TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542512.2.1
(834 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF624750.2|BF624750 HVSMEa0017K07f Hordeum vulgare seedl... 105 2e-054
gb|BQ662325.1|BQ662325 HS01N10w HS Hordeum vulgare subsp. v... 161 4e-049
gb|AL503532.1|AL503532 AL503532 Hordeum vulgare Barke roots... 189 2e-047
gb|AL500947.1|AL500947 AL500947 Hordeum vulgare Barke roots... 107 2e-041
gb|BI948978.1|BI948978 HVSMEl0011O14f Hordeum vulgare spike... 111 4e-041
gb|CA012717.1|CA012717 HT06D18r HT Hordeum vulgare subsp. v... 163 1e-039
gb|BQ664508.1|BQ664508 HV03K07u HV Hordeum vulgare subsp. v... 149 2e-035
gb|CA000465.1|CA000465 HS08E18u HS Hordeum vulgare subsp. v... 149 2e-035
gb|BQ662532.1|BQ662532 HS02N10u HS Hordeum vulgare subsp. v... 144 4e-034
gb|AL504503.1|AL504503 AL504503 Hordeum vulgare Barke roots... 112 4e-031
gb|AL502922.1|AL502922 AL502922 Hordeum vulgare Barke roots... 131 6e-030
gb|BJ449979.1|BJ449979 BJ449979 K. Sato unpublished cDNA li... 116 2e-025
gb|BJ457397.1|BJ457397 BJ457397 K. Sato unpublished cDNA li... 116 2e-025
gb|AV919454.1|AV919454 AV919454 K. Sato unpublished cDNA li... 59 6e-023
gb|AV917230.1|AV917230 AV917230 K. Sato unpublished cDNA li... 59 6e-023
gb|BQ471267.1|BQ471267 HV01P03T HV Hordeum vulgare subsp. v... 59 6e-023
gb|BJ464883.1|BJ464883 BJ464883 K. Sato unpublished cDNA li... 59 6e-023
gb|BJ545191.1|BJ545191 BJ545191 K. Sato unpublished cDNA li... 71 9e-023
gb|AV936726.1|AV936726 AV936726 K. Sato unpublished cDNA li... 69 2e-022
gb|AV936516.1|AV936516 AV936516 K. Sato unpublished cDNA li... 69 2e-022
gb|BJ548975.1|BJ548975 BJ548975 K. Sato unpublished cDNA li... 69 2e-022
gb|AV936356.1|AV936356 AV936356 K. Sato unpublished cDNA li... 69 2e-022
gb|BJ548006.1|BJ548006 BJ548006 K. Sato unpublished cDNA li... 69 2e-022
gb|AV936349.1|AV936349 AV936349 K. Sato unpublished cDNA li... 69 2e-022
gb|BJ547960.1|BJ547960 BJ547960 K. Sato unpublished cDNA li... 69 2e-022
gb|BJ548998.1|BJ548998 BJ548998 K. Sato unpublished cDNA li... 69 2e-022
gb|BJ548386.1|BJ548386 BJ548386 K. Sato unpublished cDNA li... 69 2e-022
gb|AV935198.1|AV935198 AV935198 K. Sato unpublished cDNA li... 69 2e-022
gb|BJ466813.1|BJ466813 BJ466813 K. Sato unpublished cDNA li... 59 3e-022
gb|AV930421.1|AV930421 AV930421 K. Sato unpublished cDNA li... 69 2e-021
gb|BJ549009.1|BJ549009 BJ549009 K. Sato unpublished cDNA li... 64 4e-021
gb|BJ546501.1|BJ546501 BJ546501 K. Sato unpublished cDNA li... 67 6e-021
>gb|BF624750.2|BF624750 HVSMEa0017K07f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017K07f, mRNA sequence
Length = 763
Score = 105 bits (225), Expect(4) = 2e-054
Identities = 39/55 (70%), Positives = 47/55 (85%)
Frame = +1 / +1
Query: 163 RLITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
RL+T DDVP L YLQC+++ETLRLYP AP+LLPH+S+ADC VGGY VP GT+L V
Sbjct: 310 RLVTADDVPRLAYLQCIVSETLRLYPAAPMLLPHQSSADCKVGGYNVPSGTMLMV 474
Score = 78.0 bits (164), Expect(4) = 7e-036
Identities = 37/52 (71%), Positives = 38/52 (73%)
Frame = -2 / -3
Query: 326 TNSSVPRGTS*PPTVQSAVDSCGSSSGATGYRRSVSLMTHCR*PSPGTSSMV 171
T S VP GT *PPT+QSA D CGSS GA GY RSVSL HCR* S GTSS V
Sbjct: 473 TISIVPLGTL*PPTLQSADDWCGSSIGAAGYSRSVSLTMHCR*ASRGTSSAV 318
Score = 71.6 bits (150), Expect(4) = 2e-054
Identities = 29/53 (54%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 305 PAARCCSSHAYAIHRDPAAWXXXXXXXXXXXXXGKAEGRLMLPFGMGRRRCPG 463
P+ +AYAIHRDPAAW GKAEGR M+PFGMG RRCPG
Sbjct: 451 PSGTMLMVNAYAIHRDPAAWERPLEFVPERFEDGKAEGRFMIPFGMGLRRCPG 609
Score = 68.0 bits (142), Expect(4) = 2e-054
Identities = 30/49 (61%), Positives = 30/49 (61%)
Frame = +2 / +1
Query: 11 DTMIMALCGXLFTAGTETTSSTIEWAMSLLLNHPXXXXXXXXXXXXXVG 157
DTMI A C LF AGTETTSST EWAMSLLLNHP VG
Sbjct: 157 DTMITAPCANLFGAGTETTSSTTEWAMSLLLNHPAALRKAQAEIDVAVG 303
Score = 54.2 bits (112), Expect(4) = 7e-036
Identities = 21/44 (47%), Positives = 23/44 (52%)
Frame = -1 / -3
Query: 462 PGHLRRPIPNGSISRPSALPXXXXXXXXXXXXXXXXXXLWMAYA 331
PGH RRPIPNG ++RPSALP WMAYA
Sbjct: 608 PGHRRRPIPNGIMNRPSALPSSNRSGTNSSGRSHAAGSRWMAYA 477
Score = 50.6 bits (104), Expect(4) = 7e-036
Identities = 23/49 (46%), Positives = 26/49 (53%)
Frame = -1 / -3
Query: 156 PTXXXXXXXXXXXXXXXXXXSDMAHSIVDDVVSVPAVNKXPHSAMIMVS 10
PT +DMAHS+VDDVVSVPA NK A+IMVS
Sbjct: 302 PTATSISACAFLSAAGWFSSNDMAHSVVDDVVSVPAPNKFAQGAVIMVS 156
Score = 24.0 bits (46), Expect(4) = 2e-054
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 560 ESGGLTMPRAVP 595
+SGGLT+P+ VP
Sbjct: 715 KSGGLTIPKRVP 750
Score = 23.5 bits (45), Expect(4) = 7e-036
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -3
Query: 594 GTARGMVSPPL 562
GT GMVSPPL
Sbjct: 749 GTRLGMVSPPL 717
>gb|BQ662325.1|BQ662325 HS01N10w HS Hordeum vulgare subsp. vulgare cDNA clone HS01N10
3-PRIME, mRNA sequence
Length = 504
Score = 161 bits (346), Expect(2) = 4e-049
Identities = 62/109 (56%), Positives = 75/109 (68%)
Frame = +2 / -1
Query: 305 PAARCCSSHAYAIHRDPAAWXXXXXXXXXXXXXGKAEGRLMLPFGMGRRRCPGETLALRT 484
P+ +AYAIHRDPA W GK +G L++PFGMGRRRCPGE LAL+T
Sbjct: 450 PSGTMLIVNAYAIHRDPATWEDPTAFRPERFEDGKGDGLLLMPFGMGRRRCPGEALALQT 271
Query: 485 AGLVLATLIQCFHWDRIDGAEIDMTESGGLTMPRAVPLEATCKPREAMR 631
G+VL L+QCF WDR+DG E+DMTE G+TMP+ V LEA C+PR AMR
Sbjct: 270 VGVVLGMLVQCFDWDRVDGVEVDMTEGVGITMPKTVALEAVCRPRAAMR 124
Score = 114 bits (244), Expect(2) = 8e-033
Identities = 57/106 (53%), Positives = 59/106 (55%)
Frame = -1 / +2
Query: 648 SC*RT*RMASRGLQVASNGTARGMVSPPLSVMSISAPSILSQWKHWMSVASTRPAVRRAS 469
S *RT RMA+RGL AS T GMV P SVMS S PS SQ KH S+ T P V AS
Sbjct: 107 SL*RTSRMAARGLHTASKATVLGMVIPTPSVMSTSTPSTRSQSKHCTSIPRTTPTVCSAS 286
Query: 468 VSPGHLRRPIPNGSISRPSALPXXXXXXXXXXXXXXXXXXLWMAYA 331
SPGHLRRPIPNG S PS LP LWMAYA
Sbjct: 287 ASPGHLRRPIPNGISSSPSPLPSSNRSGRNAVGSSHVAGSLWMAYA 424
Score = 53.8 bits (111), Expect(2) = 4e-049
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +1 / -1
Query: 250 LLLPHESTADCTVGGYEVPRGTLLFV 327
LLLPHES+ADC VGGY+VP GT+L V
Sbjct: 504 LLLPHESSADCKVGGYDVPSGTMLIV 427
Score = 46.0 bits (94), Expect(2) = 8e-033
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -2 / +2
Query: 326 TNSSVPRGTS*PPTVQSAVDSCGSS 252
T S VP GTS*PPT+QSA DSCGSS
Sbjct: 428 TISMVPLGTS*PPTLQSAEDSCGSS 502
>gb|AL503532.1|AL503532 AL503532 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02H20T 5', mRNA sequence
Length = 700
Score = 189 bits (407), Expect = 2e-047
Identities = 76/111 (68%), Positives = 85/111 (76%)
Frame = +2 / -3
Query: 299 KCPAARCCSSHAYAIHRDPAAWXXXXXXXXXXXXXGKAEGRLMLPFGMGRRRCPGETLAL 478
+C AARC YAIHRDPAAW GKAEGR M+PFGMGRRRCPG TLAL
Sbjct: 578 RCRAARC*W*TRYAIHRDPAAWERPLEFVPERFEDGKAEGRFMIPFGMGRRRCPGXTLAL 399
Query: 479 RTAGLVLATLIQCFHWDRIDGAEIDMTESGGLTMPRAVPLEATCKPREAMR 631
RT G+VLATL+QCF WDR+DG E+DMTESGGLT+P+AVPLEA C+PR AMR
Sbjct: 398 RTIGMVLATLVQCFDWDRVDGKEVDMTESGGLTIPKAVPLEAVCRPRPAMR 246
Score = 144 bits (310), Expect = 4e-034
Identities = 67/112 (59%), Positives = 70/112 (62%)
Frame = -1 / +1
Query: 636 T*RMASRGLQVASNGTARGMVSPPLSVMSISAPSILSQWKHWMSVASTRPAVRRASVSPG 457
T RMA RGL AS+GTA GMVSPPLSVMS S PS SQ KH SVAST P VR ASVSPG
Sbjct: 241 TSRMAGRGLXTASSGTALGMVSPPLSVMSTSLPSTRSQSKHCTSVASTMPMVRSASVSPG 420
Query: 456 HLRRPIPNGSISRPSALPXXXXXXXXXXXXXXXXXXLWMAYACDEQQRAAGH 301
H RRPIPNG ++RPSALP WMAY Q RAA H
Sbjct: 421 HRRRPIPNGIMNRPSALPSSNRSGTNSSGRSHAAGSRWMAYRVHHQHRAARH 576
Score = 132 bits (282), Expect = 3e-030
Identities = 55/89 (61%), Positives = 67/89 (75%)
Frame = -3 / +3
Query: 661 IDQSELLKNMTHGFARLAGGLQRDGPGHGEPAALGHVDLSAIDSVPVEALDERGEHEAGG 482
I +SE L+++ HG AR A GL+R G G GEPAAL HV L A+D+VPVEAL +RG+H A G
Sbjct: 216 IIRSEALEHVAHGRARPAXGLERHGLGDGEPAALRHVHLLAVDAVPVEALHQRGQHHADG 395
Query: 481 PQSERLPGAPAPSHPERQHQPALGLAVAE 395
PQ +R PGAP +HPER H+P LGLAV E
Sbjct: 396 PQRQRXPGAPPAAHPERDHEPPLGLAVLE 482
>gb|AL500947.1|AL500947 AL500947 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02H20u 3', mRNA sequence
Length = 393
Score = 107 bits (229), Expect(3) = 2e-041
Identities = 40/56 (71%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 160 SRLITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
SRL+T DDVP L YLQC+++ETLRLYP AP+LLPH+S+ADC VGGY VP GT+L V
Sbjct: 193 SRLVTADDVPRLAYLQCIVSETLRLYPAAPMLLPHQSSADCKVGGYNVPSGTMLMV 360
Score = 78.0 bits (164), Expect(2) = 4e-023
Identities = 37/52 (71%), Positives = 38/52 (73%)
Frame = -2 / -2
Query: 326 TNSSVPRGTS*PPTVQSAVDSCGSSSGATGYRRSVSLMTHCR*PSPGTSSMV 171
T S VP GT *PPT+QSA D CGSS GA GY RSVSL HCR* S GTSS V
Sbjct: 359 TISIVPLGTL*PPTLQSADDWCGSSIGAAGYSRSVSLTMHCR*ASRGTSSAV 204
Score = 71.2 bits (149), Expect(3) = 2e-041
Identities = 31/49 (63%), Positives = 31/49 (63%)
Frame = +2 / +1
Query: 11 DTMIMALCGXLFTAGTETTSSTIEWAMSLLLNHPXXXXXXXXXXXXXVG 157
DTMI ALC LF AGTETTSST EWAMSLLLNHP VG
Sbjct: 43 DTMITALCANLFGAGTETTSSTTEWAMSLLLNHPAALRKAQAEIDVAVG 189
Score = 50.1 bits (103), Expect(2) = 4e-023
Identities = 23/49 (46%), Positives = 26/49 (53%)
Frame = -1 / -2
Query: 156 PTXXXXXXXXXXXXXXXXXXSDMAHSIVDDVVSVPAVNKXPHSAMIMVS 10
PT +DMAHS+VDDVVSVPA NK A+IMVS
Sbjct: 188 PTATSISACAFLSAAGWFSSNDMAHSVVDDVVSVPAPNKFAQRAVIMVS 42
Score = 28.6 bits (56), Expect(3) = 2e-041
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2 / +1
Query: 305 PAARCCSSHAYAIHRDPAA 361
P+ +AYAIHRDPAA
Sbjct: 337 PSGTMLMVNAYAIHRDPAA 393
>gb|BI948978.1|BI948978 HVSMEl0011O14f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0011O14f, mRNA sequence
Length = 813
Score = 111 bits (236), Expect(3) = 4e-041
Identities = 42/61 (68%), Positives = 50/61 (81%)
Frame = +1 / +1
Query: 160 SRLITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFVTRVR 339
SR++ DDVP L YLQC+INETLR+YP APLLLPHES+ADC VGGY++P GT+ RVR
Sbjct: 271 SRMVAADDVPRLSYLQCIINETLRMYPAAPLLLPHESSADCKVGGYDLPSGTMADRERVR 450
Query: 340 H 342
H
Sbjct: 451 H 453
Score = 62.5 bits (130), Expect(3) = 4e-041
Identities = 26/49 (53%), Positives = 29/49 (59%)
Frame = +2 / +1
Query: 11 DTMIMALCGXLFTAGTETTSSTIEWAMSLLLNHPXXXXXXXXXXXXXVG 157
D MI+ALC GTETTS+TIEWAMSLLLNHP +G
Sbjct: 121 DQMIIALCANRGVGGTETTSTTIEWAMSLLLNHPAALKKAQAEIDASIG 267
Score = 33.1 bits (66), Expect(3) = 4e-041
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2 / +1
Query: 404 GKAEGRLMLPFGMGRRRCPGETLALRTAGLVLAT 505
GK +G L++P G G PG LAL+ G L +
Sbjct: 514 GKGDGLLLMPVGRGGGGGPGRALALKPGGGALGS 615
>gb|CA012717.1|CA012717 HT06D18r HT Hordeum vulgare subsp. vulgare cDNA clone HT06D18
5-PRIME, mRNA sequence
Length = 564
Score = 163 bits (351), Expect = 1e-039
Identities = 62/76 (81%), Positives = 70/76 (92%)
Frame = +2 / +2
Query: 404 GKAEGRLMLPFGMGRRRCPGETLALRTAGLVLATLIQCFHWDRIDGAEIDMTESGGLTMP 583
GKAEGR M+PFGMGRRRCPGETLALRT G+VLATL+QCF WDR+DG E+DMTESGGLT+P
Sbjct: 53 GKAEGRFMIPFGMGRRRCPGETLALRTIGMVLATLVQCFDWDRVDGKEVDMTESGGLTIP 232
Query: 584 RAVPLEATCKPREAMR 631
+AVPLEA C+PR AMR
Sbjct: 233 KAVPLEAVCRPRPAMR 280
Score = 134 bits (287), Expect = 7e-031
Identities = 56/89 (62%), Positives = 68/89 (76%)
Frame = -3 / -3
Query: 661 IDQSELLKNMTHGFARLAGGLQRDGPGHGEPAALGHVDLSAIDSVPVEALDERGEHEAGG 482
I +SE L+++ HG AR A GL+R G G GEPAAL HV L A+D+VPVEAL +RG+H A G
Sbjct: 310 IIRSEALEHVAHGRARPADGLERHGLGDGEPAALRHVHLLAVDAVPVEALHQRGQHHADG 131
Query: 481 PQSERLPGAPAPSHPERQHQPALGLAVAE 395
PQ +RLPGAP +HPER H+P LGLAV E
Sbjct: 130 PQRQRLPGAPPAAHPERDHEPPLGLAVLE 44
Score = 129 bits (277), Expect = 2e-029
Identities = 59/78 (75%), Positives = 62/78 (79%)
Frame = -1 / -1
Query: 636 T*RMASRGLQVASNGTARGMVSPPLSVMSISAPSILSQWKHWMSVASTRPAVRRASVSPG 457
T RMA RGLQ AS+GTA GMVSPPLSVMS S PS SQ KH SVAST P VR ASVSPG
Sbjct: 285 TSRMAGRGLQTASSGTALGMVSPPLSVMSTSLPSTRSQSKHCTSVASTMPMVRSASVSPG 106
Query: 456 HLRRPIPNGSISRPSALP 403
H RRPIPNG ++RPSALP
Sbjct: 105 HRRRPIPNGIMNRPSALP 52
>gb|BQ664508.1|BQ664508 HV03K07u HV Hordeum vulgare subsp. vulgare cDNA clone HV03K07
3-PRIME, mRNA sequence
Length = 443
Score = 149 bits (320), Expect = 2e-035
Identities = 56/69 (81%), Positives = 64/69 (92%)
Frame = +2 / -2
Query: 425 MLPFGMGRRRCPGETLALRTAGLVLATLIQCFHWDRIDGAEIDMTESGGLTMPRAVPLEA 604
M+PFGMGRRRCPGETLALRT G+VLATL+QCF WDR+DG E+DMTESGGLT+P+AVPLEA
Sbjct: 439 MIPFGMGRRRCPGETLALRTIGMVLATLVQCFDWDRVDGKEVDMTESGGLTIPKAVPLEA 260
Query: 605 TCKPREAMR 631
C+PR AMR
Sbjct: 259 VCRPRPAMR 233
Score = 118 bits (253), Expect = 3e-026
Identities = 48/77 (62%), Positives = 59/77 (76%)
Frame = -3 / +2
Query: 652 SELLKNMTHGFARLAGGLQRDGPGHGEPAALGHVDLSAIDSVPVEALDERGEHEAGGPQS 473
SE L+++ HG AR A GL+R G G GEPAAL HV L A+D+VPVEAL +RG+H A GPQ
Sbjct: 212 SEALEHVAHGRARPADGLERHGLGDGEPAALRHVHLLAVDAVPVEALHQRGQHHADGPQR 391
Query: 472 ERLPGAPAPSHPERQHQ 422
+RLPGAP +HPER H+
Sbjct: 392 QRLPGAPPAAHPERDHE 442
Score = 115 bits (246), Expect = 3e-025
Identities = 53/69 (76%), Positives = 54/69 (78%)
Frame = -1 / +3
Query: 636 T*RMASRGLQVASNGTARGMVSPPLSVMSISAPSILSQWKHWMSVASTRPAVRRASVSPG 457
T RMA RGLQ AS+GTA GMVSPPLSVMS S PS SQ KH SVAST P VR ASVSPG
Sbjct: 228 TSRMAGRGLQTASSGTALGMVSPPLSVMSTSLPSTRSQSKHCTSVASTMPMVRSASVSPG 407
Query: 456 HLRRPIPNG 430
H RRPIPNG
Sbjct: 408 HRRRPIPNG 434
>gb|CA000465.1|CA000465 HS08E18u HS Hordeum vulgare subsp. vulgare cDNA clone HS08E18
3-PRIME, mRNA sequence
Length = 492
Score = 149 bits (320), Expect = 2e-035
Identities = 56/69 (81%), Positives = 64/69 (92%)
Frame = +2 / -1
Query: 425 MLPFGMGRRRCPGETLALRTAGLVLATLIQCFHWDRIDGAEIDMTESGGLTMPRAVPLEA 604
M+PFGMGRRRCPGETLALRT G+VLATL+QCF WDR+DG E+DMTESGGLT+P+AVPLEA
Sbjct: 492 MIPFGMGRRRCPGETLALRTIGMVLATLVQCFDWDRVDGKEVDMTESGGLTIPKAVPLEA 313
Query: 605 TCKPREAMR 631
C+PR AMR
Sbjct: 312 VCRPRPAMR 286
Score = 118 bits (253), Expect = 3e-026
Identities = 49/79 (62%), Positives = 60/79 (75%)
Frame = -3 / +1
Query: 661 IDQSELLKNMTHGFARLAGGLQRDGPGHGEPAALGHVDLSAIDSVPVEALDERGEHEAGG 482
I +SE L+++ HG AR A GL+R G G GEPAAL HV L A+D+VPVEAL +RG+H A G
Sbjct: 256 IIRSEALEHVAHGRARPADGLERHGLGDGEPAALRHVHLLAVDAVPVEALHQRGQHHADG 435
Query: 481 PQSERLPGAPAPSHPERQH 425
PQ +RLPGAP +HPER H
Sbjct: 436 PQRQRLPGAPPAAHPERDH 492
Score = 115 bits (246), Expect = 3e-025
Identities = 53/69 (76%), Positives = 54/69 (78%)
Frame = -1 / +2
Query: 636 T*RMASRGLQVASNGTARGMVSPPLSVMSISAPSILSQWKHWMSVASTRPAVRRASVSPG 457
T RMA RGLQ AS+GTA GMVSPPLSVMS S PS SQ KH SVAST P VR ASVSPG
Sbjct: 281 TSRMAGRGLQTASSGTALGMVSPPLSVMSTSLPSTRSQSKHCTSVASTMPMVRSASVSPG 460
Query: 456 HLRRPIPNG 430
H RRPIPNG
Sbjct: 461 HRRRPIPNG 487
>gb|BQ662532.1|BQ662532 HS02N10u HS Hordeum vulgare subsp. vulgare cDNA clone HS02N10
3-PRIME, mRNA sequence
Length = 448
Score = 144 bits (310), Expect = 4e-034
Identities = 55/93 (59%), Positives = 66/93 (70%)
Frame = +2 / -3
Query: 353 PAAWXXXXXXXXXXXXXGKAEGRLMLPFGMGRRRCPGETLALRTAGLVLATLIQCFHWDR 532
PA W GK +G L++PFGMGRRRCPGE LAL+T G+VL L+QCF WDR
Sbjct: 446 PATWEDPTAFRPERFEDGKGDGLLLIPFGMGRRRCPGEALALQTVGVVLGMLVQCFDWDR 267
Query: 533 IDGAEIDMTESGGLTMPRAVPLEATCKPREAMR 631
+DG E+DMTE G+TMP+AV LEA C+PR AMR
Sbjct: 266 VDGVEVDMTEGVGITMPKAVALEAVCRPRAAMR 168
Score = 107 bits (228), Expect = 9e-023
Identities = 52/82 (63%), Positives = 54/82 (65%)
Frame = -1 / +1
Query: 648 SC*RT*RMASRGLQVASNGTARGMVSPPLSVMSISAPSILSQWKHWMSVASTRPAVRRAS 469
S *RT RMA+RGL AS TA GMV P SVMS S PS SQ KH S+ T P V AS
Sbjct: 151 SL*RTSRMAARGLHTASKATALGMVIPTPSVMSTSTPSTRSQSKHCTSIPRTTPTVCSAS 330
Query: 468 VSPGHLRRPIPNGSISRPSALP 403
SPGHLRRPIPNG S PS LP
Sbjct: 331 ASPGHLRRPIPNGISSSPSPLP 396
>gb|AL504503.1|AL504503 AL504503 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05H19V 5', mRNA sequence
Length = 700
Score = 112 bits (240), Expect(2) = 4e-031
Identities = 44/66 (66%), Positives = 49/66 (74%)
Frame = +2 / +2
Query: 425 MLPFGMGRRRCPGETLALRTAGLVLATLIQCFHWDRIDGAEIDMTESGGLTMPRAVPLEA 604
MLPFG+GRRRCPGE LA+R GL LATL+QCF WD G IDM E GL+MP A PL A
Sbjct: 179 MLPFGLGRRRCPGEGLAMRLVGLTLATLVQCFEWDVGQGDTIDMAEGAGLSMPMATPLAA 358
Query: 605 TCKPRE 622
C+PRE
Sbjct: 359 ICRPRE 376
Score = 41.8 bits (85), Expect(2) = 4e-031
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1 / +2
Query: 247 PLLLPHESTADCTVGGYEVPRGTLLFV 327
P++ HE+ DCTVGG+ V RGT++ V
Sbjct: 2 PIIPAHEAMEDCTVGGFRVQRGTMILV 82
>gb|AL502922.1|AL502922 AL502922 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09C15u 3', mRNA sequence
Length = 421
Score = 131 bits (280), Expect = 6e-030
Identities = 49/64 (76%), Positives = 57/64 (89%)
Frame = +2 / -2
Query: 440 MGRRRCPGETLALRTAGLVLATLIQCFHWDRIDGAEIDMTESGGLTMPRAVPLEATCKPR 619
M RRRCPGETLALR +G+VLATL+QCF WDR+DG E+DMTE GGLT+P+AVPLEA C+PR
Sbjct: 420 MDRRRCPGETLALRXSGMVLATLVQCFDWDRVDGKEVDMTEXGGLTIPKAVPLEAVCRPR 241
Query: 620 EAMR 631
AMR
Sbjct: 240 PAMR 229
>gb|BJ449979.1|BJ449979 BJ449979 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27i06 5', mRNA sequence
Length = 537
Score = 116 bits (247), Expect = 2e-025
Identities = 45/69 (65%), Positives = 51/69 (73%)
Frame = +2 / +2
Query: 425 MLPFGMGRRRCPGETLALRTAGLVLATLIQCFHWDRIDGAEIDMTESGGLTMPRAVPLEA 604
MLPFG+GRRRCPGE LA+R L LA L+QCF WD DG IDM E GGLTMP A PL A
Sbjct: 128 MLPFGLGRRRCPGEGLAMRVVSLTLAALLQCFEWDVGDGDTIDMAEGGGLTMPMATPLAA 307
Query: 605 TCKPREAMR 631
C+PRE ++
Sbjct: 308 VCRPREFVK 334
>gb|BJ457397.1|BJ457397 BJ457397 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27i06 3', mRNA sequence
Length = 498
Score = 116 bits (247), Expect = 2e-025
Identities = 45/69 (65%), Positives = 51/69 (73%)
Frame = +2 / -1
Query: 425 MLPFGMGRRRCPGETLALRTAGLVLATLIQCFHWDRIDGAEIDMTESGGLTMPRAVPLEA 604
MLPFG+GRRRCPGE LA+R L LA L+QCF WD DG IDM E GGLTMP A PL A
Sbjct: 381 MLPFGLGRRRCPGEGLAMRVVSLTLAALLQCFEWDVGDGDTIDMAEGGGLTMPMATPLAA 202
Query: 605 TCKPREAMR 631
C+PRE ++
Sbjct: 201 VCRPREFVK 175
>gb|AV919454.1|AV919454 AV919454 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b21 3', mRNA sequence
Length = 712
Score = 59.3 bits (123), Expect(4) = 6e-023
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +1 / -1
Query: 169 ITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+ + D+P L YL+ V++ET R++P A +L+P E+ +GGY++P T+L V
Sbjct: 577 VRISDMPKLKYLRMVLSETFRMHPPATMLVPRETMRPIRLGGYDIPANTMLMV 419
Score = 48.3 bits (99), Expect(4) = 6e-023
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2 / -1
Query: 425 MLPFGMGRRRCPGETLALRTAGLVLATLIQCFHW 526
+LPFG GRR CPG + + +LA L+ CF+W
Sbjct: 310 LLPFGAGRRICPGLAMGVANTEFILANLLYCFNW 209
Score = 28.6 bits (56), Expect(4) = 6e-023
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2 / -1
Query: 44 FTAGTETTSSTIEWAMSLLLNHP 112
F A T+T+S + W M+ L+ HP
Sbjct: 703 FMAATDTSSISSYWVMTELIRHP 635
Score = 25.8 bits (50), Expect(4) = 6e-023
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDPA+W
Sbjct: 442 PANTMLMVNAWAIGRDPASW 383
>gb|AV917230.1|AV917230 AV917230 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18a18 5', mRNA sequence
Length = 619
Score = 59.3 bits (123), Expect(4) = 6e-023
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +1 / +3
Query: 169 ITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+ + D+P L YL+ V++ET R++P A +L+P E+ +GGY++P T+L V
Sbjct: 141 VRISDMPKLKYLRMVLSETFRMHPPATMLVPRETMRPIRLGGYDIPANTMLMV 299
Score = 48.3 bits (99), Expect(4) = 6e-023
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2 / +3
Query: 425 MLPFGMGRRRCPGETLALRTAGLVLATLIQCFHW 526
+LPFG GRR CPG + + +LA L+ CF+W
Sbjct: 408 LLPFGAGRRICPGLAMGVANTEFILANLLYCFNW 509
Score = 28.6 bits (56), Expect(4) = 6e-023
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2 / +3
Query: 44 FTAGTETTSSTIEWAMSLLLNHP 112
F A T+T+S + W M+ L+ HP
Sbjct: 15 FMAATDTSSISSYWVMTELIRHP 83
Score = 25.8 bits (50), Expect(4) = 6e-023
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / +3
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDPA+W
Sbjct: 276 PANTMLMVNAWAIGRDPASW 335
>gb|BQ471267.1|BQ471267 HV01P03T HV Hordeum vulgare subsp. vulgare cDNA clone HV01P03
5-PRIME, mRNA sequence
Length = 610
Score = 59.3 bits (123), Expect(4) = 6e-023
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +1 / +2
Query: 169 ITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+ + D+P L YL+ V++ET R++P A +L+P E+ +GGY++P T+L V
Sbjct: 170 VRISDMPKLKYLRMVLSETFRMHPPATMLVPRETMRPIRLGGYDIPANTMLMV 328
Score = 48.3 bits (99), Expect(4) = 6e-023
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2 / +2
Query: 425 MLPFGMGRRRCPGETLALRTAGLVLATLIQCFHW 526
+LPFG GRR CPG + + +LA L+ CF+W
Sbjct: 437 LLPFGAGRRICPGLAMGVANTEFILANLLYCFNW 538
Score = 28.6 bits (56), Expect(4) = 6e-023
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2 / +2
Query: 44 FTAGTETTSSTIEWAMSLLLNHP 112
F A T+T+S + W M+ L+ HP
Sbjct: 44 FMAATDTSSISSYWVMTELIRHP 112
Score = 25.8 bits (50), Expect(4) = 6e-023
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / +2
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDPA+W
Sbjct: 305 PANTMLMVNAWAIGRDPASW 364
>gb|BJ464883.1|BJ464883 BJ464883 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36h03 5', mRNA sequence
Length = 582
Score = 59.3 bits (123), Expect(4) = 6e-023
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +1 / +3
Query: 169 ITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+ + D+P L YL+ V++ET R++P A +L+P E+ +GGY++P T+L V
Sbjct: 141 VRISDMPKLKYLRMVLSETFRMHPPATMLVPRETMRPIRLGGYDIPANTMLMV 299
Score = 48.3 bits (99), Expect(4) = 6e-023
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2 / +3
Query: 425 MLPFGMGRRRCPGETLALRTAGLVLATLIQCFHW 526
+LPFG GRR CPG + + +LA L+ CF+W
Sbjct: 408 LLPFGAGRRICPGLAMGVANTEFILANLLYCFNW 509
Score = 28.6 bits (56), Expect(4) = 6e-023
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2 / +3
Query: 44 FTAGTETTSSTIEWAMSLLLNHP 112
F A T+T+S + W M+ L+ HP
Sbjct: 15 FMAATDTSSISSYWVMTELIRHP 83
Score = 25.8 bits (50), Expect(4) = 6e-023
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / +3
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDPA+W
Sbjct: 276 PANTMLMVNAWAIGRDPASW 335
>gb|BJ545191.1|BJ545191 BJ545191 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45m01 5', mRNA sequence
Length = 603
Score = 70.7 bits (148), Expect(3) = 9e-023
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +1 / +3
Query: 169 ITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+T DD+ L YL+ VI ET+RL+P APLLLP E+ C + GY++P GT + V
Sbjct: 285 VTEDDLANLKYLRLVIKETMRLHPAAPLLLPREAMEACKILGYDIPEGTTVLV 443
Score = 41.4 bits (84), Expect(3) = 9e-023
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +2 / +3
Query: 17 MIMALCGXLFTAGTETTSSTIEWAMSLLLNHP 112
MI A+ LF AG+ET+++T++WAMS L+ +P
Sbjct: 132 MIKAVILDLFGAGSETSATTLQWAMSELMRYP 227
Score = 32.2 bits (64), Expect(3) = 9e-023
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +3
Query: 428 LPFGMGRRRCPGETLA 475
+PFG GRR CPG T A
Sbjct: 555 IPFGAGRRMCPGMTFA 602
>gb|AV936726.1|AV936726 AV936726 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal5k12 3', mRNA sequence
Length = 774
Score = 68.9 bits (144), Expect(4) = 2e-022
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -3
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 598 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 437
Score = 45.1 bits (92), Expect(4) = 2e-022
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -3
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 313 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 212
Score = 24.0 bits (46), Expect(4) = 2e-022
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -3
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 460 PAGTRVVVNAWAIGRDPSSW 401
Score = 22.6 bits (43), Expect(4) = 2e-022
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -3
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 187 DIDMTEVFGLTVRRKEKLLLVPKSR 113
>gb|AV936516.1|AV936516 AV936516 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11k15 3', mRNA sequence
Length = 707
Score = 68.9 bits (144), Expect(4) = 2e-022
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -2
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 589 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 428
Score = 45.1 bits (92), Expect(4) = 2e-022
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -2
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 304 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 203
Score = 24.0 bits (46), Expect(4) = 2e-022
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -2
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 451 PAGTRVVVNAWAIGRDPSSW 392
Score = 22.6 bits (43), Expect(4) = 2e-022
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -2
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 178 DIDMTEVFGLTVRRKEKLLLVPKSR 104
>gb|BJ548975.1|BJ548975 BJ548975 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40l11 3', mRNA sequence
Length = 696
Score = 68.9 bits (144), Expect(4) = 2e-022
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -1
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 582 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 421
Score = 45.1 bits (92), Expect(4) = 2e-022
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -1
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 297 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 196
Score = 24.0 bits (46), Expect(4) = 2e-022
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 444 PAGTRVVVNAWAIGRDPSSW 385
Score = 22.6 bits (43), Expect(4) = 2e-022
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -1
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 171 DIDMTEVFGLTVRRKEKLLLVPKSR 97
>gb|AV936356.1|AV936356 AV936356 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11a15 3', mRNA sequence
Length = 683
Score = 68.9 bits (144), Expect(4) = 2e-022
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -2
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 568 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 407
Score = 45.1 bits (92), Expect(4) = 2e-022
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -2
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 283 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 182
Score = 24.0 bits (46), Expect(4) = 2e-022
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -2
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 430 PAGTRVVVNAWAIGRDPSSW 371
Score = 22.6 bits (43), Expect(4) = 2e-022
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -2
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 157 DIDMTEVFGLTVRRKEKLLLVPKSR 83
>gb|BJ548006.1|BJ548006 BJ548006 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15n22 3', mRNA sequence
Length = 684
Score = 68.9 bits (144), Expect(4) = 2e-022
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -3
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 568 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 407
Score = 45.1 bits (92), Expect(4) = 2e-022
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -3
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 283 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 182
Score = 24.0 bits (46), Expect(4) = 2e-022
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -3
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 430 PAGTRVVVNAWAIGRDPSSW 371
Score = 22.6 bits (43), Expect(4) = 2e-022
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -3
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 157 DIDMTEVFGLTVRRKEKLLLVPKSR 83
>gb|AV936349.1|AV936349 AV936349 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11a04 3', mRNA sequence
Length = 668
Score = 68.9 bits (144), Expect(4) = 2e-022
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -1
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 590 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 429
Score = 45.1 bits (92), Expect(4) = 2e-022
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -1
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 305 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 204
Score = 24.0 bits (46), Expect(4) = 2e-022
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 452 PAGTRVVVNAWAIGRDPSSW 393
Score = 22.6 bits (43), Expect(4) = 2e-022
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -1
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 179 DIDMTEVFGLTVRRKEKLLLVPKSR 105
>gb|BJ547960.1|BJ547960 BJ547960 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12i23 3', mRNA sequence
Length = 669
Score = 68.9 bits (144), Expect(4) = 2e-022
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -3
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 595 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 434
Score = 45.1 bits (92), Expect(4) = 2e-022
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -3
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 310 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 209
Score = 24.0 bits (46), Expect(4) = 2e-022
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -3
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 457 PAGTRVVVNAWAIGRDPSSW 398
Score = 22.6 bits (43), Expect(4) = 2e-022
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -3
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 184 DIDMTEVFGLTVRRKEKLLLVPKSR 110
>gb|BJ548998.1|BJ548998 BJ548998 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal16j19 3', mRNA sequence
Length = 669
Score = 68.9 bits (144), Expect(4) = 2e-022
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -2
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 590 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 429
Score = 45.1 bits (92), Expect(4) = 2e-022
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -2
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 305 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 204
Score = 24.0 bits (46), Expect(4) = 2e-022
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -2
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 452 PAGTRVVVNAWAIGRDPSSW 393
Score = 22.6 bits (43), Expect(4) = 2e-022
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -2
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 179 DIDMTEVFGLTVRRKEKLLLVPKSR 105
>gb|BJ548386.1|BJ548386 BJ548386 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal24a03 3', mRNA sequence
Length = 645
Score = 68.9 bits (144), Expect(4) = 2e-022
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -2
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 569 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 408
Score = 45.1 bits (92), Expect(4) = 2e-022
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -2
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 284 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 183
Score = 24.0 bits (46), Expect(4) = 2e-022
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -2
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 431 PAGTRVVVNAWAIGRDPSSW 372
Score = 22.6 bits (43), Expect(4) = 2e-022
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -2
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 158 DIDMTEVFGLTVRRKEKLLLVPKSR 84
>gb|AV935198.1|AV935198 AV935198 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3e02 3', mRNA sequence
Length = 597
Score = 68.9 bits (144), Expect(4) = 2e-022
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -3
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 589 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 428
Score = 45.1 bits (92), Expect(4) = 2e-022
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -3
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 304 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 203
Score = 24.0 bits (46), Expect(4) = 2e-022
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -3
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 451 PAGTRVVVNAWAIGRDPSSW 392
Score = 22.6 bits (43), Expect(4) = 2e-022
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -3
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 178 DIDMTEVFGLTVRRKEKLLLVPKSR 104
>gb|BJ466813.1|BJ466813 BJ466813 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34b17 3', mRNA sequence
Length = 729
Score = 59.3 bits (123), Expect(4) = 3e-022
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +1 / -1
Query: 169 ITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+ + D+P L YL+ V++ET R++P A +L+P E+ +GGY++P T+L V
Sbjct: 606 VRISDMPKLKYLRMVLSETFRMHPPATMLVPRETMRPIRLGGYDIPANTMLMV 448
Score = 48.3 bits (99), Expect(4) = 3e-022
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2 / -1
Query: 425 MLPFGMGRRRCPGETLALRTAGLVLATLIQCFHW 526
+LPFG GRR CPG + + +LA L+ CF+W
Sbjct: 339 LLPFGAGRRICPGLAMGVANTEFILANLLYCFNW 238
Score = 26.3 bits (51), Expect(4) = 3e-022
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2 / -1
Query: 50 AGTETTSSTIEWAMSLLLNHP 112
A T+T+S + W M+ L+ HP
Sbjct: 726 AATDTSSISSYWVMTELIRHP 664
Score = 25.8 bits (50), Expect(4) = 3e-022
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDPA+W
Sbjct: 471 PANTMLMVNAWAIGRDPASW 412
>gb|AV930421.1|AV930421 AV930421 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22h15 3', mRNA sequence
Length = 640
Score = 68.9 bits (144), Expect(4) = 2e-021
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1 / -1
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL+PVAPLL PH + ADC + GY VP GT + V
Sbjct: 502 IISETDMNNMTYLRAVIKESLRLHPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 341
Score = 45.1 bits (92), Expect(4) = 2e-021
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -1
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 217 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 116
Score = 24.0 bits (46), Expect(4) = 2e-021
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 364 PAGTRVVVNAWAIGRDPSSW 305
Score = 21.7 bits (41), Expect(4) = 2e-021
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2 / -1
Query: 545 EIDMTESGGLTMPR 586
+IDMTE GLT+ R
Sbjct: 91 DIDMTEVFGLTVRR 50
>gb|BJ549009.1|BJ549009 BJ549009 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal38d04 3', mRNA sequence
Length = 552
Score = 63.8 bits (133), Expect(4) = 4e-021
Identities = 26/45 (57%), Positives = 32/45 (71%)
Frame = +1 / -1
Query: 193 LGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+ YL+ VI E+LRL+PVAPLL PH ADC + GY VP GT + V
Sbjct: 546 MXYLRXVIKESLRLHPVAPLLAPHLXMADCIIDGYIVPAGTRVVV 412
Score = 45.1 bits (92), Expect(4) = 4e-021
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -1
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 288 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 187
Score = 24.0 bits (46), Expect(4) = 4e-021
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 435 PAGTRVVVNAWAIGRDPSSW 376
Score = 22.6 bits (43), Expect(4) = 4e-021
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2 / -1
Query: 545 EIDMTESGGLTMPRAVPLEATCKPR 619
+IDMTE GLT+ R L K R
Sbjct: 162 DIDMTEVFGLTVRRKEKLLLVPKSR 88
>gb|BJ546501.1|BJ546501 BJ546501 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42e08 3', mRNA sequence
Length = 594
Score = 67.0 bits (140), Expect(4) = 6e-021
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +1 / -1
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
+I+ D+ + YL+ VI E+LRL PVAPLL PH + ADC + GY VP GT + V
Sbjct: 516 IISETDMNNMTYLRAVIKESLRLRPVAPLLAPHLAMADCIIDGYIVPAGTRVVV 355
Score = 45.1 bits (92), Expect(4) = 6e-021
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2 / -1
Query: 428 LPFGMGRRRCPGETLALRTAGLVLATLIQCFHWD 529
LPFG GRR CPG L + L+LA L+ F W+
Sbjct: 231 LPFGAGRRMCPGMNLGIANVELMLANLVCHFDWE 130
Score = 24.0 bits (46), Expect(4) = 6e-021
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 305 PAARCCSSHAYAIHRDPAAW 364
PA +A+AI RDP++W
Sbjct: 378 PAGTRVVVNAWAIGRDPSSW 319
Score = 21.7 bits (41), Expect(4) = 6e-021
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2 / -1
Query: 545 EIDMTESGGLTMPR 586
+IDMTE GLT+ R
Sbjct: 105 DIDMTEVFGLTVRR 64
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 355,699,655
Number of Sequences: 312970
Number of extensions: 5284628
Number of successful extensions: 94364
Number of sequences better than 1.0e-020: 50
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9473341275
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)