TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2568371.2.1
(782 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL503953.1|AL503953 AL503953 Hordeum vulgare Barke roots... 169 1e-041
gb|BG417206.1|BG417206 HVSMEk0016L20f Hordeum vulgare testa... 169 1e-041
gb|AV911878.1|AV911878 AV911878 K. Sato unpublished cDNA li... 169 1e-041
gb|AV920631.1|AV920631 AV920631 K. Sato unpublished cDNA li... 169 1e-041
gb|BJ468052.1|BJ468052 BJ468052 K. Sato unpublished cDNA li... 169 1e-041
gb|AV915531.1|AV915531 AV915531 K. Sato unpublished cDNA li... 156 1e-037
gb|BQ762609.1|BQ762609 EBro02_SQ004_O10_R root, 3 week, hyd... 131 4e-030
gb|BG414869.2|BG414869 HVSMEk0004A12f Hordeum vulgare testa... 111 7e-024
>gb|AL503953.1|AL503953 AL503953 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03P07T 5', mRNA sequence
Length = 638
Score = 169 bits (364), Expect = 1e-041
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / +3
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 240 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 419
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 420 AVLYIN 437
Score = 154 bits (331), Expect(2) = 2e-037
Identities = 64/70 (91%), Positives = 64/70 (91%)
Frame = -3 / -2
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVH
Sbjct: 448 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVH 269
Query: 30 SPSSTLAKAT 1
SPS TLAKAT
Sbjct: 268 SPSRTLAKAT 239
Score = 23.1 bits (44), Expect(2) = 2e-037
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -1 / -1
Query: 503 RWVDQMCVGWCVCLLHSSSSTNHRASL 423
RW+ + V W C L S ++S+
Sbjct: 611 RWMHALTVEWMSCFLVSGRLVRAKSSM 531
>gb|BG417206.1|BG417206 HVSMEk0016L20f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016L20f, mRNA sequence
Length = 472
Score = 169 bits (364), Expect = 1e-041
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / +1
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 70 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 249
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 250 AVLYIN 267
Score = 154 bits (331), Expect = 5e-037
Identities = 64/70 (91%), Positives = 64/70 (91%)
Frame = -3 / -3
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVH
Sbjct: 278 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVH 99
Query: 30 SPSSTLAKAT 1
SPS TLAKAT
Sbjct: 98 SPSRTLAKAT 69
>gb|AV911878.1|AV911878 AV911878 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1o11 3', mRNA sequence
Length = 558
Score = 169 bits (364), Expect = 1e-041
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -3
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 424 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 245
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 244 AVLYIN 227
Score = 154 bits (331), Expect = 5e-037
Identities = 64/70 (91%), Positives = 64/70 (91%)
Frame = -3 / +3
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVH
Sbjct: 216 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVH 395
Query: 30 SPSSTLAKAT 1
SPS TLAKAT
Sbjct: 396 SPSRTLAKAT 425
>gb|AV920631.1|AV920631 AV920631 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14p10 3', mRNA sequence
Length = 599
Score = 169 bits (364), Expect = 1e-041
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -2
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 463 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 284
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 283 AVLYIN 266
Score = 154 bits (331), Expect = 5e-037
Identities = 64/70 (91%), Positives = 64/70 (91%)
Frame = -3 / +3
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVH
Sbjct: 255 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVH 434
Query: 30 SPSSTLAKAT 1
SPS TLAKAT
Sbjct: 435 SPSRTLAKAT 464
>gb|BJ468052.1|BJ468052 BJ468052 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30n24 3', mRNA sequence
Length = 525
Score = 169 bits (364), Expect = 1e-041
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -2
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 470 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 291
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 290 AVLYIN 273
Score = 154 bits (331), Expect = 5e-037
Identities = 64/70 (91%), Positives = 64/70 (91%)
Frame = -3 / +1
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVH
Sbjct: 262 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVH 441
Query: 30 SPSSTLAKAT 1
SPS TLAKAT
Sbjct: 442 SPSRTLAKAT 471
>gb|AV915531.1|AV915531 AV915531 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14p10 5', mRNA sequence
Length = 629
Score = 156 bits (335), Expect = 1e-037
Identities = 59/60 (98%), Positives = 60/60 (100%)
Frame = +2 / +3
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 324 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 503
Score = 133 bits (286), Expect(2) = 6e-032
Identities = 55/60 (91%), Positives = 55/60 (91%)
Frame = -3 / -2
Query: 180 VMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVHSPSSTLAKAT 1
VMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVHSPS TLAKAT
Sbjct: 502 VMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVHSPSRTLAKAT 323
Score = 23.5 bits (45), Expect(2) = 6e-032
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -3 / -1
Query: 210 MWGMLMYSTA 181
MWGMLM STA
Sbjct: 533 MWGMLM*STA 504
>gb|BQ762609.1|BQ762609 EBro02_SQ004_O10_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_O10 5', mRNA sequence
Length = 649
Score = 131 bits (281), Expect = 4e-030
Identities = 51/52 (98%), Positives = 52/52 (100%)
Frame = +2 / +1
Query: 44 LKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVITAVLYIN 199
LKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVITAVLYIN
Sbjct: 1 LKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYIN 156
Score = 122 bits (260), Expect = 3e-027
Identities = 50/55 (90%), Positives = 50/55 (90%)
Frame = -3 / -3
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATL 46
MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATL
Sbjct: 167 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATL 3
>gb|BG414869.2|BG414869 HVSMEk0004A12f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004A12f, mRNA sequence
Length = 665
Score = 111 bits (236), Expect = 7e-024
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2 / +3
Query: 71 NFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVITAVLYIN 199
NFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVITAVLYIN
Sbjct: 3 NFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYIN 131
Score = 102 bits (218), Expect = 2e-021
Identities = 42/47 (89%), Positives = 42/47 (89%)
Frame = -3 / -2
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKL 70
MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKL
Sbjct: 142 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKL 2
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 310,430,200
Number of Sequences: 312970
Number of extensions: 4115216
Number of successful extensions: 46798
Number of sequences better than 1.0e-020: 10
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 8757577712
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)