: 391 TRRRISWPFPPSMASRRMASTSVLVTSSPISIPMPHSVHLYRQLVCCSVKKGQHTIGTPP 212
Query: 523 QILSSVEFHPECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESPLLTRSGRT 702
Q+ S+ EFHPECVRNTP ASCSST +CGHHV+SMLR SVAAENSGGS A S LTRSGRT
Sbjct: 211 QMPSNDEFHPECVRNTPMASCSSTFSCGHHVESMLRSSVAAENSGGSTALSCPLTRSGRT 32
Query: 703 F 705
F
Sbjct: 31 F 29
Score = 170 bits (365), Expect = 2e-041
Identities = 79/150 (52%), Positives = 91/150 (60%)
Frame = -3 / +1
Query: 706 GTYARTSSRVATPPGCRQSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGGTPRWRV 527
GTY T SR T P +SS+ RQ+ EAC GARR+ CWS P GCS R GGT RW+
Sbjct: 28 GTYGLTLSRDTTTPYFHRSSRRRQKTEACSRHGARRRRCWSTKP*GCSSRILGGTHRWKA 207
Query: 526 FAAAFPCCAGPSSPSSRPTADTSAPSGASEKRSVTMYSGAR*SRSYGRPWRGRKGKRCSG 347
AA CAGPSS SSRPTA TSA SGAS R G + YGRPWRG + KRC G
Sbjct: 208 SAAVCRWCAGPSSRSSRPTAGTSARSGASGWRLGKR*RGPKSRPFYGRPWRGGRAKRCDG 387
Query: 346 A*LNSGTAPWPLQGLTDGLCAT*TGSSKRC 257
A +S P P +G+T+G C GSSK+C
Sbjct: 388 AC*SSRRTPLPRRGMTEGPCVMLIGSSKKC 477
Score = 35.4 bits (71), Expect(2) = 4e-062
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3 / -1
Query: 255 EHLFDEPVYVAHRPSVRPCSGHGAVPE 335
+H DEP+ + H PSV P G+G + E
Sbjct: 479 QHFLDEPINITHGPSVMPRRGNGVLLE 399
>gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05K10
3-PRIME, mRNA sequence
Length = 622
Score = 236 bits (510), Expect(2) = 2e-080
Identities = 92/143 (64%), Positives = 111/143 (77%)
Frame = -2 / -2
Query: 677 GDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCW 498
GD A LPPEF + EGR +L++WCPQ AVL H+AVGVFLTHSGWNST++S+CGGVP LCW
Sbjct: 501 GDVAVLPPEFLESIEGRGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCW 322
Query: 497 PFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRRVTELRDSAV 318
PFFAEQQTN RY C EWG+ EIG DV+R VE+ IREAM GEKG+EM RR E R++ V
Sbjct: 321 PFFAEQQTNSRYSCVEWGVAMEIGQDVRRETVEAKIREAMSGEKGKEMRRRAEEWRETGV 142
Query: 317 AAAGPDGRSMRNVDRLIEEVLLA 249
A P GRS N++RL+ + LL+
Sbjct: 141 RATRPGGRSRANLERLVADSLLS 73
Score = 183 bits (394), Expect(2) = 6e-057
Identities = 78/112 (69%), Positives = 86/112 (76%)
Frame = +1 / +2
Query: 346 RRSISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQ 525
RR IS PFSP +ASR+ ST R TS PIS PHS LYR LVCCSAKKGQHS+GTPP
Sbjct: 170 RRRISFPFSPDIASRILASTVSRRTS*PISMATPHSTQLYRLLVCCSAKKGQHSVGTPPH 349
Query: 526 ILSSVEFHPECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESPL 681
LS+VEFHPECVRNTPTASC STA+CGH + S RPS+ + NSGGS A SPL
Sbjct: 350 RLSTVEFHPECVRNTPTASCLSTASCGHQLASTPRPSMDSRNSGGSTATSPL 505
Score = 111 bits (237), Expect = 7e-024
Identities = 58/120 (48%), Positives = 66/120 (55%)
Frame = -3 / -3
Query: 688 SSRVATPPGCRQSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGGTPRWRVFAAAFP 509
+S AT P CR+SS R AC GARR+ C CS*RT GGT RW AA
Sbjct: 512 TSSRATSPCCRRSSWSPSRGAACWRAGARRRQC*GTRQ*ACS*RTQGGTRRWTACAAGCR 333
Query: 508 CCAGPSSPSSRPTADTSAPSGASEKRSVTMYSGAR*SRSYGRPWRGRKGKRCSGA*LNSG 329
CAGPSS SSRPTA T+A SGA RSV G R YGR R+G+RC+ + G
Sbjct: 332 RCAGPSSRSSRPTAGTAAWSGAWPWRSVRTCGGRRWRPRYGRRCPARRGRRCAAGPRSGG 153
Score = 83.5 bits (176), Expect(2) = 2e-080
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = -2 / -2
Query: 800 VYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVRPDLVK 681
VYVN+GSITVMSNE+L+EFAWGLAN+G FLW +RPDLVK
Sbjct: 621 VYVNYGSITVMSNEELLEFAWGLANSGQSFLWIIRPDLVK 502
Score = 77.1 bits (162), Expect(2) = 4e-022
Identities = 40/96 (41%), Positives = 50/96 (52%)
Frame = +3 / +1
Query: 390 YERLYLAPLYIVTDLFSDAPXXXXXXXXXXXXXXXXPAQHGNAAANTLQRGVPPGVRQEH 569
Y L+ P +++TDL AP PAQ + AA + R VPP VRQEH
Sbjct: 214 YLGLHRLPPHVLTDLHGHAPLHAAVPAVGLLLREEGPAQRRHPAAQAVHRRVPP*VRQEH 393
Query: 570 PHGIMLQHSCLRAPRRQHASSLCRS*ELWRQPGGVA 677
+ ++ QH LRAP RQHA+ L EL RQ G VA
Sbjct: 394 AYCLVPQHCLLRAPARQHAAPLDGLQELRRQHGDVA 501
Score = 58.3 bits (121), Expect(2) = 6e-057
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +3 / +1
Query: 657 RQPGGVATLDEVRAYVP*EVVAGVGQPPRELDQLLVGHHRDAPEVDIH 800
R+ G LDEV P E +A VG PPR+L++LLV HHRDAP V +H
Sbjct: 478 RRQHGDVALDEVWPDDPQEGLAAVG*PPRKLEELLVAHHRDAPVVHVH 621
Score = 47.8 bits (98), Expect(2) = 4e-022
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = +2 / +3
Query: 704 SIGSSSRCWPAPTRTRPAARWTSP*CSRS*HT 799
S G + RCW APT+TR A R +SP*CSRS T
Sbjct: 525 STGRTGRCWLAPTQTRGAPRCSSP*CSRSSRT 620
>gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_G23 5', mRNA sequence
Length = 594
Score = 206 bits (444), Expect(3) = 1e-078
Identities = 78/117 (66%), Positives = 93/117 (79%)
Frame = -2 / +2
Query: 668 AGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFF 489
A LPP F AT GR ++++WC Q AVL HDAV VFLTHSGWNST+E++CGGVPMLCWPFF
Sbjct: 185 AALPPGFLEATRGRGLVASWCDQEAVLRHDAVCVFLTHSGWNSTVEALCGGVPMLCWPFF 364
Query: 488 AEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRRVTELRDSAV 318
AEQQTNCRYKC EWG+ EIGDDV+R VE I+EA+ G+KG+EM R E ++AV
Sbjct: 365 AEQQTNCRYKCVEWGVAMEIGDDVRREAVEGRIKEAVAGDKGREMRERADEWTEAAV 535
Score = 159 bits (341), Expect(2) = 2e-053
Identities = 69/110 (62%), Positives = 79/110 (71%)
Frame = +1 / -1
Query: 355 ISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILS 534
IS P SP+ AS + ST+ R TSSPIS PHS HLYRQLVCCSAKKGQHS+GTPPQ S
Sbjct: 498 ISLPLSPATASLILPSTASRRTSSPISIATPHSTHLYRQLVCCSAKKGQHSIGTPPQRAS 319
Query: 535 SVEFHPECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESPLL 684
+VEFHP CVRNT TASC STA+ H + + P VA+ N GGS A + L
Sbjct: 318 TVEFHPLCVRNTHTASCRSTASWSHQLATSPLPLVASRNPGGSAAPASSL 169
Score = 103 bits (220), Expect(3) = 1e-078
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = -2 / +2
Query: 836 LRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVRPDLVKSGDSAG 663
LRWL+G+ RSVVYVNFGS+TVMS+ L EFAWGLAN+G FLW VRPD+VKS + AG
Sbjct: 11 LRWLDGKRRRSVVYVNFGSVTVMSSHDLAEFAWGLANSGQEFLWIVRPDVVKSSELAG 184
Score = 94.5 bits (200), Expect(2) = 3e-030
Identities = 49/104 (47%), Positives = 51/104 (49%)
Frame = -3 / +3
Query: 667 PGCRQSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGGTPRWRVFAAAFPCCAGPSS 488
P C S R GA R+ C P CS*RT GGT RWR AAA CCAGPSS
Sbjct: 186 PRCPPGSWRRPGAGGSWRAGATRRRCCGTTPCACS*RTAGGTRRWRPSAAACRCCAGPSS 365
Query: 487 PSSRPTADTSAPSGASEKRSVTMYSGAR*SRSYGRPWRGRKGKR 356
SSRPTA TSA SG RS T G R R W + R
Sbjct: 366 RSSRPTAGTSASSGGWRWRSATTCGGRRSRGGSRRRWPATRAGR 497
Score = 71.2 bits (149), Expect(2) = 2e-053
Identities = 34/58 (58%), Positives = 37/58 (63%)
Frame = +1 / -1
Query: 661 SPAESPLLTRSGRTFHRK**PVLASPHANSTSCSLDITVMLPKLTYTTERGARPLSHR 834
+PA S L T SG T R P+LASPHANS L ITV LPK TYTT+R P SHR
Sbjct: 186 APASSLLFTTSGLTIQRNSWPLLASPHANSARSWLLITVTLPKFTYTTDRRLLPSSHR 13
Score = 65.7 bits (137), Expect(2) = 3e-023
Identities = 30/69 (43%), Positives = 35/69 (50%)
Frame = +3 / -3
Query: 411 PLYIVTDLFSDAPXXXXXXXXXXXXXXXXPAQHGNAAANTLQRGVPPGVRQEHPHGIMLQ 590
P ++V DL P PAQH +AAA L R VPP VRQEH HG++ Q
Sbjct: 442 PPHVVADLHRHPPLDALVPAVGLLLREEGPAQHRHAAAEGLHRRVPPAVRQEHAHGVVPQ 263
Query: 591 HSCLRAPRR 617
H L AP R
Sbjct: 262 HRLLVAPAR 236
Score = 63.4 bits (132), Expect(2) = 3e-023
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = +3 / -3
Query: 657 RQPGGVATLDEVRAYVP*EVVAGVGQPPRELDQLLVGHHRDAPEVDIHNGARRTAV 824
R G +A L +VR P E++A VGQPPREL Q++ HH APEV +HN + AV
Sbjct: 190 RGAGELAALHDVRPDDPEELLAAVGQPPRELRQVVAAHHGHAPEVHVHNRSAPLAV 23
Score = 57.9 bits (120), Expect(2) = 3e-030
Identities = 29/59 (49%), Positives = 36/59 (61%)
Frame = -1 / +1
Query: 831 VAQRPCAALRCVCQLREHHGDVQRAAGRVRVGAGQHRLLLPMERTPGPRQEWRLRRAAA 655
VA+R A + CV +LRE D Q G VRVGAGQ R +P++R G R+E R RR A
Sbjct: 16 VARRQEAPICCVRELRERDRDEQPRPGGVRVGAGQQRPGVPLDRQAGRREEQRARRRRA 192
Score = 23.1 bits (44), Expect(3) = 1e-078
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 317 AAAGPDGRSMRNVDRLIEEVLL 252
AA RS+ N+D LI VLL
Sbjct: 527 AAVRSTARSLTNLDSLIHGVLL 592
>gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006N01f, mRNA sequence
Length = 584
Score = 232 bits (502), Expect(2) = 1e-071
Identities = 91/143 (63%), Positives = 109/143 (76%)
Frame = -2 / +1
Query: 677 GDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCW 498
GD A LPPEF + EGR +L++WCPQ AVL H+AVGVFLTHSGWNST++S+CGGVP LCW
Sbjct: 85 GDVAVLPPEFLESIEGRGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCW 264
Query: 497 PFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRRVTELRDSAV 318
PFFAEQQTN RY C EWG+ EIG DV+R VE+ IREAM GEKG+EM RR E R++ V
Sbjct: 265 PFFAEQQTNSRYSCVEWGVAMEIGQDVRRETVEAKIREAMSGEKGKEMRRRAEEWRETGV 444
Query: 317 AAAGPDGRSMRNVDRLIEEVLLA 249
A P G S N+ RL+ +V L+
Sbjct: 445 RATRPGGPSRANLGRLVADVFLS 513
Score = 183 bits (394), Expect(2) = 4e-049
Identities = 78/112 (69%), Positives = 86/112 (76%)
Frame = +1 / -1
Query: 346 RRSISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQ 525
RR IS PFSP +ASR+ ST R TS PIS PHS LYR LVCCSAKKGQHS+GTPP
Sbjct: 416 RRRISFPFSPDIASRILASTVSRRTS*PISMATPHSTQLYRLLVCCSAKKGQHSVGTPPH 237
Query: 526 ILSSVEFHPECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESPL 681
LS+VEFHPECVRNTPTASC STA+CGH + S RPS+ + NSGGS A SPL
Sbjct: 236 RLSTVEFHPECVRNTPTASCLSTASCGHQLASTPRPSMDSRNSGGSTATSPL 81
Score = 111 bits (238), Expect = 5e-024
Identities = 58/120 (48%), Positives = 66/120 (55%)
Frame = -3 / +2
Query: 688 SSRVATPPGCRQSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGGTPRWRVFAAAFP 509
+S AT P CR+SS R AC GARR+ C CS*RT GGT RW AA
Sbjct: 74 TSSRATSPCCRRSSWSPSRGAACWRAGARRRQC*GTRQ*ACS*RTQGGTRRWTACAAGCR 253
Query: 508 CCAGPSSPSSRPTADTSAPSGASEKRSVTMYSGAR*SRSYGRPWRGRKGKRCSGA*LNSG 329
CAGPSS SSRPTA T+A SGA RSV G R YGR R+G+RC+ + G
Sbjct: 254 RCAGPSSRSSRPTAGTAAWSGAWPWRSVRTCGGRRWKPRYGRRCPARRGRRCAAGPRSGG 433
Score = 57.9 bits (120), Expect(2) = 1e-071
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / +1
Query: 764 NEQLVEFAWGLANTGYYFLWNVRPDLVK 681
NE+L+EFAWGLAN+G FLW +RPDLVK
Sbjct: 1 NEELLEFAWGLANSGQSFLWIIRPDLVK 84
Score = 32.2 bits (64), Expect(2) = 4e-049
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2 / -2
Query: 704 SIGSSSRCWPAPTRTRPAAR 763
S G + RCW APT+TR A R
Sbjct: 61 STGRTGRCWLAPTQTRGAPR 2
>gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008E02f, mRNA sequence
Length = 718
Score = 154 bits (331), Expect(3) = 4e-069
Identities = 59/98 (60%), Positives = 71/98 (72%)
Frame = -2 / +2
Query: 677 GDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCW 498
GD+A LP EF A T GR ++++WCPQ VL H AVG FLTHSGWNS LES+ GGVP++ W
Sbjct: 410 GDAAVLPEEFLAETAGRGLMASWCPQQEVLNHPAVGAFLTHSGWNSALESLFGGVPVISW 589
Query: 497 PFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIRE 384
PFFA+QQTNCR +C EWG G EI +V+R L E
Sbjct: 590 PFFADQQTNCRSQCNEWGRGMEIDSNVRRDARAGLYTE 703
Score = 114 bits (244), Expect(3) = 4e-069
Identities = 46/72 (63%), Positives = 57/72 (79%)
Frame = -2 / +2
Query: 896 QANSPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGY 717
Q ++P + I +LWKEQ+ L+WL+GR P SVVYVNFGSITVM+N Q+VEFAWGLA +G
Sbjct: 194 QPSTPRSVINLSLWKEQDECLQWLDGRQPGSVVYVNFGSITVMTNAQMVEFAWGLAQSGK 373
Query: 716 YFLWNVRPDLVK 681
F+W VR DLVK
Sbjct: 374 QFMWIVRRDLVK 409
Score = 112 bits (240), Expect(2) = 2e-035
Identities = 52/96 (54%), Positives = 58/96 (60%)
Frame = +1 / -2
Query: 394 SDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILSSVEFHPECVRNTP 573
S + + R T IS P PHS+H QLVC SAK GQ GTPP LSS EF P CVR P
Sbjct: 693 SPARASRRTLLSISIPRPHSLHWDLQLVCWSAKNGQLITGTPPNRLSSAEFQPLCVRKAP 514
Query: 574 TASCSSTAACGHHVDSMLRPSVAAENSGGSPAESPL 681
TA ST+ CGH RP+V+A NS GS A SPL
Sbjct: 513 TAGWFSTSCCGHQEAMSPRPAVSARNSSGSTAASPL 406
Score = 62.0 bits (129), Expect(2) = 2e-021
Identities = 35/80 (43%), Positives = 42/80 (52%)
Frame = -1 / +1
Query: 921 PADGAEQRAGEQSCRCYWVQPVEXXXXXAPVAQRPCAALRCVCQLREHHGDVQRAAGRVR 742
PA A RA + + QP+E VA R A LR V QL +HH QRA G VR
Sbjct: 169 PAPAACGRAAVHAALRHQPQPLEGAGRMPAVAGRQAARLRRVRQLWQHHRHDQRADGGVR 348
Query: 741 VGAGQHRLLLPMERTPGPRQ 682
VGAG R + ++R P PRQ
Sbjct: 349 VGAGAEREAVHVDRPP*PRQ 408
Score = 60.6 bits (126), Expect(2) = 2e-021
Identities = 38/91 (41%), Positives = 48/91 (52%)
Frame = -3 / +3
Query: 688 SSRVATPPGCRQSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGGTPRWRVFAAAFP 509
+S ATP +SS R+R GAR + C + P S RT GT R R +AA+
Sbjct: 399 TSSRATPQCSPRSSWPRRRGAGSWPPGARSKRC*TTPPSAPSSRTAVGTRRSRACSAAYR 578
Query: 508 CCAGPSSPSSRPTADTSAPSGASEKRSVTMY 416
AG SSP++RPTA SA SGA RS +
Sbjct: 579 *SAGHSSPTNRPTAGPSATSGAVGWRSTATF 671
Score = 57.0 bits (118), Expect(2) = 2e-035
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +3 / -1
Query: 681 LDEVRAYVP*EVVAGVGQPPRELDQLLVGHHRDAPEVDIHNGARRTAV 824
LDEV A P E++ + QPPREL L VGH DA +VD+H+GA AV
Sbjct: 409 LDEVTADDPHELLPALRQPPRELHHLRVGHDGDAAKVDVHDGAGLPAV 266
Score = 32.2 bits (64), Expect(3) = 4e-069
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2 / +2
Query: 1043 RETEGMSQASAVVINTFDELDATLLAAMAKL 951
RETE + ASAV++N F +L+ + AM L
Sbjct: 50 RETERTAGASAVILNRFGDLEGEAVEAMEAL 142
>gb|AL505675.1|AL505675 AL505675 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09D01V 5', mRNA sequence
Length = 473
Score = 260 bits (562), Expect = 1e-068
Identities = 105/137 (76%), Positives = 118/137 (86%)
Frame = -2 / -2
Query: 656 PEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQ 477
PEFSAATE RSMLSTWCPQ VLE +A+GVFLTH GWNS+LE CGGVPM+CWP F EQQ
Sbjct: 472 PEFSAATEDRSMLSTWCPQEKVLEXEAIGVFLTHXGWNSSLEGXCGGVPMVCWPXFTEQQ 293
Query: 476 TNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRRVTELRDSAVAAAGPDG 297
TNCRYKCTEWGIG EIG+ V R EVE++ REAMEG KGQEM RRV +L+++AVA+A DG
Sbjct: 292 TNCRYKCTEWGIGMEIGEXVTRTEVEAIXREAMEGGKGQEMRRRVLKLQENAVASARHDG 113
Query: 296 RSMRNVDRLIEEVLLA* 246
RSMRNVDRLI+EVLLA*
Sbjct: 112 RSMRNVDRLIQEVLLA* 62
Score = 186 bits (401), Expect(2) = 5e-051
Identities = 78/105 (74%), Positives = 84/105 (80%)
Frame = +1 / +3
Query: 343 TRRSISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPP 522
TRR IS PF PSMASR STS T SPIS PMPHSVHLYRQLVCCS KGQH++GTPP
Sbjct: 159 TRRRISWPFPPSMASRXMASTSVLVTXSPISIPMPHSVHLYRQLVCCSVXKGQHTIGTPP 338
Query: 523 QILSSVEFHPECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSG 657
+ S+ EFHP CVRNTP AS SST +CGHHV+SMLR SVAAENSG
Sbjct: 339 XMPSNDEFHPXCVRNTPMASXSSTFSCGHHVESMLRSSVAAENSG 473
Score = 156 bits (335), Expect = 2e-037
Identities = 70/133 (52%), Positives = 82/133 (61%)
Frame = -3 / -3
Query: 655 QSSQLRQRDEACCLRGARRQLCWSMMPWGCS*RTPGGTPRWRVFAAAFPCCAGPSSPSSR 476
+SS+ RQ+ EAC GARR+ CWS P GCS R GGT RW+ AA CAGP S SSR
Sbjct: 471 RSSRRRQKTEACSRHGARRRRCWSXKP*GCSSRIXGGTHRWKAXAAVCRWCAGPXSRSSR 292
Query: 475 PTADTSAPSGASEKRSVTMYSGAR*SRSYGRPWRGRKGKRCSGA*LNSGTAPWPLQGLTD 296
PTA TSA SGAS R G + YGRPWRG + KRC GA +S P P +G+T+
Sbjct: 291 PTAGTSARSGASGWRLGXR*RGPKSRPXYGRPWRGGRAKRCDGAC*SSRRTPLPRRGMTE 112
Query: 295 GLCAT*TGSSKRC 257
G C GSSK+C
Sbjct: 111 GPCVMLIGSSKKC 73
Score = 35.4 bits (71), Expect(2) = 5e-051
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3 / +2
Query: 255 EHLFDEPVYVAHRPSVRPCSGHGAVPE 335
+H DEP+ + H PSV P G+G + E
Sbjct: 71 QHFLDEPINITHGPSVMPRRGNGVLLE 151
>gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008B22f, mRNA sequence
Length = 741
Score = 133 bits (284), Expect(4) = 6e-066
Identities = 50/79 (63%), Positives = 60/79 (75%)
Frame = -2 / +3
Query: 662 LPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAE 483
LPPEF AT+GR +L++WC Q AVL+H A+GVFLTH GWNST +I G+PMLCWPFFAE
Sbjct: 363 LPPEFVEATKGRCLLASWCEQEAVLQHPALGVFLTHCGWNSTFVAISAGLPMLCWPFFAE 542
Query: 482 QQTNCRYKCTEWGIGKEIG 426
QQTN RY C + G +G
Sbjct: 543 QQTNSRYACLDDEWGVRLG 599
Score = 107 bits (228), Expect(4) = 6e-066
Identities = 43/72 (59%), Positives = 54/72 (75%)
Frame = -2 / +3
Query: 899 VQANSPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTG 720
+Q + I ++LW+E + L WL+GR P SVVYVNFGSIT MS E+LVEFAWGLAN+G
Sbjct: 114 LQQEQLLPGIRASLWREDRSCLEWLDGREPGSVVYVNFGSITTMSGEELVEFAWGLANSG 293
Query: 719 YYFLWNVRPDLV 684
+ FLW VR DL+
Sbjct: 294 HPFLWIVRKDLL 329
Score = 101 bits (216), Expect(3) = 3e-042
Identities = 42/80 (52%), Positives = 52/80 (65%)
Frame = +1 / -3
Query: 424 SPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILSSVEFHPECVRNTPTASCSSTAAC 603
+P P S H R+LVCCSAK GQ SMG+P + + VEF P+CVR TP+A C STA+C
Sbjct: 601 TPNRTPHSSSRHA*RELVCCSAKNGQQSMGSPALMATKVEFQPQCVRKTPSAGCCSTASC 422
Query: 604 GHHVDSMLRPSVAAENSGGS 663
H + P VA+ NSGGS
Sbjct: 421 SHQLARRHLPLVASTNSGGS 362
Score = 75.8 bits (159), Expect(3) = 3e-042
Identities = 37/71 (52%), Positives = 42/71 (59%)
Frame = +1 / -3
Query: 685 TRSGRTFHRK**PVLASPHANSTSCSLDITVMLPKLTYTTERGARPLSHRSGASCSFHRL 864
+RS T HRK P LA PHANSTS S D+ VMLPKLTYTT+ G+ P SH S RL
Sbjct: 328 SRSFLTIHRKGWPELARPHANSTSSSPDMVVMLPKLTYTTDPGSLPSSHSRQERSSRQRL 149
Query: 865 DPIAATGLFAC 897
I + C
Sbjct: 148 ARIPGSSCSCC 116
Score = 60.6 bits (126), Expect(4) = 4e-024
Identities = 27/46 (58%), Positives = 32/46 (69%)
Frame = +3 / -2
Query: 687 EVRAYVP*EVVAGVGQPPRELDQLLVGHHRDAPEVDIHNGARRTAV 824
+V + P E VAGVGQ PREL QLL GH DAP+VD+H+G AV
Sbjct: 326 QVLPHDPQEGVAGVGQAPRELHQLLAGHGGDAPKVDVHHGPGLPAV 189
Score = 55.6 bits (115), Expect(4) = 1e-022
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = -1 / +2
Query: 567 VPDALRVELHAGEYLRRRSHAVLALLRRAADQLPIQVHR 451
+P LR+ELH + RR +HA+LA+LRRAADQLP++V R
Sbjct: 458 LPHTLRLELHLCGHQRRAAHALLAILRRAADQLPLRVPR 574
Score = 55.6 bits (115), Expect(4) = 1e-022
Identities = 34/78 (43%), Positives = 39/78 (50%)
Frame = -1 / +2
Query: 864 QPVEXXXXXAPVAQRPCAALRCVCQLREHHGDVQRAAGRVRVGAGQHRLLLPMERTPGPR 685
QP+ VA R A +R V QL EHH V+R AG VRVG GQ R LP++R GP
Sbjct: 149 QPLARGPLLPRVAGRQGARVRGVRQLWEHHHHVRRGAGGVRVGPGQLRPPLPVDREEGPA 328
Query: 684 QEWRLRRAAARVLSCDRG 631
RR S RG
Sbjct: 329 GGEEGRRRRRAAASRVRG 382
Score = 51.0 bits (105), Expect(4) = 4e-024
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +3 / -2
Query: 498 PAQHGNAAANTLQRGVPPGVRQEHPHGIMLQHSCLRAPRRQHASSLCRS*ELWRQPGG 671
PA+HG A+ + GVP V +E +LQH L AP RQ A +L EL RQP G
Sbjct: 527 PAEHGQPGADGHKGGVPAAVCEEDAERRVLQHRLLLAPARQEAPALGGLHELGRQPHG 354
Score = 37.7 bits (76), Expect(4) = 6e-066
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2 / +3
Query: 452 EWGIGKEIGDDVQRGEVESLIREAMEGE 369
EWG+ +GD+V+R VES IR AM G+
Sbjct: 579 EWGVRLGVGDEVRREVVESKIRAAMGGD 662
Score = 33.1 bits (66), Expect(3) = 3e-042
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3 / -2
Query: 942 GRQELRHGSEQRRVELVEGVDD 1007
GRQ+ HG ++R ++LV+GVDD
Sbjct: 77 GRQDGAHGVQRRPLQLVQGVDD 12
Score = 32.7 bits (65), Expect(4) = 4e-024
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1 / -3
Query: 370 SPSMASRMSDSTSPRCTSSPISFPMPHS 453
SP MA+ + DST+ R TSSP PHS
Sbjct: 661 SPPMAALILDSTTSRRTSSPTPNRTPHS 578
Score = 30.9 bits (61), Expect(4) = 6e-066
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2 / +3
Query: 1016 SAVVINTFDELDATLLAAMAKLLPP 942
+A ++NT DEL+ L AM +LPP
Sbjct: 3 AAGIVNTLDELERPALDAMRAVLPP 77
Score = 25.8 bits (50), Expect(4) = 1e-022
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1 / +2
Query: 1002 QHLRRARRDAARCHGEAPAAHL 937
QHL RA A H PAAH+
Sbjct: 17 QHLGRAGAAGAGRHARRPAAHM 82
Score = 24.4 bits (47), Expect(4) = 1e-022
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3 / +1
Query: 475 PTADTSAPSGASEKRSVTMYSGAR*SRSYGRPW 377
P S SGAS+ S + S GRPW
Sbjct: 556 PATRASTMSGASDWESAMRFDARWWSPR*GRPW 654
Score = 22.1 bits (42), Expect(4) = 4e-024
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = +2 / -1
Query: 935 CRWAAGASPWQ 967
C WAAG W+
Sbjct: 84 CMWAAGRRAWR 52
>gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008D18f, mRNA sequence
Length = 769
Score = 127 bits (273), Expect(4) = 3e-062
Identities = 47/75 (62%), Positives = 57/75 (76%)
Frame = -2 / +3
Query: 662 LPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAE 483
LPPEF AT+GR +L++WC Q AVL+H A+GVFLTH GWNST +I G+PMLCWPF E
Sbjct: 363 LPPEFVEATKGRCLLASWCEQEAVLQHPALGVFLTHCGWNSTFVAISAGLPMLCWPFLRE 542
Query: 482 QQTNCRYKCTEWGIG 438
QQTN RY C ++ G
Sbjct: 543 QQTNSRYACLDYEWG 587
Score = 107 bits (228), Expect(4) = 3e-062
Identities = 43/72 (59%), Positives = 54/72 (75%)
Frame = -2 / +3
Query: 899 VQANSPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTG 720
+Q + I ++LW+E + L WL+GR P SVVYVNFGSIT MS E+LVEFAWGLAN+G
Sbjct: 114 LQQEQLLPGIRASLWREDRSCLEWLDGREPGSVVYVNFGSITTMSGEELVEFAWGLANSG 293
Query: 719 YYFLWNVRPDLV 684
+ FLW VR DL+
Sbjct: 294 HPFLWIVRKDLL 329
Score = 97.3 bits (206), Expect(4) = 2e-042
Identities = 39/71 (54%), Positives = 48/71 (67%)
Frame = +1 / -1
Query: 451 SVHLYRQLVCCSAKKGQHSMGTPPQILSSVEFHPECVRNTPTASCSSTAACGHHVDSMLR 630
S H R+LVCCS K GQ SMG+P + + VEF P+CVR TP+A C STA+C H +
Sbjct: 574 SRHA*RELVCCSRKNGQQSMGSPALMATKVEFQPQCVRKTPSAGCCSTASCSHQLARRHL 395
Query: 631 PSVAAENSGGS 663
P VA+ NSGGS
Sbjct: 394 PLVASTNSGGS 362
Score = 75.8 bits (159), Expect(4) = 2e-042
Identities = 37/71 (52%), Positives = 42/71 (59%)
Frame = +1 / -1
Query: 685 TRSGRTFHRK**PVLASPHANSTSCSLDITVMLPKLTYTTERGARPLSHRSGASCSFHRL 864
+RS T HRK P LA PHANSTS S D+ VMLPKLTYTT+ G+ P SH S RL
Sbjct: 328 SRSFLTIHRKGWPELARPHANSTSSSPDMVVMLPKLTYTTDPGSLPSSHSRQERSSRQRL 149
Query: 865 DPIAATGLFAC 897
I + C
Sbjct: 148 ARIPGSSCSCC 116
Score = 33.1 bits (66), Expect(4) = 2e-042
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3 / -3
Query: 942 GRQELRHGSEQRRVELVEGVDD 1007
GRQ+ HG ++R ++LV+GVDD
Sbjct: 77 GRQDGAHGVQRRPLQLVQGVDD 12
Score = 30.9 bits (61), Expect(4) = 3e-062
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2 / +3
Query: 452 EWGIGKEIGDDVQRGEVESLIREAMEGE 369
EWG+G E+ DDV+ E I M GE
Sbjct: 579 EWGVGLEVCDDVELKGGECKIMAGMGGE 662
Score = 30.4 bits (60), Expect(4) = 3e-062
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2 / +3
Query: 1007 VINTFDELDATLLAAMAKLLPP 942
V+NT DEL+ L AM +LPP
Sbjct: 12 VVNTLDELERPALDAMRAVLPP 77
Score = 23.1 bits (44), Expect(4) = 2e-042
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1 / -1
Query: 370 SPSMASRMSDSTSPRCTSSPISFPMPHS 453
SP M + + S TSS S P PHS
Sbjct: 661 SPPMPAIILHSPPLSSTSSQTSNPTPHS 578
>gb|BJ467287.1|BJ467287 BJ467287 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26i01 3', mRNA sequence
Length = 441
Score = 226 bits (489), Expect = 1e-058
Identities = 92/110 (83%), Positives = 101/110 (91%)
Frame = -2 / -3
Query: 575 VGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVES 396
VGVFLTHSGWNS+LE ICGGVPM+CWPFFA+QQTNCRYKCTEWGIG EIGDDV+R EVE+
Sbjct: 439 VGVFLTHSGWNSSLEGICGGVPMVCWPFFADQQTNCRYKCTEWGIGMEIGDDVKRTEVEA 260
Query: 395 LIREAMEGEKGQEMLRRVTELRDSAVAAAGPDGRSMRNVDRLIEEVLLA* 246
LIREAMEG+KG+EM RRV EL +SAVA+A P GRSMRNVDRLI EVLLA*
Sbjct: 259 LIREAMEGDKGREMRRRVLELWESAVASARPGGRSMRNVDRLIHEVLLA* 110
Score = 142 bits (304), Expect = 4e-033
Identities = 67/113 (59%), Positives = 72/113 (63%)
Frame = -3 / -1
Query: 577 PWGCS*RTPGGTPRWRVFAAAFPCCAGPSSPSSRPTADTSAPSGASEKRSVTMYSGAR*S 398
P G S RTPGGT RWR +AAAF C GPSS SRPT TSA SGAS RS TM G R
Sbjct: 441 PLGSSSRTPGGTRRWRAYAAAFRWCVGPSSRISRPTVVTSARSGASGWRSGTM*RGPRWR 262
Query: 397 RSYGRPWRGRKGKRCSGA*LNSGTAPWPLQGLTDGLCAT*TGSSKRCS*PRLS 239
SYGRPWR +G+R A +SG APWPL L +G CA GSS RC *P S
Sbjct: 261 PSYGRPWRETRGER*DDACWSSGRAPWPLHVLAEGPCAMLIGSSTRCC*PETS 103
Score = 137 bits (294), Expect(2) = 7e-036
Identities = 60/78 (76%), Positives = 63/78 (80%)
Frame = +1 / +3
Query: 343 TRRSISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPP 522
TRR IS P SPSMASRM STS TSSPIS PMPHSVHL RQLVC SAKKGQH++GTPP
Sbjct: 207 TRRLISRPLSPSMASRMRASTSVLFTSSPISIPMPHSVHL*RQLVC*SAKKGQHTIGTPP 386
Query: 523 QILSSVEFHPECVRNTPT 576
+ SS EFHPECVR TPT
Sbjct: 387 HMPSSDEFHPECVRKTPT 440
Score = 112 bits (239), Expect = 4e-024
Identities = 49/109 (44%), Positives = 57/109 (52%)
Frame = +3 / +2
Query: 249 G*EHLFDEPVYVAHRPSVRPCSGHGAVPEFSXXXXXXXXXXXXXXXXYERLYLAPLYIVT 428
G*+HL DEP+ +AH PS R C GHGA+PE YE L+L PL+IV
Sbjct: 113 G*QHLVDEPINIAHGPSARTCRGHGALPELQHASSHLSPLVSLHGLPYEGLHLGPLHIVP 292
Query: 429 DLFSDAPXXXXXXXXXXXXXXXXPAQHGNAAANTLQRGVPPGVRQEHPH 575
DL DAP P H NAAA LQR VPPGVR+E P+
Sbjct: 293 DLHPDAPLRALVTTVGLLIREEGPTHHRNAAAYALQRRVPPGVREEDPN 439
Score = 33.6 bits (67), Expect(2) = 7e-036
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +2 / +1
Query: 248 RLGAPLR*ACLRCA*TVRQALQRPRRCP 331
RL P *A CA T RQ +QRPRR P
Sbjct: 112 RLATPRG*ADQHCAWTFRQDVQRPRRSP 195
>gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. vulgare cDNA clone HV06O20
3-PRIME, mRNA sequence
Length = 490
Score = 181 bits (389), Expect = 8e-045
Identities = 69/111 (62%), Positives = 84/111 (75%)
Frame = -2 / -2
Query: 677 GDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCW 498
GD+A LPPEF AT+GR +L++WC Q AV+ H+AVG FLTH GWNS +E + GVPMLCW
Sbjct: 468 GDAAVLPPEFIEATKGRCLLASWCEQEAVMRHEAVGAFLTHCGWNSMMEGLGAGVPMLCW 289
Query: 497 PFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRR 345
PFFAEQQTN RY C EWG+G E+GDDV+R VE+ IRE M G + +RR
Sbjct: 288 PFFAEQQTNSRYACVEWGVGMEVGDDVRRVVVEARIREVMGGGEVGREMRR 136
Score = 123 bits (263), Expect = 2e-027
Identities = 54/102 (52%), Positives = 64/102 (62%)
Frame = +1 / +2
Query: 373 PSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILSSVEFHP 552
P + S + ST+ R TSSP S P PHS H R VCCSAKKGQ S+GTP S +EFHP
Sbjct: 164 PPITSLILASTTTRRTSSPTSIPTPHSTHA*RLFVCCSAKKGQQSIGTPAPSPSIMEFHP 343
Query: 553 ECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESP 678
+CV+ PTAS TA+C H + P VA+ NSGG A SP
Sbjct: 344 QCVKKAPTAS*RMTASCSHQLARRHLPLVASMNSGGRTAASP 469
>gb|BF257303.2|BF257303 HVSMEf0012H19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012H19f, mRNA sequence
Length = 847
Score = 174 bits (374), Expect = 9e-043
Identities = 77/163 (47%), Positives = 95/163 (58%)
Frame = -2 / +3
Query: 887 SPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFL 708
SP AA S+L ++ + L+WL+ + SV+YV+FGS+ MS LVE AWG+A + FL
Sbjct: 120 SPAAAAESSLLRQDRSCLKWLDAQPAASVLYVSFGSLACMSARDLVETAWGIAGSRVPFL 299
Query: 707 WNVRPDLVKSGDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLES 528
W VRP LV + LP F AAT GR M+ W PQ VL H AV F TH GWNST ES
Sbjct: 300 WVVRPGLVAADGLTRLPDGFEAATSGRGMVVEWAPQEEVLRHPAVAGFWTHGGWNSTTES 479
Query: 527 ICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVE 399
+C GVPMLC P +Q N R W +G E +R E E
Sbjct: 480 VCEGVPMLCRPHLXDQMGNARDVKHVWKVGLERQTHARRVEQE 608
Score = 116 bits (248), Expect = 2e-025
Identities = 62/152 (40%), Positives = 75/152 (49%)
Frame = +1 / -1
Query: 430 ISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILSSVEFHPECVRNTPTASCSSTAACGH 609
+S P H+ S K G+ S+GTP LS VEF P CV+N TA C ST++CG
Sbjct: 577 LSKPTFHTCFTSLAFPIWSXKCGRQSIGTPSHTLSVVEFQPPCVQNPATAGCRSTSSCGA 398
Query: 610 HVDSMLRPSVAAENSGGSPAESPLLTRSGRTFHRK**PVLASPHANSTSCSLDITVMLPK 789
H ++ RP VAA N GS TR GRT R + A PHA ST D+ LPK
Sbjct: 397 HSTTIPRPLVAASNPSGSRVSPSAATRPGRTTQRNGTRLPAMPHAVSTRSRADMHARLPK 218
Query: 790 LTYTTERGARPLSHRSGASCSFHRLDPIAATG 885
LTY+T+ SH RL AA G
Sbjct: 217 LTYSTDAAGCASSHFRQLRSCRSRLLSAAAAG 122
>gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023F14f, mRNA sequence
Length = 816
Score = 172 bits (370), Expect = 3e-042
Identities = 69/148 (46%), Positives = 96/148 (64%)
Frame = -2 / +3
Query: 818 RAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVRPDLVKSGDSAGLPPEFSAA 639
+A +VVYV+ GS+ V+S E+ EF GL + G+ FLW +RPD+V + +A L A
Sbjct: 6 QADGTVVYVSLGSLAVISVEEFTEFLSGLVSAGHPFLWVLRPDMVGASQNAVLQDAIRTA 185
Query: 638 TEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYK 459
+ ++ + W PQ VL H AVG FLTH+GWNSTLES+ GVP +CWPFF +QQ N R+
Sbjct: 186 GKSKARVVEWAPQRDVLRHRAVGCFLTHAGWNSTLESVAEGVPTVCWPFFVDQQINSRFM 365
Query: 458 CTEWGIGKEIGDDVQRGEVESLIREAME 375
WG G ++ D ++ VE ++REAME
Sbjct: 366 GAVWGSGLDMKDVCEKAVVERMVREAME 449
Score = 90.0 bits (190), Expect(2) = 2e-025
Identities = 40/79 (50%), Positives = 49/79 (62%)
Frame = +1 / -3
Query: 376 SMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILSSVEFHPE 555
SMAS ST+ +S +S P P + + R L+C S K GQH++GTP LSSVEFHP
Sbjct: 448 SMASLTIRSTTAFSHTSFMSSPEPQTAPMNRLLICWSTKNGQHTVGTPSATLSSVEFHPA 269
Query: 556 CVRNTPTASCSSTAACGHH 612
CVR PTA ST+ CG H
Sbjct: 268 CVRKQPTARWRSTSRCGAH 212
Score = 46.4 bits (95), Expect(2) = 2e-025
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +1 / -3
Query: 685 TRSGRTFHRK**PVLASPHANSTSCSLDITVMLPKLTYTT 804
T SG + RK P L SP NS + S ++T LPKLTYTT
Sbjct: 139 TMSGLSTQRKGWPALTSPDRNSVNSSTEMTARLPKLTYTT 20
>gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
5-PRIME, mRNA sequence
Length = 647
Score = 167 bits (360), Expect(2) = 5e-042
Identities = 64/107 (59%), Positives = 78/107 (72%)
Frame = -2 / +3
Query: 677 GDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCW 498
GD+A LP EF A T GR ++++WCPQ VL H AVG FLTHSGWNS LES+ GGVP++ W
Sbjct: 60 GDAAVLPEEFLAETAGRGLMASWCPQQEVLNHPAVGAFLTHSGWNSALESLFGGVPVISW 239
Query: 497 PFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQE 357
PFFA+QQTNCRY+C EWG+G EI +VQR V LI +GQ+
Sbjct: 240 PFFADQQTNCRYQCNEWGVGMEIDSNVQRDAVAGLITXINGRGEGQK 380
Score = 127 bits (271), Expect = 1e-028
Identities = 58/110 (52%), Positives = 66/110 (60%)
Frame = +1 / -2
Query: 352 SISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQIL 531
S CP + S +S +T+ R T IS P PHS+H Y QLVC SAK GQ GTPP L
Sbjct: 385 SCFCPSPLPLXSVISPATASRWTLLSISMPTPHSLHWYLQLVCWSAKNGQLITGTPPNRL 206
Query: 532 SSVEFHPECVRNTPTASCSSTAACGHHVDSMLRPSVAAENSGGSPAESPL 681
SS EF P CVR PTA ST+ CGH RP+V+A NS GS A SPL
Sbjct: 205 SSAEFQPLCVRKAPTAGWFSTSCCGHQEAMSPRPAVSARNSSGSTAASPL 56
Score = 24.0 bits (46), Expect(2) = 5e-042
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2 / +3
Query: 725 TGYYFLWNVRPDLVK 681
+G F+W VR DLVK
Sbjct: 15 SGKQFMWIVRRDLVK 59
>gb|BQ768134.1|BQ768134 EBro08_SQ010_E19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_E19 5', mRNA sequence
Length = 469
Score = 115 bits (245), Expect(3) = 2e-041
Identities = 47/72 (65%), Positives = 57/72 (79%)
Frame = -2 / +1
Query: 896 QANSPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGY 717
Q +P +AI +LWKEQ+ L+WL+GR P SVVYVNFGSITVM+N Q+VEFAWGLA +G
Sbjct: 124 QPPTPRSAINLSLWKEQDECLQWLDGRQPGSVVYVNFGSITVMTNAQMVEFAWGLAQSGK 303
Query: 716 YFLWNVRPDLVK 681
F+W VR DLVK
Sbjct: 304 QFMWIVRRDLVK 339
Score = 67.5 bits (141), Expect(3) = 2e-041
Identities = 26/43 (60%), Positives = 31/43 (72%)
Frame = -2 / +1
Query: 677 GDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSG 549
GD+A LP EF A T GR ++++WCPQ VL H AV FLTHSG
Sbjct: 340 GDAAVLPEEFLAETAGRGLMASWCPQQEVLNHPAVRAFLTHSG 468
Score = 25.8 bits (50), Expect(3) = 2e-041
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2 / +1
Query: 1019 ASAVVINTFDELDATLLAAMAKL 951
ASAV++N+F +L+ + AM L
Sbjct: 4 ASAVILNSFGDLEGEAVEAMEAL 72
>gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. vulgare cDNA clone HV06P19
3-PRIME, mRNA sequence
Length = 447
Score = 169 bits (364), Expect = 2e-041
Identities = 64/104 (61%), Positives = 78/104 (75%)
Frame = -2 / -1
Query: 656 PEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQ 477
PEF AT+GR +L++WC Q AV+ H+AVG FLTH GWNS +E + GVPMLCWPFFAEQQ
Sbjct: 447 PEFIEATKGRCLLASWCEQEAVMRHEAVGAFLTHCGWNSMMEGLGAGVPMLCWPFFAEQQ 268
Query: 476 TNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRR 345
TN RY C EWG+G E+GDDV+R VE+ IRE M G + +RR
Sbjct: 267 TNSRYACVEWGVGMEVGDDVRRVVVEARIREVMGGGEVGREMRR 136
Score = 112 bits (239), Expect = 4e-024
Identities = 49/94 (52%), Positives = 59/94 (62%)
Frame = +1 / +2
Query: 373 PSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILSSVEFHP 552
P + S + ST+ R TSSP S P PHS H R VCCSAKKGQ S+GTP S +EFHP
Sbjct: 164 PPITSLILASTTTRRTSSPTSIPTPHSTHA*RLFVCCSAKKGQQSIGTPAPSPSIMEFHP 343
Query: 553 ECVRNTPTASCSSTAACGHHVDSMLRPSVAAENS 654
+CV+ PTAS TA+C H + P VA+ NS
Sbjct: 344 QCVKKAPTAS*RMTASCSHQLARRHLPLVASMNS 445
>gb|CA016523.1|CA016523 HV08I24u HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
3-PRIME, mRNA sequence
Length = 487
Score = 167 bits (360), Expect = 8e-041
Identities = 67/109 (61%), Positives = 80/109 (73%)
Frame = -2 / -1
Query: 578 AVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVE 399
AVG FLTHSGWNS LES+ GGVP++ WPFFA+QQTNCRY+C EWG+G EI +VQR V
Sbjct: 487 AVGAFLTHSGWNSALESLFGGVPVISWPFFADQQTNCRYQCNEWGVGMEIDSNVQRDAVA 308
Query: 398 SLIREAMEGEKGQEMLRRVTELRDSAVAAAGPDGRSMRNVDRLIEEVLL 252
LI E MEGEKG+ M +R E ++SAV AA P G S N L+ +VLL
Sbjct: 307 GLITEIMEGEKGKSMRKRAVEWKESAVKAAMPGGSSHINFHELVRDVLL 161
>gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0013E24f, mRNA sequence
Length = 573
Score = 163 bits (351), Expect = 1e-039
Identities = 58/90 (64%), Positives = 72/90 (80%)
Frame = -2 / +3
Query: 623 MLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWG 444
++++WCPQ VL H AVG FLTHSGWNS LES+CGGVP++ WPFFA+QQTNCRY+C EWG
Sbjct: 3 LMASWCPQQEVLNHPAVGAFLTHSGWNSALESLCGGVPVISWPFFADQQTNCRYQCNEWG 182
Query: 443 IGKEIGDDVQRGEVESLIREAMEGEKGQEM 354
+G EI +V+R V LI E MEGEKG+ +
Sbjct: 183 VGMEIDSNVRRDAVAGLITEIMEGEKGKSI 272
Score = 113 bits (242), Expect = 1e-024
Identities = 50/86 (58%), Positives = 56/86 (65%)
Frame = +1 / -3
Query: 352 SISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQIL 531
S+ PFSPSM S +S +T+ R T IS P PHS+H Y QLVC SAK GQ GTPP L
Sbjct: 274 SMLLPFSPSMISVISPATASRRTLLSISMPTPHSLHWYLQLVCWSAKNGQLITGTPPHRL 95
Query: 532 SSVEFHPECVRNTPTASCSSTAACGH 609
SS EF P CVR PTA ST+ CGH
Sbjct: 94 SSAEFQPLCVRKAPTAGWFSTSCCGH 17
>gb|BM442817.2|BM442817 EBro02_SQ001_G03_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_G03 5', mRNA sequence
Length = 419
Score = 162 bits (348), Expect = 3e-039
Identities = 63/104 (60%), Positives = 77/104 (74%)
Frame = -2 / +1
Query: 563 LTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIRE 384
LTHSGWNS LES+CGGVP++ WPFFA+QQTNCRY+C EWG+G EI +V+R V LI E
Sbjct: 1 LTHSGWNSALESLCGGVPVISWPFFADQQTNCRYQCNEWGVGMEIDSNVRRDAVAGLITE 180
Query: 383 AMEGEKGQEMLRRVTELRDSAVAAAGPDGRSMRNVDRLIEEVLL 252
MEGEKG+ M +R E ++SAV AA P G S N L+ +VLL
Sbjct: 181 IMEGEKGKSMRKRAVEWKESAVKAAMPGGSSRINFHELVRDVLL 312
>gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_B19 5', mRNA sequence
Length = 418
Score = 155 bits (332), Expect = 6e-037
Identities = 60/123 (48%), Positives = 80/123 (65%)
Frame = -2 / +3
Query: 734 LANTGYYFLWNVRPDLVKSGDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTH 555
L N+GY FLW +RPD++ + SA L AA +G++ + W PQ VL H AVG FLTH
Sbjct: 3 LVNSGYTFLWVLRPDMIGASQSAVLQEAVGAAGKGKARVVGWAPQRDVLRHRAVGCFLTH 182
Query: 554 SGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAME 375
+GWNSTLE I GVP++CWPFF +QQ N R+ WG G ++ D R VE ++R+ ME
Sbjct: 183 AGWNSTLEGIAEGVPLVCWPFFLDQQINSRFVGAVWGAGLDMKDVCDRAVVEDMVRQTME 362
Query: 374 GEK 366
E+
Sbjct: 363 SEQ 371
>emb|X15694.1|HVBRNZ1H Barley bronze 1 homologue for UDPglucose flavonol 3,0 glucosyl
transferase
Length = 2326
Score = 117 bits (251), Expect(2) = 2e-034
Identities = 47/118 (39%), Positives = 62/118 (52%)
Frame = -2 / +2
Query: 611 WCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKE 432
W PQ VL H AVG F+TH+GW S +E + GVPM C PFF +Q N R + WG G
Sbjct: 1664 WAPQVGVLRHAAVGAFVTHAGWASVMEGVSSGVPMACRPFFGDQTMNARSVASVWGFGTA 1843
Query: 431 IGDDVQRGEVESLIREAMEGEKGQEMLRRVTELRDSAVAAAGPDGRSMRNVDRLIEEV 258
+ RG V + + + GE G+ M + EL+ A PDG +N D +E V
Sbjct: 1844 FDGPMTRGAVANAVATLLRGEDGERMRAKAQELQAMVGKAFEPDGGCRKNFDEFVEIV 2017
Score = 84.0 bits (177), Expect(2) = 1e-021
Identities = 35/86 (40%), Positives = 47/86 (54%)
Frame = +1 / -2
Query: 355 ISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILS 534
I P SP + + +T+PR + P PH++ R + S KKG+H+MGTP S
Sbjct: 1920 IRSPSSPRSSVATAFATAPRVIGPSNAVPKPHTLATDRAFIVWSPKKGRHAMGTPLDTPS 1741
Query: 535 SVEFHPECVRNTPTASCSSTAACGHH 612
+ HP CV N PTA+C ST CG H
Sbjct: 1740 ITDAHPACVTNAPTAACRSTPTCGAH 1663
Score = 48.7 bits (100), Expect(2) = 2e-034
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -2 / +2
Query: 836 LRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVR 696
L WL+ R RSV YV+FG+ ++L E A GL +G FLW++R
Sbjct: 1463 LAWLDRRPARSVAYVSFGTNATARPDELQELAAGLEASGAPFLWSLR 1603
Score = 39.1 bits (79), Expect(2) = 1e-021
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1 / -2
Query: 697 RTFHRK**PVLASPHANSTSCSLDITVMLPKLTYTTERGAR 819
R+ HR P+ +SP A+S S S +PKLTY T+R R
Sbjct: 1602 RSDHRNGAPLASSPAASSCSSSGRAVAFVPKLTYATDRAGR 1480
>gb|BE214720.2|BE214720 HV_CEb0004F12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0004F12f, mRNA sequence
Length = 637
Score = 145 bits (311), Expect = 4e-034
Identities = 63/88 (71%), Positives = 69/88 (78%)
Frame = -2 / -1
Query: 509 MLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRRVTELR 330
M+CWPFFAEQQT C +CTEW IG I DV+R EV LIREAME EKG+EM RRV +LR
Sbjct: 475 MVCWPFFAEQQTTCGSRCTEWAIGMXIXXDVRRTEVRPLIREAMEEEKGREMRRRVLKLR 296
Query: 329 DSAVAAAGPDGRSMRNVDRLIEEVLLA* 246
SAVA+A P GRSM NVDRLI EVLLA*
Sbjct: 295 KSAVASARPGGRSMHNVDRLIHEVLLA* 212
>gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16h10 3', mRNA sequence
Length = 669
Score = 101 bits (216), Expect(2) = 4e-034
Identities = 42/120 (35%), Positives = 62/120 (51%)
Frame = -2 / -3
Query: 650 FSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTN 471
F EG+ ++ W PQ VL H +V F++H GWNST+E + GVP LCWP+FA+Q N
Sbjct: 394 FKRRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQFCN 215
Query: 470 CRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRRVTELRDSAVAAAGPDGRS 291
Y C WG G +I D + + I+ + G E ++ + A + +G S
Sbjct: 214 QSYICNVWGTGVKIHADERGVVTKEEIKNKVAQLLGDEGIKARAAIWKDAACTSXXEGGS 35
Score = 63.4 bits (132), Expect(2) = 4e-034
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = -2 / -3
Query: 860 LWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVR 696
LW+E A L WL+ +A SV+YV FGS TV + +E A GL TG FLW VR
Sbjct: 601 LWQEDSACLPWLDAQARGSVIYVAFGSFTVFDAARFLELADGLELTGRPFLWTVR 437
>gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3k12 3', mRNA sequence
Length = 651
Score = 100 bits (214), Expect(2) = 8e-034
Identities = 42/120 (35%), Positives = 62/120 (51%)
Frame = -2 / -1
Query: 650 FSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTN 471
F EG+ ++ W PQ VL H +V F++H GWNST+E + GVP LCWP+FA+Q N
Sbjct: 381 FKRRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQFCN 202
Query: 470 CRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRRVTELRDSAVAAAGPDGRS 291
Y C WG G +I D + + I+ + G E ++ + A + +G S
Sbjct: 201 QSYICNVWGTGVKIHADERGVVTKEEIKNKVAQLLGDEGIKARAAIWKDAACTSISEGGS 22
Score = 63.4 bits (132), Expect(2) = 8e-034
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = -2 / -1
Query: 860 LWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVR 696
LW+E A L WL+ +A SV+YV FGS TV + +E A GL TG FLW VR
Sbjct: 588 LWQEDSACLPWLDAQARGSVIYVAFGSFTVFDAARFLELADGLELTGRPFLWTVR 424
>gb|BU999969.1|BU999969 HS16J06u HS Hordeum vulgare subsp. vulgare cDNA clone HS16J06
3-PRIME, mRNA sequence
Length = 550
Score = 137 bits (294), Expect(2) = 7e-033
Identities = 51/75 (68%), Positives = 62/75 (82%)
Frame = -2 / -3
Query: 542 STLESICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKG 363
ST+E++CGGVPMLCWPFFAEQQTNCRYKC EWG+ EIGDDV+R VE I+EA+ G+KG
Sbjct: 548 STVEALCGGVPMLCWPFFAEQQTNCRYKCVEWGVAMEIGDDVRREAVEGRIKEAVAGDKG 369
Query: 362 QEMLRRVTELRDSAV 318
+EM R E R++AV
Sbjct: 368 REMRERADEWREAAV 324
Score = 104 bits (222), Expect = 8e-022
Identities = 44/63 (69%), Positives = 49/63 (77%)
Frame = +1 / +1
Query: 355 ISCPFSPSMASRMSDSTSPRCTSSPISFPMPHSVHLYRQLVCCSAKKGQHSMGTPPQILS 534
IS P SP+ AS + ST+ R TSSPIS PHS HLYRQLVCCSAKKGQHS+GTPPQ S
Sbjct: 361 ISLPLSPATASLILPSTASRRTSSPISIATPHSTHLYRQLVCCSAKKGQHSIGTPPQRAS 540
Query: 535 SVE 543
+VE
Sbjct: 541 TVE 549
Score = 23.5 bits (45), Expect(2) = 7e-033
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2 / -3
Query: 317 AAAGPDGRSMRNVDRLIEEVLLA 249
AA RS+ N+D LI VLL+
Sbjct: 332 AAVRSTARSLTNLDSLIHGVLLS 264
>gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT09K12
3-PRIME, mRNA sequence
Length = 361
Score = 137 bits (294), Expect = 1e-031
Identities = 52/83 (62%), Positives = 62/83 (74%)
Frame = -2 / -1
Query: 593 VLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQ 414
V+ H+AVG FLTH GWNS +E + GVPMLCWPFFAEQQTN RY C EWG+G E+GDDV+
Sbjct: 361 VMRHEAVGAFLTHCGWNSMMEGLGAGVPMLCWPFFAEQQTNSRYACVEWGVGMEVGDDVR 182
Query: 413 RGEVESLIREAMEGEKGQEMLRR 345
R VE+ IRE M G + +RR
Sbjct: 181 RVVVEARIREVMGGGEVGRHMRR 113
>gb|CA019620.1|CA019620 HV12J05r HV Hordeum vulgare subsp. vulgare cDNA clone HV12J05
5-PRIME, mRNA sequence
Length = 556
Score = 116 bits (247), Expect(4) = 3e-031
Identities = 45/69 (65%), Positives = 57/69 (82%)
Frame = -2 / +2
Query: 887 SPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFL 708
+P ++I +LW+EQE L WL+ + P SVVYVNFGSITVM+NEQLVEFAWGLA +G +FL
Sbjct: 314 APSSSINMSLWREQEECLPWLDDKEPDSVVYVNFGSITVMTNEQLVEFAWGLAKSGRHFL 493
Query: 707 WNVRPDLVK 681
W +RPDLV+
Sbjct: 494 WIIRPDLVR 520
Score = 92.3 bits (195), Expect(3) = 8e-022
Identities = 41/61 (67%), Positives = 45/61 (73%)
Frame = +1 / -2
Query: 682 LTRSGRTFHRK**PVLASPHANSTSCSLDITVMLPKLTYTTERGARPLSHRSGASCSFHR 861
LTRSGR RK P+LASP ANSTSCSL +TVMLPK TYTTE G+ SH +SCS HR
Sbjct: 519 LTRSGRMIQRKCLPLLASPQANSTSCSLVMTVMLPKFTYTTESGSLSSSHGRHSSCSLHR 340
Query: 862 L 864
L
Sbjct: 339 L 337
Score = 32.2 bits (64), Expect(4) = 3e-031
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2 / +2
Query: 1019 ASAVVINTFDELDATLLAAMAKL 951
ASA+++NTFD+L+ +AAM L
Sbjct: 203 ASAMIVNTFDDLEGEAVAAMEAL 271
Score = 26.7 bits (52), Expect(3) = 8e-022
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3 / -1
Query: 942 GRQELRHGSEQRRVELVEGVDD 1007
G+ E HG + +++VEGVDD
Sbjct: 280 GQAERLHGRHRLSLKVVEGVDD 215
Score = 24.9 bits (48), Expect(4) = 3e-031
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 950 LPPIYTVGPLQL 915
LP +YT+GPL L
Sbjct: 275 LPKVYTIGPLPL 310
Score = 22.6 bits (43), Expect(3) = 8e-022
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / -2
Query: 643 AENSGGSPAESPL 681
AENS GS A SPL
Sbjct: 555 AENSRGSTAVSPL 517
Score = 21.7 bits (41), Expect(4) = 3e-031
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 677 GDSAGLPPEFSA 642
GD+A LP EFSA
Sbjct: 521 GDTAVLPLEFSA 556
>gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. vulgare cDNA clone HV06B13
3-PRIME, mRNA sequence
Length = 365
Score = 135 bits (290), Expect = 3e-031
Identities = 51/82 (62%), Positives = 61/82 (74%)
Frame = -2 / -2
Query: 590 LEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQR 411
+ H+AVG FLTH GWNS +E + GVPMLCWPFFAEQQTN RY C EWG+G E+GDDV+R
Sbjct: 364 MRHEAVGAFLTHCGWNSMMEGLGAGVPMLCWPFFAEQQTNSRYACVEWGVGMEVGDDVRR 185
Query: 410 GEVESLIREAMEGEKGQEMLRR 345
VE+ IRE M G + +RR
Sbjct: 184 VVVEARIREVMGGGEVGREMRR 119
>gb|CA015702.1|CA015702 HV12J05u HV Hordeum vulgare subsp. vulgare cDNA clone HV12J05
3-PRIME, mRNA sequence
Length = 562
Score = 133 bits (286), Expect = 1e-030
Identities = 52/91 (57%), Positives = 64/91 (70%)
Frame = -2 / -2
Query: 527 ICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLR 348
+CGGVP++ WPFFA+QQTNCRY+CTEWG+G EI DV+R V LI E MEGE G+ M +
Sbjct: 561 MCGGVPIISWPFFADQQTNCRYQCTEWGVGMEIDSDVRRDAVARLITEIMEGENGKVMKK 382
Query: 347 RVTELRDSAVAAAGPDGRSMRNVDRLIEEVL 255
+ E R+ A A P G S RN D LI +VL
Sbjct: 381 KAHEWREKAAKATKPGGSSHRNFDELIRDVL 289
>gb|BF620291.2|BF620291 HVSMEc0019F18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019F18f, mRNA sequence
Length = 689
Score = 127 bits (273), Expect = 8e-029
Identities = 55/114 (48%), Positives = 69/114 (60%)
Frame = -2 / +2
Query: 887 SPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFL 708
SP AA S+L ++ + L+WL+ + SV+YV+FGS+ MS LVE AWG+A + FL
Sbjct: 320 SPAAAAESSLLRQDRSCLKWLDAQPAASVLYVSFGSLACMSARDLVETAWGIAGSRVPFL 499
Query: 707 WNVRPDLVKSGDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGW 546
W VRP LV + LP F AAT GR M+ W PQ VL H AV F TH GW
Sbjct: 500 WVVRPGLVAADGLTRLPDGFEAATSGRGMVVEWAPQEEVLPHPAVAGFWTHGGW 661
>gb|AL499707.1|AL499707 AL499707 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03A20r 3', mRNA sequence
Length = 376
Score = 126 bits (270), Expect = 2e-028
Identities = 51/86 (59%), Positives = 61/86 (70%)
Frame = -2 / -2
Query: 506 LCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRRVTELRD 327
LCWPFFAEQQTN RY C EWG+ EIG DV+R VE+ IREAM GEKG+EM RR R+
Sbjct: 372 LCWPFFAEQQTNSRYSCVEWGVXMEIGQDVRRETVEAKIREAMSGEKGKEMRRRAEXWRE 193
Query: 326 SAVAAAGPDGRSMRNVDRLIEEVLLA 249
+ V A P GRS N+ RL+ + LL+
Sbjct: 192 TGVRATRPGGRSRANLXRLVADSLLS 115
>gb|AJ462135.1|AJ462135 AJ462135 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200058E12F1, mRNA sequence
Length = 360
Score = 126 bits (270), Expect = 2e-028
Identities = 54/116 (46%), Positives = 66/116 (56%)
Frame = -2 / +2
Query: 638 TEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYK 459
T GR M+ W PQ VL H AV F TH GWNST ES+C GVPMLC P F +Q N RY
Sbjct: 2 TSGRGMVVEWAPQEEVLRHPAVAGFWTHGGWNSTTESMCEGVPMLCRPHFGDQMGNARYV 181
Query: 458 CTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRRVTELRDSAVAAAGPDGRS 291
W +G E+ ++R +VE IR + G +G EM R EL+ +A G G S
Sbjct: 182 EHVWKVGFEVAGALERLDVEKAIRRLVTGSEGAEMRARAGELKKAAKECTGEAGSS 349
>gb|BU998386.1|BU998386 HI10O06r HI Hordeum vulgare subsp. vulgare cDNA clone HI10O06
5-PRIME, mRNA sequence
Length = 635
Score = 81.3 bits (171), Expect(3) = 1e-027
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = -2 / +3
Query: 623 MLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAE 483
++ +W PQ VL H A G F+TH GWNSTLE I G+P+LCWP +AE
Sbjct: 495 VVKSWAPQVDVLRHRATGAFMTHCGWNSTLEGITAGLPLLCWPLYAE 635
Score = 56.1 bits (116), Expect(3) = 1e-027
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = -2 / +3
Query: 836 LRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVR 696
LRWL+ + +SVV+++FGS+ S++QL E A GL +G FLW VR
Sbjct: 249 LRWLDAQPDQSVVFLSFGSLGTFSSKQLEEIALGLDKSGERFLWVVR 389
Score = 24.0 bits (46), Expect(3) = 1e-027
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -2 / +3
Query: 971 LAAMAKLLPPIYTVGPL 921
L + PP+Y +GPL
Sbjct: 165 LCVTGRATPPVYCIGPL 215
>gb|BQ466592.1|BQ466592 HT02P16r HT Hordeum vulgare subsp. vulgare cDNA clone HT02P16
5-PRIME, mRNA sequence
Length = 606
Score = 77.6 bits (163), Expect(2) = 4e-027
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = -2 / +1
Query: 650 FSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFF 489
F EG+ ++ W PQ VL H ++ F++H GWNST+E + GVP LCWP+F
Sbjct: 445 FKRRVEGKGLVVGWAPQQRVLSHPSIACFVSHCGWNSTMEGLRHGVPFLCWPYF 606
Score = 64.3 bits (134), Expect(2) = 4e-027
Identities = 29/58 (50%), Positives = 36/58 (62%)
Frame = -2 / +1
Query: 860 LWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVRPDL 687
LW E+ A L WL+ +A SVVYV FGS T+ + E A GL TG FLW VRP++
Sbjct: 238 LWPEELACLPWLDAQARGSVVYVAFGSFTIFDAARFQELADGLELTGRPFLWAVRPNI 411
>gb|BF623637.2|BF623637 HVSMEa0003E04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0003E04f, mRNA sequence
Length = 485
Score = 84.0 bits (177), Expect(2) = 7e-026
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -2 / +1
Query: 623 MLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTN 471
+L W PQ +L H A+G F+TH GWNST+E IC GVPM+ WP F+EQ N
Sbjct: 310 ILRGWAPQVMILWHQAIGGFVTHCGWNSTIEGICAGVPMITWPHFSEQFVN 462
Score = 53.8 bits (111), Expect(2) = 7e-026
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = -2 / +1
Query: 890 NSPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYF 711
++ AA G+ ++ L+WL+ R P SV++V+FGS+ + +QLVE GL + F
Sbjct: 40 SNTTAARGNKASMDETQCLQWLDSRKPGSVIFVSFGSLACTTPQQLVELGLGLEASQKPF 219
Query: 710 LWNVR 696
+W ++
Sbjct: 220 IWVIK 234
>gb|BM443110.2|BM443110 EBro02_SQ002_J16_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_J16 5', mRNA sequence
Length = 427
Score = 76.7 bits (161), Expect(2) = 1e-023
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = -2 / +3
Query: 623 MLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWP 495
+L +W PQ +L H A+G F+TH GWNST+E IC GVPM+ WP
Sbjct: 297 ILRSWAPQVMILWHQAIGGFVTHCGWNSTIEGICAGVPMITWP 425
Score = 53.8 bits (111), Expect(2) = 1e-023
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = -2 / +3
Query: 890 NSPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYF 711
++ AA G+ ++ L+WL+ R P SV++V+FGS+ + +QLVE GL + F
Sbjct: 27 SNTTAARGNKASMDETQCLQWLDSRKPGSVIFVSFGSLACTTPQQLVELGLGLEASQKPF 206
Query: 710 LWNVR 696
+W ++
Sbjct: 207 IWVIK 221
>gb|CA009114.1|CA009114 HU13D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU13D11
5-PRIME, mRNA sequence
Length = 581
Score = 88.1 bits (186), Expect(2) = 3e-023
Identities = 33/62 (53%), Positives = 40/62 (64%)
Frame = -2 / +2
Query: 611 WCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKE 432
W PQ A+L H AVG F+TH GW STLES+ GVPM+ WP FAEQ N + G+G
Sbjct: 287 WAPQVAILAHPAVGGFMTHCGWGSTLESVAAGVPMVTWPLFAEQFVNEKLIVDVLGVGVS 466
Query: 431 IG 426
+G
Sbjct: 467 VG 472
Score = 40.9 bits (83), Expect(2) = 3e-023
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -2 / +2
Query: 836 LRWLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVR 696
+ WL+G+ SVVYV+FGS + QL++ L + + +W +R
Sbjct: 62 MSWLDGKKAESVVYVSFGSAGCIPPAQLMQLGMALVSCRWPVMWVMR 202
>gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001A18f, mRNA sequence
Length = 612
Score = 76.7 bits (161), Expect(2) = 5e-023
Identities = 28/44 (63%), Positives = 32/44 (72%)
Frame = -2 / +3
Query: 611 WCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQ 480
W PQ +L H AVG FLTH GWN+TLE+I GVP L WP FA+Q
Sbjct: 255 WAPQVTILSHPAVGGFLTHCGWNATLEAISHGVPALTWPNFADQ 386
Score = 51.5 bits (106), Expect(2) = 5e-023
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = -2 / +3
Query: 830 WLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVR 696
WL+ R P SV+Y++FGSI + +Q+ E A GL +G F+W ++
Sbjct: 30 WLDARPPASVLYISFGSIAKLPAKQVAELARGLEASGRPFVWAIK 164
>gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007K11f, mRNA sequence
Length = 697
Score = 88.6 bits (187), Expect(2) = 9e-023
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = -2 / +2
Query: 689 LVKSGDSAGLPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVP 510
+V+S + L E ++ +WCPQ VL H A+G F+TH GWNSTLE++ GVP
Sbjct: 167 VVRSNEEHKLSEELKEKCGKIGLIGSWCPQLEVLAHRAIGCFITHCGWNSTLEALVNGVP 346
Query: 509 MLCWPFFAEQQTNCRYKCTEWGIG 438
+ P +A+Q T +Y + WG+G
Sbjct: 347 FVGIPHWADQPTIAKYVESAWGMG 418
Score = 38.6 bits (78), Expect(2) = 9e-023
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2 / +2
Query: 830 WLNGRAPRSVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVR 696
WL + SVV V++G+++ QL E GL N+ FLW VR
Sbjct: 41 WLEIQMNSSVVLVSYGTVSNYDATQLEELGNGLCNSSKPFLWVVR 175
>gb|BQ660136.1|BQ660136 HI01C06w HI Hordeum vulgare subsp. vulgare cDNA clone HI01C06
3-PRIME, mRNA sequence
Length = 668
Score = 107 bits (228), Expect = 1e-022
Identities = 43/80 (53%), Positives = 51/80 (63%)
Frame = -2 / -3
Query: 662 LPPEFSAATEGRSMLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAE 483
LP F+AA GR ++ WC Q VL H A+G FLTH GWNS LES+ GVPMLC+P +
Sbjct: 663 LPEGFAAACAGRGLVVPWCCQVEVLAHAALGGFLTHCGWNSVLESVWAGVPMLCFPLLTD 484
Query: 482 QQTNCRYKCTEWGIGKEIGD 423
Q TN R EW +G IGD
Sbjct: 483 QFTNRRLVVREWRVGVPIGD 424
>gb|BG300446.1|BG300446 HVSMEb0017B13f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017B13f, mRNA sequence
Length = 875
Score = 84.9 bits (179), Expect(2) = 4e-022
Identities = 32/65 (49%), Positives = 42/65 (64%)
Frame = -2 / +3
Query: 623 MLSTWCPQAAVLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWG 444
++ TW PQ VL H AVG F+TH GWNS LE++ GVPML WP +AEQ+ N + E G
Sbjct: 240 VVKTWAPQRDVLAHGAVGGFVTHCGWNSVLEAVMAGVPMLAWPLYAEQRLNRVFLEKELG 419
Query: 443 IGKEI 429
+ +
Sbjct: 420 LAAAV 434
Score = 40.0 bits (81), Expect(2) = 4e-022
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = -2 / +3
Query: 806 SVVYVNFGSITVMSNEQLVEFAWGLANTGYYFLWNVR 696
SVV++ FGS+ V S Q+ E A GL +G FLW VR
Sbjct: 21 SVVFLCFGSLGVFSAAQIREIAVGLEASGNRFLWVVR 131
>emb|AJ234486.1|HVU234486 Hordeum vulgare genomic DNA fragment; clone MWG0527
Length = 580
Score = 105 bits (223), Expect = 6e-022
Identities = 41/73 (56%), Positives = 49/73 (67%)
Frame = -2 / +1
Query: 593 VLEHDAVGVFLTHSGWNSTLESICGGVPMLCWPFFAEQQTNCRYKCTEWGIGKEIGDDVQ 414
VL H AVG FLTH GWNSTLE+ GVP +CWPFFA+QQTN R+ W G ++ D
Sbjct: 16 VLRHRAVGCFLTHGGWNSTLEAAVEGVPAVCWPFFADQQTNSRFVGAVWKTGLDMKDVCD 195
Query: 413 RGEVESLIREAME 375
R VE ++RE ME
Sbjct: 196 RAVVEKMVREXME 234
>gb|CA019923.1|CA019923 HV13L17r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L17
5-PRIME, mRNA sequence
Length = 529
Score = 66.6 bits (139), Expect(3) = 2e-021
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = -2 / +2
Query: 899 VQANSPVAAIGSNLWKEQEAPLRWLNGRAPRSVVYVNFGSITVMSNEQLV 750
+Q + I ++LW+E + L WL+GR P SVVYVNFGSIT MS E+LV
Sbjct: 332 LQQEQLLPGIRASLWREDRSCLEWLDGREPGSVVYVNFGSITTMSGEELV 481
Score = 39.6 bits (80), Expect(3) = 2e-021
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -2 / +2
Query: 1040 ETEGMSQASAVVINTFDELDATLLAAMAKLLPP 942
E E +A+AV++NT DEL+ L AM +LPP
Sbjct: 197 EVERTGRAAAVIVNTLDELERPALDAMRAVLPP 295
Score = 34.1 bits (68), Expect(3) = 2e-021
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -2 / +3
Query: 746 FAWGLANTGYYFLW 705
FAWGLAN+G+ FLW
Sbjct: 486 FAWGLANSGHPFLW 527
>gb|AV934990.1|AV934990 AV934990 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2h11 3', mRNA sequence
Length = 521
Score = 93.6 bits (198), Expect(2) = 2e-021
Identities = 35/53 (66%), Positives = 40/53 (75%)
Frame = -2 / -2
Query: 503 CWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRR 345
CWPFFAEQQTN RY C EWG+G E+GDDV+RG VE+ IRE M GE +RR
Sbjct: 520 CWPFFAEQQTNARYACVEWGVGMEVGDDVRRGVVEARIREVMGGEGVGREMRR 362
Score = 29.0 bits (57), Expect(2) = 2e-021
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2 / -2
Query: 317 AAAGPDGRSMRNVDRLIEEVLLA 249
A P GRS+ N++ L+++VLLA
Sbjct: 328 ATTQPGGRSLANLESLLKDVLLA 260
>gb|AV932146.1|AV932146 AV932146 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2h11 5', mRNA sequence
Length = 507
Score = 93.6 bits (198), Expect(2) = 2e-021
Identities = 35/53 (66%), Positives = 40/53 (75%)
Frame = -2 / +2
Query: 503 CWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRR 345
CWPFFAEQQTN RY C EWG+G E+GDDV+RG VE+ IRE M GE +RR
Sbjct: 2 CWPFFAEQQTNARYACVEWGVGMEVGDDVRRGVVEARIREVMGGEGVGREMRR 160
Score = 29.0 bits (57), Expect(2) = 2e-021
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2 / +2
Query: 317 AAAGPDGRSMRNVDRLIEEVLLA 249
A P GRS+ N++ L+++VLLA
Sbjct: 194 ATTQPGGRSLANLESLLKDVLLA 262
>gb|BJ475648.1|BJ475648 BJ475648 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal29b07 3', mRNA sequence
Length = 504
Score = 93.6 bits (198), Expect(2) = 2e-021
Identities = 35/53 (66%), Positives = 40/53 (75%)
Frame = -2 / -2
Query: 503 CWPFFAEQQTNCRYKCTEWGIGKEIGDDVQRGEVESLIREAMEGEKGQEMLRR 345
CWPFFAEQQTN RY C EWG+G E+GDDV+RG VE+ IRE M GE +RR
Sbjct: 503 CWPFFAEQQTNARYACVEWGVGMEVGDDVRRGVVEARIREVMGGEGVGREMRR 345
Score = 29.0 bits (57), Expect(2) = 2e-021
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2 / -2
Query: 317 AAAGPDGRSMRNVDRLIEEVLLA 249
A P GRS+ N++ L+++VLLA
Sbjct: 311 ATTQPGGRSLANLESLLKDVLLA 243
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 539,425,303
Number of Sequences: 312970
Number of extensions: 9998885
Number of successful extensions: 145851
Number of sequences better than 1.0e-020: 68
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 12871556852
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)