TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2568371.2.1
         (782 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AL503953.1|AL503953  AL503953 Hordeum vulgare Barke roots...   169   1e-041
gb|BG417206.1|BG417206  HVSMEk0016L20f Hordeum vulgare testa...   169   1e-041
gb|AV911878.1|AV911878  AV911878 K. Sato unpublished cDNA li...   169   1e-041
gb|AV920631.1|AV920631  AV920631 K. Sato unpublished cDNA li...   169   1e-041
gb|BJ468052.1|BJ468052  BJ468052 K. Sato unpublished cDNA li...   169   1e-041
gb|AV915531.1|AV915531  AV915531 K. Sato unpublished cDNA li...   156   1e-037
gb|BQ762609.1|BQ762609  EBro02_SQ004_O10_R root, 3 week, hyd...   131   4e-030
gb|BG414869.2|BG414869  HVSMEk0004A12f Hordeum vulgare testa...   111   7e-024
>gb|AL503953.1|AL503953 AL503953 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
           cDNA clone HW03P07T 5', mRNA sequence
          Length = 638

 Score =  169 bits (364), Expect = 1e-041
 Identities = 65/66 (98%), Positives = 66/66 (100%)
 Frame = +2 / +3

                                                                       
Query: 2   VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
           VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 240 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 419

                 
Query: 182 AVLYIN 199
           AVLYIN
Sbjct: 420 AVLYIN 437

 Score =  154 bits (331), Expect(2) = 2e-037
 Identities = 64/70 (91%), Positives = 64/70 (91%)
 Frame = -3 / -2

                                                                       
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
           MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVH
Sbjct: 448 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVH 269

                     
Query: 30  SPSSTLAKAT 1
           SPS TLAKAT
Sbjct: 268 SPSRTLAKAT 239

 Score = 23.1 bits (44), Expect(2) = 2e-037
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1 / -1

                                      
Query: 503 RWVDQMCVGWCVCLLHSSSSTNHRASL 423
           RW+  + V W  C L S      ++S+
Sbjct: 611 RWMHALTVEWMSCFLVSGRLVRAKSSM 531
>gb|BG417206.1|BG417206 HVSMEk0016L20f Hordeum vulgare testa/pericarp EST library
           HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
           clone HVSMEk0016L20f, mRNA sequence
          Length = 472

 Score =  169 bits (364), Expect = 1e-041
 Identities = 65/66 (98%), Positives = 66/66 (100%)
 Frame = +2 / +1

                                                                       
Query: 2   VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
           VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 70  VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 249

                 
Query: 182 AVLYIN 199
           AVLYIN
Sbjct: 250 AVLYIN 267

 Score =  154 bits (331), Expect = 5e-037
 Identities = 64/70 (91%), Positives = 64/70 (91%)
 Frame = -3 / -3

                                                                       
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
           MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVH
Sbjct: 278 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVH 99

                     
Query: 30  SPSSTLAKAT 1
           SPS TLAKAT
Sbjct: 98  SPSRTLAKAT 69
>gb|AV911878.1|AV911878 AV911878 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak1o11 3', mRNA sequence
          Length = 558

 Score =  169 bits (364), Expect = 1e-041
 Identities = 65/66 (98%), Positives = 66/66 (100%)
 Frame = +2 / -3

                                                                       
Query: 2   VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
           VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 424 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 245

                 
Query: 182 AVLYIN 199
           AVLYIN
Sbjct: 244 AVLYIN 227

 Score =  154 bits (331), Expect = 5e-037
 Identities = 64/70 (91%), Positives = 64/70 (91%)
 Frame = -3 / +3

                                                                       
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
           MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVH
Sbjct: 216 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVH 395

                     
Query: 30  SPSSTLAKAT 1
           SPS TLAKAT
Sbjct: 396 SPSRTLAKAT 425
>gb|AV920631.1|AV920631 AV920631 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags14p10 3', mRNA sequence
          Length = 599

 Score =  169 bits (364), Expect = 1e-041
 Identities = 65/66 (98%), Positives = 66/66 (100%)
 Frame = +2 / -2

                                                                       
Query: 2   VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
           VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 463 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 284

                 
Query: 182 AVLYIN 199
           AVLYIN
Sbjct: 283 AVLYIN 266

 Score =  154 bits (331), Expect = 5e-037
 Identities = 64/70 (91%), Positives = 64/70 (91%)
 Frame = -3 / +3

                                                                       
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
           MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVH
Sbjct: 255 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVH 434

                     
Query: 30  SPSSTLAKAT 1
           SPS TLAKAT
Sbjct: 435 SPSRTLAKAT 464
>gb|BJ468052.1|BJ468052 BJ468052 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags30n24 3', mRNA sequence
          Length = 525

 Score =  169 bits (364), Expect = 1e-041
 Identities = 65/66 (98%), Positives = 66/66 (100%)
 Frame = +2 / -2

                                                                       
Query: 2   VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
           VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 470 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 291

                 
Query: 182 AVLYIN 199
           AVLYIN
Sbjct: 290 AVLYIN 273

 Score =  154 bits (331), Expect = 5e-037
 Identities = 64/70 (91%), Positives = 64/70 (91%)
 Frame = -3 / +1

                                                                       
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
           MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVH
Sbjct: 262 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVH 441

                     
Query: 30  SPSSTLAKAT 1
           SPS TLAKAT
Sbjct: 442 SPSRTLAKAT 471
>gb|AV915531.1|AV915531 AV915531 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags14p10 5', mRNA sequence
          Length = 629

 Score =  156 bits (335), Expect = 1e-037
 Identities = 59/60 (98%), Positives = 60/60 (100%)
 Frame = +2 / +3

                                                                       
Query: 2   VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
           VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 324 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 503

 Score =  133 bits (286), Expect(2) = 6e-032
 Identities = 55/60 (91%), Positives = 55/60 (91%)
 Frame = -3 / -2

                                                                       
Query: 180 VMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVHSPSSTLAKAT 1
           VMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATLSQCVHSPS TLAKAT
Sbjct: 502 VMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVHSPSRTLAKAT 323

 Score = 23.5 bits (45), Expect(2) = 6e-032
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -3 / -1

                     
Query: 210 MWGMLMYSTA 181
           MWGMLM STA
Sbjct: 533 MWGMLM*STA 504
>gb|BQ762609.1|BQ762609 EBro02_SQ004_O10_R root, 3 week, hydroponic grown, low nitrogen, cv
           Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
           EBro02_SQ004_O10 5', mRNA sequence
          Length = 649

 Score =  131 bits (281), Expect = 4e-030
 Identities = 51/52 (98%), Positives = 52/52 (100%)
 Frame = +2 / +1

                                                               
Query: 44  LKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVITAVLYIN 199
           LKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVITAVLYIN
Sbjct: 1   LKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYIN 156

 Score =  122 bits (260), Expect = 3e-027
 Identities = 50/55 (90%), Positives = 50/55 (90%)
 Frame = -3 / -3

                                                                  
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATL 46
           MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKLKKTPPATL
Sbjct: 167 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATL 3
>gb|BG414869.2|BG414869 HVSMEk0004A12f Hordeum vulgare testa/pericarp EST library
           HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
           clone HVSMEk0004A12f, mRNA sequence
          Length = 665

 Score =  111 bits (236), Expect = 7e-024
 Identities = 42/43 (97%), Positives = 43/43 (100%)
 Frame = +2 / +3

                                                      
Query: 71  NFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVITAVLYIN 199
           NFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVITAVLYIN
Sbjct: 3   NFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYIN 131

 Score =  102 bits (218), Expect = 2e-021
 Identities = 42/47 (89%), Positives = 42/47 (89%)
 Frame = -3 / -2

                                                          
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKL 70
           MWGMLM STAVMTKV AHQTSTTTGV PC PRMPLAKG*RW STQKL
Sbjct: 142 MWGMLM*STAVMTKVNAHQTSTTTGVFPCFPRMPLAKG*RWKSTQKL 2
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 310,430,200
Number of Sequences: 312970
Number of extensions: 4115216
Number of successful extensions: 46798
Number of sequences better than 1.0e-020: 10
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 8757577712
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)