TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493499.2.1
(785 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare s... 115 2e-040
gb|BF257303.2|BF257303 HVSMEf0012H19f Hordeum vulgare seedl... 104 5e-040
gb|BU994619.1|BU994619 HM07K10r HM Hordeum vulgare subsp. v... 105 2e-035
emb|X15694.1|HVBRNZ1H Barley bronze 1 homologue for UDPgluc... 105 6e-035
gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA li... 99 2e-034
gb|BM816260.1|BM816260 HC113E04_SK.ab1 HC Hordeum vulgare s... 105 3e-034
gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA li... 106 1e-033
gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, wat... 100 1e-033
gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedl... 93 2e-033
gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA li... 104 5e-033
gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA li... 92 2e-032
gb|AJ462135.1|AJ462135 AJ462135 S00002 Hordeum vulgare subs... 133 8e-031
gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedl... 79 2e-029
gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. v... 105 2e-029
gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedl... 84 2e-028
gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedl... 74 6e-028
gb|BF620291.2|BF620291 HVSMEc0019F18f Hordeum vulgare seedl... 80 8e-028
gb|CA009114.1|CA009114 HU13D11r HU Hordeum vulgare subsp. v... 96 1e-027
gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedl... 105 5e-027
gb|CA015634.1|CA015634 HT14O18r HT Hordeum vulgare subsp. v... 85 7e-027
emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for p... 83 2e-026
gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedl... 95 6e-026
gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. v... 116 1e-025
gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. v... 116 1e-025
gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedl... 85 3e-025
gb|BI780035.2|BI780035 EBma08_SQ001_D16_R maternal, 28 DPA,... 69 2e-024
gb|BF623637.2|BF623637 HVSMEa0003E04f Hordeum vulgare seedl... 78 2e-024
gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. v... 106 2e-022
gb|BQ466592.1|BQ466592 HT02P16r HT Hordeum vulgare subsp. v... 70 2e-022
gb|CV063917.1|CV063917 BNEL94f3 Barley EST endosperm librar... 71 4e-022
gb|BU998386.1|BU998386 HI10O06r HI Hordeum vulgare subsp. v... 68 5e-022
gb|CV059888.1|CV059888 BNEL52a6 Barley EST endosperm librar... 71 5e-022
gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedl... 104 6e-022
gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. v... 104 6e-022
gb|CV058275.1|CV058275 BNEL36c3 Barley EST endosperm librar... 71 4e-021
gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, dro... 97 4e-021
gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. v... 101 5e-021
gb|BM816261.1|BM816261 HC113F04_SK.ab1 HC Hordeum vulgare s... 100 7e-021
gb|BM443110.2|BM443110 EBro02_SQ002_J16_R root, 3 week, hyd... 66 9e-021
>gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105A11_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 872
Score = 115 bits (246), Expect(2) = 2e-040
Identities = 49/118 (41%), Positives = 65/118 (55%)
Frame = -1 / +3
Query: 551 ETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNAR 372
E + R + +W Q V+ H AVG F THCGW SM+E + GVPML P FAEQ N+R
Sbjct: 444 EATKGRCLLASWCEQEAVMRHEAVGAFLTHCGWNSMMEGLGAGVPMLCWPFFAEQQTNSR 623
Query: 371 YVTHQWGIGYEVGKPLERTAMAKAARKLMAGELGPQGPRERARLLKAQAKQCVAEGGG 198
Y +WG+G EVG + R + R++M G + ERA K A + A+ GG
Sbjct: 624 YACVEWGVGMEVGDDVRRVVVEARIREVMGGGEVXRENAERAAXWKEVASRSTAQPGG 797
Score = 70.7 bits (148), Expect(2) = 2e-040
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = -1 / +3
Query: 770 DPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVRG 600
D +CL WL R PRSV+YV+ GSV + + E AW LA G FLW++R V+G
Sbjct: 243 DQSCLEWLQGREPRSVVYVNYGSVTTMSKQELVEFAWGLANCGYDFLWIVRNDLVKG 413
>gb|BF257303.2|BF257303 HVSMEf0012H19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012H19f, mRNA sequence
Length = 847
Score = 104 bits (222), Expect(2) = 5e-040
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = -1 / +3
Query: 536 RGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQ 357
RG +V WAPQ EVL HPAV GFWTH GW S E++ EGVPML +P +Q+ NAR V H
Sbjct: 378 RGMVVEWAPQEEVLRHPAVAGFWTHGGWNSTTESVCEGVPMLCRPHLXDQMGNARDVKHV 557
Query: 356 WGIGYE 339
W +G E
Sbjct: 558 WKVGLE 575
Score = 88.6 bits (187), Expect(2) = 3e-028
Identities = 37/65 (56%), Positives = 42/65 (64%)
Frame = +1 / -1
Query: 340 SYPMPHWCVTYLAFTICSAKHGCTSMGTPSDMASTMDFHPQCVQNPPTAGCARTSLCGAH 519
S P H C T LAF I S K G S+GTPS S ++F P CVQNP TAGC TS CGAH
Sbjct: 574 SKPTFHTCFTSLAFPIWSXKCGRQSIGTPSHTLSVVEFQPPCVQNPATAGCRSTSSCGAH 395
Query: 520 ATILP 534
+T +P
Sbjct: 394 STTIP 380
Score = 79.9 bits (168), Expect(2) = 5e-040
Identities = 33/55 (60%), Positives = 39/55 (70%)
Frame = -1 / +3
Query: 770 DPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSV 606
D +CL WLDA+P SVLYVS GS+A + ETAW +AGS VPFLWV+R G V
Sbjct: 159 DRSCLKWLDAQPAASVLYVSFGSLACMSARDLVETAWGIAGSRVPFLWVVRPGLV 323
Score = 56.5 bits (117), Expect(2) = 3e-028
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = +1 / -1
Query: 631 RNGTPLPASAHAVSSNTARSTRATLPMLTYRTERGGRASSHAKQVGS 771
RNGT LPA HAVS+ + A LP LTY T+ G ASSH +Q+ S
Sbjct: 298 RNGTRLPAMPHAVSTRSRADMHARLPKLTYSTDAAGCASSHFRQLRS 158
>gb|BU994619.1|BU994619 HM07K10r HM Hordeum vulgare subsp. vulgare cDNA clone HM07K10
5-PRIME, mRNA sequence
Length = 603
Score = 105 bits (224), Expect(2) = 2e-035
Identities = 41/96 (42%), Positives = 58/96 (60%)
Frame = -1 / +3
Query: 551 ETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNAR 372
E++ RG + +W PQ VL H AVG F TH GW S V+++ GVP L P FAEQ N+R
Sbjct: 309 ESIEGRGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCWPFFAEQQTNSR 488
Query: 371 YVTHQWGIGYEVGKPLERTAMAKAARKLMAGELGPQ 264
Y +WG+ E+G+ + R + R+ M+GE G +
Sbjct: 489 YSCVEWGVAMEIGQDVRRETVEAKIREAMSGEKGKE 596
Score = 63.4 bits (132), Expect(2) = 2e-035
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = -1 / +3
Query: 770 DPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVRG 600
D +C +LD + PRSV+YV+ GS+ + E AW LA SG FLW++R V+G
Sbjct: 108 DVSCFNFLDGKEPRSVVYVNYGSITVMSNEELLEFAWGLANSGQSFLWIIRPDLVKG 278
>emb|X15694.1|HVBRNZ1H Barley bronze 1 homologue for UDPglucose flavonol 3,0 glucosyl
transferase
Length = 2326
Score = 105 bits (224), Expect(2) = 6e-035
Identities = 48/114 (42%), Positives = 61/114 (53%)
Frame = -1 / +2
Query: 542 RHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVT 363
R G +V WAPQ VL H AVG F TH GW S++E +S GVPM +P F +Q +NAR V
Sbjct: 1640 RAPGLVVPWAPQVGVLRHAAVGAFVTHAGWASVMEGVSSGVPMACRPFFGDQTMNARSVA 1819
Query: 362 HQWGIGYEVGKPLERTAMAKAARKLMAGELGPQGPRERARLLKAQAKQCVAEGG 201
WG G P+ R A+A A L+ GE G + + L K +GG
Sbjct: 1820 SVWGFGTAFDGPMTRGAVANAVATLLRGEDGERMRAKAQELQAMVGKAFEPDGG 1981
Score = 90.9 bits (192), Expect(2) = 4e-027
Identities = 42/88 (47%), Positives = 45/88 (51%)
Frame = +1 / -2
Query: 271 PSSPAISFLAAFAMAVLSSGFPTSYPMPHWCVTYLAFTICSAKHGCTSMGTPSDMASTMD 450
PSSP S AFA A G + P PH T AF + S K G +MGTP D S D
Sbjct: 1911 PSSPRSSVATAFATAPRVIGPSNAVPKPHTLATDRAFIVWSPKKGRHAMGTPLDTPSITD 1732
Query: 451 FHPQCVQNPPTAGCARTSLCGAHATILP 534
HP CV N PTA C T CGAH T P
Sbjct: 1731 AHPACVTNAPTAACRSTPTCGAHGTTRP 1648
Score = 62.0 bits (129), Expect(2) = 6e-035
Identities = 27/48 (56%), Positives = 29/48 (60%)
Frame = -1 / +2
Query: 761 CLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLR 618
CLAWLD RP RSV YVS G+ A +E A L SG PFLW LR
Sbjct: 1460 CLAWLDRRPARSVAYVSFGTNATARPDELQELAAGLEASGAPFLWSLR 1603
Score = 50.6 bits (104), Expect(2) = 4e-027
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +1 / -2
Query: 628 HRNGTPLPASAHAVSSNTARSTRATLPMLTYRTERGGRASSHAKQ 762
HRNG PL +S A S +++ A +P LTY T+R GR SS A+Q
Sbjct: 1593 HRNGAPLASSPAASSCSSSGRAVAFVPKLTYATDRAGRRSSQARQ 1459
>gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags5b03, mRNA sequence
Length = 671
Score = 98.7 bits (209), Expect(2) = 2e-034
Identities = 40/89 (44%), Positives = 52/89 (58%)
Frame = -1 / +1
Query: 536 RGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQ 357
R + W PQ +VL AVG F TH GW S +E I GVPM+ P FA+Q N RY +
Sbjct: 310 RSMLSTWCPQEKVLEQEAVGVFLTHSGWNSSLEGICGGVPMVCWPFFADQQTNCRYKCTE 489
Query: 356 WGIGYEVGKPLERTAMAKAARKLMAGELG 270
WGIG E+G ++RT + R+ M G+ G
Sbjct: 490 WGIGMEIGDDVKRTEVEALIREAMEGDKG 576
Score = 67.5 bits (141), Expect(2) = 2e-034
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 758 LAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVRG 600
L WLD RPPRSV+YV+ GS+A + + E AW LA +G FLW +R V+G
Sbjct: 103 LRWLDGRPPRSVVYVNFGSIAVMSKEHMLEFAWGLANTGYAFLWNVRPDLVKG 261
>gb|BM816260.1|BM816260 HC113E04_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113E04_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 842
Score = 105 bits (223), Expect(2) = 3e-034
Identities = 43/97 (44%), Positives = 55/97 (56%)
Frame = -1 / +2
Query: 536 RGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQ 357
R + W PQ +VL H A+G F TH GW S +E I GVPM+ P F EQ N RY +
Sbjct: 278 RSMLSTWCPQEKVLEHEAIGVFLTHSGWNSSLEGICGGVPMVCWPFFTEQQTNCRYKCTE 457
Query: 356 WGIGYEVGKPLERTAMAKAARKLMAGELGPQGPRERA 246
WGIG E+G+ + RT + R+ M G GP+ RA
Sbjct: 458 WGIGMEIGEEVTRTEVEAILREAMEGGEGPRDATARA 568
Score = 87.2 bits (184), Expect(2) = 9e-024
Identities = 36/91 (39%), Positives = 50/91 (54%)
Frame = +1 / -3
Query: 247 ALSLGPCGPSSPAISFLAAFAMAVLSSGFPTSYPMPHWCVTYLAFTICSAKHGCTSMGTP 426
A ++ GPS P+++ + +VL + P S PMPH Y CS K G ++GTP
Sbjct: 567 ARAVASLGPSPPSMASRRMASTSVLVTSSPISIPMPHSVHLYRQLVCCSVKKGQHTIGTP 388
Query: 427 SDMASTMDFHPQCVQNPPTAGCARTSLCGAH 519
M S +FHP+CV+N P A C+ T CG H
Sbjct: 387 PQMPSNDEFHPECVRNTPMASCSSTFSCGHH 295
Score = 60.2 bits (125), Expect(2) = 3e-034
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = -1 / +2
Query: 758 LAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVRG 600
L WLD +PP SV+YV+ GS+ + E AW LA SG FLW +R V+G
Sbjct: 71 LRWLDNQPPGSVVYVNFGSITVMSNEHLLEFAWGLANSGYTFLWNVRPDLVKG 229
Score = 42.8 bits (87), Expect(2) = 9e-024
Identities = 21/44 (47%), Positives = 24/44 (54%)
Frame = +1 / -3
Query: 628 HRNGTPLPASAHAVSSNTARSTRATLPMLTYRTERGGRASSHAK 759
H+ PL AS HA SS + LP LTY TE GG SSH +
Sbjct: 201 HKKV*PLLASPHANSSKCSLDITVMLPKLTYTTEPGG*LSSHRR 70
>gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3k12 3', mRNA sequence
Length = 651
Score = 106 bits (227), Expect(2) = 1e-033
Identities = 43/118 (36%), Positives = 65/118 (55%)
Frame = -1 / -1
Query: 554 RETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNA 375
+ V +G +V WAPQ+ VL+HP+V F +HCGW S +E + GVP L P FA+Q N
Sbjct: 378 KRRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQFCNQ 199
Query: 374 RYVTHQWGIGYEVGKPLERTAMAKAARKLMAGELGPQGPRERARLLKAQAKQCVAEGG 201
Y+ + WG G ++ + + +A LG +G + RA + K A ++EGG
Sbjct: 198 SYICNVWGTGVKIHADERGVVTKEEIKNKVAQLLGDEGIKARAAIWKDAACTSISEGG 25
Score = 56.5 bits (117), Expect(2) = 1e-033
Identities = 26/57 (45%), Positives = 31/57 (54%)
Frame = -1 / -1
Query: 770 DPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVRG 600
D CL WLDA+ SV+YV+ GS D A F E A L +G PFLW +R G
Sbjct: 576 DSACLPWLDAQARGSVIYVAFGSFTVFDAARFLELADGLELTGRPFLWTVRTNFTTG 406
>gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_G23 5', mRNA sequence
Length = 594
Score = 100 bits (213), Expect(2) = 1e-033
Identities = 42/94 (44%), Positives = 54/94 (57%)
Frame = -1 / +2
Query: 551 ETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNAR 372
E R RG + +W Q VL H AV F TH GW S VEA+ GVPML P FAEQ N R
Sbjct: 209 EATRGRGLVASWCDQEAVLRHDAVCVFLTHSGWNSTVEALCGGVPMLCWPFFAEQQTNCR 388
Query: 371 YVTHQWGIGYEVGKPLERTAMAKAARKLMAGELG 270
Y +WG+ E+G + R A+ ++ +AG+ G
Sbjct: 389 YKCVEWGVAMEIGDDVRREAVEGRIKEAVAGDKG 490
Score = 62.9 bits (131), Expect(2) = 1e-033
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = -1 / +2
Query: 764 TCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVR 603
TCL WLD + RSV+YV+ GSV + E AW LA SG FLW++R V+
Sbjct: 5 TCLRWLDGKRRRSVVYVNFGSVTVMSSHDLAEFAWGLANSGQEFLWIVRPDVVK 166
>gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008E02f, mRNA sequence
Length = 718
Score = 92.7 bits (196), Expect(2) = 2e-033
Identities = 36/77 (46%), Positives = 49/77 (63%)
Frame = -1 / +2
Query: 536 RGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQ 357
RG + +W PQ+EVL HPAVG F TH GW S +E++ GVP++ P FA+Q N R ++
Sbjct: 458 RGLMASWCPQQEVLNHPAVGAFLTHSGWNSALESLFGGVPVISWPFFADQQTNCRSQCNE 637
Query: 356 WGIGYEVGKPLERTAMA 306
WG G E+ + R A A
Sbjct: 638 WGRGMEIDSNVRRDARA 688
Score = 69.8 bits (146), Expect(2) = 2e-033
Identities = 27/54 (50%), Positives = 35/54 (64%)
Frame = -1 / +2
Query: 761 CLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVRG 600
CL WLD R P SV+YV+ GS+ + A E AW LA SG F+W++RR V+G
Sbjct: 251 CLQWLDGRQPGSVVYVNFGSITVMTNAQMVEFAWGLAQSGKQFMWIVRRDLVKG 412
>gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16h10 3', mRNA sequence
Length = 669
Score = 104 bits (222), Expect(2) = 5e-033
Identities = 43/118 (36%), Positives = 63/118 (53%)
Frame = -1 / -3
Query: 554 RETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNA 375
+ V +G +V WAPQ+ VL+HP+V F +HCGW S +E + GVP L P FA+Q N
Sbjct: 391 KRRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQFCNQ 212
Query: 374 RYVTHQWGIGYEVGKPLERTAMAKAARKLMAGELGPQGPRERARLLKAQAKQCVAEGG 201
Y+ + WG G ++ + + +A LG +G + RA + K A EGG
Sbjct: 211 SYICNVWGTGVKIHADERGVVTKEEIKNKVAQLLGDEGIKARAAIWKDAACTSXXEGG 38
Score = 56.5 bits (117), Expect(2) = 5e-033
Identities = 26/57 (45%), Positives = 31/57 (54%)
Frame = -1 / -3
Query: 770 DPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVRG 600
D CL WLDA+ SV+YV+ GS D A F E A L +G PFLW +R G
Sbjct: 589 DSACLPWLDAQARGSVIYVAFGSFTVFDAARFLELADGLELTGRPFLWTVRTNFTTG 419
>gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26i01 5', mRNA sequence
Length = 518
Score = 91.8 bits (194), Expect(2) = 2e-032
Identities = 37/82 (45%), Positives = 48/82 (58%)
Frame = -1 / +3
Query: 536 RGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQ 357
R + W PQ +VL AVG F TH GW S +E I GVPM+ P FA+Q N RY +
Sbjct: 273 RSMLSTWCPQEKVLEQEAVGVFLTHSGWNSSLEGICGGVPMVCWPFFADQQTNCRYKCTE 452
Query: 356 WGIGYEVGKPLERTAMAKAARK 291
WGIG E+G ++RT + R+
Sbjct: 453 WGIGMEIGDDVKRTEVEALIRE 518
Score = 67.5 bits (141), Expect(2) = 2e-032
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = -1 / +3
Query: 758 LAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVRG 600
L WLD RPPRSV+YV+ GS+A + + E AW LA +G FLW +R V+G
Sbjct: 66 LRWLDGRPPRSVVYVNFGSIAVMSKEHMLEFAWGLANTGYAFLWNVRPDLVKG 224
>gb|AJ462135.1|AJ462135 AJ462135 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200058E12F1, mRNA sequence
Length = 360
Score = 133 bits (286), Expect = 8e-031
Identities = 54/102 (52%), Positives = 66/102 (64%)
Frame = -1 / +2
Query: 536 RGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQ 357
RG +V WAPQ EVL HPAV GFWTH GW S E++ EGVPML +P F +Q+ NARYV H
Sbjct: 11 RGMVVEWAPQEEVLRHPAVAGFWTHGGWNSTTESMCEGVPMLCRPHFGDQMGNARYVEHV 190
Query: 356 WGIGYEVGKPLERTAMAKAARKLMAGELGPQGPRERARLLKA 231
W +G+EV LER + KA R+L+ G G + L KA
Sbjct: 191 WKVGFEVAGALERLDVEKAIRRLVTGSEGAEMRARAGELKKA 316
Score = 109 bits (233), Expect = 2e-023
Identities = 49/88 (55%), Positives = 56/88 (63%)
Frame = +1 / -1
Query: 271 PSSPAISFLAAFAMAVLSSGFPTSYPMPHWCVTYLAFTICSAKHGCTSMGTPSDMASTMD 450
PS P S AF+ + LSS TS P H C TYLAF I S K G S+GTPS M S ++
Sbjct: 276 PSLPVTSRRMAFSTSNLSSAPATSKPTFHTCSTYLAFPIWSPKCGRQSIGTPSHMLSVVE 97
Query: 451 FHPQCVQNPPTAGCARTSLCGAHATILP 534
F P CVQNP TAGC TS CGAH+T +P
Sbjct: 96 FQPPCVQNPATAGCRSTSSCGAHSTTIP 13
>gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008B22f, mRNA sequence
Length = 741
Score = 79.4 bits (167), Expect(2) = 2e-029
Identities = 32/61 (52%), Positives = 38/61 (62%)
Frame = -1 / +3
Query: 551 ETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNAR 372
E + R + +W Q VL HPA+G F THCGW S AIS G+PML P FAEQ N+R
Sbjct: 381 EATKGRCLLASWCEQEAVLQHPALGVFLTHCGWNSTFVAISAGLPMLCWPFFAEQQTNSR 560
Query: 371 Y 369
Y
Sbjct: 561 Y 563
Score = 69.8 bits (146), Expect(2) = 2e-029
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = -1 / +3
Query: 770 DPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRR 615
D +CL WLD R P SV+YV+ GS+ + E AW LA SG PFLW++R+
Sbjct: 165 DRSCLEWLDGREPGSVVYVNFGSITTMSGEELVEFAWGLANSGHPFLWIVRK 320
>gb|CB880150.1|CB880150 HM05K10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05K10
3-PRIME, mRNA sequence
Length = 622
Score = 105 bits (224), Expect(2) = 2e-029
Identities = 41/96 (42%), Positives = 58/96 (60%)
Frame = -1 / -2
Query: 551 ETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNAR 372
E++ RG + +W PQ VL H AVG F TH GW S V+++ GVP L P FAEQ N+R
Sbjct: 468 ESIEGRGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCWPFFAEQQTNSR 289
Query: 371 YVTHQWGIGYEVGKPLERTAMAKAARKLMAGELGPQ 264
Y +WG+ E+G+ + R + R+ M+GE G +
Sbjct: 288 YSCVEWGVAMEIGQDVRRETVEAKIREAMSGEKGKE 181
Score = 43.2 bits (88), Expect(2) = 2e-029
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -1 / -2
Query: 722 LYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVRG 600
+YV+ GS+ + E AW LA SG FLW++R V+G
Sbjct: 621 VYVNYGSITVMSNEELLEFAWGLANSGQSFLWIIRPDLVKG 499
>gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001A18f, mRNA sequence
Length = 612
Score = 84.0 bits (177), Expect(2) = 2e-028
Identities = 33/65 (50%), Positives = 41/65 (63%)
Frame = -1 / +3
Query: 518 WAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQWGIGYE 339
WAPQ +L+HPAVGGF THCGW + +EAIS GVP L P FA+Q + R + +G
Sbjct: 255 WAPQVTILSHPAVGGFLTHCGWNATLEAISHGVPALTWPNFADQFCSERLLVDVLRVGVR 434
Query: 338 VGKPL 324
G L
Sbjct: 435 SGAKL 449
Score = 61.6 bits (128), Expect(2) = 2e-028
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = -1 / +3
Query: 758 LAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLR 618
++WLDARPP SVLY+S GS+A++ E A L SG PF+W ++
Sbjct: 24 VSWLDARPPASVLYISFGSIAKLPAKQVAELARGLEASGRPFVWAIK 164
>gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008D18f, mRNA sequence
Length = 769
Score = 74.4 bits (156), Expect(2) = 6e-028
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = -1 / +3
Query: 551 ETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNAR 372
E + R + +W Q VL HPA+G F THCGW S AIS G+PML P EQ N+R
Sbjct: 381 EATKGRCLLASWCEQEAVLQHPALGVFLTHCGWNSTFVAISAGLPMLCWPFLREQQTNSR 560
Query: 371 Y 369
Y
Sbjct: 561 Y 563
Score = 69.8 bits (146), Expect(2) = 6e-028
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = -1 / +3
Query: 770 DPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRR 615
D +CL WLD R P SV+YV+ GS+ + E AW LA SG PFLW++R+
Sbjct: 165 DRSCLEWLDGREPGSVVYVNFGSITTMSGEELVEFAWGLANSGHPFLWIVRK 320
>gb|BF620291.2|BF620291 HVSMEc0019F18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019F18f, mRNA sequence
Length = 689
Score = 79.9 bits (168), Expect(2) = 8e-028
Identities = 33/55 (60%), Positives = 39/55 (70%)
Frame = -1 / +2
Query: 770 DPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSV 606
D +CL WLDA+P SVLYVS GS+A + ETAW +AGS VPFLWV+R G V
Sbjct: 359 DRSCLKWLDAQPAASVLYVSFGSLACMSARDLVETAWGIAGSRVPFLWVVRPGLV 523
Score = 63.8 bits (133), Expect(2) = 8e-028
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = -1 / +2
Query: 536 RGKIVAWAPQREVLAHPAVGGFWTHCGWK 450
RG +V WAPQ EVL HPAV GFWTH GWK
Sbjct: 578 RGMVVEWAPQEEVLPHPAVAGFWTHGGWK 664
>gb|CA009114.1|CA009114 HU13D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU13D11
5-PRIME, mRNA sequence
Length = 581
Score = 95.9 bits (203), Expect(2) = 1e-027
Identities = 35/62 (56%), Positives = 44/62 (70%)
Frame = -1 / +2
Query: 518 WAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQWGIGYE 339
WAPQ +LAHPAVGGF THCGW S +E+++ GVPM+ P FAEQ VN + + G+G
Sbjct: 287 WAPQVAILAHPAVGGFMTHCGWGSTLESVAAGVPMVTWPLFAEQFVNEKLIVDVLGVGVS 466
Query: 338 VG 333
VG
Sbjct: 467 VG 472
Score = 46.9 bits (96), Expect(2) = 1e-027
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -1 / +2
Query: 761 CLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLR 618
C++WLD + SV+YVS GS + A + AL P +WV+R
Sbjct: 59 CMSWLDGKKAESVVYVSFGSAGCIPPAQLMQLGMALVSCRWPVMWVMR 202
>gb|BF255421.3|BF255421 HVSMEf0006N01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006N01f, mRNA sequence
Length = 584
Score = 105 bits (224), Expect(2) = 5e-027
Identities = 41/96 (42%), Positives = 58/96 (60%)
Frame = -1 / +1
Query: 551 ETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNAR 372
E++ RG + +W PQ VL H AVG F TH GW S V+++ GVP L P FAEQ N+R
Sbjct: 118 ESIEGRGVLASWCPQEAVLRHEAVGVFLTHSGWNSTVDSLCGGVPTLCWPFFAEQQTNSR 297
Query: 371 YVTHQWGIGYEVGKPLERTAMAKAARKLMAGELGPQ 264
Y +WG+ E+G+ + R + R+ M+GE G +
Sbjct: 298 YSCVEWGVAMEIGQDVRRETVEAKIREAMSGEKGKE 405
Score = 35.4 bits (71), Expect(2) = 5e-027
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1 / +1
Query: 671 ETAWALAGSGVPFLWVLRRGSVRG 600
E AW LA SG FLW++R V+G
Sbjct: 16 EFAWGLANSGQSFLWIIRPDLVKG 87
>gb|CA015634.1|CA015634 HT14O18r HT Hordeum vulgare subsp. vulgare cDNA clone HT14O18
5-PRIME, mRNA sequence
Length = 622
Score = 84.9 bits (179), Expect(2) = 7e-027
Identities = 30/62 (48%), Positives = 43/62 (69%)
Frame = -1 / +2
Query: 518 WAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQWGIGYE 339
WAPQ +L+H A+GGF THCGW S++EA+S GVPM+ P +A+Q N + V +G+
Sbjct: 296 WAPQMLILSHAALGGFVTHCGWNSVLEAVSAGVPMVTWPRYADQFNNEKLVVELLKVGFS 475
Query: 338 VG 333
+G
Sbjct: 476 IG 481
Score = 55.6 bits (115), Expect(2) = 7e-027
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -1 / +2
Query: 764 TCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVL 621
+CL WLDA+P SV+YVS G++ + A + A AL SGV F+WV+
Sbjct: 59 SCLRWLDAKPAGSVVYVSFGTLTKFAPAELHQLARALDLSGVNFVWVI 202
>emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for putative glycosyltransferase (sf2
gene)
Length = 863
Score = 83.1 bits (175), Expect(2) = 2e-026
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = -1 / +1
Query: 518 WAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQWGIGYE 339
WAPQ +L+H A+GGF THCGW S++EA+S GVPM+ P +A+Q N + V +G
Sbjct: 562 WAPQMLILSHAALGGFVTHCGWNSVLEAVSAGVPMVTWPRYADQFNNEKLVVELLKVGVS 741
Query: 338 VG 333
+G
Sbjct: 742 IG 747
Score = 55.6 bits (115), Expect(2) = 2e-026
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -1 / +1
Query: 764 TCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVL 621
+CL WLDA+P SV+YVS G++ + A + A AL SGV F+WV+
Sbjct: 325 SCLRWLDAKPAGSVVYVSFGTLTKFAPAELHQLARALDLSGVNFVWVI 468
>gb|BF260942.2|BF260942 HVSMEf0023F14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023F14f, mRNA sequence
Length = 816
Score = 95.5 bits (202), Expect(2) = 6e-026
Identities = 35/91 (38%), Positives = 57/91 (62%)
Frame = -1 / +3
Query: 557 LRETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVN 378
+R + + ++V WAPQR+VL H AVG F TH GW S +E+++EGVP + P F +Q +N
Sbjct: 174 IRTAGKSKARVVEWAPQRDVLRHRAVGCFLTHAGWNSTLESVAEGVPTVCWPFFVDQQIN 353
Query: 377 ARYVTHQWGIGYEVGKPLERTAMAKAARKLM 285
+R++ WG G ++ E+ + + R+ M
Sbjct: 354 SRFMGAVWGSGLDMKDVCEKAVVERMVREAM 446
Score = 41.8 bits (85), Expect(2) = 6e-026
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -1 / +3
Query: 728 SVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLR 618
+V+YVS+GS+A + F E L +G PFLWVLR
Sbjct: 18 TVVYVSLGSLAVISVEEFTEFLSGLVSAGHPFLWVLR 128
>gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. vulgare cDNA clone HV06P19
3-PRIME, mRNA sequence
Length = 447
Score = 116 bits (248), Expect = 1e-025
Identities = 51/122 (41%), Positives = 67/122 (54%)
Frame = -1 / -1
Query: 551 ETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNAR 372
E + R + +W Q V+ H AVG F THCGW SM+E + GVPML P FAEQ N+R
Sbjct: 435 EATKGRCLLASWCEQEAVMRHEAVGAFLTHCGWNSMMEGLGAGVPMLCWPFFAEQQTNSR 256
Query: 371 YVTHQWGIGYEVGKPLERTAMAKAARKLMAGELGPQGPRERARLLKAQAKQCVAEGGGIS 192
Y +WG+G EVG + R + R++M G + R R K A + A+ GG S
Sbjct: 255 YACVEWGVGMEVGDDVRRVVVEARIREVMGGGEVGREMRRRVAEWKEVASRSTAQLGGRS 76
Query: 191 LA 186
LA
Sbjct: 75 LA 70
>gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. vulgare cDNA clone HV06O20
3-PRIME, mRNA sequence
Length = 490
Score = 116 bits (248), Expect = 1e-025
Identities = 51/122 (41%), Positives = 67/122 (54%)
Frame = -1 / -2
Query: 551 ETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNAR 372
E + R + +W Q V+ H AVG F THCGW SM+E + GVPML P FAEQ N+R
Sbjct: 435 EATKGRCLLASWCEQEAVMRHEAVGAFLTHCGWNSMMEGLGAGVPMLCWPFFAEQQTNSR 256
Query: 371 YVTHQWGIGYEVGKPLERTAMAKAARKLMAGELGPQGPRERARLLKAQAKQCVAEGGGIS 192
Y +WG+G EVG + R + R++M G + R R K A + A+ GG S
Sbjct: 255 YACVEWGVGMEVGDDVRRVVVEARIREVMGGGEVGREMRRRVAEWKEVASRSTAQLGGRS 76
Query: 191 LA 186
LA
Sbjct: 75 LA 70
>gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007K11f, mRNA sequence
Length = 697
Score = 85.4 bits (180), Expect(2) = 3e-025
Identities = 36/76 (47%), Positives = 46/76 (60%)
Frame = -1 / +2
Query: 557 LRETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVN 378
L+E G I +W PQ EVLAH A+G F THCGW S +EA+ GVP + P +A+Q
Sbjct: 206 LKEKCGKIGLIGSWCPQLEVLAHRAIGCFITHCGWNSTLEALVNGVPFVGIPHWADQPTI 385
Query: 377 ARYVTHQWGIGYEVGK 330
A+YV WG+G K
Sbjct: 386 AKYVESAWGMGVRARK 433
Score = 49.6 bits (102), Expect(2) = 3e-025
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = -1 / +2
Query: 770 DPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLR 618
D C+ WL+ + SV+ VS G+V+ D EE L S PFLWV+R
Sbjct: 23 DVECMDWLEIQMNSSVVLVSYGTVSNYDATQLEELGNGLCNSSKPFLWVVR 175
>gb|BI780035.2|BI780035 EBma08_SQ001_D16_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ001_D16 5', mRNA sequence
Length = 582
Score = 69.3 bits (145), Expect(2) = 2e-024
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = -1 / +3
Query: 542 RHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAE 390
R G +V WAPQ VL H AVG F TH GW S++E +S GVPM +P F +
Sbjct: 429 RAPGLVVPWAPQVGVLRHAAVGAFVTHAGWASVMEGVSSGVPMACRPFFGD 581
Score = 62.9 bits (131), Expect(2) = 2e-024
Identities = 28/51 (54%), Positives = 30/51 (58%)
Frame = -1 / +3
Query: 761 CLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGS 609
CLAWLD RP RSV YVS G+ A +E A L SG PFLW LR S
Sbjct: 246 CLAWLDRRPARSVAYVSFGTNATARPDELQELAAGLEASGAPFLWSLREES 398
>gb|BF623637.2|BF623637 HVSMEa0003E04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0003E04f, mRNA sequence
Length = 485
Score = 78.0 bits (164), Expect(2) = 2e-024
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +1
Query: 518 WAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYV 366
WAPQ +L H A+GGF THCGW S +E I GVPM+ P F+EQ VN + V
Sbjct: 322 WAPQVMILWHQAIGGFVTHCGWNSTIEGICAGVPMITWPHFSEQFVNEKLV 474
Score = 54.2 bits (112), Expect(2) = 2e-024
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = -1 / +1
Query: 761 CLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRG 612
CL WLD+R P SV++VS GS+A E L S PF+WV++ G
Sbjct: 91 CLQWLDSRKPGSVIFVSFGSLACTTPQQLVELGLGLEASQKPFIWVIKAG 240
>gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT09K12
3-PRIME, mRNA sequence
Length = 361
Score = 106 bits (226), Expect = 2e-022
Identities = 47/105 (44%), Positives = 60/105 (57%)
Frame = -1 / -1
Query: 500 VLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQWGIGYEVGKPLE 321
V+ H AVG F THCGW SM+E + GVPML P FAEQ N+RY +WG+G EVG +
Sbjct: 361 VMRHEAVGAFLTHCGWNSMMEGLGAGVPMLCWPFFAEQQTNSRYACVEWGVGMEVGDDVR 182
Query: 320 RTAMAKAARKLMAGELGPQGPRERARLLKAQAKQCVAEGGGISLA 186
R + R++M G + R R K A + A+ GG SLA
Sbjct: 181 RVVVEARIREVMGGGEVGRHMRRRVAEWKEVASRSTAQLGGRSLA 47
>gb|BQ466592.1|BQ466592 HT02P16r HT Hordeum vulgare subsp. vulgare cDNA clone HT02P16
5-PRIME, mRNA sequence
Length = 606
Score = 69.8 bits (146), Expect(2) = 2e-022
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = -1 / +1
Query: 554 RETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCF 396
+ V +G +V WAPQ+ VL+HP++ F +HCGW S +E + GVP L P F
Sbjct: 448 KRRVEGKGLVVGWAPQQRVLSHPSIACFVSHCGWNSTMEGLRHGVPFLCWPYF 606
Score = 55.6 bits (115), Expect(2) = 2e-022
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = -1 / +1
Query: 761 CLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRGSVRG 600
CL WLDA+ SV+YV+ GS D A F+E A L +G PFLW +R G
Sbjct: 259 CLPWLDAQARGSVVYVAFGSFTIFDAARFQELADGLELTGRPFLWAVRPNITTG 420
>gb|CV063917.1|CV063917 BNEL94f3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL94f3 5' similar to Zea mays
cis-zeatin O-glucosyltransferase 2, mRNA sequence
Length = 640
Score = 71.2 bits (149), Expect(2) = 4e-022
Identities = 27/54 (50%), Positives = 35/54 (64%)
Frame = -1 / +1
Query: 527 IVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYV 366
I WAPQ E+LAH A F +HCGW S++E +S G P+L P ++Q NA YV
Sbjct: 391 ITGWAPQLEILAHGATAFFVSHCGWNSLLEGLSHGKPILAWPMHSDQPWNAXYV 552
Score = 53.3 bits (110), Expect(2) = 4e-022
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = -1 / +1
Query: 773 PDPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLR 618
P C+ WLD +PP SVLY+ G+++ + EE A AL F+WVLR
Sbjct: 136 PRHECMDWLDKQPPSSVLYLCFGTMSSLPGKQIEELAGALQSCEQRFIWVLR 291
>gb|BU998386.1|BU998386 HI10O06r HI Hordeum vulgare subsp. vulgare cDNA clone HI10O06
5-PRIME, mRNA sequence
Length = 635
Score = 68.4 bits (143), Expect(2) = 5e-022
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = -1 / +3
Query: 527 IVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAE 390
+ +WAPQ +VL H A G F THCGW S +E I+ G+P+L P +AE
Sbjct: 498 VKSWAPQVDVLRHRATGAFMTHCGWNSTLEGITAGLPLLCWPLYAE 635
Score = 55.6 bits (115), Expect(2) = 5e-022
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = -1 / +3
Query: 761 CLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLR 618
CL WLDA+P +SV+++S GS+ EE A L SG FLWV+R
Sbjct: 246 CLRWLDAQPDQSVVFLSFGSLGTFSSKQLEEIALGLDKSGERFLWVVR 389
>gb|CV059888.1|CV059888 BNEL52a6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL52a6 5' similar to Zea mays
cis-zeatin O-glucosyltransferase 2, mRNA sequence
Length = 603
Score = 70.7 bits (148), Expect(2) = 5e-022
Identities = 27/54 (50%), Positives = 35/54 (64%)
Frame = -1 / +1
Query: 527 IVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYV 366
I WAPQ E+LAH A F +HCGW S++E +S G P+L P ++Q NA YV
Sbjct: 391 ITGWAPQLEILAHGATAFFVSHCGWNSLLEGLSHGKPILAWPMHSDQPWNAGYV 552
Score = 53.3 bits (110), Expect(2) = 5e-022
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = -1 / +1
Query: 773 PDPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLR 618
P C+ WLD +PP SVLY+ G+++ + EE A AL F+WVLR
Sbjct: 136 PRHECMDWLDKQPPSSVLYLCFGTMSSLPGKQIEELAGALQSCEQRFIWVLR 291
>gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0013E24f, mRNA sequence
Length = 573
Score = 104 bits (222), Expect = 6e-022
Identities = 39/86 (45%), Positives = 56/86 (65%)
Frame = -1 / +3
Query: 527 IVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQWGI 348
+ +W PQ+EVL HPAVG F TH GW S +E++ GVP++ P FA+Q N RY ++WG+
Sbjct: 6 MASWCPQQEVLNHPAVGAFLTHSGWNSALESLCGGVPVISWPFFADQQTNCRYQCNEWGV 185
Query: 347 GYEVGKPLERTAMAKAARKLMAGELG 270
G E+ + R A+A ++M GE G
Sbjct: 186 GMEIDSNVRRDAVAGLITEIMEGEKG 263
>gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. vulgare cDNA clone HV06B13
3-PRIME, mRNA sequence
Length = 365
Score = 104 bits (222), Expect = 6e-022
Identities = 46/104 (44%), Positives = 59/104 (56%)
Frame = -1 / -2
Query: 497 LAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQWGIGYEVGKPLER 318
+ H AVG F THCGW SM+E + GVPML P FAEQ N+RY +WG+G EVG + R
Sbjct: 364 MRHEAVGAFLTHCGWNSMMEGLGAGVPMLCWPFFAEQQTNSRYACVEWGVGMEVGDDVRR 185
Query: 317 TAMAKAARKLMAGELGPQGPRERARLLKAQAKQCVAEGGGISLA 186
+ R++M G + R R K A + A+ GG SLA
Sbjct: 184 VVVEARIREVMGGGEVGREMRRRVAEWKEVASRSTAQLGGRSLA 53
>gb|CV058275.1|CV058275 BNEL36c3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL36c3 5' similar to Zea mays
cis-zeatin O-glucosyltransferase 2, mRNA sequence
Length = 578
Score = 71.2 bits (149), Expect(2) = 4e-021
Identities = 27/54 (50%), Positives = 35/54 (64%)
Frame = -1 / +1
Query: 527 IVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYV 366
I WAPQ E+LAH A F +HCGW S++E +S G P+L P ++Q NA YV
Sbjct: 391 ITGWAPQLEILAHGATAFFVSHCGWNSLLEGLSHGKPILAWPMHSDQPWNAXYV 552
Score = 50.1 bits (103), Expect(2) = 4e-021
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -1 / +1
Query: 773 PDPTCLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLR 618
P C+ WLD +PP S LY+ G+++ + EE A AL F+WVLR
Sbjct: 136 PRHECMDWLDKQPPSSGLYLCFGTMSSLPGKQIEELAGALQSCEQRFIWVLR 291
>gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_B19 5', mRNA sequence
Length = 418
Score = 97.3 bits (206), Expect(2) = 4e-021
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = -1 / +3
Query: 536 RGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQ 357
+ ++V WAPQR+VL H AVG F TH GW S +E I+EGVP++ P F +Q +N+R+V
Sbjct: 108 KARVVGWAPQRDVLRHRAVGCFLTHAGWNSTLEGIAEGVPLVCWPFFLDQQINSRFVGAV 287
Query: 356 WGIGYEVGKPLERTAMAKAARKLMAGE 276
WG G ++ +R + R+ M E
Sbjct: 288 WGAGLDMKDVCDRAVVEDMVRQTMESE 368
Score = 24.0 bits (46), Expect(2) = 4e-021
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1 / +3
Query: 656 LAGSGVPFLWVLR 618
L SG FLWVLR
Sbjct: 3 LVNSGYTFLWVLR 41
>gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
5-PRIME, mRNA sequence
Length = 647
Score = 101 bits (215), Expect = 5e-021
Identities = 37/77 (48%), Positives = 53/77 (68%)
Frame = -1 / +3
Query: 536 RGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQ 357
RG + +W PQ+EVL HPAVG F TH GW S +E++ GVP++ P FA+Q N RY ++
Sbjct: 108 RGLMASWCPQQEVLNHPAVGAFLTHSGWNSALESLFGGVPVISWPFFADQQTNCRYQCNE 287
Query: 356 WGIGYEVGKPLERTAMA 306
WG+G E+ ++R A+A
Sbjct: 288 WGVGMEIDSNVQRDAVA 338
>gb|BM816261.1|BM816261 HC113F04_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113F04_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 935
Score = 100 bits (214), Expect = 7e-021
Identities = 42/99 (42%), Positives = 55/99 (55%)
Frame = -1 / +3
Query: 536 RGKIVAWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQPCFAEQIVNARYVTHQ 357
R + W PQ +VL H A+G F TH GW S +E I GVPM+ P F EQ N RY +
Sbjct: 105 RSMLSTWCPQEKVLEHEAIGVFLTHSGWNSSLEGICGGVPMVCWPFFTEQQTNCRYKCTE 284
Query: 356 WGIGYEVGKPLERTAMAKAARKLMAGELGPQGPRERARL 240
WGIG E+G+ + RT + R+ M G G + R +L
Sbjct: 285 WGIGMEIGEEVTRTEVEAILREAMEGGKGQEMRRRVLKL 401
>gb|BM443110.2|BM443110 EBro02_SQ002_J16_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_J16 5', mRNA sequence
Length = 427
Score = 65.7 bits (137), Expect(2) = 9e-021
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = -1 / +3
Query: 521 AWAPQREVLAHPAVGGFWTHCGWKSMVEAISEGVPMLVQP 402
+WAPQ +L H A+GGF THCGW S +E I GVPM+ P
Sbjct: 306 SWAPQVMILWHQAIGGFVTHCGWNSTIEGICAGVPMITWP 425
Score = 54.2 bits (112), Expect(2) = 9e-021
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = -1 / +3
Query: 761 CLAWLDARPPRSVLYVSMGSVARVDRAVFEETAWALAGSGVPFLWVLRRG 612
CL WLD+R P SV++VS GS+A E L S PF+WV++ G
Sbjct: 78 CLQWLDSRKPGSVIFVSFGSLACTTPQQLVELGLGLEASQKPFIWVIKAG 227
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 364,960,759
Number of Sequences: 312970
Number of extensions: 6303087
Number of successful extensions: 88397
Number of sequences better than 1.0e-020: 51
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 8799681451
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)