TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478084.2.1
(1395 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB882717.1|CB882717 HL02K11w HL Hordeum vulgare subsp. v... 245 e-104
gb|BM815962.1|BM815962 HB108B11_SK.ab1 HB Hordeum vulgare s... 184 4e-099
gb|BU978006.1|BU978006 HA12G16r HA Hordeum vulgare subsp. v... 218 2e-090
gb|BF256845.2|BF256845 HVSMEf0011C19f Hordeum vulgare seedl... 194 3e-074
gb|AL503281.1|AL503281 AL503281 Hordeum vulgare Barke roots... 141 4e-068
gb|BU994209.1|BU994209 HM06C21r HM Hordeum vulgare subsp. v... 250 2e-067
gb|CB859645.1|CB859645 HI11B21w HI Hordeum vulgare subsp. v... 250 2e-067
gb|CB880317.1|CB880317 HM06C21w HM Hordeum vulgare subsp. v... 250 2e-067
gb|BM444360.1|BM444360 EBem09_SQ004_O20_R embryo, 1 Day ger... 250 2e-067
gb|CB881920.1|CB881920 HM11E21w HM Hordeum vulgare subsp. v... 250 2e-067
gb|CB880111.1|CB880111 HM05I10w HM Hordeum vulgare subsp. v... 246 4e-066
gb|CB881379.1|CB881379 HM09K05w HM Hordeum vulgare subsp. v... 246 4e-066
gb|BI957745.1|BI957745 HVSMEn0010P23f Hordeum vulgare rachi... 141 7e-064
gb|BM815960.1|BM815960 HC05G03_T3.ab1 HC Hordeum vulgare su... 223 6e-063
gb|CA016620.1|CA016620 HV08A21u HV Hordeum vulgare subsp. v... 241 6e-063
gb|CB859459.1|CB859459 HI10I05w HI Hordeum vulgare subsp. v... 241 6e-063
gb|BU995764.1|BU995764 HM11E21r HM Hordeum vulgare subsp. v... 188 2e-059
gb|BF263303.2|BF263303 HV_CEa0006G07f Hordeum vulgare seedl... 141 5e-058
gb|AL500666.1|AL500666 AL500666 Hordeum vulgare Barke roots... 211 3e-057
gb|BU999255.1|BU999255 HI13O20r HI Hordeum vulgare subsp. v... 158 4e-055
gb|BG417675.1|BG417675 HVSMEk0019B08f Hordeum vulgare testa... 160 1e-054
gb|BU995236.1|BU995236 HM09K05r HM Hordeum vulgare subsp. v... 197 1e-049
gb|BM097912.2|BM097912 EBpi03_SQ002_A12_R pistil, 4 DPA, no... 188 3e-048
gb|BU977226.1|BU977226 HA11A22u HA Hordeum vulgare subsp. v... 163 2e-039
gb|CD663895.1|CD663895 UCRHV18_07aa08_b1 Drought-stressed D... 150 2e-035
gb|CK125579.1|CK125579 BES1824109b18 BES1824 Hordeum vulgar... 98 4e-034
gb|BI960627.1|BI960627 HVSMEn0025G22f Hordeum vulgare rachi... 88 2e-031
gb|BU977225.1|BU977225 HA11A22r HA Hordeum vulgare subsp. v... 135 6e-031
gb|CA018243.1|CA018243 HV08A21r HV Hordeum vulgare subsp. v... 78 2e-028
gb|BU996564.1|BU996564 HM14A08r HM Hordeum vulgare subsp. v... 77 6e-028
gb|BU994581.1|BU994581 HM07I10r HM Hordeum vulgare subsp. v... 81 1e-027
gb|BF257469.3|BF257469 HVSMEf0013A01f Hordeum vulgare seedl... 82 4e-024
gb|AV926476.1|AV926476 AV926476 K. Sato unpublished cDNA li... 71 6e-024
gb|AV931360.1|AV931360 AV931360 K. Sato unpublished cDNA li... 71 7e-024
>gb|CB882717.1|CB882717 HL02K11w HL Hordeum vulgare subsp. vulgare cDNA clone HL02K11
3-PRIME, mRNA sequence
Length = 629
Score = 245 bits (530), Expect(2) = e-104
Identities = 101/126 (80%), Positives = 107/126 (84%)
Frame = -1 / +2
Query: 657 PLXXXXXXXXXXXXXXXVIQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLG 478
PL IQAAL+ MD+ YCRSALD LE+QPDLSALVRGAHTFRCPNLG
Sbjct: 251 PLAVAGKVTGSLADGATTIQAALEVMDNEYCRSALDSLEMQPDLSALVRGAHTFRCPNLG 430
Query: 477 LTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFR 298
LTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSA+RDGSLSVAISLQAEHMEKFR
Sbjct: 431 LTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFR 610
Query: 297 KLIYDF 280
K+I+DF
Sbjct: 611 KMIFDF 628
Score = 186 bits (401), Expect(2) = 1e-078
Identities = 86/130 (66%), Positives = 90/130 (69%)
Frame = +2 / -3
Query: 281 KS*MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWMGR 460
KS + FRNFS+CSACSEMATDRLPSRLALGST TGRP PKSAS MGR
Sbjct: 627 KSKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*MGR 448
Query: 461 RTQLVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAAWITDXXXXXXXXXX 640
RTQLVSPRLGHRNVCAPRTSADRSGC SR SSA+RQY SI S+AAWI
Sbjct: 447 RTQLVSPRLGHRNVCAPRTSADRSGCISRESSAERQYSLSITSSAAWIVVAPSASEPVTL 268
Query: 641 XXXXXGVAVK 670
GVAVK
Sbjct: 267 PATASGVAVK 238
Score = 155 bits (334), Expect(2) = e-104
Identities = 64/79 (81%), Positives = 68/79 (86%)
Frame = -3 / +2
Query: 904 VAIFKLSRAELVRLRSQVPAREGAPRFSTYAVLAAHVWRCASLARGLPADQPTKLYCATD 725
V IFKL RA+L R R+Q+P EGAPR STYAVL AHVWRCASLARGL +QPTKLYCATD
Sbjct: 5 VRIFKLCRADLGRFRAQLPTGEGAPRSSTYAVLGAHVWRCASLARGLSPEQPTKLYCATD 184
Query: 724 GRQRLQPPLPEGYFGNVIF 668
GRQRLQP LPEGYFGNVIF
Sbjct: 185 GRQRLQPALPEGYFGNVIF 241
Score = 127 bits (273), Expect(2) = 1e-078
Identities = 56/78 (71%), Positives = 64/78 (82%)
Frame = +2 / -2
Query: 668 KDHVAEVALRKRRLQPLPPVRGAVQLGGLVGRQAARQGRAPPHVRRQHSVRAEPRRALAR 847
+D VAEVALR+R LQPLPPVRGAVQLGGL+ QA QGRAPPHVR +H V A PRRALAR
Sbjct: 241 EDDVAEVALRERGLQPLPPVRGAVQLGGLLWGQATGQGRAPPHVRPEHRVGAGPRRALAR 62
Query: 848 GDLRTEADELGAGELEDS 901
G+L EA E+GA +LED+
Sbjct: 61 GELGAEAAEVGAAQLEDA 8
Score = 125 bits (268), Expect(3) = 2e-048
Identities = 51/80 (63%), Positives = 53/80 (66%)
Frame = -2 / +3
Query: 623 WQRARP*SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXXX 444
W+ ARP SR RW WTT TA +RWT W CS TCRRWSA RTRSGAPT GSPAGCA
Sbjct: 285 WRTARPRSRRRWR*WTTSTAARRWTPWRCSLTCRRWSAARTRSGAPTSGSPAGCACPFTT 464
Query: 443 XXXXXXXXXSWAPAASPTRG 384
SWAPAAS TRG
Sbjct: 465 PTLAGAGPCSWAPAASRTRG 524
Score = 94.5 bits (200), Expect(2) = 5e-038
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = +3 / -3
Query: 729 VAQYSLVGWSAGRPRARDAHRHTCAASTAYVLNRGAPSRAGTCERRRTSSARESLKIAT 905
VAQYSLVG S RPRARDAHRHTCA STA VL+RGAPS G+ R+R SAR SLK+ T
Sbjct: 180 VAQYSLVGCSGDRPRARDAHRHTCAPSTA*VLDRGAPSPVGSWARKRPRSARHSLKMRT 4
Score = 87.2 bits (184), Expect(2) = 5e-038
Identities = 41/79 (51%), Positives = 44/79 (55%)
Frame = +1 / -2
Query: 280 EVVDELPELLHVLRLQRDXXXXXXXXXXXXXXXREPLVGDXXXXXXXXXXXXXVRVVDGQ 459
EV D LPELLH+L LQRD EPLV D V VV+GQ
Sbjct: 628 EVKDHLPELLHMLGLQRDGHRQAAVAAGAGEHEGEPLVRDAAGAHEHGPAPAKVGVVNGQ 449
Query: 460 AHPAGEPQVGAPERVRPAD 516
AHPAGEP+VGAPERVR AD
Sbjct: 448 AHPAGEPEVGAPERVRAAD 392
Score = 77.1 bits (162), Expect(3) = 2e-048
Identities = 28/36 (77%), Positives = 29/36 (80%)
Frame = -1 / +3
Query: 816 TLCWRRTCGGARPWRAACRPTSPPSCTAPRTGGSGC 709
T C RTCGGARPW AC +SPPSCTAPRTGGSGC
Sbjct: 93 TRCSGRTCGGARPWPVACPQSSPPSCTAPRTGGSGC 200
Score = 29.5 bits (58), Expect(3) = 2e-048
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +1
Query: 334 HLAAGGAHGEVPEAHL 287
HLAAG A+GEVPE L
Sbjct: 574 HLAAGRAYGEVPEDDL 621
>gb|BM815962.1|BM815962 HB108B11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB108B11_SK.ab1 similar to Anthranilate
N-benzoyltransferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 882
Score = 184 bits (396), Expect(6) = 4e-099
Identities = 76/91 (83%), Positives = 80/91 (87%)
Frame = -3 / +2
Query: 940 ALTSKPATPPTAVAIFKLSRAELVRLRSQVPAREGAPRFSTYAVLAAHVWRCASLARGLP 761
AL KPA PPTAV IFKL+R+EL RLRSQ+P EGAPRFSTYAVLAAHVWRC SLAR L
Sbjct: 389 ALGGKPAPPPTAVDIFKLTRSELGRLRSQLPTGEGAPRFSTYAVLAAHVWRCVSLARNLA 568
Query: 760 ADQPTKLYCATDGRQRLQPPLPEGYFGNVIF 668
+QPTKLYCATDGRQRLQPPLPEGYFGNVIF
Sbjct: 569 PEQPTKLYCATDGRQRLQPPLPEGYFGNVIF 661
Score = 137 bits (294), Expect(6) = 4e-099
Identities = 53/65 (81%), Positives = 57/65 (87%)
Frame = -3 / +2
Query: 1135 QHHVAGGFSGLHFINSWADLCRGVPIAGMPFIDRSLLRARDPPTPGYPHIEYQPAPAMLS 956
QHHVA G SGLHFINSW+DLCRGV IA MPFIDR+L+RARDP TP YPH+EYQPAPAMLS
Sbjct: 197 QHHVADGMSGLHFINSWSDLCRGVKIAVMPFIDRTLVRARDPSTPSYPHVEYQPAPAMLS 376
Query: 955 EPPQA 941
PQA
Sbjct: 377 SVPQA 391
Score = 115 bits (245), Expect(6) = 5e-063
Identities = 52/71 (73%), Positives = 56/71 (78%)
Frame = +3 / -1
Query: 729 VAQYSLVGWSAGRPRARDAHRHTCAASTAYVLNRGAPSRAGTCERRRTSSARESLKIATA 908
VAQYSLVG S R RAR+ R TCAASTAYVLNRGAPS G+CERRR SS R SLK++TA
Sbjct: 600 VAQYSLVGCSGARLRARETQRQTCAASTAYVLNRGAPSPVGSCERRRPSSERVSLKMSTA 421
Query: 909 VGGVAGLDVRA 941
VGG AGL RA
Sbjct: 420 VGGGAGLPPRA 388
Score = 107 bits (228), Expect(6) = 5e-063
Identities = 46/62 (74%), Positives = 47/62 (75%)
Frame = +3 / -1
Query: 948 GGSDSMAGAGWYSMCG*PGVGGSRARRSDRSMKGMPAIGTPRQRSAHELMKCSPEKPPAT 1127
G DSMAGAG YS CG* GV GSRAR RSMKGM AI TPRQRS HELMKC P+ P AT
Sbjct: 384 GTDDSMAGAG*YSTCG*DGVEGSRARTRVRSMKGMTAILTPRQRSDHELMKCKPDMPSAT 205
Query: 1128 WC 1133
WC
Sbjct: 204 WC 199
Score = 84.0 bits (177), Expect(2) = 8e-023
Identities = 38/79 (48%), Positives = 50/79 (63%)
Frame = +2 / -3
Query: 668 KDHVAEVALRKRRLQPLPPVRGAVQLGGLVGRQAARQGRAPPHVRRQHSVRAEPRRALAR 847
+D + +V +R LQPL P+ GA+QLGGL Q AR+G P + H + AEP R
Sbjct: 661 EDDIPKVTFWQRGLQPLSPIGGAIQLGGLFRSQVARKGDTAPDMCS*HCICAEPWRTFTC 482
Query: 848 GDLRTEADELGAGELEDSH 904
G+LRT+A +L AGELED H
Sbjct: 481 GELRTQAAKL*AGELEDVH 425
Score = 50.6 bits (104), Expect(6) = 4e-099
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = -1 / +3
Query: 555 LDYLELQPDLSALVRGAHTFRCP 487
LDYLE+QPDLSALVRGAHTF P
Sbjct: 774 LDYLEMQPDLSALVRGAHTFPLP 842
Score = 47.3 bits (97), Expect(2) = 8e-023
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +2 / -3
Query: 1037 VNEGHAGDRDAAAEVRPRVDEVQSGEAAGHVVL 1135
V+EGH D ++AAEVRPRVDEVQ+ A +VVL
Sbjct: 295 VDEGHDCDFNSAAEVRPRVDEVQARHAISNVVL 197
Score = 42.3 bits (86), Expect(6) = 5e-063
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2 / -3
Query: 488 GHRNVCAPRTSADRSGCSSR*S 553
G+ VCAPRT+ADRSGC SR*S
Sbjct: 841 GNGKVCAPRTNADRSGCISR*S 776
Score = 29.9 bits (59), Expect(6) = 4e-099
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / +1
Query: 498 FRCPNLGLTSW 466
FRCPNL LTSW
Sbjct: 832 FRCPNLRLTSW 864
Score = 28.6 bits (56), Expect(6) = 4e-099
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1 / +2
Query: 657 PLXXXXXXXXXXXXXXXVIQAALDRMDDGYCRSA 556
PL VIQ ALDRM YC SA
Sbjct: 671 PLAEAGKVTSGLAEGAAVIQGALDRMTSDYCXSA 772
Score = 26.3 bits (51), Expect(6) = 4e-099
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / +2
Query: 1196 LLVLQVTHFKWGFFFFGEGM 1137
L++LQVT+FK G G GM
Sbjct: 137 LILLQVTYFKCGGVSLGVGM 196
Score = 23.5 bits (45), Expect(6) = 5e-063
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1 / -1
Query: 1150 KKKKPHLKWVTWS 1188
++ PHLK VTWS
Sbjct: 183 RETPPHLK*VTWS 145
Score = 23.5 bits (45), Expect(6) = 5e-063
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1 / -1
Query: 454 GQAHPAGEPQVGAPER 501
G+ PAGE +VGA E+
Sbjct: 876 GRRTPAGEXKVGATEK 829
Score = 23.1 bits (44), Expect(6) = 5e-063
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +2 / -1
Query: 557 ADRQYPSSIRSNAAWITDXXXXXXXXXXXXXXXGVAVK 670
AD Q I S+A W+T GVAVK
Sbjct: 771 ADXQ*SLVILSSAPWMTAAPSASPLVTLPASASGVAVK 658
>gb|BU978006.1|BU978006 HA12G16r HA Hordeum vulgare subsp. vulgare cDNA clone HA12G16
5-PRIME, mRNA sequence
Length = 543
Score = 218 bits (471), Expect(2) = 2e-090
Identities = 90/114 (78%), Positives = 95/114 (83%)
Frame = -1 / +3
Query: 657 PLXXXXXXXXXXXXXXXVIQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLG 478
PL VIQ ALDRM YC+SALDYLE+QPDLSALVRGAHTFRCPNLG
Sbjct: 201 PLAEAGKVTSGLAEGAAVIQGALDRMTSDYCQSALDYLEMQPDLSALVRGAHTFRCPNLG 380
Query: 477 LTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAE 316
LTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSA++DGSLS+AISLQAE
Sbjct: 381 LTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASKDGSLSIAISLQAE 542
Score = 142 bits (305), Expect(2) = 7e-048
Identities = 67/118 (56%), Positives = 72/118 (61%)
Frame = +2 / -3
Query: 317 SACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWMGRRTQLVSPRLGHR 496
SAC+EMA DRLPS LALG T TG P PKSASW+GRRTQLV PRLGHR
Sbjct: 541 SACNEMAMDRLPSLLALGRTNASPSYAMPPGPMNTGLPQPKSASWIGRRTQLVRPRLGHR 362
Query: 497 NVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAAWITDXXXXXXXXXXXXXXXGVAVK 670
VCAPRT+ADRSGC SR*S AD Q I S+A W+T GVAVK
Sbjct: 361 KVCAPRTNADRSGCISR*SRADWQ*SLVILSSAPWMTAAPSASPLVTLPASASGVAVK 188
Score = 135 bits (289), Expect(2) = 2e-090
Identities = 53/58 (91%), Positives = 54/58 (93%)
Frame = -3 / +3
Query: 841 EGAPRFSTYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVIF 668
EGAPRFSTYAVLAAHVWRC SLAR L +QPTKLYCATDGRQRLQPPLPEGYFGNVIF
Sbjct: 18 EGAPRFSTYAVLAAHVWRCVSLARNLAPEQPTKLYCATDGRQRLQPPLPEGYFGNVIF 191
Score = 93.2 bits (197), Expect(2) = 2e-023
Identities = 41/81 (50%), Positives = 45/81 (55%)
Frame = -2 / +1
Query: 626 GWQRARP*SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXX 447
GW++ + SR R TG TA Q WTTW CSRTC+ WS T SGAPT SPAGCA
Sbjct: 232 GWRKEQRSSRER*TG*LATTANQPWTTWRCSRTCQHWSVEHTLSGAPTSASPAGCACRST 411
Query: 446 XXXXXXXXXXSWAPAASPTRG 384
SW AAS TRG
Sbjct: 412 TPILAGGGRCSWVLAASRTRG 474
Score = 69.3 bits (145), Expect(2) = 7e-048
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = +3 / -3
Query: 729 VAQYSLVGWSAGRPRARDAHRHTCAASTAYVLNRGAPS 842
VAQYSLVG S R RAR+ R TCAASTAYVLNRGAPS
Sbjct: 130 VAQYSLVGCSGARLRARETQRQTCAASTAYVLNRGAPS 17
Score = 36.8 bits (74), Expect(2) = 2e-023
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -2 / +2
Query: 827 VQHVRCAGGARVAVRVPGARPAGRPAHQAVLRH 729
VQHV A +A+ +P A+P AHQAVLRH
Sbjct: 32 VQHVCSASCTCLALCLPCAQPGSGTAHQAVLRH 130
>gb|BF256845.2|BF256845 HVSMEf0011C19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011C19f, mRNA sequence
Length = 582
Score = 194 bits (418), Expect(2) = 3e-074
Identities = 83/125 (66%), Positives = 89/125 (71%)
Frame = -1 / +3
Query: 657 PLXXXXXXXXXXXXXXXVIQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLG 478
PL VIQ ALDRM YC+SALDYLE+QPDLSALVRGAHTFRCPNLG
Sbjct: 147 PLAEAGKVTSGLAEGAAVIQGALDRMTGDYCQSALDYLEMQPDLSALVRGAHTFRCPNLG 326
Query: 477 LTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFR 298
LTSWVRLPIHDADFGWGRPVFMGPGGI G + R G+ + SLQAEHMEKFR
Sbjct: 327 LTSWVRLPIHDADFGWGRPVFMGPGGIRTRGWRSSSRARARTGACPLPSSLQAEHMEKFR 506
Query: 297 KLIYD 283
+LI D
Sbjct: 507 ELILD 521
Score = 114 bits (243), Expect(4) = 1e-040
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = +2 / -3
Query: 419 TGRPHPKSASWMGRRTQLVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAA 598
TG P PKSASW+GRRTQLV PRLGHR VCAPRT+ADRSGC SR*S AD Q I S+A
Sbjct: 385 TGLPQPKSASWIGRRTQLVRPRLGHRKVCAPRTNADRSGCISR*SRADWQ*SPVILSSAP 206
Query: 599 WITDXXXXXXXXXXXXXXXGVAVK 670
W+T GVAVK
Sbjct: 205 WMTAAPSASPLVTLPASASGVAVK 134
Score = 105 bits (224), Expect(2) = 3e-074
Identities = 40/45 (88%), Positives = 41/45 (91%)
Frame = -3 / +3
Query: 802 AHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVIF 668
AHVWRC SLAR L +QPTKLYCATDGRQRLQPPLPEGYFGNVIF
Sbjct: 3 AHVWRCVSLARNLAPEQPTKLYCATDGRQRLQPPLPEGYFGNVIF 137
Score = 86.8 bits (183), Expect(4) = 7e-032
Identities = 38/77 (49%), Positives = 42/77 (54%)
Frame = -2 / +1
Query: 626 GWQRARP*SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXX 447
GW++ + SR R TG TA Q WTTW CSRTC+ WS T SGAPT SPAGCA
Sbjct: 178 GWRKEQRSSRER*TG*LATTANQPWTTWRCSRTCQHWSVEHTLSGAPTSASPAGCACRST 357
Query: 446 XXXXXXXXXXSWAPAAS 396
SW AAS
Sbjct: 358 TPILAGGGRCSWVLAAS 408
Score = 50.6 bits (104), Expect(4) = 1e-040
Identities = 21/42 (50%), Positives = 28/42 (66%)
Frame = +2 / -2
Query: 668 KDHVAEVALRKRRLQPLPPVRGAVQLGGLVGRQAARQGRAPP 793
+D + +V +R LQPL P+ GA+QLGGL Q AR+G A P
Sbjct: 137 EDDIPKVTFWQRGLQPLSPIGGAIQLGGLFRSQVARKGDAAP 12
Score = 41.8 bits (85), Expect(4) = 7e-032
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = -1 / +2
Query: 393 YEGLAFVLPSANRDGSLSVAI 331
YEGLAFVLPSA++D SLS+AI
Sbjct: 410 YEGLAFVLPSASKDRSLSIAI 472
Score = 37.7 bits (76), Expect(4) = 7e-032
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1 / +1
Query: 792 GGARPWRAACRPTSPPSCTAPRTGGSGC 709
G A P RA SPPSC AP G +GC
Sbjct: 13 GAASPLRATWLRNSPPSCIAPPMGDNGC 96
Score = 34.1 bits (68), Expect(4) = 1e-040
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1 / -2
Query: 283 VVDELPELLHVLRLQR 330
+ D+LPELLHVLRLQR
Sbjct: 521 IEDQLPELLHVLRLQR 474
Score = 27.2 bits (53), Expect(4) = 7e-032
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3 / +2
Query: 325 AGGAHGEVPEAHLR 284
AGGAHGEVP A R
Sbjct: 479 AGGAHGEVPGADPR 520
Score = 24.4 bits (47), Expect(4) = 1e-040
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2 / -1
Query: 326 SEMATDRLPSRLALGST 376
++MA DRL S LALG T
Sbjct: 477 TKMAMDRLRSLLALGRT 427
>gb|AL503281.1|AL503281 AL503281 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H10T 5', mRNA sequence
Length = 700
Score = 141 bits (302), Expect(3) = 4e-068
Identities = 54/65 (83%), Positives = 58/65 (89%)
Frame = -3 / +1
Query: 1135 QHHVAGGFSGLHFINSWADLCRGVPIAGMPFIDRSLLRARDPPTPGYPHIEYQPAPAMLS 956
QHHVA G SGLHFINSW+DLCRGV IA MPFIDR+L+RARDPPTP YPH+EYQPAPAMLS
Sbjct: 355 QHHVADGMSGLHFINSWSDLCRGVKIAVMPFIDRTLVRARDPPTPSYPHVEYQPAPAMLS 534
Query: 955 EPPQA 941
PQA
Sbjct: 535 SVPQA 549
Score = 111 bits (236), Expect(3) = 2e-048
Identities = 47/62 (75%), Positives = 48/62 (77%)
Frame = +3 / -3
Query: 948 GGSDSMAGAGWYSMCG*PGVGGSRARRSDRSMKGMPAIGTPRQRSAHELMKCSPEKPPAT 1127
G DSMAGAG YS CG* GVGGSRAR RSMKGM AI TPRQRS HELMKC P+ P AT
Sbjct: 542 GTDDSMAGAG*YSTCG*DGVGGSRARTRVRSMKGMTAILTPRQRSDHELMKCKPDMPSAT 363
Query: 1128 WC 1133
WC
Sbjct: 362 WC 357
Score = 88.1 bits (186), Expect(3) = 4e-068
Identities = 37/45 (82%), Positives = 40/45 (88%)
Frame = -3 / +2
Query: 922 ATPPTAVAIFKLSRAELVRLRSQVPAREGAPRFSTYAVLAAHVWR 788
A PPTAV IFKL+R+EL RLRSQ+P EGAPRFSTYAVLAAHVWR
Sbjct: 566 APPPTAVDIFKLTRSELGRLRSQLPTGEGAPRFSTYAVLAAHVWR 700
Score = 82.2 bits (173), Expect(3) = 2e-048
Identities = 36/47 (76%), Positives = 39/47 (82%)
Frame = +3 / -2
Query: 789 RHTCAASTAYVLNRGAPSRAGTCERRRTSSARESLKIATAVGGVAGL 929
R TCAASTAYVLNRGAPS G+CERRR SS R SLK++TAVGG A L
Sbjct: 699 RQTCAASTAYVLNRGAPSPVGSCERRRPSSERVSLKMSTAVGGGAWL 559
Score = 68.9 bits (144), Expect(3) = 4e-068
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -2 / +1
Query: 1262 PPGDLERLIPTVDFTDDISSFPLLVLQVTHFKWGFFFFGEGM 1137
P DL+RLIP VD+TDDISSFPLLVLQVT+FK G G GM
Sbjct: 229 PTMDLKRLIPPVDYTDDISSFPLLVLQVTYFKCGGVSLGVGM 354
Score = 38.6 bits (78), Expect(3) = 2e-048
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +1 / -3
Query: 1150 KKKKPHLKWVTWSTSSGKEEMSSVKST 1230
++ PHLK VT ST SGKE+MSSV ST
Sbjct: 341 RETPPHLK*VT*STRSGKEDMSSV*ST 261
>gb|BU994209.1|BU994209 HM06C21r HM Hordeum vulgare subsp. vulgare cDNA clone HM06C21
5-PRIME, mRNA sequence
Length = 603
Score = 250 bits (541), Expect(2) = 2e-067
Identities = 102/110 (92%), Positives = 108/110 (98%)
Frame = -1 / +1
Query: 603 IQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 424
IQAAL+ MD+ YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR
Sbjct: 67 IQAALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 246
Query: 423 PVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF*S 274
PVFMGPGGIAYEGLAFVLPSA+RDGSLSVAISLQAEHMEKFRK+I+DF*S
Sbjct: 247 PVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMIFDF*S 396
Score = 188 bits (406), Expect(2) = 2e-050
Identities = 84/110 (76%), Positives = 88/110 (80%)
Frame = +2 / -2
Query: 275 DQKS*MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWM 454
DQKS + FRNFS+CSACSEMATDRLPSRLALGST TGRP PKSAS M
Sbjct: 395 DQKSKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*M 216
Query: 455 GRRTQLVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAAWI 604
GRRTQLVSPRLGHRNVCAPRTSADRSGC SR*SSA+RQY SI S+AAWI
Sbjct: 215 GRRTQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAAWI 66
Score = 128 bits (274), Expect(3) = 1e-035
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = -2 / +2
Query: 623 WQRARP*SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXXX 444
W+ ARP SR RW WTT TA +RWTTW CS TCRRWSA RTRSGAPT GSPAGCA
Sbjct: 47 WRTARPRSRRRWR*WTTSTAARRWTTWRCSLTCRRWSAARTRSGAPTSGSPAGCACPFTT 226
Query: 443 XXXXXXXXXSWAPAASPTRG 384
SWAPAAS TRG
Sbjct: 227 PTLAGAGPCSWAPAASRTRG 286
Score = 35.9 bits (72), Expect(3) = 1e-035
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -3 / +3
Query: 334 HLAAGGAHGEVPEAHLRLLISNSSP 260
HLAAG A+GEVPE L LLI +P
Sbjct: 336 HLAAGRAYGEVPEDDL*LLIKGITP 410
Score = 31.8 bits (63), Expect(2) = 2e-050
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / -3
Query: 149 RNGKVCRNYV*NQRI 193
R GK CRNYV NQRI
Sbjct: 517 REGKTCRNYVCNQRI 473
Score = 26.3 bits (51), Expect(2) = 2e-067
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / +2
Query: 190 SLISHIVPAHFSVPACPL 137
SLI+H+VPA F P L
Sbjct: 476 SLITHVVPARFPFPLSTL 529
Score = 24.9 bits (48), Expect(3) = 1e-035
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +1
Query: 191 FFDFTHSSCT 162
FFD+T SSCT
Sbjct: 475 FFDYTRSSCT 504
>gb|CB859645.1|CB859645 HI11B21w HI Hordeum vulgare subsp. vulgare cDNA clone HI11B21
3-PRIME, mRNA sequence
Length = 562
Score = 250 bits (541), Expect(2) = 2e-067
Identities = 102/110 (92%), Positives = 108/110 (98%)
Frame = -1 / -1
Query: 603 IQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 424
IQAAL+ MD+ YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR
Sbjct: 559 IQAALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 380
Query: 423 PVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF*S 274
PVFMGPGGIAYEGLAFVLPSA+RDGSLSVAISLQAEHMEKFRK+I+DF*S
Sbjct: 379 PVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMIFDF*S 230
Score = 188 bits (406), Expect(2) = 2e-050
Identities = 84/110 (76%), Positives = 88/110 (80%)
Frame = +2 / +3
Query: 275 DQKS*MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWM 454
DQKS + FRNFS+CSACSEMATDRLPSRLALGST TGRP PKSAS M
Sbjct: 231 DQKSKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*M 410
Query: 455 GRRTQLVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAAWI 604
GRRTQLVSPRLGHRNVCAPRTSADRSGC SR*SSA+RQY SI S+AAWI
Sbjct: 411 GRRTQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAAWI 560
Score = 117 bits (251), Expect(3) = 1e-032
Identities = 48/73 (65%), Positives = 49/73 (67%)
Frame = -2 / -2
Query: 602 SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXXXXXXXXXX 423
SR RW WTT TA +RWTTW CS TCRRWSA RTRSGAPT GSPAGCA
Sbjct: 558 SRRRWR*WTTSTAARRWTTWRCSLTCRRWSAARTRSGAPTSGSPAGCACPFTTPTLAGAG 379
Query: 422 XXSWAPAASPTRG 384
SWAPAAS TRG
Sbjct: 378 PCSWAPAASRTRG 340
Score = 35.9 bits (72), Expect(3) = 1e-032
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -3 / -3
Query: 334 HLAAGGAHGEVPEAHLRLLISNSSP 260
HLAAG A+GEVPE L LLI +P
Sbjct: 290 HLAAGRAYGEVPEDDL*LLIKGITP 216
Score = 31.8 bits (63), Expect(2) = 2e-050
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / +1
Query: 149 RNGKVCRNYV*NQRI 193
R GK CRNYV NQRI
Sbjct: 109 REGKTCRNYVCNQRI 153
Score = 26.3 bits (51), Expect(2) = 2e-067
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / -2
Query: 190 SLISHIVPAHFSVPACPL 137
SLI+H+VPA F P L
Sbjct: 150 SLITHVVPARFPFPLSTL 97
Score = 24.9 bits (48), Expect(3) = 1e-032
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -1
Query: 191 FFDFTHSSCT 162
FFD+T SSCT
Sbjct: 151 FFDYTRSSCT 122
>gb|CB880317.1|CB880317 HM06C21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06C21
3-PRIME, mRNA sequence
Length = 560
Score = 250 bits (541), Expect(2) = 2e-067
Identities = 102/110 (92%), Positives = 108/110 (98%)
Frame = -1 / -3
Query: 603 IQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 424
IQAAL+ MD+ YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR
Sbjct: 537 IQAALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 358
Query: 423 PVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF*S 274
PVFMGPGGIAYEGLAFVLPSA+RDGSLSVAISLQAEHMEKFRK+I+DF*S
Sbjct: 357 PVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMIFDF*S 208
Score = 188 bits (406), Expect(2) = 2e-050
Identities = 84/110 (76%), Positives = 88/110 (80%)
Frame = +2 / +2
Query: 275 DQKS*MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWM 454
DQKS + FRNFS+CSACSEMATDRLPSRLALGST TGRP PKSAS M
Sbjct: 209 DQKSKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*M 388
Query: 455 GRRTQLVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAAWI 604
GRRTQLVSPRLGHRNVCAPRTSADRSGC SR*SSA+RQY SI S+AAWI
Sbjct: 389 GRRTQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAAWI 538
Score = 128 bits (274), Expect(3) = 1e-035
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = -2 / -1
Query: 623 WQRARP*SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXXX 444
W+ ARP SR RW WTT TA +RWTTW CS TCRRWSA RTRSGAPT GSPAGCA
Sbjct: 557 WRTARPRSRRRWR*WTTSTAARRWTTWRCSLTCRRWSAARTRSGAPTSGSPAGCACPFTT 378
Query: 443 XXXXXXXXXSWAPAASPTRG 384
SWAPAAS TRG
Sbjct: 377 PTLAGAGPCSWAPAASRTRG 318
Score = 35.9 bits (72), Expect(3) = 1e-035
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -3 / -2
Query: 334 HLAAGGAHGEVPEAHLRLLISNSSP 260
HLAAG A+GEVPE L LLI +P
Sbjct: 268 HLAAGRAYGEVPEDDL*LLIKGITP 194
Score = 31.8 bits (63), Expect(2) = 2e-050
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / +3
Query: 149 RNGKVCRNYV*NQRI 193
R GK CRNYV NQRI
Sbjct: 87 REGKTCRNYVCNQRI 131
Score = 26.3 bits (51), Expect(2) = 2e-067
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / -1
Query: 190 SLISHIVPAHFSVPACPL 137
SLI+H+VPA F P L
Sbjct: 128 SLITHVVPARFPFPLSTL 75
Score = 24.9 bits (48), Expect(3) = 1e-035
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -3
Query: 191 FFDFTHSSCT 162
FFD+T SSCT
Sbjct: 129 FFDYTRSSCT 100
>gb|BM444360.1|BM444360 EBem09_SQ004_O20_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_O20 5', mRNA sequence
Length = 555
Score = 250 bits (541), Expect(2) = 2e-067
Identities = 102/110 (92%), Positives = 108/110 (98%)
Frame = -1 / +1
Query: 603 IQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 424
IQAAL+ MD+ YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR
Sbjct: 28 IQAALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 207
Query: 423 PVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF*S 274
PVFMGPGGIAYEGLAFVLPSA+RDGSLSVAISLQAEHMEKFRK+I+DF*S
Sbjct: 208 PVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMIFDF*S 357
Score = 188 bits (406), Expect(2) = 2e-050
Identities = 84/110 (76%), Positives = 88/110 (80%)
Frame = +2 / -2
Query: 275 DQKS*MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWM 454
DQKS + FRNFS+CSACSEMATDRLPSRLALGST TGRP PKSAS M
Sbjct: 356 DQKSKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*M 177
Query: 455 GRRTQLVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAAWI 604
GRRTQLVSPRLGHRNVCAPRTSADRSGC SR*SSA+RQY SI S+AAWI
Sbjct: 176 GRRTQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAAWI 27
Score = 128 bits (274), Expect(3) = 6e-035
Identities = 52/80 (65%), Positives = 54/80 (67%)
Frame = -2 / +2
Query: 623 WQRARP*SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXXX 444
W+ ARP SR RW WTT TA +RWTTW CS TCRRWSA RTRSGAPT GSPAGCA
Sbjct: 8 WRTARPRSRRRWR*WTTSTAARRWTTWRCSLTCRRWSAARTRSGAPTSGSPAGCACPFTT 187
Query: 443 XXXXXXXXXSWAPAASPTRG 384
SWAPAAS TRG
Sbjct: 188 PTLAGAGPCSWAPAASRTRG 247
Score = 33.1 bits (66), Expect(3) = 6e-035
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -3 / +3
Query: 334 HLAAGGAHGEVPEAHLRLLI 275
HLAAG A+GEVPE L LLI
Sbjct: 297 HLAAGRAYGEVPEDDL*LLI 356
Score = 31.8 bits (63), Expect(2) = 2e-050
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / -3
Query: 149 RNGKVCRNYV*NQRI 193
R GK CRNYV NQRI
Sbjct: 478 REGKTCRNYVCNQRI 434
Score = 26.3 bits (51), Expect(2) = 2e-067
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / +2
Query: 190 SLISHIVPAHFSVPACPL 137
SLI+H+VPA F P L
Sbjct: 437 SLITHVVPARFPFPLSTL 490
Score = 24.9 bits (48), Expect(3) = 6e-035
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +1
Query: 191 FFDFTHSSCT 162
FFD+T SSCT
Sbjct: 436 FFDYTRSSCT 465
>gb|CB881920.1|CB881920 HM11E21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11E21
3-PRIME, mRNA sequence
Length = 528
Score = 250 bits (541), Expect(2) = 2e-067
Identities = 102/110 (92%), Positives = 108/110 (98%)
Frame = -1 / -1
Query: 603 IQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 424
IQAAL+ MD+ YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR
Sbjct: 522 IQAALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 343
Query: 423 PVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF*S 274
PVFMGPGGIAYEGLAFVLPSA+RDGSLSVAISLQAEHMEKFRK+I+DF*S
Sbjct: 342 PVFMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMIFDF*S 193
Score = 188 bits (406), Expect(2) = 2e-050
Identities = 84/110 (76%), Positives = 88/110 (80%)
Frame = +2 / +2
Query: 275 DQKS*MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWM 454
DQKS + FRNFS+CSACSEMATDRLPSRLALGST TGRP PKSAS M
Sbjct: 194 DQKSKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*M 373
Query: 455 GRRTQLVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAAWI 604
GRRTQLVSPRLGHRNVCAPRTSADRSGC SR*SSA+RQY SI S+AAWI
Sbjct: 374 GRRTQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAAWI 523
Score = 119 bits (254), Expect(3) = 5e-033
Identities = 49/75 (65%), Positives = 50/75 (66%)
Frame = -2 / -2
Query: 608 P*SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXXXXXXXX 429
P SR RW WTT TA +RWTTW CS TCRRWSA RTRSGAPT GSPAGCA
Sbjct: 527 PRSRRRWR*WTTSTAARRWTTWRCSLTCRRWSAARTRSGAPTSGSPAGCACPFTTPTLAG 348
Query: 428 XXXXSWAPAASPTRG 384
SWAPAAS TRG
Sbjct: 347 AGPCSWAPAASRTRG 303
Score = 35.9 bits (72), Expect(3) = 5e-033
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -3 / -3
Query: 334 HLAAGGAHGEVPEAHLRLLISNSSP 260
HLAAG A+GEVPE L LLI +P
Sbjct: 253 HLAAGRAYGEVPEDDL*LLIKGITP 179
Score = 31.8 bits (63), Expect(2) = 2e-050
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / +3
Query: 149 RNGKVCRNYV*NQRI 193
R GK CRNYV NQRI
Sbjct: 72 REGKTCRNYVCNQRI 116
Score = 26.3 bits (51), Expect(2) = 2e-067
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / -2
Query: 190 SLISHIVPAHFSVPACPL 137
SLI+H+VPA F P L
Sbjct: 113 SLITHVVPARFPFPLSTL 60
Score = 24.9 bits (48), Expect(3) = 5e-033
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -1
Query: 191 FFDFTHSSCT 162
FFD+T SSCT
Sbjct: 114 FFDYTRSSCT 85
>gb|CB880111.1|CB880111 HM05I10w HM Hordeum vulgare subsp. vulgare cDNA clone HM05I10
3-PRIME, mRNA sequence
Length = 573
Score = 246 bits (532), Expect(2) = 4e-066
Identities = 100/108 (92%), Positives = 106/108 (98%)
Frame = -1 / -3
Query: 597 AALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPV 418
AAL+ MD+ YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPV
Sbjct: 571 AALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPV 392
Query: 417 FMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF*S 274
FMGPGGIAYEGLAFVLPSA+RDGSLSVAISLQAEHMEKFRK+I+DF*S
Sbjct: 391 FMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMIFDF*S 248
Score = 182 bits (391), Expect(2) = 2e-048
Identities = 82/108 (75%), Positives = 86/108 (79%)
Frame = +2 / +3
Query: 275 DQKS*MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWM 454
DQKS + FRNFS+CSACSEMATDRLPSRLALGST TGRP PKSAS M
Sbjct: 249 DQKSKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*M 428
Query: 455 GRRTQLVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAA 598
GRRTQLVSPRLGHRNVCAPRTSADRSGC SR*SSA+RQY SI S+AA
Sbjct: 429 GRRTQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSAA 572
Score = 116 bits (247), Expect(3) = 4e-032
Identities = 47/72 (65%), Positives = 48/72 (66%)
Frame = -2 / -1
Query: 599 RPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXXXXXXXXXXX 420
R RW WTT TA +RWTTW CS TCRRWSA RTRSGAPT GSPAGCA
Sbjct: 573 RRRWR*WTTSTAARRWTTWRCSLTCRRWSAARTRSGAPTSGSPAGCACPFTTPTLAGAGP 394
Query: 419 XSWAPAASPTRG 384
SWAPAAS TRG
Sbjct: 393 CSWAPAASRTRG 358
Score = 35.9 bits (72), Expect(3) = 4e-032
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -3 / -2
Query: 334 HLAAGGAHGEVPEAHLRLLISNSSP 260
HLAAG A+GEVPE L LLI +P
Sbjct: 308 HLAAGRAYGEVPEDDL*LLIKGITP 234
Score = 31.8 bits (63), Expect(2) = 2e-048
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / +1
Query: 149 RNGKVCRNYV*NQRI 193
R GK CRNYV NQRI
Sbjct: 127 REGKTCRNYVCNQRI 171
Score = 26.3 bits (51), Expect(2) = 4e-066
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / -1
Query: 190 SLISHIVPAHFSVPACPL 137
SLI+H+VPA F P L
Sbjct: 168 SLITHVVPARFPFPLSTL 115
Score = 24.9 bits (48), Expect(3) = 4e-032
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -3
Query: 191 FFDFTHSSCT 162
FFD+T SSCT
Sbjct: 169 FFDYTRSSCT 140
>gb|CB881379.1|CB881379 HM09K05w HM Hordeum vulgare subsp. vulgare cDNA clone HM09K05
3-PRIME, mRNA sequence
Length = 549
Score = 246 bits (532), Expect(2) = 4e-066
Identities = 100/108 (92%), Positives = 106/108 (98%)
Frame = -1 / -1
Query: 597 AALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPV 418
AAL+ MD+ YCRSALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPV
Sbjct: 549 AALEVMDNEYCRSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPV 370
Query: 417 FMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF*S 274
FMGPGGIAYEGLAFVLPSA+RDGSLSVAISLQAEHMEKFRK+I+DF*S
Sbjct: 369 FMGPGGIAYEGLAFVLPSASRDGSLSVAISLQAEHMEKFRKMIFDF*S 226
Score = 180 bits (387), Expect(2) = 7e-048
Identities = 81/107 (75%), Positives = 85/107 (79%)
Frame = +2 / +2
Query: 275 DQKS*MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWM 454
DQKS + FRNFS+CSACSEMATDRLPSRLALGST TGRP PKSAS M
Sbjct: 227 DQKSKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*M 406
Query: 455 GRRTQLVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNA 595
GRRTQLVSPRLGHRNVCAPRTSADRSGC SR*SSA+RQY SI S+A
Sbjct: 407 GRRTQLVSPRLGHRNVCAPRTSADRSGCISR*SSAERQYSLSITSSA 547
Score = 114 bits (244), Expect(3) = 1e-031
Identities = 46/70 (65%), Positives = 47/70 (67%)
Frame = -2 / -2
Query: 593 RWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXXXXXXXXXXXXS 414
RW WTT TA +RWTTW CS TCRRWSA RTRSGAPT GSPAGCA S
Sbjct: 545 RWR*WTTSTAARRWTTWRCSLTCRRWSAARTRSGAPTSGSPAGCACPFTTPTLAGAGPCS 366
Query: 413 WAPAASPTRG 384
WAPAAS TRG
Sbjct: 365 WAPAASRTRG 336
Score = 35.9 bits (72), Expect(3) = 1e-031
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -3 / -3
Query: 334 HLAAGGAHGEVPEAHLRLLISNSSP 260
HLAAG A+GEVPE L LLI +P
Sbjct: 286 HLAAGRAYGEVPEDDL*LLIKGITP 212
Score = 31.8 bits (63), Expect(2) = 7e-048
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / +3
Query: 149 RNGKVCRNYV*NQRI 193
R GK CRNYV NQRI
Sbjct: 105 REGKTCRNYVCNQRI 149
Score = 26.3 bits (51), Expect(2) = 4e-066
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / -2
Query: 190 SLISHIVPAHFSVPACPL 137
SLI+H+VPA F P L
Sbjct: 146 SLITHVVPARFPFPLSTL 93
Score = 24.9 bits (48), Expect(3) = 1e-031
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -1
Query: 191 FFDFTHSSCT 162
FFD+T SSCT
Sbjct: 147 FFDYTRSSCT 118
>gb|BI957745.1|BI957745 HVSMEn0010P23f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010P23f,
mRNA sequence
Length = 648
Score = 141 bits (302), Expect(3) = 7e-064
Identities = 54/65 (83%), Positives = 58/65 (89%)
Frame = -3 / +3
Query: 1135 QHHVAGGFSGLHFINSWADLCRGVPIAGMPFIDRSLLRARDPPTPGYPHIEYQPAPAMLS 956
QHHVA G SGLHFINSW+DLCRGV IA MPFIDR+L+RARDPPTP YPH+EYQPAPAMLS
Sbjct: 330 QHHVADGMSGLHFINSWSDLCRGVKIAVMPFIDRTLVRARDPPTPSYPHVEYQPAPAMLS 509
Query: 955 EPPQA 941
PQA
Sbjct: 510 SVPQA 524
Score = 111 bits (236), Expect(3) = 2e-044
Identities = 47/62 (75%), Positives = 48/62 (77%)
Frame = +3 / -3
Query: 948 GGSDSMAGAGWYSMCG*PGVGGSRARRSDRSMKGMPAIGTPRQRSAHELMKCSPEKPPAT 1127
G DSMAGAG YS CG* GVGGSRAR RSMKGM AI TPRQRS HELMKC P+ P AT
Sbjct: 517 GTDDSMAGAG*YSTCG*DGVGGSRARTRVRSMKGMTAILTPRQRSDHELMKCKPDMPSAT 338
Query: 1128 WC 1133
WC
Sbjct: 337 WC 332
Score = 73.9 bits (155), Expect(3) = 7e-064
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = -3 / +3
Query: 940 ALTSKPATPPTAVAIFKLSRAELVRLRSQVPAREGAPRFSTY 815
AL KP PPTAV IFKL+R+EL RLRSQ+P EGAPRFSTY
Sbjct: 522 ALGGKPVPPPTAVDIFKLTRSELARLRSQLPTGEGAPRFSTY 647
Score = 68.9 bits (144), Expect(3) = 7e-064
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -2 / +3
Query: 1262 PPGDLERLIPTVDFTDDISSFPLLVLQVTHFKWGFFFFGEGM 1137
P DL+RLIP VD+TDDISSFPLLVLQVT+FK G G GM
Sbjct: 204 PTMDLKRLIPPVDYTDDISSFPLLVLQVTYFKCGGVSLGVGM 329
Score = 68.9 bits (144), Expect(3) = 2e-044
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +3 / -3
Query: 816 YVLNRGAPSRAGTCERRRTSSARESLKIATAVGGVAGLDVRA 941
YVLNRGAPS G+CERRR SS R SLK++TAVGG GL RA
Sbjct: 646 YVLNRGAPSPVGSCERRRASSERVSLKMSTAVGGGTGLPPRA 521
Score = 38.6 bits (78), Expect(3) = 2e-044
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +1 / -3
Query: 1150 KKKKPHLKWVTWSTSSGKEEMSSVKST 1230
++ PHLK VT ST SGKE+MSSV ST
Sbjct: 316 RETPPHLK*VT*STRSGKEDMSSV*ST 236
>gb|BM815960.1|BM815960 HC05G03_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC05G03_T3.ab1 similar to Anthranilate
N-benzoyltransferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 850
Score = 223 bits (482), Expect(2) = 6e-063
Identities = 90/116 (77%), Positives = 97/116 (83%)
Frame = -3 / +2
Query: 1135 QHHVAGGFSGLHFINSWADLCRGVPIAGMPFIDRSLLRARDPPTPGYPHIEYQPAPAMLS 956
QHHVA GFSGLHFINSWADLCRGVPIA MPFIDR+LLRARDPPTP +PHIEYQPAPAML
Sbjct: 92 QHHVADGFSGLHFINSWADLCRGVPIAVMPFIDRTLLRARDPPTPSHPHIEYQPAPAMLD 271
Query: 955 EPPQAALTSKPATPPTAVAIFKLSRAELVRLRSQVPAREGAPRFSTYAVLAAHVWR 788
ALT+KP PPTAV IFKL RA+L RLR+Q+P EGAPRF TYAVL HVW+
Sbjct: 272 SEEPQALTAKPEAPPTAVDIFKLCRADLGRLRAQLPTGEGAPRFITYAVLGVHVWK 439
Score = 196 bits (422), Expect(2) = 4e-055
Identities = 83/114 (72%), Positives = 88/114 (77%)
Frame = +3 / -2
Query: 792 HTCAASTAYVLNRGAPSRAGTCERRRTSSARESLKIATAVGGVAGLDVRAACGGSDSMAG 971
HTC STA V+NRGAPS G+ RRR SAR SLK++TAVGG +GL VRA SMAG
Sbjct: 435 HTCTPSTA*VMNRGAPSPVGSWARRRPRSARHSLKMSTAVGGASGLAVRACGSSESSMAG 256
Query: 972 AGWYSMCG*PGVGGSRARRSDRSMKGMPAIGTPRQRSAHELMKCSPEKPPATWC 1133
AGWYSMCG GVGGSRARR RSM GM AIGTPRQRSAHELMKC PEKP ATWC
Sbjct: 255 AGWYSMCGWDGVGGSRARRRVRSMNGMTAIGTPRQRSAHELMKCRPEKPSATWC 94
Score = 124 bits (265), Expect = 1e-027
Identities = 55/83 (66%), Positives = 59/83 (71%)
Frame = -2 / +1
Query: 1133 APRGRRLLRTALHQLVGGPLPRRPDRRHALH*PVAPPRARSADPGLPAHRVPAGARHAI* 954
APR RLLR ALHQL+G PLPRR D RHA+H*P PPR R ADP PAHRVPA ARHA
Sbjct: 94 APRR*RLLRPALHQLMGRPLPRRADCRHAVH*PHPPPRTRPADPVPPAHRVPARARHAGL 273
Query: 953 AATGGPHVQAGDAAHSRGYLQAL 885
GPH QAG A H G+LQA+
Sbjct: 274 GGAAGPHRQAGSATHGCGHLQAV 342
Score = 55.6 bits (115), Expect(4) = 2e-027
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = +2 / -1
Query: 791 PHVRRQHSVRAEPRRALARGDLRTEADELGAGELEDSH 904
P+V +H V EPRRALARG+L EA E+GA +LED H
Sbjct: 436 PYVHPEHRVGDEPRRALARGELGAEAAEVGAAQLEDVH 323
Score = 50.1 bits (103), Expect(4) = 2e-027
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +2 / -1
Query: 1037 VNEGHAGDRDAAAEVRPRVDEVQSGEAAGHVVL 1135
VNE H G+R AAAEV P VDEVQ+GEA VVL
Sbjct: 190 VNERHDGNRHAAAEVGP*VDEVQAGEAVSDVVL 92
Score = 40.5 bits (82), Expect(4) = 2e-027
Identities = 17/26 (65%), Positives = 17/26 (65%)
Frame = +1 / -3
Query: 934 *GPPVAAQIAWRAPAGTRCAGSPGSA 1011
*GP AWRA AGTRCAG GSA
Sbjct: 293 *GPAAPPSPAWRARAGTRCAGGTGSA 216
Score = 40.0 bits (81), Expect(2) = 4e-055
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1 / -2
Query: 1162 PHLKWVTWSTSSGKEEM 1212
PHLKWVTW+T SG EEM
Sbjct: 66 PHLKWVTWATRSG*EEM 16
Score = 38.6 bits (78), Expect(2) = 6e-063
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = -2 / +2
Query: 1211 ISSFPLLVLQVTHFKWGFFFFGEGM 1137
ISS+PLLV QVTHFK G G GM
Sbjct: 17 ISSYPLLVAQVTHFKCGGVALGIGM 91
Score = 32.2 bits (64), Expect(4) = 2e-027
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -1
Query: 1137 HAFAEKKKTPLEVGHLEHEQ 1196
HA+AE + LEVGHL HE+
Sbjct: 91 HAYAEGDASALEVGHLGHEE 32
>gb|CA016620.1|CA016620 HV08A21u HV Hordeum vulgare subsp. vulgare cDNA clone HV08A21
3-PRIME, mRNA sequence
Length = 512
Score = 241 bits (521), Expect = 6e-063
Identities = 97/107 (90%), Positives = 102/107 (95%)
Frame = -1 / -1
Query: 603 IQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 424
IQ ALDRM YC+SALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR
Sbjct: 509 IQGALDRMTSDYCQSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 330
Query: 423 PVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYD 283
PVFMGPGGIAYEGLAFVLPSA++DGSLS+AISLQAEHMEKFRKLI D
Sbjct: 329 PVFMGPGGIAYEGLAFVLPSASKDGSLSIAISLQAEHMEKFRKLILD 189
Score = 155 bits (334), Expect = 4e-037
Identities = 69/105 (65%), Positives = 75/105 (71%)
Frame = +2 / +1
Query: 290 MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWMGRRTQ 469
+SFRNFSMCSAC+EMA DRLPS LALG T TG P PKSASW+GRRTQ
Sbjct: 196 ISFRNFSMCSACNEMAMDRLPSLLALGRTNASPSYAMPPGPMNTGLPQPKSASWIGRRTQ 375
Query: 470 LVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAAWI 604
LV PRLGHR VCAPRT+ADRSGC SR*S AD Q I S+A W+
Sbjct: 376 LVRPRLGHRKVCAPRTNADRSGCISR*SRADWQ*SLVILSSAPWM 510
Score = 86.8 bits (183), Expect(2) = 3e-021
Identities = 39/73 (53%), Positives = 40/73 (54%)
Frame = -2 / -2
Query: 602 SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXXXXXXXXXX 423
SR R TG TA Q WTTW CSRTC+ WS T SGAPT SPAGCA
Sbjct: 508 SRER*TG*LATTANQPWTTWRCSRTCQHWSVEHTLSGAPTSASPAGCACRSTTPILAGGG 329
Query: 422 XXSWAPAASPTRG 384
SW AAS TRG
Sbjct: 328 RCSWVLAASRTRG 290
Score = 35.9 bits (72), Expect(2) = 3e-021
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -3 / -3
Query: 334 HLAAGGAHGEVPEAHLR 284
HL AGGAHGEVPEA R
Sbjct: 240 HLVAGGAHGEVPEADPR 190
>gb|CB859459.1|CB859459 HI10I05w HI Hordeum vulgare subsp. vulgare cDNA clone HI10I05
3-PRIME, mRNA sequence
Length = 538
Score = 241 bits (521), Expect = 6e-063
Identities = 97/107 (90%), Positives = 102/107 (95%)
Frame = -1 / -3
Query: 603 IQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 424
IQ ALDRM YC+SALDYLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR
Sbjct: 509 IQGALDRMTSDYCQSALDYLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 330
Query: 423 PVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYD 283
PVFMGPGGIAYEGLAFVLPSA++DGSLS+AISLQAEHMEKFRKLI D
Sbjct: 329 PVFMGPGGIAYEGLAFVLPSASKDGSLSIAISLQAEHMEKFRKLILD 189
Score = 158 bits (339), Expect = 8e-038
Identities = 70/106 (66%), Positives = 76/106 (71%)
Frame = +2 / +1
Query: 290 MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWMGRRTQ 469
+SFRNFSMCSAC+EMA DRLPS LALG T TG P PKSASW+GRRTQ
Sbjct: 196 ISFRNFSMCSACNEMAMDRLPSLLALGRTNASPSYAMPPGPMNTGLPQPKSASWIGRRTQ 375
Query: 470 LVSPRLGHRNVCAPRTSADRSGCSSR*SSADRQYPSSIRSNAAWIT 607
LV PRLGHR VCAPRT+ADRSGC SR*S AD Q I S+A W+T
Sbjct: 376 LVRPRLGHRKVCAPRTNADRSGCISR*SRADWQ*SLVILSSAPWMT 513
Score = 93.2 bits (197), Expect(2) = 3e-023
Identities = 41/81 (50%), Positives = 45/81 (55%)
Frame = -2 / -1
Query: 626 GWQRARP*SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSAGRTRSGAPTWGSPAGCAXXXX 447
GW++ + SR R TG TA Q WTTW CSRTC+ WS T SGAPT SPAGCA
Sbjct: 532 GWRKEQRSSRER*TG*LATTANQPWTTWRCSRTCQHWSVEHTLSGAPTSASPAGCACRST 353
Query: 446 XXXXXXXXXXSWAPAASPTRG 384
SW AAS TRG
Sbjct: 352 TPILAGGGRCSWVLAASRTRG 290
Score = 35.9 bits (72), Expect(2) = 3e-023
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -3 / -2
Query: 334 HLAAGGAHGEVPEAHLR 284
HL AGGAHGEVPEA R
Sbjct: 240 HLVAGGAHGEVPEADPR 190
>gb|BU995764.1|BU995764 HM11E21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11E21
5-PRIME, mRNA sequence
Length = 541
Score = 188 bits (404), Expect(2) = 2e-059
Identities = 76/96 (79%), Positives = 82/96 (85%)
Frame = -3 / +1
Query: 1135 QHHVAGGFSGLHFINSWADLCRGVPIAGMPFIDRSLLRARDPPTPGYPHIEYQPAPAMLS 956
QHHVA GFSGLHFINSWADLCRGVPIA MPFIDR+LLRARDPPTP +PHIEYQPAPAML
Sbjct: 247 QHHVADGFSGLHFINSWADLCRGVPIAVMPFIDRTLLRARDPPTPSHPHIEYQPAPAMLD 426
Query: 955 EPPQAALTSKPATPPTAVAIFKLSRAELVRLRSQVP 848
ALT+KP PPTAV IFKL RA+L RLR+Q+P
Sbjct: 427 SEEPQALTAKPEAPPTAVDIFKLCRADLGRLRAQLP 534
Score = 166 bits (356), Expect(2) = 3e-048
Identities = 70/95 (73%), Positives = 74/95 (77%)
Frame = +3 / -3
Query: 849 GTCERRRTSSARESLKIATAVGGVAGLDVRAACGGSDSMAGAGWYSMCG*PGVGGSRARR 1028
G+ RRR SAR SLK++TAVGG +GL VRA SMAGAGWYSMCG GVGGSRARR
Sbjct: 533 GSWARRRPRSARHSLKMSTAVGGASGLAVRACGSSESSMAGAGWYSMCGWDGVGGSRARR 354
Query: 1029 SDRSMKGMPAIGTPRQRSAHELMKCSPEKPPATWC 1133
RSM GM AIGTPRQRSAHELMKC PEKP ATWC
Sbjct: 353 RVRSMNGMTAIGTPRQRSAHELMKCRPEKPSATWC 249
Score = 124 bits (265), Expect = 1e-027
Identities = 55/83 (66%), Positives = 59/83 (71%)
Frame = -2 / +3
Query: 1133 APRGRRLLRTALHQLVGGPLPRRPDRRHALH*PVAPPRARSADPGLPAHRVPAGARHAI* 954
APR RLLR ALHQL+G PLPRR D RHA+H*P PPR R ADP PAHRVPA ARHA
Sbjct: 249 APRR*RLLRPALHQLMGRPLPRRADCRHAVH*PHPPPRTRPADPVPPAHRVPARARHAGL 428
Query: 953 AATGGPHVQAGDAAHSRGYLQAL 885
GPH QAG A H G+LQA+
Sbjct: 429 GGAAGPHRQAGSATHGCGHLQAV 497
Score = 62.9 bits (131), Expect(2) = 2e-059
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = -2 / +1
Query: 1262 PPGDLERLIPTVDFTDDISSFPLLVLQVTHFKWGFFFFGEGM 1137
P DL+RLIP VDFT ISS+PLLV QVTHFK G G GM
Sbjct: 121 PTMDLKRLIPAVDFTGGISSYPLLVAQVTHFKCGGVALGIGM 246
Score = 50.1 bits (103), Expect(4) = 6e-021
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +2 / -2
Query: 1037 VNEGHAGDRDAAAEVRPRVDEVQSGEAAGHVVL 1135
VNE H G+R AAAEV P VDEVQ+GEA VVL
Sbjct: 345 VNERHDGNRHAAAEVGP*VDEVQAGEAVSDVVL 247
Score = 47.3 bits (97), Expect(2) = 3e-048
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +1 / -3
Query: 1162 PHLKWVTWSTSSGKEEMSSVKST 1230
PHLKWVTW+T SG EEM VKST
Sbjct: 221 PHLKWVTWATRSG*EEMPPVKST 153
Score = 40.5 bits (82), Expect(4) = 6e-021
Identities = 17/26 (65%), Positives = 17/26 (65%)
Frame = +1 / -1
Query: 934 *GPPVAAQIAWRAPAGTRCAGSPGSA 1011
*GP AWRA AGTRCAG GSA
Sbjct: 448 *GPAAPPSPAWRARAGTRCAGGTGSA 371
Score = 32.7 bits (65), Expect(4) = 6e-021
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3 / -2
Query: 1137 HAFAEKKKTPLEVGHLEHEQXXXXXXXXXXXXXXXALEI 1253
HA+AE + LEVGHL HE+ ALE+
Sbjct: 246 HAYAEGDASALEVGHLGHEERVGGDAPGEVDRGDEALEV 130
Score = 32.7 bits (65), Expect(4) = 6e-021
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2 / -2
Query: 842 ARGDLRTEADELGAGELEDSH 904
ARG+L EA E+GA +LED H
Sbjct: 540 ARGELGAEAAEVGAAQLEDVH 478
>gb|BF263303.2|BF263303 HV_CEa0006G07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006G07f, mRNA sequence
Length = 590
Score = 141 bits (302), Expect(3) = 5e-058
Identities = 54/65 (83%), Positives = 58/65 (89%)
Frame = -3 / +3
Query: 1135 QHHVAGGFSGLHFINSWADLCRGVPIAGMPFIDRSLLRARDPPTPGYPHIEYQPAPAMLS 956
QHHVA G SGLHFINSW+DLCRGV IA MPFIDR+L+RARDPPTP YPH+EYQPAPAMLS
Sbjct: 297 QHHVADGMSGLHFINSWSDLCRGVKIAVMPFIDRTLVRARDPPTPSYPHVEYQPAPAMLS 476
Query: 955 EPPQA 941
PQA
Sbjct: 477 SVPQA 491
Score = 111 bits (236), Expect(3) = 6e-039
Identities = 47/62 (75%), Positives = 48/62 (77%)
Frame = +3 / -2
Query: 948 GGSDSMAGAGWYSMCG*PGVGGSRARRSDRSMKGMPAIGTPRQRSAHELMKCSPEKPPAT 1127
G DSMAGAG YS CG* GVGGSRAR RSMKGM AI TPRQRS HELMKC P+ P AT
Sbjct: 484 GTDDSMAGAG*YSTCG*DGVGGSRARTRVRSMKGMTAILTPRQRSDHELMKCKPDMPSAT 305
Query: 1128 WC 1133
WC
Sbjct: 304 WC 299
Score = 68.9 bits (144), Expect(3) = 5e-058
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -2 / +3
Query: 1262 PPGDLERLIPTVDFTDDISSFPLLVLQVTHFKWGFFFFGEGM 1137
P DL+RLIP VD+TDDISSFPLLVLQVT+FK G G GM
Sbjct: 171 PTMDLKRLIPPVDYTDDISSFPLLVLQVTYFKCGGVSLGVGM 296
Score = 54.2 bits (112), Expect(3) = 5e-058
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = -3 / +3
Query: 940 ALTSKPATPPTAVAIFKLSRAELVRLRSQVPARE 839
AL KPA PPTAV IFKL+R+EL RLRSQ+P E
Sbjct: 489 ALGGKPAPPPTAVDIFKLTRSELGRLRSQLPTGE 590
Score = 50.6 bits (104), Expect(3) = 6e-039
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +3 / -2
Query: 840 SRAGTCERRRTSSARESLKIATAVGGVAGLDVRA 941
S G+CERRR SS R SLK++TAVGG AGL RA
Sbjct: 589 SPVGSCERRRPSSERVSLKMSTAVGGGAGLPPRA 488
Score = 38.6 bits (78), Expect(3) = 6e-039
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +1 / -2
Query: 1150 KKKKPHLKWVTWSTSSGKEEMSSVKST 1230
++ PHLK VT ST SGKE+MSSV ST
Sbjct: 283 RETPPHLK*VT*STRSGKEDMSSV*ST 203
>gb|AL500666.1|AL500666 AL500666 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H10u 3', mRNA sequence
Length = 533
Score = 211 bits (455), Expect(2) = 3e-057
Identities = 84/89 (94%), Positives = 88/89 (98%)
Frame = -1 / -1
Query: 549 YLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVL 370
YLE+QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVL
Sbjct: 476 YLEMQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVL 297
Query: 369 PSANRDGSLSVAISLQAEHMEKFRKLIYD 283
PSA++DGSLS+AISLQAEHMEKFRKLI D
Sbjct: 296 PSASKDGSLSIAISLQAEHMEKFRKLILD 210
Score = 142 bits (305), Expect = 4e-033
Identities = 60/86 (69%), Positives = 64/86 (74%)
Frame = +2 / +1
Query: 290 MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWMGRRTQ 469
+SFRNFSMCSAC+EMA DRLPS LALG T TG P PKSASW+GRRTQ
Sbjct: 217 ISFRNFSMCSACNEMAMDRLPSLLALGRTNASPSYAMPPGPMNTGLPQPKSASWIGRRTQ 396
Query: 470 LVSPRLGHRNVCAPRTSADRSGCSSR 547
LV PRLGHR VCAPRT+ADRSGC SR
Sbjct: 397 LVRPRLGHRKVCAPRTNADRSGCISR 474
Score = 31.8 bits (63), Expect(2) = 3e-057
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1 / -3
Query: 603 IQAALDRMDDGYCRSALD 550
IQ ALDR+ YC+SALD
Sbjct: 531 IQGALDRLTSDYCQSALD 478
>gb|BU999255.1|BU999255 HI13O20r HI Hordeum vulgare subsp. vulgare cDNA clone HI13O20
5-PRIME, mRNA sequence
Length = 561
Score = 158 bits (340), Expect(3) = 4e-055
Identities = 62/76 (81%), Positives = 65/76 (85%)
Frame = -3 / +3
Query: 1135 QHHVAGGFSGLHFINSWADLCRGVPIAGMPFIDRSLLRARDPPTPGYPHIEYQPAPAMLS 956
QHHVA GFSGLHFINSWADLCRGVPIA MPFIDR+LLRARDPPTP +PHIEYQPAPAML
Sbjct: 273 QHHVADGFSGLHFINSWADLCRGVPIAVMPFIDRTLLRARDPPTPSHPHIEYQPAPAMLD 452
Query: 955 EPPQAALTSKPATPPT 908
ALT+KP PPT
Sbjct: 453 SEEPQALTAKPEAPPT 500
Score = 141 bits (302), Expect(3) = 1e-043
Identities = 58/75 (77%), Positives = 59/75 (78%)
Frame = +3 / -3
Query: 909 VGGVAGLDVRAACGGSDSMAGAGWYSMCG*PGVGGSRARRSDRSMKGMPAIGTPRQRSAH 1088
VGG +GL VRA SMAGAGWYSMCG GVGGSRARR RSM GM AIGTPRQRSAH
Sbjct: 499 VGGASGLAVRACGSSESSMAGAGWYSMCGWDGVGGSRARRRVRSMNGMTAIGTPRQRSAH 320
Query: 1089 ELMKCSPEKPPATWC 1133
ELMKC PEKP ATWC
Sbjct: 319 ELMKCRPEKPSATWC 275
Score = 115 bits (246), Expect = 5e-025
Identities = 51/75 (68%), Positives = 53/75 (70%)
Frame = -2 / +2
Query: 1133 APRGRRLLRTALHQLVGGPLPRRPDRRHALH*PVAPPRARSADPGLPAHRVPAGARHAI* 954
APR RLLR ALHQL+G PLPRR D RHA+H*P PPR R ADP PAHRVPA ARHA
Sbjct: 275 APRR*RLLRPALHQLMGRPLPRRADCRHAVH*PHPPPRTRPADPVPPAHRVPARARHAGL 454
Query: 953 AATGGPHVQAGDAAH 909
GPH QAG A H
Sbjct: 455 GGAAGPHRQAGSATH 499
Score = 62.9 bits (131), Expect(3) = 4e-055
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = -2 / +3
Query: 1262 PPGDLERLIPTVDFTDDISSFPLLVLQVTHFKWGFFFFGEGM 1137
P DL+RLIP VDFT ISS+PLLV QVTHFK G G GM
Sbjct: 147 PTMDLKRLIPAVDFTGGISSYPLLVAQVTHFKCGGVALGIGM 272
Score = 47.3 bits (97), Expect(3) = 1e-043
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +1 / -3
Query: 1162 PHLKWVTWSTSSGKEEMSSVKST 1230
PHLKWVTW+T SG EEM VKST
Sbjct: 247 PHLKWVTWATRSG*EEMPPVKST 179
Score = 33.1 bits (66), Expect(3) = 4e-055
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -3 / +1
Query: 913 PTAVAIFKLSRAELVRLRSQVP 848
P V IFKL RA+L RLR+Q+P
Sbjct: 496 PRXVDIFKLCRADLGRLRAQLP 561
Score = 27.2 bits (53), Expect(3) = 1e-043
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3 / -2
Query: 849 GTCERRRTSSARESLKIATAVG 914
G+ RRR SAR SLK++T G
Sbjct: 560 GSWARRRPRSARHSLKMSTXRG 495
>gb|BG417675.1|BG417675 HVSMEk0019B08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019B08f, mRNA sequence
Length = 444
Score = 160 bits (343), Expect(2) = 1e-054
Identities = 66/87 (75%), Positives = 69/87 (79%)
Frame = -3 / +2
Query: 928 KPATPPTAVAIFKLSRAELVRLRSQVPAREGAPRFSTYAVLAAHVWRCASLARGLPADQP 749
KP PT V IFKLSR L R R+Q+P EGAPRF+TY VL AHVWRC SLARGL QP
Sbjct: 23 KPERHPTGVDIFKLSRPNLGRFRAQLPTGEGAPRFTTYPVLGAHVWRCPSLARGLSPKQP 202
Query: 748 TKLYCATDGRQRLQPPLPEGYFGNVIF 668
TKLYCATDGRQRLQP LPEGYFGNVIF
Sbjct: 203 TKLYCATDGRQRLQPALPEGYFGNVIF 283
Score = 127 bits (271), Expect(2) = 1e-042
Identities = 56/79 (70%), Positives = 63/79 (79%)
Frame = +2 / -3
Query: 668 KDHVAEVALRKRRLQPLPPVRGAVQLGGLVGRQAARQGRAPPHVRRQHSVRAEPRRALAR 847
+D VAEVALR+R LQPLPPVRGAVQLGGL+ QA QGRAPPHVR +H V EPR ALAR
Sbjct: 283 EDDVAEVALRERGLQPLPPVRGAVQLGGLLWGQATGQGRAPPHVRPEHRVGGEPRGALAR 104
Query: 848 GDLRTEADELGAGELEDSH 904
+L EA E+GAG+LED H
Sbjct: 103 WELGPEAAEVGAGQLEDVH 47
Score = 77.1 bits (162), Expect(2) = 7e-027
Identities = 28/36 (77%), Positives = 29/36 (80%)
Frame = -1 / +3
Query: 816 TLCWRRTCGGARPWRAACRPTSPPSCTAPRTGGSGC 709
T C RTCGGARPW AC +SPPSCTAPRTGGSGC
Sbjct: 135 TRCSGRTCGGARPWPVACPQSSPPSCTAPRTGGSGC 242
Score = 74.4 bits (156), Expect(2) = 1e-054
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = -2 / +3
Query: 623 WQRARP*SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSA 510
W+ ARP S RW WTT TA +RWTTW CS TCRRWSA
Sbjct: 327 WRTARPRSMRRWR*WTTSTAARRWTTWRCSLTCRRWSA 440
Score = 67.5 bits (141), Expect(2) = 1e-042
Identities = 32/55 (58%), Positives = 34/55 (61%)
Frame = +2 / -1
Query: 506 APRTSADRSGCSSR*SSADRQYPSSIRSNAAWITDXXXXXXXXXXXXXXXGVAVK 670
APRTSADRSGC SR*SSA+RQY SI S+AAWI GVAVK
Sbjct: 444 APRTSADRSGCISR*SSAERQYSLSITSSAAWIVVAPSASEPVTLPATASGVAVK 280
Score = 64.3 bits (134), Expect(2) = 7e-027
Identities = 28/50 (56%), Positives = 31/50 (62%)
Frame = -1 / +2
Query: 657 PLXXXXXXXXXXXXXXXVIQAALDRMDDGYCRSALDYLELQPDLSALVRG 508
PL I AAL+ MD+ YCRSALDYLE+QPDLSALVRG
Sbjct: 293 PLAVAGKVTGSLADGATTIHAALEVMDNEYCRSALDYLEMQPDLSALVRG 442
>gb|BU995236.1|BU995236 HM09K05r HM Hordeum vulgare subsp. vulgare cDNA clone HM09K05
5-PRIME, mRNA sequence
Length = 374
Score = 197 bits (425), Expect = 1e-049
Identities = 82/104 (78%), Positives = 87/104 (83%)
Frame = -3 / +3
Query: 979 QPAPAMLSEPPQAALTSKPATPPTAVAIFKLSRAELVRLRSQVPAREGAPRFSTYAVLAA 800
QPAPAML ALT+KP PPTAV IFKL RA+L RLR+Q+P EGAPRFSTYAVL A
Sbjct: 3 QPAPAMLDSEEPQALTAKPEAPPTAVDIFKLCRADLGRLRAQLPTGEGAPRFSTYAVLGA 182
Query: 799 HVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVIF 668
HVWRCASLARGL +QPTKLYCATDGRQRLQP LPEGYFGNVIF
Sbjct: 183 HVWRCASLARGLSPEQPTKLYCATDGRQRLQPALPEGYFGNVIF 314
Score = 135 bits (289), Expect(2) = 2e-031
Identities = 60/84 (71%), Positives = 64/84 (76%)
Frame = +3 / -2
Query: 729 VAQYSLVGWSAGRPRARDAHRHTCAASTAYVLNRGAPSRAGTCERRRTSSARESLKIATA 908
VAQYSLVG S RPRARDAHRHTCA STA VLNRGAPS G+ RRR SAR SLK++TA
Sbjct: 253 VAQYSLVGCSGDRPRARDAHRHTCAPSTA*VLNRGAPSPVGSWARRRPRSARHSLKMSTA 74
Query: 909 VGGVAGLDVRAACGGSDSMAGAGW 980
VGG +GL VRA SMAGAGW
Sbjct: 73 VGGASGLAVRACGSSESSMAGAGW 2
Score = 133 bits (285), Expect = 2e-030
Identities = 58/79 (73%), Positives = 65/79 (82%)
Frame = +2 / -1
Query: 668 KDHVAEVALRKRRLQPLPPVRGAVQLGGLVGRQAARQGRAPPHVRRQHSVRAEPRRALAR 847
+D VAEVALR+R LQPLPPVRGAVQLGGL+ QA QGRAPPHVR +H V AEPRRALAR
Sbjct: 314 EDDVAEVALRERGLQPLPPVRGAVQLGGLLWGQATGQGRAPPHVRPEHRVGAEPRRALAR 135
Query: 848 GDLRTEADELGAGELEDSH 904
G+L EA E+GA +LED H
Sbjct: 134 GELGAEAAEVGAAQLEDVH 78
Score = 23.5 bits (45), Expect(2) = 2e-031
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3 / -3
Query: 282 SRR*ASGTSPCAPPAA 329
SRR + SPC PP A
Sbjct: 372 SRRPPASQSPCPPPRA 325
>gb|BM097912.2|BM097912 EBpi03_SQ002_A12_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_A12 5', mRNA sequence
Length = 509
Score = 188 bits (405), Expect(2) = 3e-048
Identities = 75/78 (96%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 507 AHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAIS 328
AHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSA+RDGSLSVAIS
Sbjct: 2 AHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASRDGSLSVAIS 181
Query: 327 LQAEHMEKFRKLIYDF*S 274
LQAEHMEKFRK+I+DF*S
Sbjct: 182 LQAEHMEKFRKMIFDF*S 235
Score = 131 bits (280), Expect(2) = 3e-033
Identities = 58/78 (74%), Positives = 60/78 (76%)
Frame = +2 / -3
Query: 275 DQKS*MSFRNFSMCSACSEMATDRLPSRLALGSTXXXXXXXXXXXXXXTGRPHPKSASWM 454
DQKS + FRNFS+CSACSEMATDRLPSRLALGST TGRP PKSAS M
Sbjct: 234 DQKSKIIFRNFSICSACSEMATDRLPSRLALGSTKASPSYAMPPGPMNTGRPQPKSAS*M 55
Query: 455 GRRTQLVSPRLGHRNVCA 508
GRRTQLVSPRLGHRNVCA
Sbjct: 54 GRRTQLVSPRLGHRNVCA 1
Score = 31.8 bits (63), Expect(2) = 3e-033
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / -1
Query: 149 RNGKVCRNYV*NQRI 193
R GK CRNYV NQRI
Sbjct: 356 REGKTCRNYVCNQRI 312
Score = 24.9 bits (48), Expect(2) = 3e-048
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / +3
Query: 190 SLISHIVPAHFSVPACPL 137
SLI+H+VPA F P L
Sbjct: 315 SLITHVVPACFPFPLSTL 368
>gb|BU977226.1|BU977226 HA11A22u HA Hordeum vulgare subsp. vulgare cDNA clone HA11A22
3-PRIME, mRNA sequence
Length = 395
Score = 163 bits (351), Expect = 2e-039
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = -1 / -1
Query: 489 PNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHM 310
PNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSA++DGSLS+AISLQAEHM
Sbjct: 395 PNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASKDGSLSIAISLQAEHM 216
Query: 309 EKFRKLIYD 283
EKFRKLI D
Sbjct: 215 EKFRKLILD 189
>gb|CD663895.1|CD663895 UCRHV18_07aa08_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_07aa08, mRNA sequence
Length = 287
Score = 150 bits (322), Expect = 2e-035
Identities = 59/63 (93%), Positives = 62/63 (98%)
Frame = -1 / -1
Query: 486 NLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHME 307
NLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPS ++DGSLS+AISLQAEHME
Sbjct: 278 NLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSGSKDGSLSIAISLQAEHME 99
Query: 306 KFR 298
KFR
Sbjct: 98 KFR 90
>gb|CK125579.1|CK125579 BES1824109b18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B189 5-PRIME, mRNA sequence
Length = 739
Score = 97.7 bits (207), Expect(2) = 4e-034
Identities = 39/106 (36%), Positives = 63/106 (59%)
Frame = -1 / +2
Query: 603 IQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 424
I+ A+ R+DD + RS +DYLEL+ + + +L + SW+ +PIHDADFGWG
Sbjct: 269 IKRAVARVDDAFVRSVIDYLELESEKGSQAARGQFMPETDLWVVSWLGMPIHDADFGWGC 448
Query: 423 PVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIY 286
P F+ P + G A+V + ++D +SV +L+ E+++ F K Y
Sbjct: 449 PKFVAPAQMFGSGTAYVTQAPDKDDGVSVLFALEPEYLQCFEKAFY 586
Score = 68.0 bits (142), Expect(2) = 4e-034
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = -3 / +2
Query: 835 APRFSTYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVI 671
AP STY L AH+WR +ARGL D ++L + RQRL+P LP YFGN I
Sbjct: 35 APGVSTYCALTAHLWRAMCVARGLAPDAESRLRVPANIRQRLRPQLPANYFGNAI 199
>gb|BI960627.1|BI960627 HVSMEn0025G22f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0025G22f,
mRNA sequence
Length = 675
Score = 87.7 bits (185), Expect(2) = 2e-031
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = -3 / +2
Query: 1135 QHHVAGGFSGLHFINSWADLCRGVPIAGMPFIDRSLLRARD 1013
QHHVA G SGLHFINSW+DLCRGV IA MPFIDR+L+RARD
Sbjct: 551 QHHVADGMSGLHFINSWSDLCRGVKIAVMPFIDRTLVRARD 673
Score = 68.9 bits (144), Expect(2) = 2e-031
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -2 / +2
Query: 1262 PPGDLERLIPTVDFTDDISSFPLLVLQVTHFKWGFFFFGEGM 1137
P DL+RLIP VD+TDDISSFPLLVLQVT+FK G G GM
Sbjct: 425 PTMDLKRLIPPVDYTDDISSFPLLVLQVTYFKCGGGLLGVGM 550
>gb|BU977225.1|BU977225 HA11A22r HA Hordeum vulgare subsp. vulgare cDNA clone HA11A22
5-PRIME, mRNA sequence
Length = 218
Score = 135 bits (289), Expect = 6e-031
Identities = 53/58 (91%), Positives = 54/58 (93%)
Frame = -3 / +3
Query: 841 EGAPRFSTYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVIF 668
EGAPRFSTYAVLAAHVWRC SLAR L +QPTKLYCATDGRQRLQPPLPEGYFGNVIF
Sbjct: 18 EGAPRFSTYAVLAAHVWRCVSLARNLAPEQPTKLYCATDGRQRLQPPLPEGYFGNVIF 191
>gb|CA018243.1|CA018243 HV08A21r HV Hordeum vulgare subsp. vulgare cDNA clone HV08A21
5-PRIME, mRNA sequence
Length = 614
Score = 78.0 bits (164), Expect(2) = 2e-028
Identities = 30/36 (83%), Positives = 32/36 (88%)
Frame = -3 / +2
Query: 1135 QHHVAGGFSGLHFINSWADLCRGVPIAGMPFIDRSL 1028
QHHVA G SGLHFINSW+DLCRGV IA MPFIDR+L
Sbjct: 506 QHHVADGMSGLHFINSWSDLCRGVKIAVMPFIDRTL 613
Score = 68.9 bits (144), Expect(2) = 2e-028
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -2 / +2
Query: 1262 PPGDLERLIPTVDFTDDISSFPLLVLQVTHFKWGFFFFGEGM 1137
P DL+RLIP VD+TDDISSFPLLVLQVT+FK G G GM
Sbjct: 380 PTMDLKRLIPPVDYTDDISSFPLLVLQVTYFKCGGVSLGVGM 505
>gb|BU996564.1|BU996564 HM14A08r HM Hordeum vulgare subsp. vulgare cDNA clone HM14A08
5-PRIME, mRNA sequence
Length = 556
Score = 77.1 bits (162), Expect(2) = 6e-028
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = -1 / +2
Query: 603 IQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGR 424
I+ A+ R+DD + RS +DYLEL+ + + +L + SW+ +PIHDADFGWG
Sbjct: 311 IKRAVARVDDAFVRSVIDYLELESEKGSQAARGQFMPETDLWVVSWLGMPIHDADFGWGC 490
Query: 423 PVFMGPGGIAYEGLAFV 373
P F+ P + G A+V
Sbjct: 491 PKFVAPAQMFGSGTAYV 541
Score = 68.0 bits (142), Expect(2) = 6e-028
Identities = 28/55 (50%), Positives = 34/55 (61%)
Frame = -3 / +2
Query: 835 APRFSTYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVI 671
AP STY L AH+WR +ARGL D ++L + RQRL+P LP YFGN I
Sbjct: 77 APGVSTYCALTAHLWRAMCVARGLAPDAESRLRVPANIRQRLRPQLPANYFGNAI 241
>gb|BU994581.1|BU994581 HM07I10r HM Hordeum vulgare subsp. vulgare cDNA clone HM07I10
5-PRIME, mRNA sequence
Length = 587
Score = 81.3 bits (171), Expect(2) = 1e-027
Identities = 31/33 (93%), Positives = 31/33 (93%)
Frame = -3 / +3
Query: 1135 QHHVAGGFSGLHFINSWADLCRGVPIAGMPFID 1037
QHHVA GFSGLHFINSWADLCRGVPIA MPFID
Sbjct: 489 QHHVADGFSGLHFINSWADLCRGVPIAVMPFID 587
Score = 73.9 bits (155), Expect(2) = 7e-021
Identities = 28/32 (87%), Positives = 28/32 (87%)
Frame = +3 / -2
Query: 1038 SMKGMPAIGTPRQRSAHELMKCSPEKPPATWC 1133
SM GM AIGTPRQRSAHELMKC PEKP ATWC
Sbjct: 586 SMNGMTAIGTPRQRSAHELMKCRPEKPSATWC 491
Score = 62.9 bits (131), Expect(2) = 1e-027
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = -2 / +3
Query: 1262 PPGDLERLIPTVDFTDDISSFPLLVLQVTHFKWGFFFFGEGM 1137
P DL+RLIP VDFT ISS+PLLV QVTHFK G G GM
Sbjct: 363 PTMDLKRLIPAVDFTGGISSYPLLVAQVTHFKCGGVALGIGM 488
Score = 47.3 bits (97), Expect(2) = 7e-021
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +1 / -2
Query: 1162 PHLKWVTWSTSSGKEEMSSVKST 1230
PHLKWVTW+T SG EEM VKST
Sbjct: 463 PHLKWVTWATRSG*EEMPPVKST 395
>gb|BF257469.3|BF257469 HVSMEf0013A01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013A01f, mRNA sequence
Length = 519
Score = 82.2 bits (173), Expect(2) = 4e-024
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = -1 / +2
Query: 531 DLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRD 352
D S L +G +L + SW LPI+ ADFGWGRP FMG + + GL +++P + D
Sbjct: 131 DASGLRKGEWVMPETDLWVISWQGLPIYGADFGWGRPAFMGRACLQFSGLVYLVPGPDDD 310
Query: 351 GSLSVAISLQAEHMEKFRKLIY 286
G L V ++++ E + +F++ Y
Sbjct: 311 GRLDVVVAMEPESLARFKEAFY 376
Score = 50.1 bits (103), Expect(2) = 4e-024
Identities = 20/38 (52%), Positives = 22/38 (57%)
Frame = -2 / +3
Query: 623 WQRARP*SRPRWTGWTTGTAGQRWTTWSCSRTCRRWSA 510
W +R S R GWTT T G+ WTTWSC R RR A
Sbjct: 36 WTPSRRRSPARPPGWTTSTCGRCWTTWSCRRRTRRGCA 149
>gb|AV926476.1|AV926476 AV926476 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19i05 5', mRNA sequence
Length = 616
Score = 71.2 bits (149), Expect(2) = 6e-024
Identities = 31/81 (38%), Positives = 42/81 (51%)
Frame = -1 / +3
Query: 528 LSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDG 349
L A A PN+ + SW+R+P +D DFG GRP F P + EGL +LPS DG
Sbjct: 369 LVATADAADMVLSPNIEVDSWLRIPFYDMDFGGGRPFFFMPSYLPVEGLLILLPSFLGDG 548
Query: 348 SLSVAISLQAEHMEKFRKLIY 286
S+ + L + M F+ Y
Sbjct: 549 SVDAYVPLFSRDMNTFKNCCY 611
Score = 63.4 bits (132), Expect(2) = 6e-024
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = -3 / +3
Query: 823 STYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVI 671
ST + AH+WR ++ARGL + T + A DGR R+ P +P+GY GNVI
Sbjct: 60 STLQCVVAHLWRSMTMARGLDGGETTSVAIAVDGRARMSPQVPDGYTGNVI 212
>gb|AV931360.1|AV931360 AV931360 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19i05 3', mRNA sequence
Length = 690
Score = 71.2 bits (149), Expect(2) = 7e-024
Identities = 31/81 (38%), Positives = 42/81 (51%)
Frame = -1 / -2
Query: 528 LSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDG 349
L A A PN+ + SW+R+P +D DFG GRP F P + EGL +LPS DG
Sbjct: 332 LVATADAADMVLSPNIEVDSWLRIPFYDMDFGGGRPFFFMPSYLPVEGLLILLPSFLGDG 153
Query: 348 SLSVAISLQAEHMEKFRKLIY 286
S+ + L + M F+ Y
Sbjct: 152 SVDAYVPLFSRDMNTFKNCCY 90
Score = 63.4 bits (132), Expect(2) = 7e-024
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = -3 / -2
Query: 823 STYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVI 671
ST + AH+WR ++ARGL + T + A DGR R+ P +P+GY GNVI
Sbjct: 641 STLQCVVAHLWRSMTMARGLDGGETTSVAIAVDGRARMSPQVPDGYTGNVI 489
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 637,920,767
Number of Sequences: 312970
Number of extensions: 11396392
Number of successful extensions: 201127
Number of sequences better than 1.0e-020: 44
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 17176006059
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)