TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493528.2.1
(627 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV834576.1|AV834576 AV834576 K. Sato unpublished cDNA li... 365 e-100
gb|CA005317.1|CA005317 HU11A16u HU Hordeum vulgare subsp. v... 274 3e-073
gb|BM100585.1|BM100585 EBma01_SQ005_K12_R maternal, 4 DPA, ... 216 7e-056
gb|AJ435202.1|AJ435202 AJ435202 S00002 Hordeum vulgare subs... 198 3e-050
>gb|AV834576.1|AV834576 AV834576 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags3i09, mRNA sequence
Length = 686
Score = 365 bits (791), Expect = e-100
Identities = 164/189 (86%), Positives = 172/189 (91%)
Frame = -2 / -2
Query: 617 QSQMIAEDRSLLLEKEYRNNILDDLLEVKSFLTQRLGEMRNADTSSLQHQVQAVSPFVLQ 438
Q + E+RS LLEKEYRNNILDDLLEVKSFLT RL EMRNADTSSLQHQVQAVSPFVLQ
Sbjct: 637 QYECSTEERSQLLEKEYRNNILDDLLEVKSFLTLRLAEMRNADTSSLQHQVQAVSPFVLQ 458
Query: 437 QHAPDSLENMLVEISSAISLLTNQKTLDLIMILNSKRFLDRLVSSLEEKKHHEVKLREGL 258
Q+APD LENMLVE+SSAISLLTNQKTLDLIMILNS RFLDRLVS+LEEKKHHEV REGL
Sbjct: 457 QYAPDRLENMLVEVSSAISLLTNQKTLDLIMILNSXRFLDRLVSTLEEKKHHEVXXREGL 278
Query: 257 GDLSVKRMELQNALSSSWPKQEAAITKTRELKKLCESTLSSVFDGRPVYIIGEINTLLSS 78
G LSVKRMELQNA SSWPKQEAAITKTRELKKLCE+TLSS+FD RPV+IIGEIN LLSS
Sbjct: 277 GXLSVKRMELQNAXKSSWPKQEAAITKTRELKKLCEATLSSMFDSRPVHIIGEINNLLSS 98
Query: 77 SVSQLAG*L 51
S SQLAG*L
Sbjct: 97 SGSQLAG*L 71
Score = 270 bits (585), Expect = 4e-072
Identities = 128/183 (69%), Positives = 137/183 (74%)
Frame = +1 / +3
Query: 52 SHPAN*LTLELSKVLISPIIYTGLPSKTXXXXXXXXXXXXXXXXIAASCFGHDDDSAFCS 231
+HPAN*L LELSK+LISPII TGL S IAASCFG DD AFCS
Sbjct: 72 NHPAN*LPLELSKLLISPIICTGLLSNIDESVASQSFFSSLVFVIAASCFGQDDFXAFCS 251
Query: 232 SIRLTDKSPKPXXXXXXXXXXXXKLETNLSRNLLELRIIIRSRVF*LVSNEIADEISTSM 411
S+R TDK PKP K++TNLS+NL ELRIIIRSRVF LVS EIA+E STS+
Sbjct: 252 SMRFTDKXPKPSRXXTS*CFFSSKVDTNLSKNLXELRIIIRSRVFWLVSREIAEETSTSI 431
Query: 412 FSKLSGACCWRTKGETACT*CCRDDVSAFLISPKR*VKNDFTSSKSSRILFLYSFSSNKL 591
FSK SGA CWRTKGETA T*CCRDDVSAFLIS +R VKNDFTSSKSSRILFLYSFSSN L
Sbjct: 432 FSKRSGAYCWRTKGETAWT*CCRDDVSAFLISARRRVKNDFTSSKSSRILFLYSFSSN*L 611
Query: 592 LSS 600
LSS
Sbjct: 612 LSS 620
Score = 229 bits (495), Expect(2) = 2e-060
Identities = 112/183 (61%), Positives = 134/183 (73%)
Frame = -1 / -1
Query: 603 S*R*KFVAGERI*E*YSG*FTRGKIIFDSTLRGDEECRHIISTASSASCLTFCSPAACS* 424
+*R K VAGE I*+*YSG*FT G+IIFD T GDE+C +IISTAS S LTFCSP CS*
Sbjct: 623 N*RKKSVAGEGI*K*YSG*FT*GEIIFDPTPSGDEKC*YIISTASGPSRLTFCSPTVCS* 444
Query: 423 QFGEHACRDLVSNLIAN*SEDS*PYNDP*L*KVSG*ISFKLRREEASRSKTTGRFR*FIC 244
FGE+ACR +SNL A+* E+S*PYNDP L K+ G I LRR+E S T R R F+
Sbjct: 443 SFGEYACRGFLSNLSAH*PENS*PYNDPQLXKIFGQIGVNLRRKETS*GXGTRRLRXFVS 264
Query: 243 *AYGAAKRTVIIMAKARGSNYKNKGTKEAV*VDTVVCF*WKTSVYNWRDQYFTELKC*SI 64
A+GAAK T +I+A+ARGS+YKN+GTKEA+* +T + + S YNWRD FTE K *SI
Sbjct: 263 EAHGAAKCTKVILAEARGSDYKNEGTKEAL*GNTFIYVR*QASAYNWRD**FTEFKW*SI 84
Query: 63 SWM 55
SWM
Sbjct: 83 SWM 75
Score = 202 bits (435), Expect = 2e-051
Identities = 107/196 (54%), Positives = 121/196 (61%)
Frame = +2 / +1
Query: 38 RNENTVIQLID*HLSSVKY*SLQLYTLVFHQKQTTVSTHTASXXXXXXXXXXXXXXMMMT 217
R ++IQLID HL+SV Y*SLQLY L ++ V H AS M
Sbjct: 58 RYSQSIIQLIDYHLNSVNY*SLQLYALACYRT*MKVLPHRASLVPSFL*SLPLASARMTX 237
Query: 218 VRFAAPYA*QINHLNLPVVLLRDASSLLSLKLIYPETF*S*GSL*GQESSD*LAMRLLTR 397
V FAAP A N L+L V D S LL L I P+ F S*GSL*GQE S * A RLL +
Sbjct: 238 VHFAAPCASLTNXLSLLVPXPHDVSFLLRLTPICPKIFXS*GSL*GQEFSG**AERLLRK 417
Query: 398 SLQACSPNCQEHAAGEQKVRQLALDAVEMMCLHSSSPLSVESKMILPRVNHPEYYSYILS 577
LQA SPN QEH GEQKVR+L DAVEMM H SSPL V SKMI P+VNHPEYY YI S
Sbjct: 418 PLQAYSPNDQEHTVGEQKVRRLGPDAVEMMYQHFSSPLGVGSKMISPQVNHPEYYFYIPS 597
Query: 578 PATNFYLQLSFETELV 625
PAT+F+LQL+ L+
Sbjct: 598 PATDFFLQLNIHIVLI 645
Score = 171 bits (369), Expect(2) = 8e-053
Identities = 83/128 (64%), Positives = 98/128 (76%)
Frame = +3 / +2
Query: 219 CVLQLHTLNR*IT*TFP*FYFVMLLLF*A*N*SIQKPFRVKDHYKVKSLLIS*Q*DC*RD 398
C+LQLH L+ T* F + +M L F* *+ S+QK RV+DHYKVKS L+S Q DC* +
Sbjct: 239 CILQLHALH*QXT*AFSXXHLMMFLFF*G*HQSVQKSXRVEDHYKVKSFLVSEQRDC*GN 418
Query: 399 LYKHVLQTVRSMLLENKR*DSLHLML*R*CVCIPHLP*ALSQK*FYLE*IIQNIIPIFFL 578
LYKH+LQT+RS+LLENKR*D L LML*R*C+ I HL *A QK*F+L+*IIQNII IF L
Sbjct: 419 LYKHILQTIRSILLENKR*DGLDLML*R*CISISHLR*A*GQK*FHLK*IIQNIISIFLL 598
Query: 579 QQQTSIFS 602
QQ TS FS
Sbjct: 599 QQLTSFFS 622
Score = 115 bits (245), Expect(2) = 5e-048
Identities = 56/98 (57%), Positives = 67/98 (68%)
Frame = -3 / -3
Query: 331 KGFWID*FQA*KRRSITK*NYGKV*VIYLLSVWSCKTHCHHHGQSKRQQLQKQGN*RSCV 152
K FW D Q *K+R+I + K *VI S WSCK H H G+SKRQ+LQK+GN*RS V
Sbjct: 351 KDFWTDWCQP*KKRNIMRXXXEKA*VICQ*SAWSCKMHXSHPGRSKRQRLQKRGN*RSSV 172
Query: 151 SRHCRLFLMEDQCI*LERSILY*AQVLVN*LDDCIFVP 38
+H L + QCI*LER I+Y* QV+VN*LDD + VP
Sbjct: 171 RQHFHLCSIAGQCI*LERLIIY*VQVVVN*LDD*LTVP 58
Score = 95.9 bits (203), Expect(2) = 5e-048
Identities = 46/75 (61%), Positives = 48/75 (64%)
Frame = -3 / -3
Query: 601 LKIEVCCWRKNIGIIFWMIYSR*NHF*LNA*GR*GMQTHHLYSIKCKXXXXXXXXXXXLT 422
LK EV CWR+NI IIFWMIY R*NHF* A* R* M HHLYSI+ K L
Sbjct: 621 LKKEVSCWRRNIEIIFWMIYLR*NHF*PYA*RR*EMLIHHLYSIRSKPSHLLFSNSMLLI 442
Query: 421 VWRTCL*RSRQQSHC 377
VWR CL*R QQS C
Sbjct: 441 VWRICL*RFPQQSLC 397
Score = 55.1 bits (114), Expect(2) = 8e-053
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = +3 / +2
Query: 39 GTKIQSSS*LTNT*AQ*SIDLSNYIHWSSIKNRRQCRLTQ 158
GT QSSS*LT T* Q* I+LSNY+HW +I++R +C LT+
Sbjct: 59 GTVNQSSS*LTTT*TQ*IINLSNYMHWPAIEHR*KCCLTE 178
Score = 23.1 bits (44), Expect(2) = 2e-060
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3 / -2
Query: 73 LVN*LDDCIFVPRP 32
L *L DC FVP P
Sbjct: 85 LAG*LIDCTFVPEP 44
>gb|CA005317.1|CA005317 HU11A16u HU Hordeum vulgare subsp. vulgare cDNA clone HU11A16
3-PRIME, mRNA sequence
Length = 478
Score = 274 bits (593), Expect = 3e-073
Identities = 122/132 (92%), Positives = 128/132 (96%)
Frame = -2 / -1
Query: 446 VLQQHAPDSLENMLVEISSAISLLTNQKTLDLIMILNSKRFLDRLVSSLEEKKHHEVKLR 267
VLQQ+APD LENMLVE+SSAISLLTNQKTLDLIMILNSKRFLDRLVS+LEEKKHHEVKLR
Sbjct: 478 VLQQYAPDRLENMLVEVSSAISLLTNQKTLDLIMILNSKRFLDRLVSTLEEKKHHEVKLR 299
Query: 266 EGLGDLSVKRMELQNALSSSWPKQEAAITKTRELKKLCESTLSSVFDGRPVYIIGEINTL 87
EGLGDLSVKRMELQNALSSSWPKQEAAITKTRELKKLCE+TLSS+FD RPV+IIGEIN L
Sbjct: 298 EGLGDLSVKRMELQNALSSSWPKQEAAITKTRELKKLCEATLSSMFDSRPVHIIGEINNL 119
Query: 86 LSSSVSQLAG*L 51
LSSS SQLAG*L
Sbjct: 118 LSSSGSQLAG*L 83
Score = 180 bits (388), Expect = 5e-045
Identities = 83/131 (63%), Positives = 91/131 (69%)
Frame = +1 / +3
Query: 52 SHPAN*LTLELSKVLISPIIYTGLPSKTXXXXXXXXXXXXXXXXIAASCFGHDDDSAFCS 231
+HPAN*L LELSK+LISPII TGL S IAASCFG DDDSAFCS
Sbjct: 84 NHPAN*LPLELSKLLISPIICTGLLSNIDESVASQSFFSSLVFVIAASCFGQDDDSAFCS 263
Query: 232 SIRLTDKSPKPXXXXXXXXXXXXKLETNLSRNLLELRIIIRSRVF*LVSNEIADEISTSM 411
S+R TDKSPKP K++TNLS+NLLELRIIIRSRVF LVS EIA+E STS+
Sbjct: 264 SMRFTDKSPKPSRSFTS*CFFSSKVDTNLSKNLLELRIIIRSRVFWLVSREIAEETSTSI 443
Query: 412 FSKLSGACCWR 444
FSK SGA CWR
Sbjct: 444 FSKRSGAYCWR 476
Score = 166 bits (358), Expect(2) = 1e-041
Identities = 77/130 (59%), Positives = 96/130 (73%)
Frame = -1 / -3
Query: 444 SPAACS*QFGEHACRDLVSNLIAN*SEDS*PYNDP*L*KVSG*ISFKLRREEASRSKTTG 265
SP CS* FGE+ACR +SNL A+* E+S*PYNDP L*K+ G I LRR+E S + T
Sbjct: 476 SPTVCS*SFGEYACRGFLSNLSAH*PENS*PYNDPQL*KIFGQIGVNLRRKETS*GEATR 297
Query: 264 RFR*FIC*AYGAAKRTVIIMAKARGSNYKNKGTKEAV*VDTVVCF*WKTSVYNWRDQYFT 85
R R*F+ A+GAAK T++I+A+ARGS+YKN+GTKEA+* +T + + S YNWRD FT
Sbjct: 296 RLR*FVSEAHGAAKCTIVILAEARGSDYKNEGTKEAL*GNTFIYVR*QASAYNWRD**FT 117
Query: 84 ELKC*SISWM 55
E K *SISWM
Sbjct: 116 EFKW*SISWM 87
Score = 122 bits (261), Expect(2) = 7e-030
Identities = 58/98 (59%), Positives = 70/98 (71%)
Frame = -3 / -2
Query: 331 KGFWID*FQA*KRRSITK*NYGKV*VIYLLSVWSCKTHCHHHGQSKRQQLQKQGN*RSCV 152
K FW D Q *K+R+I +*+Y K *VI S WSCK H H G+SKRQ+LQK+GN*RS V
Sbjct: 363 KDFWTDWCQP*KKRNIMR*SYEKA*VICQ*SAWSCKMHYRHPGRSKRQRLQKRGN*RSSV 184
Query: 151 SRHCRLFLMEDQCI*LERSILY*AQVLVN*LDDCIFVP 38
+H L + QCI*LER I+Y* QV+VN*LDD + VP
Sbjct: 183 RQHFHLCSIAGQCI*LERLIIY*VQVVVN*LDD*LTVP 70
Score = 119 bits (254), Expect = 2e-026
Identities = 69/136 (50%), Positives = 77/136 (56%)
Frame = +2 / +1
Query: 38 RNENTVIQLID*HLSSVKY*SLQLYTLVFHQKQTTVSTHTASXXXXXXXXXXXXXXMMMT 217
R ++IQLID HL+SV Y*SLQLY L ++ V H AS M
Sbjct: 70 RYSQSIIQLIDYHLNSVNY*SLQLYALACYRT*MKVLPHRASLVPSFL*SLPLASARMTI 249
Query: 218 VRFAAPYA*QINHLNLPVVLLRDASSLLSLKLIYPETF*S*GSL*GQESSD*LAMRLLTR 397
V FAAP A NHL+L V D S LL L I P+ F*S*GSL*GQE S * A RLL +
Sbjct: 250 VHFAAPCASLTNHLSLLVASPHDVSFLLRLTPICPKIF*S*GSL*GQEFSG**AERLLRK 429
Query: 398 SLQACSPNCQEHAAGE 445
LQA SPN QEH GE
Sbjct: 430 PLQAYSPNDQEHTVGE 477
Score = 108 bits (230), Expect(2) = 8e-034
Identities = 48/76 (63%), Positives = 60/76 (78%)
Frame = +3 / +2
Query: 219 CVLQLHTLNR*IT*TFP*FYFVMLLLF*A*N*SIQKPFRVKDHYKVKSLLIS*Q*DC*RD 398
C+LQLH L+ IT* F * + +M L F* *+ S+QK FRV+DHYKVKS L+S Q DC* +
Sbjct: 251 CILQLHALH*QIT*AFS*LHLMMFLFF*G*HQSVQKSFRVEDHYKVKSFLVSEQRDC*GN 430
Query: 399 LYKHVLQTVRSMLLEN 446
LYKH+LQT+RS+LLEN
Sbjct: 431 LYKHILQTIRSILLEN 478
Score = 55.1 bits (114), Expect(2) = 8e-034
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = +3 / +2
Query: 39 GTKIQSSS*LTNT*AQ*SIDLSNYIHWSSIKNRRQCRLTQ 158
GT QSSS*LT T* Q* I+LSNY+HW +I++R +C LT+
Sbjct: 71 GTVNQSSS*LTTT*TQ*IINLSNYMHWPAIEHR*KCCLTE 190
Score = 27.6 bits (54), Expect(2) = 7e-030
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3 / -2
Query: 421 VWRTCL*RSRQQSHC 377
VWR CL*R QQS C
Sbjct: 453 VWRICL*RFPQQSLC 409
Score = 23.1 bits (44), Expect(2) = 1e-041
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3 / -1
Query: 73 LVN*LDDCIFVPRP 32
L *L DC FVP P
Sbjct: 97 LAG*LIDCTFVPEP 56
>gb|BM100585.1|BM100585 EBma01_SQ005_K12_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_K12 5', mRNA sequence
Length = 429
Score = 216 bits (467), Expect = 7e-056
Identities = 96/103 (93%), Positives = 100/103 (97%)
Frame = -2 / +1
Query: 359 LDLIMILNSKRFLDRLVSSLEEKKHHEVKLREGLGDLSVKRMELQNALSSSWPKQEAAIT 180
LDLIMILNSKRFLDRLVS+LEEKKHHEVKLREGLGDLSVKRMELQNALSSSWPKQEAAIT
Sbjct: 1 LDLIMILNSKRFLDRLVSTLEEKKHHEVKLREGLGDLSVKRMELQNALSSSWPKQEAAIT 180
Query: 179 KTRELKKLCESTLSSVFDGRPVYIIGEINTLLSSSVSQLAG*L 51
KTRELKKLCE+TLSS+FD RPV+IIGEIN LLSSS SQLAG*L
Sbjct: 181 KTRELKKLCEATLSSMFDSRPVHIIGEINNLLSSSGSQLAG*L 309
Score = 132 bits (282), Expect = 2e-030
Identities = 61/102 (59%), Positives = 67/102 (65%)
Frame = +1 / -2
Query: 52 SHPAN*LTLELSKVLISPIIYTGLPSKTXXXXXXXXXXXXXXXXIAASCFGHDDDSAFCS 231
+HPAN*L LELSK+LISPII TGL S IAASCFG DDDSAFCS
Sbjct: 308 NHPAN*LPLELSKLLISPIICTGLLSNIDESVASQSFFSSLVFVIAASCFGQDDDSAFCS 129
Query: 232 SIRLTDKSPKPXXXXXXXXXXXXKLETNLSRNLLELRIIIRS 357
S+R TDKSPKP K++TNLS+NLLELRIIIRS
Sbjct: 128 SMRFTDKSPKPSRSFTS*CFFSSKVDTNLSKNLLELRIIIRS 3
Score = 126 bits (269), Expect(2) = 1e-029
Identities = 59/101 (58%), Positives = 74/101 (73%)
Frame = -1 / +3
Query: 357 *PYNDP*L*KVSG*ISFKLRREEASRSKTTGRFR*FIC*AYGAAKRTVIIMAKARGSNYK 178
*PYNDP L*K+ G I LRR+E S + T R R*F+ A+GAAK T++I+A+ARGS+YK
Sbjct: 3 *PYNDPQL*KIFGQIGVNLRRKETS*GEATRRLR*FVSEAHGAAKCTIVILAEARGSDYK 182
Query: 177 NKGTKEAV*VDTVVCF*WKTSVYNWRDQYFTELKC*SISWM 55
N+GTKEA+* +T + + S YNWRD FTE K *SISWM
Sbjct: 183 NEGTKEAL*GNTFIYVR*QASAYNWRD**FTEFKW*SISWM 305
Score = 122 bits (261), Expect = 2e-027
Identities = 58/98 (59%), Positives = 70/98 (71%)
Frame = -3 / +2
Query: 331 KGFWID*FQA*KRRSITK*NYGKV*VIYLLSVWSCKTHCHHHGQSKRQQLQKQGN*RSCV 152
K FW D Q *K+R+I +*+Y K *VI S WSCK H H G+SKRQ+LQK+GN*RS V
Sbjct: 29 KDFWTDWCQP*KKRNIMR*SYEKA*VICQ*SAWSCKMHYRHPGRSKRQRLQKRGN*RSSV 208
Query: 151 SRHCRLFLMEDQCI*LERSILY*AQVLVN*LDDCIFVP 38
+H L + QCI*LER I+Y* QV+VN*LDD + VP
Sbjct: 209 RQHFHLCSIAGQCI*LERLIIY*VQVVVN*LDD*LTVP 322
Score = 23.1 bits (44), Expect(2) = 1e-029
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3 / +1
Query: 73 LVN*LDDCIFVPRP 32
L *L DC FVP P
Sbjct: 295 LAG*LIDCTFVPEP 336
>gb|AJ435202.1|AJ435202 AJ435202 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200048C01F1, mRNA sequence
Length = 533
Score = 198 bits (426), Expect = 3e-050
Identities = 88/100 (88%), Positives = 93/100 (93%)
Frame = -2 / +3
Query: 350 IMILNSKRFLDRLVSSLEEKKHHEVKLREGLGDLSVKRMELQNALSSSWPKQEAAITKTR 171
I L +RFLDRLVS+LEEKKHHEVKLREGLGDLSVKRMELQNALSSSWPKQEAAITKTR
Sbjct: 156 ICFLPCQRFLDRLVSTLEEKKHHEVKLREGLGDLSVKRMELQNALSSSWPKQEAAITKTR 335
Query: 170 ELKKLCESTLSSVFDGRPVYIIGEINTLLSSSVSQLAG*L 51
ELKKLCE+TLSS+FD RPV+IIGEIN LLSSS SQLAG*L
Sbjct: 336 ELKKLCEATLSSMFDSRPVHIIGEINNLLSSSGSQLAG*L 455
Score = 122 bits (261), Expect = 2e-027
Identities = 58/98 (59%), Positives = 70/98 (71%)
Frame = -3 / +1
Query: 331 KGFWID*FQA*KRRSITK*NYGKV*VIYLLSVWSCKTHCHHHGQSKRQQLQKQGN*RSCV 152
K FW D Q *K+R+I +*+Y K *VI S WSCK H H G+SKRQ+LQK+GN*RS V
Sbjct: 175 KDFWTDWCQP*KKRNIMR*SYEKA*VICQ*SAWSCKMHYRHPGRSKRQRLQKRGN*RSSV 354
Query: 151 SRHCRLFLMEDQCI*LERSILY*AQVLVN*LDDCIFVP 38
+H L + QCI*LER I+Y* QV+VN*LDD + VP
Sbjct: 355 RQHFHLCSIAGQCI*LERLIIY*VQVVVN*LDD*LTVP 468
Score = 114 bits (243), Expect = 5e-025
Identities = 52/93 (55%), Positives = 58/93 (62%)
Frame = +1 / -2
Query: 52 SHPAN*LTLELSKVLISPIIYTGLPSKTXXXXXXXXXXXXXXXXIAASCFGHDDDSAFCS 231
+HPAN*L LELSK+LISPII TGL S IAASCFG DDDSAFCS
Sbjct: 454 NHPAN*LPLELSKLLISPIICTGLLSNIDESVASQSFFSSLVFVIAASCFGQDDDSAFCS 275
Query: 232 SIRLTDKSPKPXXXXXXXXXXXXKLETNLSRNL 330
S+R TDKSPKP K++TNLS+NL
Sbjct: 274 SMRFTDKSPKPSRSFTS*CFFSSKVDTNLSKNL 176
Score = 111 bits (237), Expect(2) = 3e-025
Identities = 53/96 (55%), Positives = 68/96 (70%)
Frame = -1 / +2
Query: 342 P*L*KVSG*ISFKLRREEASRSKTTGRFR*FIC*AYGAAKRTVIIMAKARGSNYKNKGTK 163
P L K+ G I LRR+E S + T R R*F+ A+GAAK T++I+A+ARGS+YKN+GTK
Sbjct: 164 PSLSKIFGQIGVNLRRKETS*GEATRRLR*FVSEAHGAAKCTIVILAEARGSDYKNEGTK 343
Query: 162 EAV*VDTVVCF*WKTSVYNWRDQYFTELKC*SISWM 55
EA+* +T + + S YNWRD FTE K *SISWM
Sbjct: 344 EAL*GNTFIYVR*QASAYNWRD**FTEFKW*SISWM 451
Score = 23.1 bits (44), Expect(2) = 3e-025
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3 / +3
Query: 73 LVN*LDDCIFVPRP 32
L *L DC FVP P
Sbjct: 441 LAG*LIDCTFVPEP 482
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 231,443,669
Number of Sequences: 312970
Number of extensions: 2720959
Number of successful extensions: 27667
Number of sequences better than 1.0e-020: 5
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6659423313
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)