TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2486118.2.1
(635 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV836878.1|AV836878 AV836878 K. Sato unpublished cDNA li... 273 8e-073
gb|BM817226.1|BM817226 HC109A10_T3.ab1 HC Hordeum vulgare s... 273 8e-073
gb|BQ661800.1|BQ661800 HP01F17w HP Hordeum vulgare subsp. v... 273 8e-073
gb|BG365821.2|BG365821 HVSMEi0004F18f Hordeum vulgare 20 DA... 137 3e-036
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 150 5e-036
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 150 7e-036
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 150 7e-036
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 150 7e-036
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 150 7e-036
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 150 7e-036
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 149 2e-035
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 149 2e-035
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 149 2e-035
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 149 2e-035
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 148 3e-035
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 148 3e-035
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 148 3e-035
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 148 3e-035
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 148 3e-035
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 148 3e-035
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 148 3e-035
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 148 3e-035
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 148 3e-035
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 148 3e-035
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 148 3e-035
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 148 3e-035
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 148 3e-035
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 148 3e-035
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 148 3e-035
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 147 5e-035
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 147 5e-035
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 145 2e-034
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 145 2e-034
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 145 2e-034
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 145 2e-034
gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachi... 143 8e-034
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 143 8e-034
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 143 8e-034
gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachi... 142 2e-033
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 142 2e-033
gb|AL503953.1|AL503953 AL503953 Hordeum vulgare Barke roots... 141 3e-033
gb|AV911878.1|AV911878 AV911878 K. Sato unpublished cDNA li... 141 3e-033
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 141 3e-033
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 141 4e-033
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 140 6e-033
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 140 8e-033
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 138 2e-032
gb|AV915531.1|AV915531 AV915531 K. Sato unpublished cDNA li... 138 4e-032
gb|BQ754945.1|BQ754945 EBed02_SQ003_E09_R endosperm, 8 DPA,... 130 6e-030
gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Le... 127 7e-030
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 129 1e-029
gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Le... 129 2e-029
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 128 3e-029
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 128 3e-029
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 123 1e-027
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 123 1e-027
gb|BG417206.1|BG417206 HVSMEk0016L20f Hordeum vulgare testa... 122 1e-027
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 121 3e-027
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 121 3e-027
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 121 5e-027
gb|AV920631.1|AV920631 AV920631 K. Sato unpublished cDNA li... 114 7e-027
gb|BJ468052.1|BJ468052 BJ468052 K. Sato unpublished cDNA li... 114 6e-025
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 113 1e-024
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 111 3e-024
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 111 5e-024
gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiol... 98 5e-024
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 93 1e-023
gb|BI956663.1|BI956663 HVSMEn0004K08f Hordeum vulgare rachi... 109 1e-023
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 109 1e-023
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 109 1e-023
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 108 2e-023
gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA li... 104 4e-022
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 101 4e-021
>gb|AV836878.1|AV836878 AV836878 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd15h01, mRNA
sequence
Length = 665
Score = 273 bits (590), Expect = 8e-073
Identities = 112/122 (91%), Positives = 115/122 (94%)
Frame = +2 / -2
Query: 2 GGDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFS 181
G DD +DEF DLYIVKWTSLMIPPIVIMMVNLI IAVGFSRTIYSEIPQWSKLLGGVFFS
Sbjct: 598 GADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFS 419
Query: 182 FWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPSQNQQIGGSFTFP* 361
FWVLAHLYPFAKGLMGRRGRTPTIVFVW+GLL+ITISLLWVAINPPSQN QIGGSF FP*
Sbjct: 418 FWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFQFP* 239
Query: 362 KL 367
L
Sbjct: 238 SL 233
Score = 213 bits (459), Expect = 9e-055
Identities = 91/119 (76%), Positives = 96/119 (80%)
Frame = -3 / +3
Query: 357 GNVNDPPICWFWDGGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCASTQKL 178
GN +PPIC FWDGGLMATHS EMVM RRP QTKTMVGVRP RP+RPLANGYR ASTQKL
Sbjct: 243 GNWKEPPICEFWDGGLMATHSREMVMARRPDQTKTMVGVRPRRPMRPLANGYR*ASTQKL 422
Query: 177 KKTPPSSLLHCGISL*MVRLNPTAMPIRFTIMITMGGIISDVHLTMYRXXXXXXXXSPP 1
KKTPP SLLHCGISL*MVRL PTAM +R TIM+TMGGI+ DVHLTM R S P
Sbjct: 423 KKTPPRSLLHCGISL*MVRLKPTAMAMRLTIMMTMGGIMRDVHLTM*RSANSSFSSSAP 599
Score = 171 bits (367), Expect = 4e-042
Identities = 79/120 (65%), Positives = 88/120 (73%)
Frame = -2 / +2
Query: 361 SRECERPTNLLVLGRRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPE 182
S E E ++L VLGRRVDG+PQQ DGDGEEA PDEDDGRRA PH+ALG+ VQV Q+PE
Sbjct: 239 SGELEGASDLRVLGRRVDGNPQQGDGDGEEAGPDEDDGRRAPAAPHEALGKWVQVSQYPE 418
Query: 181 AEEDAAQQLAPLRDLAVDGAAEPDRDADQVXXXXXXXXXXXXRPLDDVQVRELVVHVVAA 2
AEED AQ+LAPLRDLAVDGAAE D D+V RPLDDV+V ELVV VV A
Sbjct: 419 AEEDTAQELAPLRDLAVDGAAEADSYGDEVDHHDDNGWDHEGRPLDDVEVGELVVFVVCA 598
Score = 99.6 bits (211), Expect(2) = 3e-025
Identities = 40/72 (55%), Positives = 44/72 (61%)
Frame = +1 / -1
Query: 34 PVHRQVDVADDPAHRDHDGEPDRHRGRVQPHHLQRDPAVEXXXXXXXXXXXXXXXPVPVR 213
P+HRQVDV DP H HDG+P RH R+QPHHLQRDPAVE PVP+
Sbjct: 566 PLHRQVDVPHDPTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPIC 387
Query: 214 QGPDGAEGPHAD 249
QGP GA HAD
Sbjct: 386 QGPHGAPRAHAD 351
Score = 35.0 bits (70), Expect(2) = 3e-025
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +3 / -3
Query: 294 CCGWPSTRRPRTSRLVGRSHS 356
CCG PSTRRPRT R S S
Sbjct: 306 CCGLPSTRRPRTRRSEAPSSS 244
>gb|BM817226.1|BM817226 HC109A10_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109A10_T3.ab1 similar to (AC009525) Very similar to
cellulose synthase catalytic subunit [Arabidopsis
thaliana], mRNA sequence
Length = 927
Score = 273 bits (590), Expect = 8e-073
Identities = 112/122 (91%), Positives = 115/122 (94%)
Frame = +2 / +1
Query: 2 GGDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFS 181
G DD +DEF DLYIVKWTSLMIPPIVIMMVNLI IAVGFSRTIYSEIPQWSKLLGGVFFS
Sbjct: 280 GADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFS 459
Query: 182 FWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPSQNQQIGGSFTFP* 361
FWVLAHLYPFAKGLMGRRGRTPTIVFVW+GLL+ITISLLWVAINPPSQN QIGGSF FP*
Sbjct: 460 FWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFQFP* 639
Query: 362 KL 367
L
Sbjct: 640 SL 645
Score = 213 bits (459), Expect = 9e-055
Identities = 91/119 (76%), Positives = 96/119 (80%)
Frame = -3 / -2
Query: 357 GNVNDPPICWFWDGGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCASTQKL 178
GN +PPIC FWDGGLMATHS EMVM RRP QTKTMVGVRP RP+RPLANGYR ASTQKL
Sbjct: 635 GNWKEPPICEFWDGGLMATHSREMVMARRPDQTKTMVGVRPRRPMRPLANGYR*ASTQKL 456
Query: 177 KKTPPSSLLHCGISL*MVRLNPTAMPIRFTIMITMGGIISDVHLTMYRXXXXXXXXSPP 1
KKTPP SLLHCGISL*MVRL PTAM +R TIM+TMGGI+ DVHLTM R S P
Sbjct: 455 KKTPPRSLLHCGISL*MVRLKPTAMAMRLTIMMTMGGIMRDVHLTM*RSANSSFSSSAP 279
Score = 174 bits (375), Expect = 3e-043
Identities = 80/120 (66%), Positives = 89/120 (74%)
Frame = -2 / -1
Query: 361 SRECERPTNLLVLGRRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPE 182
S E E ++L VLGRRVDG+PQQ DGDGEEA PDEDDGRRA PH+ALG+RVQV Q+PE
Sbjct: 639 SGELEGASDLRVLGRRVDGNPQQGDGDGEEAGPDEDDGRRAPAAPHEALGKRVQVSQYPE 460
Query: 181 AEEDAAQQLAPLRDLAVDGAAEPDRDADQVXXXXXXXXXXXXRPLDDVQVRELVVHVVAA 2
AEED AQ+LAPLRDLAVDGAAE D D+V RPLDDV+V ELVV VV A
Sbjct: 459 AEEDTAQELAPLRDLAVDGAAEADSYGDEVDHHDDNGWDHEGRPLDDVEVGELVVFVVCA 280
Score = 100 bits (212), Expect(2) = 2e-025
Identities = 41/72 (56%), Positives = 44/72 (61%)
Frame = +1 / +3
Query: 34 PVHRQVDVADDPAHRDHDGEPDRHRGRVQPHHLQRDPAVEXXXXXXXXXXXXXXXPVPVR 213
P+HRQVDV DP H HDG+P RH R+QPHHLQRDPAVE PVPV
Sbjct: 312 PLHRQVDVPHDPTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPVC 491
Query: 214 QGPDGAEGPHAD 249
QGP GA HAD
Sbjct: 492 QGPHGAPRAHAD 527
Score = 35.0 bits (70), Expect(2) = 2e-025
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +3 / +2
Query: 294 CCGWPSTRRPRTSRLVGRSHS 356
CCG PSTRRPRT R S S
Sbjct: 572 CCGLPSTRRPRTRRSEAPSSS 634
>gb|BQ661800.1|BQ661800 HP01F17w HP Hordeum vulgare subsp. vulgare cDNA clone HP01F17
3-PRIME, mRNA sequence
Length = 622
Score = 273 bits (590), Expect = 8e-073
Identities = 112/122 (91%), Positives = 115/122 (94%)
Frame = +2 / -2
Query: 2 GGDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFS 181
G DD +DEF DLYIVKWTSLMIPPIVIMMVNLI IAVGFSRTIYSEIPQWSKLLGGVFFS
Sbjct: 603 GADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFS 424
Query: 182 FWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPSQNQQIGGSFTFP* 361
FWVLAHLYPFAKGLMGRRGRTPTIVFVW+GLL+ITISLLWVAINPPSQN QIGGSF FP*
Sbjct: 423 FWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFQFP* 244
Query: 362 KL 367
L
Sbjct: 243 SL 238
Score = 207 bits (446), Expect = 6e-053
Identities = 90/119 (75%), Positives = 95/119 (79%)
Frame = -3 / +2
Query: 357 GNVNDPPICWFWDGGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCASTQKL 178
GN +PPIC F DGGLMATHS EMVM RRP QTKTMVGVRP RP+RPLANGYR ASTQKL
Sbjct: 248 GNWKEPPICEFCDGGLMATHSREMVMARRPDQTKTMVGVRPRRPMRPLANGYR*ASTQKL 427
Query: 177 KKTPPSSLLHCGISL*MVRLNPTAMPIRFTIMITMGGIISDVHLTMYRXXXXXXXXSPP 1
KKTPP SLLHCGISL*MVRL PTAM +R TIM+TMGGI+ DVHLTM R S P
Sbjct: 428 KKTPPRSLLHCGISL*MVRLKPTAMAMRLTIMMTMGGIMRDVHLTM*RSANSSFSSSAP 604
Score = 166 bits (358), Expect = 8e-041
Identities = 78/120 (65%), Positives = 86/120 (71%)
Frame = -2 / +1
Query: 361 SRECERPTNLLVLGRRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPE 182
S E E ++L VL RVDG PQQ DGDGEEA PDEDDGRRA PH+ALGERVQV Q+PE
Sbjct: 244 SGELEGASDLRVL*WRVDGDPQQGDGDGEEAGPDEDDGRRAPAAPHEALGERVQVSQYPE 423
Query: 181 AEEDAAQQLAPLRDLAVDGAAEPDRDADQVXXXXXXXXXXXXRPLDDVQVRELVVHVVAA 2
AEED AQ+LAPLRDLAVDGAAE D D+V RPLDDV+V EL+V VV A
Sbjct: 424 AEEDTAQELAPLRDLAVDGAAEADSYGDEVDHHDDNGWDHEGRPLDDVEVGELIVFVVCA 603
Score = 103 bits (220), Expect(2) = 2e-024
Identities = 42/72 (58%), Positives = 45/72 (62%)
Frame = +1 / -1
Query: 34 PVHRQVDVADDPAHRDHDGEPDRHRGRVQPHHLQRDPAVEXXXXXXXXXXXXXXXPVPVR 213
P+HRQVDV DP H HDG+P RH R+QPHHLQRDPAVE PVPVR
Sbjct: 571 PLHRQVDVPHDPTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPVR 392
Query: 214 QGPDGAEGPHAD 249
QGP GA HAD
Sbjct: 391 QGPHGAPRAHAD 356
Score = 28.1 bits (55), Expect(2) = 2e-024
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3 / -3
Query: 294 CCGWPSTRRPRTSRLVGRSHS 356
CCG PSTR RT R S S
Sbjct: 311 CCGSPSTRHHRTRRSEAPSSS 249
>gb|BG365821.2|BG365821 HVSMEi0004F18f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004F18f, mRNA sequence
Length = 888
Score = 137 bits (293), Expect(2) = 3e-036
Identities = 55/62 (88%), Positives = 57/62 (91%)
Frame = +2 / +1
Query: 2 GGDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFS 181
G DD +DEF DLYIVKWTSLMIPPIVIMMVNLI IAVGF+RTIYSEIPQWSKLLGGVF S
Sbjct: 427 GADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFNRTIYSEIPQWSKLLGGVFLS 606
Query: 182 FW 187
FW
Sbjct: 607 FW 612
Score = 100 bits (213), Expect(2) = 7e-024
Identities = 45/67 (67%), Positives = 50/67 (74%)
Frame = -3 / -2
Query: 201 RCASTQKLKKTPPSSLLHCGISL*MVRLNPTAMPIRFTIMITMGGIISDVHLTMYRXXXX 22
R + +QKLKKTPP SLLH GISL*MVRLNPTAM +R TIM+TMGGI+ DVHLTM R
Sbjct: 626 RVSQSQKLKKTPPRSLLHWGISL*MVRLNPTAMAMRLTIMMTMGGIMRDVHLTM*RSANS 447
Query: 21 XXXXSPP 1
S P
Sbjct: 446 SFSSSAP 426
Score = 34.5 bits (69), Expect(2) = 3e-036
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2 / +2
Query: 206 PFAKGLMGRRGRTPTI 253
P +GLMGRRGRTPTI
Sbjct: 629 PVRQGLMGRRGRTPTI 676
Score = 29.5 bits (58), Expect(2) = 7e-024
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3 / -1
Query: 258 KTMVGVRPLRPIRPLANG 205
+ MVGVRP RP+RP G
Sbjct: 681 EAMVGVRPRRPMRPWRTG 628
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 150 bits (323), Expect = 5e-036
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D++F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 252 DEDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 431
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 432 IIHLYPFLKGLMGRQNRTPTIVVVWAILLAYIFSLLWVRIDP 557
>gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 3', mRNA sequence
Length = 505
Score = 150 bits (322), Expect = 7e-036
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = +2 / -1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D++F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 454 DEDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 275
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 274 IIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 149
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 150 bits (322), Expect = 7e-036
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D++F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 163 DEDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 342
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 343 IIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 468
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 150 bits (322), Expect = 7e-036
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D++F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 157 DEDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 336
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 337 IIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 462
>gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
3-PRIME, mRNA sequence
Length = 651
Score = 150 bits (322), Expect = 7e-036
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = +2 / -1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D++F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 510 DEDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 331
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 330 IIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 205
>gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX10P19
3-PRIME, mRNA sequence
Length = 616
Score = 150 bits (322), Expect = 7e-036
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = +2 / -2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D++F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 453 DEDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 274
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 273 IIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 148
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 149 bits (319), Expect = 2e-035
Identities = 54/100 (54%), Positives = 72/100 (72%)
Frame = +2 / +1
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D+EF +LY KWT+L+IPP ++++N IG+ G S I + W L G +FF+FWV+
Sbjct: 97 DEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIV 276
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KGL+GR+ RTPTIV VW+ LL+ ISLLWV +NP
Sbjct: 277 HLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNP 396
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 149 bits (319), Expect = 2e-035
Identities = 54/100 (54%), Positives = 72/100 (72%)
Frame = +2 / +2
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D+EF +LY KWT+L+IPP ++++N IG+ G S I + W L G +FF+FWV+
Sbjct: 65 DEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIV 244
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KGL+GR+ RTPTIV VW+ LL+ ISLLWV +NP
Sbjct: 245 HLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNP 364
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 149 bits (319), Expect = 2e-035
Identities = 54/100 (54%), Positives = 72/100 (72%)
Frame = +2 / +1
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D+EF +LY KWT+L+IPP ++++N IG+ G S I + W L G +FF+FWV+
Sbjct: 343 DEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIV 522
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KGL+GR+ RTPTIV VW+ LL+ ISLLWV +NP
Sbjct: 523 HLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNP 642
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 149 bits (319), Expect = 2e-035
Identities = 54/100 (54%), Positives = 72/100 (72%)
Frame = +2 / +3
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D+EF +LY KWT+L+IPP ++++N IG+ G S I + W L G +FF+FWV+
Sbjct: 141 DEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIV 320
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KGL+GR+ RTPTIV VW+ LL+ ISLLWV +NP
Sbjct: 321 HLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNP 440
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 148 bits (317), Expect = 3e-035
Identities = 55/103 (53%), Positives = 73/103 (70%)
Frame = +2 / +3
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D D +F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS W
Sbjct: 285 NDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIW 464
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMG++ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 465 VILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 593
>gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 5', mRNA sequence
Length = 631
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / +1
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 139 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 318
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 319 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 447
>gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 5', mRNA sequence
Length = 604
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / +3
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 138 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 317
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 318 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 446
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / +2
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 320 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 499
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 500 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 628
>gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 3', mRNA sequence
Length = 649
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / -3
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 617 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 438
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 437 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 309
>gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 3', mRNA sequence
Length = 680
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / -1
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 674 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 495
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 494 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 366
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / +3
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 327 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 506
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 507 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 635
>gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 3', mRNA sequence
Length = 604
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / -2
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 540 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 361
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 360 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 232
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / +1
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 280 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 459
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 460 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 588
>gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31h15 3', mRNA sequence
Length = 669
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / -1
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 633 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 454
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 453 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 325
>gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
5-PRIME, mRNA sequence
Length = 643
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / +2
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 137 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 316
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 317 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 445
>gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
3-PRIME, mRNA sequence
Length = 539
Score = 148 bits (317), Expect = 3e-035
Identities = 55/103 (53%), Positives = 73/103 (70%)
Frame = +2 / -1
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D D +F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS W
Sbjct: 488 NDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIW 309
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMG++ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 308 VILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 180
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 148 bits (317), Expect = 3e-035
Identities = 54/103 (52%), Positives = 74/103 (71%)
Frame = +2 / +3
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 159 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 338
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 339 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 467
>gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
5-PRIME, mRNA sequence
Length = 617
Score = 148 bits (317), Expect = 3e-035
Identities = 55/103 (53%), Positives = 73/103 (70%)
Frame = +2 / +2
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D D +F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS W
Sbjct: 293 NDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIW 472
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMG++ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 473 VILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 601
>gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
5-PRIME, mRNA sequence
Length = 638
Score = 148 bits (317), Expect = 3e-035
Identities = 55/103 (53%), Positives = 73/103 (70%)
Frame = +2 / +2
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D D +F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS W
Sbjct: 293 NDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIW 472
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KGLMG++ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 473 VILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 601
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 147 bits (316), Expect = 5e-035
Identities = 56/102 (54%), Positives = 73/102 (71%)
Frame = +2 / -2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D++F +LY+ KWT+L+IPP I+++NL+G+ G S I W L G +FF+FWV
Sbjct: 510 DEDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWV 331
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 330 IIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 205
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 147 bits (316), Expect = 5e-035
Identities = 56/102 (54%), Positives = 73/102 (71%)
Frame = +2 / -1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D++F +LY+ KWT+L+IPP I+++NL+G+ G S I W L G +FF+FWV
Sbjct: 517 DEDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWV 338
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 337 IIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 212
>gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdl12 3', mRNA sequence
Length = 661
Score = 145 bits (312), Expect = 2e-034
Identities = 54/104 (51%), Positives = 73/104 (70%)
Frame = +2 / -1
Query: 5 GDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSF 184
G D D F DLY+ KWT+L+IPP ++++N++GI G S + + W L G +FFSF
Sbjct: 532 GADEADAFGDLYLFKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSF 353
Query: 185 WVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
WV+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SL+WV I+P
Sbjct: 352 WVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDP 221
>gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E20f, mRNA sequence
Length = 681
Score = 145 bits (311), Expect = 2e-034
Identities = 53/98 (54%), Positives = 71/98 (72%)
Frame = +2 / -2
Query: 23 EFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHL 202
+F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FWV+ HL
Sbjct: 680 DFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHL 501
Query: 203 YPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
YPF KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 500 YPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 387
>gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. vulgare cDNA clone HI05L24
3-PRIME, mRNA sequence
Length = 539
Score = 145 bits (311), Expect = 2e-034
Identities = 53/103 (51%), Positives = 72/103 (69%)
Frame = +2 / -3
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 531 NDEEGDFAELYMFKWTTLFIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 352
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
V+ HLYPF KG MGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 351 VIVHLYPFLKGFMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 223
>gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF13B10
5-PRIME, mRNA sequence
Length = 622
Score = 145 bits (311), Expect = 2e-034
Identities = 55/98 (56%), Positives = 71/98 (72%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D++F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 324 DEDNDFAELYMFKWTTLLIPPTTILIINLVGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 503
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWV 304
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV
Sbjct: 504 IIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWV 617
>gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O11f, mRNA sequence
Length = 658
Score = 143 bits (307), Expect = 8e-034
Identities = 52/100 (52%), Positives = 70/100 (70%)
Frame = +2 / -2
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
DDEF +LY KWT+L+IP ++++N+IG+ G S I + W L G +FF+FWV+
Sbjct: 519 DDEFAELYAFKWTTLLIPQTTLLVINIIGVVAGISDAINNGYQSWGPLFGKLFFAFWVIV 340
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KG MGR+ RTPTIV +W+ LL+ SLLWV I+P
Sbjct: 339 HLYPFLKGFMGRQNRTPTIVIIWSVLLASMFSLLWVRIDP 220
>gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
3-PRIME, mRNA sequence
Length = 652
Score = 143 bits (307), Expect = 8e-034
Identities = 53/98 (54%), Positives = 70/98 (71%)
Frame = +2 / -1
Query: 23 EFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHL 202
+F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS WV+ HL
Sbjct: 652 DFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHL 473
Query: 203 YPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
YPF KGLMG++ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 472 YPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 359
>gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
3-PRIME, mRNA sequence
Length = 654
Score = 143 bits (307), Expect = 8e-034
Identities = 53/98 (54%), Positives = 70/98 (71%)
Frame = +2 / -2
Query: 23 EFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHL 202
+F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS WV+ HL
Sbjct: 653 DFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHL 474
Query: 203 YPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
YPF KGLMG++ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 473 YPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 360
>gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015J16f, mRNA sequence
Length = 631
Score = 142 bits (305), Expect = 2e-033
Identities = 53/104 (50%), Positives = 72/104 (69%)
Frame = +2 / -1
Query: 5 GDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSF 184
G D D F DLY+ KWT+L+IPP ++++N++GI G S + + W L G +FFS
Sbjct: 577 GADEADAFGDLYLFKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSX 398
Query: 185 WVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
WV+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SL+WV I+P
Sbjct: 397 WVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDP 266
>gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081H04F1, mRNA sequence
Length = 360
Score = 142 bits (304), Expect = 2e-033
Identities = 52/96 (54%), Positives = 69/96 (71%)
Frame = +2 / +2
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D+EF +LY KWT+L+IPP ++++N IG+ G S I + W L G +FF+FWV+
Sbjct: 68 DEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIV 247
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWV 304
HLYPF KGL+GR+ RTPTIV VW+ LL+ ISLLWV
Sbjct: 248 HLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWV 355
>gb|AL503953.1|AL503953 AL503953 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03P07T 5', mRNA sequence
Length = 638
Score = 141 bits (303), Expect = 3e-033
Identities = 51/102 (50%), Positives = 73/102 (71%)
Frame = +2 / +3
Query: 5 GDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSF 184
GD+ D + DLY+V+WT LMI PI+I+ VN+IG AV F++ + E W K+ GGVFF+F
Sbjct: 135 GDEKKDPYADLYVVRWTPLMITPIIIIFVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNF 314
Query: 185 WVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAI 310
WVL HLYPFAKG++G+ G+TP +V VW + ++L++ I
Sbjct: 315 WVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYINI 440
>gb|AV911878.1|AV911878 AV911878 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1o11 3', mRNA sequence
Length = 558
Score = 141 bits (303), Expect = 3e-033
Identities = 51/102 (50%), Positives = 73/102 (71%)
Frame = +2 / -3
Query: 5 GDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSF 184
GD+ D + DLY+V+WT LMI PI+I+ VN+IG AV F++ + E W K+ GGVFF+F
Sbjct: 529 GDEKKDPYADLYVVRWTPLMITPIIIIFVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNF 350
Query: 185 WVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAI 310
WVL HLYPFAKG++G+ G+TP +V VW + ++L++ I
Sbjct: 349 WVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYINI 224
>gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 3', mRNA sequence
Length = 650
Score = 141 bits (303), Expect = 3e-033
Identities = 52/95 (54%), Positives = 69/95 (72%)
Frame = +2 / -1
Query: 32 DLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPF 211
+LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FWV+ HLYPF
Sbjct: 650 ELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFWVIVHLYPF 471
Query: 212 AKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
KGLMGR+ RTPTIV VWA LL+ SLLWV ++P
Sbjct: 470 LKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDP 366
>gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020M07f, mRNA sequence
Length = 533
Score = 141 bits (302), Expect = 4e-033
Identities = 52/103 (50%), Positives = 71/103 (68%)
Frame = +2 / +3
Query: 5 GDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSF 184
G D D F DLY+ KWT+L+IPP ++++N++GI G S + + W L G +FFSF
Sbjct: 225 GADEADAFGDLYLFKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSF 404
Query: 185 WVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAIN 313
WV+ HLYPF KGLMGR+ RTPTIV +W+ LL+ S +WV I+
Sbjct: 405 WVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLAYIFSFVWVRID 533
>gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12l12 5', mRNA sequence
Length = 656
Score = 140 bits (301), Expect = 6e-033
Identities = 52/100 (52%), Positives = 70/100 (70%)
Frame = +2 / +2
Query: 5 GDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSF 184
G D D F DLY+ KWT+L+IPP ++++N++GI G S + + W L G +FFSF
Sbjct: 353 GADEADAFGDLYLFKWTTLLIPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSF 532
Query: 185 WVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWV 304
WV+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SL+WV
Sbjct: 533 WVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWV 652
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 140 bits (300), Expect = 8e-033
Identities = 51/100 (51%), Positives = 70/100 (70%)
Frame = +2 / +2
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D+EF +LY KWT+L++ ++++N IG+ G S I + W L G +FF+FWV+
Sbjct: 119 DEEFSELYTFKWTTLLMAATTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIV 298
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KGL+GR+ RTPTIV VW+ LL+ ISLLWV +NP
Sbjct: 299 HLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNP 418
>gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B12_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 880
Score = 138 bits (297), Expect = 2e-032
Identities = 51/98 (52%), Positives = 69/98 (70%)
Frame = +2 / +2
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D + +F +LY+ KWT+L+IPP I+++N++G+ G S I S W L G +FF+FW
Sbjct: 518 NDEEGDFAELYMFKWTTLLIPPTTILIINMVGVVAGTSYAINSGYQSWGPLFGKLFFAFW 697
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLW 301
V+ HLYPF KGLMG + RTPTIV VWA LL+ SLLW
Sbjct: 698 VIVHLYPFLKGLMGXQNRTPTIVIVWAVLLASIFSLLW 811
>gb|AV915531.1|AV915531 AV915531 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14p10 5', mRNA sequence
Length = 629
Score = 138 bits (295), Expect = 4e-032
Identities = 49/87 (56%), Positives = 66/87 (75%)
Frame = +2 / +3
Query: 5 GDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSF 184
GD+ D + DLY+V+WT LMI PI+I+ VN+IG AV F++ + E W K+ GGVFF+F
Sbjct: 219 GDEKKDPYADLYVVRWTPLMITPIIIIFVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNF 398
Query: 185 WVLAHLYPFAKGLMGRRGRTPTIVFVW 265
WVL HLYPFAKG++G+ G+TP +V VW
Sbjct: 399 WVLFHLYPFAKGILGKHGKTPVVVLVW 479
>gb|BQ754945.1|BQ754945 EBed02_SQ003_E09_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ003_E09 5', mRNA sequence
Length = 383
Score = 130 bits (279), Expect = 6e-030
Identities = 49/75 (65%), Positives = 61/75 (81%)
Frame = +2 / +2
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
D +D F +LY V+W+ LM+PP+ IMM+N + +AVG +RT+YSE PQWSKLLGG FFSF
Sbjct: 158 DGEEDTFAELYEVRWSFLMVPPVTIMMLNAVALAVGTARTLYSEFPQWSKLLGGAFFSF* 337
Query: 188 VLAHLYPFAKGLMGR 232
VL HLYPFAKGL+GR
Sbjct: 338 VLCHLYPFAKGLLGR 382
>gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC010.D05, mRNA sequence
Length = 448
Score = 127 bits (272), Expect(2) = 7e-030
Identities = 47/91 (51%), Positives = 62/91 (68%)
Frame = +2 / +2
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D D +F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G FS W
Sbjct: 20 NDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGXXXFSIW 199
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLS 280
V+ HLYPF KGLMG+ RTPTIV VW+ LL+
Sbjct: 200 VILHLYPFLKGLMGKXNRTPTIVIVWSILLA 292
Score = 22.6 bits (43), Expect(2) = 7e-030
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2 / +3
Query: 278 SITISLLWVAINP 316
S+ SLLWV I+P
Sbjct: 288 SLIFSLLWVKIDP 326
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 311,509,909
Number of Sequences: 312970
Number of extensions: 5489361
Number of successful extensions: 81346
Number of sequences better than 1.0e-020: 99
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6786673440
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)