TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493535.2.1
(580 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG417491.1|BG417491 HVSMEk0017M20f Hordeum vulgare testa... 111 7e-028
gb|BG367131.2|BG367131 HVSMEi0010M06f Hordeum vulgare 20 DA... 108 1e-027
gb|BM441819.2|BM441819 EBed07_SQ001_K08_R endosperm, 28 DPA... 102 5e-026
gb|BQ755202.1|BQ755202 EBed07_SQ001_P21_R endosperm, 28 DPA... 102 6e-026
gb|BG415395.2|BG415395 HVSMEk0006F02f Hordeum vulgare testa... 116 1e-025
gb|BF621368.2|BF621368 HVSMEa0006K17f Hordeum vulgare seedl... 116 1e-025
gb|BF255045.3|BF255045 HVSMEf0005M15f Hordeum vulgare seedl... 116 1e-025
gb|BM377151.2|BM377151 EBem05_SQ004_E10_R embryo, 14 DPA, n... 116 1e-025
gb|BM096593.2|BM096593 EBem06_SQ001_P04_R embryo, 21 DPA, n... 116 1e-025
gb|BM369646.2|BM369646 EBem07_SQ004_D12_R embryo, 28 DPA, n... 116 1e-025
gb|BM369664.2|BM369664 EBem07_SQ004_E07_R embryo, 28 DPA, n... 116 1e-025
gb|BM099214.2|BM099214 EBes01_SQ002_J02_R embryo sac, 4-6 D... 116 1e-025
gb|BI777376.2|BI777376 EBro04_SQ001_A12_R root, 3 week, sal... 116 1e-025
gb|CV060822.1|CV060822 BNEL61f11 Barley EST endosperm libra... 101 2e-025
gb|BU983109.1|BU983109 HA28J09r HA Hordeum vulgare subsp. v... 112 2e-025
gb|CV057326.1|CV057326 BNEL26e6 Barley EST endosperm librar... 101 2e-025
gb|CV057555.1|CV057555 BNEL29b5 Barley EST endosperm librar... 101 2e-025
gb|CV059057.1|CV059057 BNEL43h3 Barley EST endosperm librar... 101 2e-025
gb|BQ464026.1|BQ464026 HF01C09T HF Hordeum vulgare subsp. v... 115 3e-025
gb|BQ659635.1|BQ659635 HF01C09w HF Hordeum vulgare subsp. v... 115 3e-025
gb|BU969935.1|BU969935 HB13B13r BC Hordeum vulgare subsp. v... 115 3e-025
gb|BU984694.1|BU984694 HF04L08r HF Hordeum vulgare subsp. v... 115 3e-025
gb|BU985142.1|BU985142 HF06E05r HF Hordeum vulgare subsp. v... 115 3e-025
gb|CA011721.1|CA011721 HT03F21r HT Hordeum vulgare subsp. v... 115 3e-025
gb|BQ661645.1|BQ661645 HM04I05u HM Hordeum vulgare subsp. v... 111 2e-024
gb|BM377924.2|BM377924 EBem04_SQ004_J18_R embryo, 12 DPA, n... 111 4e-024
gb|CV063068.1|CV063068 BNEL86c5 Barley EST endosperm librar... 98 6e-023
gb|CV061340.1|CV061340 BNEL67f9 Barley EST endosperm librar... 95 4e-022
gb|BQ763071.1|BQ763071 EBro02_SQ007_H03_R root, 3 week, hyd... 101 4e-021
gb|CV054686.1|CV054686 BNEL112b8 Barley EST endosperm libra... 101 4e-021
>gb|BG417491.1|BG417491 HVSMEk0017M20f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017M20f, mRNA sequence
Length = 799
Score = 111 bits (238), Expect(2) = 7e-028
Identities = 47/59 (79%), Positives = 48/59 (81%)
Frame = +3 / -1
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSA 434
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 301 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSS 125
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2 / -2
Query: 431 CGQQQQHDEEDGREELARELH 493
CG +QQH+E+ REE A LH
Sbjct: 123 CGGEQQHEEQRRREEPA*SLH 61
>gb|BG367131.2|BG367131 HVSMEi0010M06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0010M06f, mRNA sequence
Length = 801
Score = 108 bits (231), Expect(2) = 1e-027
Identities = 46/67 (68%), Positives = 52/67 (77%)
Frame = +3 / -3
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR+PR LPPG PSV QTLAQL R QGP NLWL DWH+RASATATGP +
Sbjct: 295 QWVVQKQRRRRPRQLPPGKPSVRQTLAQLCPRTQGPLNLWLGDWHLRASATATGPPISPV 116
Query: 441 SSSMTRR 461
++S + R
Sbjct: 115 AASSSTR 95
Score = 33.6 bits (67), Expect(2) = 1e-027
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2 / -2
Query: 434 GQQQQHDEEDGREELARELH 493
G++QQH+EE G EELA LH
Sbjct: 116 GREQQHEEERGGEELA*SLH 57
>gb|BM441819.2|BM441819 EBed07_SQ001_K08_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_K08 5', mRNA sequence
Length = 390
Score = 102 bits (217), Expect(2) = 5e-026
Identities = 45/67 (67%), Positives = 51/67 (76%)
Frame = +3 / -3
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR+PR LPPG PSV QTLAQL R QGP NLWL D H+RASATATGP +
Sbjct: 286 QWVVQKQRRRRPRQLPPGKPSVRQTLAQLCPRTQGPLNLWLGDSHLRASATATGPPISPV 107
Query: 441 SSSMTRR 461
++S + R
Sbjct: 106 AASSSTR 86
Score = 34.5 bits (69), Expect(2) = 5e-026
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2 / -2
Query: 434 GQQQQHDEEDGREELARELH 493
G++QQH+EE G EELA LH
Sbjct: 107 GREQQHEEESGGEELA*SLH 48
>gb|BQ755202.1|BQ755202 EBed07_SQ001_P21_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_P21 5', mRNA sequence
Length = 410
Score = 102 bits (217), Expect(2) = 6e-026
Identities = 45/67 (67%), Positives = 51/67 (76%)
Frame = +3 / -2
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR+PR LPPG PSV QTLAQL R QGP NLWL D H+RASATATGP +
Sbjct: 295 QWVVQKQRRRRPRQLPPGKPSVRQTLAQLCPRTQGPLNLWLGDSHLRASATATGPPISPV 116
Query: 441 SSSMTRR 461
++S + R
Sbjct: 115 AASSSTR 95
Score = 34.5 bits (69), Expect(2) = 6e-026
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2 / -1
Query: 434 GQQQQHDEEDGREELARELH 493
G++QQH+EE G EELA LH
Sbjct: 116 GREQQHEEESGGEELA*SLH 57
>gb|BG415395.2|BG415395 HVSMEk0006F02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006F02f, mRNA sequence
Length = 551
Score = 116 bits (248), Expect = 1e-025
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3 / -1
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 263 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDLHVRASATITGPPSSP 84
Query: 438 SSSSMTRRTA 467
++S + R++
Sbjct: 83 VAASSSTRSS 54
>gb|BF621368.2|BF621368 HVSMEa0006K17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006K17f, mRNA sequence
Length = 831
Score = 116 bits (247), Expect = 1e-025
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3 / -2
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 305 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 126
Query: 438 SSSSMTRRTA 467
++S + R++
Sbjct: 125 VAASSSTRSS 96
>gb|BF255045.3|BF255045 HVSMEf0005M15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005M15f, mRNA sequence
Length = 539
Score = 116 bits (247), Expect = 1e-025
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3 / -1
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 233 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 54
Query: 438 SSSSMTRRTA 467
++S + R++
Sbjct: 53 VAASSSTRSS 24
>gb|BM377151.2|BM377151 EBem05_SQ004_E10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_E10 5', mRNA sequence
Length = 570
Score = 116 bits (247), Expect = 1e-025
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3 / -3
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 301 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 122
Query: 438 SSSSMTRRTA 467
++S + R++
Sbjct: 121 VAASSSTRSS 92
>gb|BM096593.2|BM096593 EBem06_SQ001_P04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ001_P04 5', mRNA sequence
Length = 471
Score = 116 bits (247), Expect = 1e-025
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3 / -2
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 302 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 123
Query: 438 SSSSMTRRTA 467
++S + R++
Sbjct: 122 VAASSSTRSS 93
>gb|BM369646.2|BM369646 EBem07_SQ004_D12_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_D12 5', mRNA sequence
Length = 451
Score = 116 bits (247), Expect = 1e-025
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3 / -3
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 302 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 123
Query: 438 SSSSMTRRTA 467
++S + R++
Sbjct: 122 VAASSSTRSS 93
>gb|BM369664.2|BM369664 EBem07_SQ004_E07_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_E07 5', mRNA sequence
Length = 427
Score = 116 bits (247), Expect = 1e-025
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3 / -3
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 302 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 123
Query: 438 SSSSMTRRTA 467
++S + R++
Sbjct: 122 VAASSSTRSS 93
>gb|BM099214.2|BM099214 EBes01_SQ002_J02_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_J02 5', mRNA sequence
Length = 548
Score = 116 bits (247), Expect = 1e-025
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3 / -2
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 295 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 116
Query: 438 SSSSMTRRTA 467
++S + R++
Sbjct: 115 VAASSSTRSS 86
>gb|BI777376.2|BI777376 EBro04_SQ001_A12_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_A12 5', mRNA sequence
Length = 471
Score = 116 bits (247), Expect = 1e-025
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3 / -2
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 302 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 123
Query: 438 SSSSMTRRTA 467
++S + R++
Sbjct: 122 VAASSSTRSS 93
>gb|CV060822.1|CV060822 BNEL61f11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL61f11 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 561
Score = 101 bits (215), Expect(2) = 2e-025
Identities = 44/67 (65%), Positives = 51/67 (76%)
Frame = +3 / -2
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR+PR LPPG PSV QTLAQL R QGP N+WL D H+RASATATGP +
Sbjct: 296 QWVVQKQRRRRPRQLPPGKPSVRQTLAQLCPRTQGPLNMWLGDSHLRASATATGPPISPV 117
Query: 441 SSSMTRR 461
++S + R
Sbjct: 116 AASSSTR 96
Score = 33.6 bits (67), Expect(2) = 2e-025
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2 / -1
Query: 434 GQQQQHDEEDGREELARELH 493
G++QQH+EE G EELA LH
Sbjct: 117 GREQQHEEERGGEELA*SLH 58
>gb|BU983109.1|BU983109 HA28J09r HA Hordeum vulgare subsp. vulgare cDNA clone HA28J09
5-PRIME, mRNA sequence
Length = 484
Score = 112 bits (239), Expect(2) = 2e-025
Identities = 48/68 (70%), Positives = 52/68 (76%)
Frame = +3 / -3
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT GP S+
Sbjct: 305 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATIKGPPSSP 126
Query: 438 SSSSMTRR 461
++S + R
Sbjct: 125 VAASSSTR 102
Score = 22.6 bits (43), Expect(2) = 2e-025
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / -3
Query: 438 SSSSMTRRTAVKSLRESSI 494
+SSS R A +SLRE+S+
Sbjct: 119 ASSSTRRSAAERSLREASM 63
>gb|CV057326.1|CV057326 BNEL26e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL26e6 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 101 bits (215), Expect(2) = 2e-025
Identities = 44/67 (65%), Positives = 51/67 (76%)
Frame = +3 / -2
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR+PR LPPG PSV QTLAQL R QGP N+WL D H+RASATATGP +
Sbjct: 286 QWVVQKQRRRRPRQLPPGKPSVRQTLAQLCPRTQGPLNMWLGDSHLRASATATGPPISPV 107
Query: 441 SSSMTRR 461
++S + R
Sbjct: 106 AASSSTR 86
Score = 33.6 bits (67), Expect(2) = 2e-025
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2 / -1
Query: 434 GQQQQHDEEDGREELARELH 493
G++QQH+EE G EELA LH
Sbjct: 107 GREQQHEEERGGEELA*SLH 48
>gb|CV057555.1|CV057555 BNEL29b5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL29b5 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 101 bits (215), Expect(2) = 2e-025
Identities = 44/67 (65%), Positives = 51/67 (76%)
Frame = +3 / -2
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR+PR LPPG PSV QTLAQL R QGP N+WL D H+RASATATGP +
Sbjct: 286 QWVVQKQRRRRPRQLPPGKPSVRQTLAQLCPRTQGPLNMWLGDSHLRASATATGPPISPV 107
Query: 441 SSSMTRR 461
++S + R
Sbjct: 106 AASSSTR 86
Score = 33.6 bits (67), Expect(2) = 2e-025
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2 / -1
Query: 434 GQQQQHDEEDGREELARELH 493
G++QQH+EE G EELA LH
Sbjct: 107 GREQQHEEERGGEELA*SLH 48
>gb|CV059057.1|CV059057 BNEL43h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43h3 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 101 bits (215), Expect(2) = 2e-025
Identities = 44/67 (65%), Positives = 51/67 (76%)
Frame = +3 / -2
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR+PR LPPG PSV QTLAQL R QGP N+WL D H+RASATATGP +
Sbjct: 286 QWVVQKQRRRRPRQLPPGKPSVRQTLAQLCPRTQGPLNMWLGDSHLRASATATGPPISPV 107
Query: 441 SSSMTRR 461
++S + R
Sbjct: 106 AASSSTR 86
Score = 33.6 bits (67), Expect(2) = 2e-025
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2 / -1
Query: 434 GQQQQHDEEDGREELARELH 493
G++QQH+EE G EELA LH
Sbjct: 107 GREQQHEEERGGEELA*SLH 48
>gb|BQ464026.1|BQ464026 HF01C09T HF Hordeum vulgare subsp. vulgare cDNA clone HF01C09
5-PRIME, mRNA sequence
Length = 576
Score = 115 bits (245), Expect = 3e-025
Identities = 49/68 (72%), Positives = 53/68 (77%)
Frame = +3 / -3
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 310 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 131
Query: 438 SSSSMTRR 461
++S + R
Sbjct: 130 VAASSSTR 107
>gb|BQ659635.1|BQ659635 HF01C09w HF Hordeum vulgare subsp. vulgare cDNA clone HF01C09
3-PRIME, mRNA sequence
Length = 587
Score = 115 bits (245), Expect = 3e-025
Identities = 49/68 (72%), Positives = 53/68 (77%)
Frame = +3 / +2
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 278 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 457
Query: 438 SSSSMTRR 461
++S + R
Sbjct: 458 VAASSSTR 481
>gb|BU969935.1|BU969935 HB13B13r BC Hordeum vulgare subsp. vulgare cDNA clone HB13B13
5-PRIME, mRNA sequence
Length = 400
Score = 115 bits (245), Expect = 3e-025
Identities = 49/68 (72%), Positives = 53/68 (77%)
Frame = +3 / -3
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 314 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 135
Query: 438 SSSSMTRR 461
++S + R
Sbjct: 134 VAASSSTR 111
>gb|BU984694.1|BU984694 HF04L08r HF Hordeum vulgare subsp. vulgare cDNA clone HF04L08
5-PRIME, mRNA sequence
Length = 564
Score = 115 bits (245), Expect = 3e-025
Identities = 49/68 (72%), Positives = 53/68 (77%)
Frame = +3 / -1
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 255 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 76
Query: 438 SSSSMTRR 461
++S + R
Sbjct: 75 VAASSSTR 52
>gb|BU985142.1|BU985142 HF06E05r HF Hordeum vulgare subsp. vulgare cDNA clone HF06E05
5-PRIME, mRNA sequence
Length = 564
Score = 115 bits (245), Expect = 3e-025
Identities = 49/68 (72%), Positives = 53/68 (77%)
Frame = +3 / -1
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 255 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 76
Query: 438 SSSSMTRR 461
++S + R
Sbjct: 75 VAASSSTR 52
>gb|CA011721.1|CA011721 HT03F21r HT Hordeum vulgare subsp. vulgare cDNA clone HT03F21
5-PRIME, mRNA sequence
Length = 402
Score = 115 bits (245), Expect = 3e-025
Identities = 49/68 (72%), Positives = 53/68 (77%)
Frame = +3 / -1
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 312 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSP 133
Query: 438 SSSSMTRR 461
++S + R
Sbjct: 132 VAASSSTR 109
>gb|BQ661645.1|BQ661645 HM04I05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04I05
3-PRIME, mRNA sequence
Length = 424
Score = 111 bits (238), Expect = 2e-024
Identities = 47/59 (79%), Positives = 48/59 (81%)
Frame = +3 / +2
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSA 434
WQ VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 239 WQWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSS 415
>gb|BM377924.2|BM377924 EBem04_SQ004_J18_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_J18 5', mRNA sequence
Length = 419
Score = 111 bits (236), Expect = 4e-024
Identities = 48/69 (69%), Positives = 54/69 (78%)
Frame = +3 / -1
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR PRHLP G PSVLQTLAQLD R QGP NLWL D HVRASAT TGP S+
Sbjct: 290 QWVVQKQRRRNPRHLPSGKPSVLQTLAQLDLRTQGPLNLWLRDSHVRASATITGPPSSPV 111
Query: 441 SSSMTRRTA 467
++S + R++
Sbjct: 110 AASSSTRSS 84
>gb|CV063068.1|CV063068 BNEL86c5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL86c5 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 487
Score = 98.2 bits (208), Expect(2) = 6e-023
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = +3 / +1
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR+PRHLPPG PSV QTLAQL R QGP N+W D ++RA ATATGP+ +
Sbjct: 211 QWVVQKQRRRRPRHLPPGKPSVRQTLAQLCPRTQGPLNMWFGDSNLRAFATATGPSISPV 390
Query: 441 SSSMTRR 461
++S + R
Sbjct: 391 AASSSTR 411
Score = 28.6 bits (56), Expect(2) = 6e-023
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2 / +3
Query: 434 GQQQQHDEEDGREELARELH 493
G++QQH E+ G +ELA LH
Sbjct: 390 GREQQHKEKRGGKELA*SLH 449
>gb|CV061340.1|CV061340 BNEL67f9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL67f9 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 481
Score = 95.5 bits (202), Expect(2) = 4e-022
Identities = 42/67 (62%), Positives = 48/67 (71%)
Frame = +3 / +1
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR+PRHLPPG PSV QTLA L R QGP N+WL D ++RA ATATGP
Sbjct: 205 QWVVQKQRRRRPRHLPPGKPSVRQTLAHLCPRTQGPLNMWLGDLNLRAFATATGPPIFPV 384
Query: 441 SSSMTRR 461
++S R
Sbjct: 385 AASSXTR 405
Score = 28.6 bits (56), Expect(2) = 4e-022
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2 / +3
Query: 434 GQQQQHDEEDGREELARELH 493
G++Q H+E+ G EELA LH
Sbjct: 384 GREQXHEEKRGGEELA*TLH 443
>gb|BQ763071.1|BQ763071 EBro02_SQ007_H03_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_H03 5', mRNA sequence
Length = 568
Score = 101 bits (215), Expect = 4e-021
Identities = 44/70 (62%), Positives = 50/70 (71%)
Frame = +3 / -1
Query: 258 WQCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSAD 437
WQ VVQK RRR RH P G PSVLQTLAQLD R QGP NLWL + HV ASAT TGP S+
Sbjct: 298 WQWVVQKHRRRNLRHWPSGKPSVLQTLAQLDLRTQGPMNLWLRELHVCASATITGPPSSP 119
Query: 438 SSSSMTRRTA 467
+ S + R++
Sbjct: 118 VAGSSSTRSS 89
>gb|CV054686.1|CV054686 BNEL112b8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112b8 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 402
Score = 101 bits (215), Expect = 4e-021
Identities = 44/67 (65%), Positives = 51/67 (76%)
Frame = +3 / +3
Query: 261 QCVVQKQRRRKPRHLPPGNPSVLQTLAQLDRRRQGPRNLWLCDWHVRASATATGPTSADS 440
Q VVQKQRRR+PR LPPG PSV QTLAQL R QGP N+WL D H+RASATATGP +
Sbjct: 156 QWVVQKQRRRRPRQLPPGKPSVRQTLAQLCPRTQGPLNMWLGDSHLRASATATGPPISPV 335
Query: 441 SSSMTRR 461
++S + R
Sbjct: 336 AASSSTR 356
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 203,364,416
Number of Sequences: 312970
Number of extensions: 2600649
Number of successful extensions: 59793
Number of sequences better than 1.0e-020: 36
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 5980755969
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)