TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.2
(850 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV912784.1|AV912784 AV912784 K. Sato unpublished cDNA li... 138 2e-053
gb|AV915960.1|AV915960 AV915960 K. Sato unpublished cDNA li... 195 2e-049
gb|AV917519.1|AV917519 AV917519 K. Sato unpublished cDNA li... 139 2e-048
gb|BU995988.1|BU995988 HM12A03r HM Hordeum vulgare subsp. v... 80 2e-030
gb|BG309831.1|BG309831 HVSMEc0013A09f Hordeum vulgare seedl... 116 2e-025
gb|BG415849.1|BG415849 HVSMEk0008C14f Hordeum vulgare testa... 90 6e-022
>gb|AV912784.1|AV912784 AV912784 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10e01 5', mRNA sequence
Length = 543
Score = 138 bits (297), Expect(3) = 2e-053
Identities = 61/96 (63%), Positives = 64/96 (66%)
Frame = -1 / +3
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A SINI WKMYFD +P SDGN+GSSAL TCLQ S+RI YG
Sbjct: 99 YPTVLHPIADSININKEIWKMYFDEVIPRLVKEGSDGNSGSSALCDTTCLQALSKRIHYG 278
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTV 524
KF AKFQESPEAYTPAI AQD DQLM LLT TV
Sbjct: 279 KFVAEAKFQESPEAYTPAIKAQDGDQLMQLLTYETV 386
Score = 109 bits (233), Expect(3) = 4e-038
Identities = 56/96 (58%), Positives = 59/96 (61%)
Frame = +3 / -3
Query: 525 TVXYVRRFMS*SRSWAIMAGV*ASGDS*NLAXXXNFPXXILLXXXCKQVXSQRALDPALP 704
TV VR +S*S S A +AGV*ASGDS*NLA NFP ILL CKQV SQRALDP P
Sbjct: 385 TVS*VRSCIS*SPS*AFIAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPEFP 206
Query: 705 SLXXXXXXGRXXSKYIFQXXXXILIXSAXGCXXXXY 812
SL G SKYIFQ IL+ SA GC Y
Sbjct: 205 SLPSFTNLGITSSKYIFQISLLILMESAIGCRTVGY 98
Score = 90.9 bits (192), Expect(3) = 4e-029
Identities = 44/85 (51%), Positives = 47/85 (55%)
Frame = +1 / -1
Query: 553 VDHGLGLLWLACKLQGTLETWXXXXTSHXXSFWXXPASRXXXKEHWIQHYHHXXXXXXXE 732
VDH LL CKLQGTLETW TSH F PASR KEHWIQ++HH E
Sbjct: 357 VDHRPELLLQVCKLQGTLETWPLPQTSHSGFF*RVPASRSCHKEHWIQNFHHFLLSPTLE 178
Query: 733 XXHQNTFSKXXXXY**XQXWDAXXL 807
HQ+TFSK Y* Q DA L
Sbjct: 177 *LHQSTFSKSLC*Y*WNQQ*DAEPL 103
Score = 79.4 bits (167), Expect(3) = 3e-026
Identities = 40/74 (54%), Positives = 43/74 (58%)
Frame = -2 / +1
Query: 774 ISXXXFGKCILMXXFXXXXXXXVMVMLDPVLFXXXPACRXXPEGSXMGSXXXXPSFKSPL 595
IS FGKC LM F VM +LDPVLF PACR + S MGS PSFKSPL
Sbjct: 136 ISTKRFGKCTLMKLFQGW*KKEVMEILDPVLFVTRPACRHSLKESTMGSLWQRPSFKSPL 315
Query: 594 KLTRQP**PKTVIN 553
KLT * +TVIN
Sbjct: 316 KLTHLQ*KLRTVIN 357
Score = 74.8 bits (157), Expect(3) = 4e-022
Identities = 42/96 (43%), Positives = 50/96 (52%)
Frame = -3 / +2
Query: 812 IXXXXASXX*XYQYXXXXLENVF*XXSSXXXXXXX*W*CWIQCSLXXNLLAGXXQKDXXW 633
+ AS * + Y LENV * S *W WIQCSL +LLAG K+ W
Sbjct: 98 VSNGSASYC*FH*YQQRDLENVL**SYSKVGERRK*WKFWIQCSL*HDLLAGTL*KNPLW 277
Query: 632 EVXXXXQVSRVP*SLHASHNSPRP*STHEPSHIXNG 525
EV QVSRVP*SLH + S *ST+ H+ +G
Sbjct: 278 EVCGRGQVSRVP*SLHTCNKSSGR*STNAAPHLRDG 385
Score = 60.2 bits (125), Expect(3) = 2e-053
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = -1 / +1
Query: 523 ERAVEHRVEAKAKIFGQEVNIGAKDKGSPPV 431
ERA+EHRVE KAKIFGQEVNIGA+ KG P V
Sbjct: 388 ERAIEHRVETKAKIFGQEVNIGAEAKGMPCV 480
Score = 49.2 bits (101), Expect(3) = 2e-053
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = -1 / +2
Query: 436 PVYKIRPSLVAELYSYRIMPLTK 368
PVYKIRPSLVA LYS RIMPLTK
Sbjct: 473 PVYKIRPSLVAGLYSNRIMPLTK 541
Score = 46.4 bits (95), Expect(3) = 4e-038
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = +3 / -2
Query: 456 APMFTSCPKILALASTLCSTARS 524
APMFTSCP ILAL ST CS ARS
Sbjct: 455 APMFTSCPNILALVSTRCSMARS 387
Score = 42.3 bits (86), Expect(3) = 3e-026
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = -2 / +3
Query: 429 TRSGRAWSPSCTATESCR*PR 367
TRSG AWS CTAT SCR*PR
Sbjct: 480 TRSGPAWSLDCTATGSCR*PR 542
Score = 40.5 bits (82), Expect(3) = 4e-038
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = +2 / -3
Query: 368 LG*RHDSVAVQLGDQARPDLVDR 436
LG*RHD VAVQ DQA PDLV R
Sbjct: 541 LG*RHDPVAVQSSDQAGPDLVHR 473
Score = 39.1 bits (79), Expect(3) = 4e-029
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1 / -2
Query: 367 PWLAA*FCSCTARRPSSA*SC 429
PWLAA* C CT +RP A*SC
Sbjct: 542 PWLAA*SCCCTVQRPGWA*SC 480
Score = 36.8 bits (74), Expect(3) = 4e-022
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -3 / +1
Query: 431 LQDQAELGRRAVQLQNHAANQG 366
+QDQA+ GR VQ Q+HAANQG
Sbjct: 478 VQDQAQPGRWTVQQQDHAANQG 543
Score = 35.9 bits (72), Expect(3) = 4e-029
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2 / -1
Query: 443 ALVLSTNVHLLPEDLGFGLHPVFDSTL 523
AL S+ VHLL + L G HP+FD TL
Sbjct: 468 ALGFSSYVHLLSKYLSLGFHPMFDGTL 388
Score = 34.5 bits (69), Expect(3) = 3e-026
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3 / +3
Query: 524 GACCRTQGGGQSQDLRARGEHWC*GQG 444
GAC RT GG Q D+ GEH * QG
Sbjct: 387 GACHRTSGGNQG*DIWTGGEHRS*SQG 467
Score = 30.4 bits (60), Expect(3) = 4e-022
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2 / +2
Query: 522 SVLSNTGWRPKPRSSGKR*TLVLRTRA 442
SV SN GW+P+ R +R*T L+ RA
Sbjct: 389 SVPSNIGWKPRLRYLDRR*T*ELKPRA 469
>gb|AV915960.1|AV915960 AV915960 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16n12 5', mRNA sequence
Length = 470
Score = 195 bits (421), Expect = 2e-049
Identities = 85/125 (68%), Positives = 90/125 (72%)
Frame = -1 / +3
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A SINI WKMYFD +P SDGN+GSSAL TCLQ S+RI YG
Sbjct: 81 YPTVLHPIADSININKEIWKMYFDEVIPRLVKEGSDGNSGSSALCDTTCLQALSKRIHYG 260
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNIGAK 452
KF AKFQESPEAYTPAI AQD DQLM LLT TVERA+EHRVE KAKIFGQEVNIGA+
Sbjct: 261 KFVAEAKFQESPEAYTPAIKAQDGDQLMQLLTYETVERAIEHRVETKAKIFGQEVNIGAE 440
Query: 451 DKGSP 437
KG P
Sbjct: 441 AKGMP 455
Score = 153 bits (328), Expect = 1e-036
Identities = 75/119 (63%), Positives = 78/119 (65%)
Frame = +3 / -2
Query: 456 APMFTSCPKILALASTLCSTARSTVXYVRRFMS*SRSWAIMAGV*ASGDS*NLAXXXNFP 635
APMFTSCP ILAL ST CS ARSTV VR +S*S S A +AGV*ASGDS*NLA NFP
Sbjct: 436 APMFTSCPNILALVSTRCSMARSTVS*VRSCIS*SPS*AFIAGV*ASGDS*NLASATNFP 257
Query: 636 XXILLXXXCKQVXSQRALDPALPSLXXXXXXGRXXSKYIFQXXXXILIXSAXGCXXXXY 812
ILL CKQV SQRALDP PSL G SKYIFQ IL+ SA GC Y
Sbjct: 256 *WILLESACKQVVSQRALDPEFPSLPSFTNLGITSSKYIFQISLLILMESAIGCRTVGY 80
Score = 112 bits (240), Expect = 2e-024
Identities = 59/122 (48%), Positives = 64/122 (52%)
Frame = +1 / -3
Query: 442 CPCP*HQCSPLARRSWLWPPPCVRQHAPPFXM*EGS*VDHGLGLLWLACKLQGTLETWXX 621
CP CSP + S W PP VR HA P * + VDH LL CKLQGTLETW
Sbjct: 450 CPWLQLLCSPPVQIS*PWFPPDVRWHARPSRR*GAALVDHRPELLLQVCKLQGTLETWPL 271
Query: 622 XXTSHXXSFWXXPASRXXXKEHWIQHYHHXXXXXXXEXXHQNTFSKXXXXY**XQXWDAX 801
TSH F PASR KEHWIQ++HH E HQ+TFSK Y* Q DA
Sbjct: 270 PQTSHSGFF*RVPASRSCHKEHWIQNFHHFLLSPTLE*LHQSTFSKSLC*Y*WNQQ*DAE 91
Query: 802 XL 807
L
Sbjct: 90 PL 85
Score = 107 bits (229), Expect = 7e-023
Identities = 54/118 (45%), Positives = 62/118 (52%)
Frame = +2 / -1
Query: 443 ALVLSTNVHLLPEDLGFGLHPVFDSTLHRXXCEKVHELITVLGYYGWRVSFRGLLKLGXX 622
AL S+ VHLL + L G HP+FD TL R E++H LITVL +Y VSFRGLLKLG
Sbjct: 449 ALGFSSYVHLLSKYLSLGFHPMFDGTLDRLVGEELH*LITVLSFYCRCVSFRGLLKLGLC 270
Query: 623 XKLPIXDPSGXXLQAGXXXKXXXXXXXXXXXXXXXWKXXIKIHFPXXXXDIDRXSXGM 796
KLPI D LQAG K W IK+HFP DI+ S M
Sbjct: 269 HKLPIVDSFRECLQAGRVTKSTGSRISITSFFHQPWNNFIKVHFPNLFVDINGISNRM 96
Score = 105 bits (224), Expect = 3e-022
Identities = 56/111 (50%), Positives = 65/111 (58%)
Frame = -2 / +1
Query: 774 ISXXXFGKCILMXXFXXXXXXXVMVMLDPVLFXXXPACRXXPEGSXMGSXXXXPSFKSPL 595
IS FGKC LM F VM +LDPVLF PACR + S MGS PSFKSPL
Sbjct: 118 ISTKRFGKCTLMKLFQGW*KKEVMEILDPVLFVTRPACRHSLKESTMGSLWQRPSFKSPL 297
Query: 594 KLTRQP**PKTVINS*TFSHXKRWSVLSNTGWRPKPRSSGKR*TLVLRTRA 442
KLT * +TVIN + S +R SV SN GW+P+ R +R*T L+ RA
Sbjct: 298 KLTHLQ*KLRTVIN*CSSSPTRRSSVPSNIGWKPRLRYLDRR*T*ELKPRA 450
Score = 102 bits (218), Expect = 2e-021
Identities = 56/123 (45%), Positives = 65/123 (52%)
Frame = -3 / +2
Query: 812 IXXXXASXX*XYQYXXXXLENVF*XXSSXXXXXXX*W*CWIQCSLXXNLLAGXXQKDXXW 633
+ AS * + Y LENV * S *W WIQCSL +LLAG K+ W
Sbjct: 80 VSNGSASYC*FH*YQQRDLENVL**SYSKVGERRK*WKFWIQCSL*HDLLAGTL*KNPLW 259
Query: 632 EVXXXXQVSRVP*SLHASHNSPRP*STHEPSHIXNGGACCRTQGGGQSQDLRARGEHWC* 453
EV QVSRVP*SLH + S *ST+ H+ +G AC RT GG Q D+ GEH *
Sbjct: 260 EVCGRGQVSRVP*SLHTCNKSSGR*STNAAPHLRDGRACHRTSGGNQG*DIWTGGEHRS* 439
Query: 452 GQG 444
QG
Sbjct: 440 SQG 448
>gb|AV917519.1|AV917519 AV917519 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10e01 3', mRNA sequence
Length = 706
Score = 139 bits (299), Expect(2) = 2e-048
Identities = 60/77 (77%), Positives = 63/77 (81%)
Frame = -1 / -2
Query: 667 CLQXXSRRIXYGKFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKA 488
CLQ S+RI YGKF AKFQESPEAYTPAI AQD DQLM LLT TVERA+EHRVE KA
Sbjct: 678 CLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDGDQLMQLLTYETVERAIEHRVETKA 499
Query: 487 KIFGQEVNIGAKDKGSP 437
KIFGQEVNIGA+ KG P
Sbjct: 498 KIFGQEVNIGAEAKGMP 448
Score = 101 bits (216), Expect(2) = 7e-032
Identities = 50/71 (70%), Positives = 52/71 (73%)
Frame = +3 / +2
Query: 456 APMFTSCPKILALASTLCSTARSTVXYVRRFMS*SRSWAIMAGV*ASGDS*NLAXXXNFP 635
APMFTSCP ILAL ST CS ARSTV VR +S*S S A +AGV*ASGDS*NLA NFP
Sbjct: 467 APMFTSCPNILALVSTRCSMARSTVS*VRSCIS*SPS*AFIAGV*ASGDS*NLASATNFP 646
Query: 636 XXILLXXXCKQ 668
ILL CKQ
Sbjct: 647 *WILLESACKQ 679
Score = 84.5 bits (178), Expect(2) = 3e-025
Identities = 42/75 (56%), Positives = 48/75 (64%)
Frame = +2 / +1
Query: 443 ALVLSTNVHLLPEDLGFGLHPVFDSTLHRXXCEKVHELITVLGYYGWRVSFRGLLKLGXX 622
AL S+ VHLL + L G HP+FD TL R E++H LITVL +Y VSFRGLLKLG
Sbjct: 454 ALGFSSYVHLLSKYLSLGFHPMFDGTLDRLVGEELH*LITVLSFYCRCVSFRGLLKLGLC 633
Query: 623 XKLPIXDPSGXXLQA 667
KLPI D LQA
Sbjct: 634 HKLPIVDSFRECLQA 678
Score = 76.7 bits (161), Expect(2) = 5e-026
Identities = 38/75 (50%), Positives = 44/75 (58%)
Frame = -3 / -1
Query: 668 LLAGXXQKDXXWEVXXXXQVSRVP*SLHASHNSPRP*STHEPSHIXNGGACCRTQGGGQS 489
LLAG K+ WEV QVSRVP*SLH + S *ST+ H+ +G AC RT GG Q
Sbjct: 679 LLAGTL*KNPLWEVCGRGQVSRVP*SLHTCNKSSGR*STNAAPHLRDGRACHRTSGGNQG 500
Query: 488 QDLRARGEHWC*GQG 444
D+ GEH * QG
Sbjct: 499 *DIWTGGEHRS*SQG 455
Score = 73.0 bits (153), Expect(2) = 2e-048
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = -1 / -2
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKIRPSLVA LYS RIMPLTK+V+VAYLLRRLD*
Sbjct: 450 PVYKIRPSLVAGLYSNRIMPLTKDVQVAYLLRRLD* 343
Score = 70.3 bits (147), Expect(2) = 7e-021
Identities = 37/76 (48%), Positives = 40/76 (52%)
Frame = +1 / +3
Query: 442 CPCP*HQCSPLARRSWLWPPPCVRQHAPPFXM*EGS*VDHGLGLLWLACKLQGTLETWXX 621
CP CSP + S W PP VR HA P * + VDH LL CKLQGTLETW
Sbjct: 453 CPWLQLLCSPPVQIS*PWFPPDVRWHARPSRR*GAALVDHRPELLLQVCKLQGTLETWPL 632
Query: 622 XXTSHXXSFWXXPASR 669
TSH F PAS+
Sbjct: 633 PQTSHSGFF*RVPASK 680
Score = 70.3 bits (147), Expect(2) = 7e-021
Identities = 38/75 (50%), Positives = 46/75 (61%)
Frame = -2 / -3
Query: 666 ACRXXPEGSXMGSXXXXPSFKSPLKLTRQP**PKTVINS*TFSHXKRWSVLSNTGWRPKP 487
ACR + S MGS PSFKSPLKLT * +TVIN + S +R SV SN GW+P+
Sbjct: 677 ACRHSLKESTMGSLWQRPSFKSPLKLTHLQ*KLRTVIN*CSSSPTRRSSVPSNIGWKPRL 498
Query: 486 RSSGKR*TLVLRTRA 442
R +R*T L+ RA
Sbjct: 497 RYLDRR*T*ELKPRA 453
Score = 61.1 bits (127), Expect(2) = 5e-026
Identities = 26/45 (57%), Positives = 28/45 (62%)
Frame = -2 / -3
Query: 429 TRSGRAWSPSCTATESCR*PRRLRSRTCLGGWIECVYVAVKLPDP 295
TRSG AWS CTAT SCR*PR R TC GGW E + +P P
Sbjct: 443 TRSGPAWSLDCTATGSCR*PRTSR*HTC*GGWTERSQMCSAMPAP 309
Score = 55.6 bits (115), Expect(2) = 7e-032
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = +2 / +1
Query: 329 SIQPPKQVRDLNLLG*RHDSVAVQLGDQARPDLVDRWA 442
S+QPP QV L++LG*RHD VAVQ DQA PDLV R A
Sbjct: 343 SVQPP*QVCYLDVLG*RHDPVAVQSSDQAGPDLVHRHA 456
Score = 50.6 bits (104), Expect(2) = 3e-025
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +3 / +2
Query: 330 QSSLLSKYATSTSLVSGMIL*LYSSATK 413
QSSLLSKYAT TSLVSGMIL LYS AT+
Sbjct: 344 QSSLLSKYATWTSLVSGMILLLYSPATR 427
Score = 50.1 bits (103), Expect(2) = 7e-021
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +1 / +3
Query: 328 LNPAS*ASTRPQPPWLAA*FCSCTARRPSSA*SC 429
L+PAS AS P PWLAA* C CT +RP A*SC
Sbjct: 342 LSPASLASMLPGRPWLAA*SCCCTVQRPGWA*SC 443
Score = 50.1 bits (103), Expect(2) = 7e-021
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = -3 / -1
Query: 431 LQDQAELGRRAVQLQNHAANQGG*GRVLA*EAGLS 327
+QDQA+ GR VQ Q+HAANQG G +LA EAGLS
Sbjct: 445 VQDQAQPGRWTVQQQDHAANQGRPGSILAKEAGLS 341
>gb|BU995988.1|BU995988 HM12A03r HM Hordeum vulgare subsp. vulgare cDNA clone HM12A03
5-PRIME, mRNA sequence
Length = 589
Score = 79.9 bits (168), Expect(2) = 2e-030
Identities = 34/43 (79%), Positives = 36/43 (83%)
Frame = -1 / +3
Query: 565 DRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNIGAKDKGSP 437
D DQLM LLT TVERA+EHRVE KAKIFGQEVNIGA+ KG P
Sbjct: 9 DGDQLMQLLTYETVERAIEHRVETKAKIFGQEVNIGAEAKGMP 137
Score = 73.0 bits (153), Expect(2) = 2e-030
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = -1 / +3
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKIRPSLVA LYS RIMPLTK+V+VAYLLRRLD*
Sbjct: 135 PVYKIRPSLVAGLYSNRIMPLTKDVQVAYLLRRLD* 242
>gb|BG309831.1|BG309831 HVSMEc0013A09f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0013A09f, mRNA sequence
Length = 792
Score = 116 bits (247), Expect = 2e-025
Identities = 49/117 (41%), Positives = 64/117 (54%)
Frame = -1 / +2
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A S+ + WKMYF+ LP DGN + CLQ SRRI G
Sbjct: 305 YPKVLHPFASSVCVNDAIWKMYFNELLPLFTADGDDGNYAETVALDFACLQALSRRIHCG 484
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
K+ KF+++P Y+P I A+D + LMNLLT VE V++RVE A +FGQ V +
Sbjct: 485 KYVAEVKFRDAPHDYSPPIRAKDNNALMNLLTFTGVEEKVKNRVEKTATVFGQNVTL 655
>gb|BG415849.1|BG415849 HVSMEk0008C14f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0008C14f, mRNA sequence
Length = 660
Score = 89.5 bits (189), Expect(2) = 6e-022
Identities = 40/87 (45%), Positives = 48/87 (55%)
Frame = -1 / +1
Query: 796 HPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYGKFXXX 617
HP A S+NI WKM +D +P S+GN GSSAL TCLQ + I YG
Sbjct: 307 HPIADSLNINRQIWKMSYDEVIPRLAKEGSEGNGGSSALCDTTCLQVLYKTIPYGTSAAQ 486
Query: 616 AKFQESPEAYTPAIIAQDRDQLMNLLT 536
A E P+AYTP I +D +QLM L T
Sbjct: 487 ANS*EPPDAYTPGIKPEDGEQLMQLPT 567
Score = 34.5 bits (69), Expect(2) = 6e-022
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -1 / +2
Query: 547 NLLTXXTVERAVEHRVEAKAKIFGQEVNIGA 455
N L RA++H VE +A IFGQEV I A
Sbjct: 557 NSLPNKRAHRAIKHGVEPQANIFGQEVIIRA 649
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 374,676,137
Number of Sequences: 312970
Number of extensions: 7266465
Number of successful extensions: 67399
Number of sequences better than 1.0e-020: 6
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9683859970
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)