TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455862.2.1
(712 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. v... 264 5e-070
gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedl... 247 5e-065
gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedl... 245 2e-064
gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, wat... 211 4e-054
gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subs... 209 2e-053
emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotra... 107 4e-048
gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA li... 107 4e-048
gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA li... 107 4e-048
gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachi... 107 4e-048
gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA li... 107 4e-048
gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA li... 107 4e-048
gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA li... 107 4e-048
gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA li... 107 4e-048
gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA li... 107 4e-048
gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA li... 107 2e-047
gb|BE422291.1|BE422291 HWM022cE.11r ITEC HWM Barley Leaf Li... 187 7e-047
gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA li... 187 7e-047
gb|AV928124.1|AV928124 AV928124 K. Sato unpublished cDNA li... 187 7e-047
gb|BU972696.1|BU972696 HB22H07r BC Hordeum vulgare subsp. v... 187 7e-047
gb|BU996830.1|BU996830 HM14O16r HM Hordeum vulgare subsp. v... 187 7e-047
gb|CA005380.1|CA005380 HU10N24u HU Hordeum vulgare subsp. v... 187 7e-047
gb|CK122280.1|CK122280 BES1824102l14 BES1824 Hordeum vulgar... 187 7e-047
emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotr... 187 7e-047
gb|BI777390.2|BI777390 EBro04_SQ001_B07_R root, 3 week, sal... 112 2e-044
gb|AV931936.1|AV931936 AV931936 K. Sato unpublished cDNA li... 104 7e-044
gb|BF255206.2|BF255206 HVSMEf0006D21f Hordeum vulgare seedl... 107 4e-043
gb|AV930447.1|AV930447 AV930447 K. Sato unpublished cDNA li... 104 6e-043
gb|AL500476.1|AL500476 AL500476 Hordeum vulgare Barke etiol... 151 3e-041
gb|AV929296.1|AV929296 AV929296 K. Sato unpublished cDNA li... 104 1e-039
gb|CA023772.1|CA023772 HZ47F20r HZ Hordeum vulgare subsp. v... 108 9e-037
gb|BJ468727.1|BJ468727 BJ468727 K. Sato unpublished cDNA li... 150 6e-036
gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, red... 107 4e-035
gb|AV920882.1|AV920882 AV920882 K. Sato unpublished cDNA li... 137 8e-032
gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. v... 136 1e-031
gb|BE420888.1|BE420888 HWM003.F01 ITEC HWM Barley Leaf Libr... 104 1e-031
gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA li... 107 1e-031
gb|BU968654.1|BU968654 HB08C22r BC Hordeum vulgare subsp. v... 133 1e-030
gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedl... 89 4e-029
gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedl... 101 5e-029
gb|AV915768.1|AV915768 AV915768 K. Sato unpublished cDNA li... 126 2e-028
gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare s... 56 6e-028
gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. v... 87 2e-027
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 86 2e-026
gb|BJ455314.1|BJ455314 BJ455314 K. Sato unpublished cDNA li... 104 2e-026
gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedl... 89 4e-026
gb|BF256444.2|BF256444 HVSMEf0009P18f Hordeum vulgare seedl... 94 2e-025
gb|BI778106.2|BI778106 EBro07_SQ002_D23_R root, 3 week, red... 100 2e-025
gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. v... 80 3e-025
gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. v... 67 2e-024
gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. v... 67 2e-024
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 79 6e-024
gb|BG300595.1|BG300595 HVSMEb0017J24f Hordeum vulgare seedl... 78 6e-024
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 79 6e-024
gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. v... 79 6e-024
gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedl... 79 6e-024
gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. v... 79 6e-024
gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. v... 89 4e-023
gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. v... 88 5e-023
gb|BQ762274.1|BQ762274 EBro01_SQ005_G12 _R root, 3 week, hy... 74 7e-022
gb|BE194828.3|BE194828 HVSMEh0087B22f Hordeum vulgare 5-45 ... 104 7e-022
gb|BJ450401.1|BJ450401 BJ450401 K. Sato unpublished cDNA li... 104 7e-022
gb|BJ457816.1|BJ457816 BJ457816 K. Sato unpublished cDNA li... 104 7e-022
gb|AV919560.1|AV919560 AV919560 K. Sato unpublished cDNA li... 103 1e-021
gb|BJ447412.1|BJ447412 BJ447412 K. Sato unpublished cDNA li... 103 1e-021
gb|BJ454898.1|BJ454898 BJ454898 K. Sato unpublished cDNA li... 103 1e-021
gb|BQ665345.1|BQ665345 HX03B16u HX Hordeum vulgare subsp. v... 67 2e-021
gb|AL500467.1|AL500467 AL500467 Hordeum vulgare Barke etiol... 66 4e-021
>gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. vulgare cDNA clone HX07G17
3-PRIME, mRNA sequence
Length = 606
Score = 264 bits (570), Expect = 5e-070
Identities = 102/125 (81%), Positives = 107/125 (85%)
Frame = +1 / -1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
RY DL YPG KPMSVHATLWDGSYWATQ+GKV VDWS APF VSYRGYSADACVP+GDGR
Sbjct: 522 RYADLPYPGAKPMSVHATLWDGSYWATQKGKVPVDWSGAPFVVSYRGYSADACVPNGDGR 343
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN*FIGLL 360
PLSCPAGT RWM RQLD AE GTVAWAR++YM YNYCDDGWRFPQGFPAECSR * L
Sbjct: 342 PLSCPAGTGRWMDRQLDDAERGTVAWARRDYMRYNYCDDGWRFPQGFPAECSRG*TTD*L 163
Query: 361 VSPIR 375
S +R
Sbjct: 162 HSRLR 148
Score = 201 bits (433), Expect = 4e-051
Identities = 93/117 (79%), Positives = 96/117 (82%)
Frame = -3 / +2
Query: 359 SKPMNQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESG 180
S+ + Q REHSAGKPCGNRQPSSQ*L* M* LAQATVP SA+SSWR IQR VPAGQESG
Sbjct: 164 SQSVVQPREHSAGKPCGNRQPSSQ*L*RM*SRLAQATVPRSASSSWRSIQRPVPAGQESG 343
Query: 179 RPSPSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARS 9
RPSP GT ASAE*PR*ET KGA DQST T P CVAQ*LPS SVACTDMG PG RS
Sbjct: 344 RPSPLGTHASAE*PR*ETTKGAPDQSTGTLPFCVAQ*LPSQSVACTDMGLAPG*GRS 514
>gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013J17f, mRNA sequence
Length = 542
Score = 247 bits (534), Expect = 5e-065
Identities = 96/125 (76%), Positives = 102/125 (81%)
Frame = +1 / +3
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
RY DL YPG KPMSVHATLWDGSYWATQ+GKV VDWS APF VSYRGYS DACVP+GD R
Sbjct: 105 RYADLPYPGAKPMSVHATLWDGSYWATQKGKVPVDWSGAPFVVSYRGYSDDACVPNGDSR 284
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN*FIGLL 360
P+ CPAGT RWM RQLD AE GTV WAR++YM YNY DDGWRFPQGFPAECSR * L
Sbjct: 285 PVXCPAGTGRWMDRQLDDAERGTVDWARRDYMRYNYWDDGWRFPQGFPAECSRG*TTD*L 464
Query: 361 VSPIR 375
S +R
Sbjct: 465 HSRLR 479
Score = 182 bits (391), Expect = 2e-045
Identities = 86/119 (72%), Positives = 93/119 (78%)
Frame = -3 / -2
Query: 365 DTSKPMNQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQE 186
+ S+ + Q REHSAGKPCGNRQPSSQ*L* M* LAQ+TVP SA+SS R IQR VPAGQ
Sbjct: 469 ECSQSVVQPREHSAGKPCGNRQPSSQ*L*RM*SRLAQSTVPRSASSSXRSIQRPVPAGQX 290
Query: 185 SGRPSPSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARS 9
+GR SP GT AS+E PR*ET KGA DQST T P CVAQ*LPS SVACTDMG PG RS
Sbjct: 289 TGRLSPLGTHASSEYPR*ETTKGAPDQSTGTLPFCVAQ*LPSQSVACTDMGLAPG*GRS 113
>gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001K09f, mRNA sequence
Length = 606
Score = 245 bits (530), Expect = 2e-064
Identities = 90/112 (80%), Positives = 100/112 (89%)
Frame = +1 / +2
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
R+ DL YPG KPM+VHATLWDGSYWATQ G+VKVDWSAAPF VSYRGYSADACVP G GR
Sbjct: 269 RHADLPYPGAKPMAVHATLWDGSYWATQHGRVKVDWSAAPFVVSYRGYSADACVPAGAGR 448
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
PL+CPAGTDRWM+R+ AAE GT+ WAR+NYMHY+YC DGWRFP+GFPAECS
Sbjct: 449 PLACPAGTDRWMTRRPSAAERGTLDWARRNYMHYDYCADGWRFPKGFPAECS 604
Score = 194 bits (418), Expect = 5e-049
Identities = 86/112 (76%), Positives = 92/112 (82%)
Frame = -3 / -1
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRPSPSGT 159
REHSAG P GNRQPS+Q* *CM*F LAQ+ VP SAA R+IQRSVPAG SGRP+P+GT
Sbjct: 606 REHSAGNPLGNRQPSAQ*S*CM*FLLAQSRVPRSAALGRRVIQRSVPAGHASGRPAPAGT 427
Query: 158 QASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
QASAE*PR*ET KGAADQSTFT PCCVAQ*LPS SVACT MG PG RS +
Sbjct: 426 QASAE*PR*ETTKGAADQSTFTLPCCVAQ*LPSQSVACTAMGLAPG*GRSAW 271
>gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_M15 5', mRNA sequence
Length = 383
Score = 211 bits (455), Expect = 4e-054
Identities = 78/97 (80%), Positives = 88/97 (90%)
Frame = +1 / +2
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
R+ DL YPG KPM+VHATLWDGSYWATQQG+VKVDWSAAPF VSYRGYSADACVP G GR
Sbjct: 89 RHADLPYPGAKPMAVHATLWDGSYWATQQGRVKVDWSAAPFVVSYRGYSADACVPAGAGR 268
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYC 291
PL+CPAGTDRWM+R+ +AAE GT+ WAR+NYMHY+YC
Sbjct: 269 PLACPAGTDRWMTRRPNAAERGTLDWARRNYMHYDYC 379
Score = 161 bits (347), Expect = 3e-039
Identities = 73/97 (75%), Positives = 79/97 (81%)
Frame = -3 / -3
Query: 293 SQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRPSPSGTQASAE*PR*ETAKGA 114
+Q* *CM*F LAQ+ VP SAA R+IQRSVPAG SGRP+P+GTQASAE*PR*ET KGA
Sbjct: 381 AQ*S*CM*FLLAQSRVPRSAALGRRVIQRSVPAGHASGRPAPAGTQASAE*PR*ETTKGA 202
Query: 113 ADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
ADQSTFT PCCVAQ*LPS SVACT MG PG RS +
Sbjct: 201 ADQSTFTLPCCVAQ*LPSQSVACTAMGLAPG*GRSAW 91
>gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200031B06F1, mRNA sequence
Length = 375
Score = 209 bits (450), Expect = 2e-053
Identities = 81/101 (80%), Positives = 86/101 (85%)
Frame = +1 / +1
Query: 73 WATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTV 252
WATQ+GKV VDWS APF VSYRGYSADACVP+GDGRPLSCPAGT RWM RQLD AE GTV
Sbjct: 1 WATQKGKVPVDWSGAPFVVSYRGYSADACVPNGDGRPLSCPAGTGRWMDRQLDDAERGTV 180
Query: 253 AWARQNYMHYNYCDDGWRFPQGFPAECSRN*FIGLLVSPIR 375
AWAR++YM YNYCDDGWRFPQGFPAECSR * L S +R
Sbjct: 181 AWARRDYMRYNYCDDGWRFPQGFPAECSRG*TTD*LHSRLR 303
Score = 164 bits (352), Expect = 6e-040
Identities = 76/95 (80%), Positives = 79/95 (83%)
Frame = -3 / -2
Query: 359 SKPMNQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESG 180
S+ + Q REHSAGKPCGNRQPSSQ*L* M* LAQATVP SA+SSWR IQR VPAGQESG
Sbjct: 287 SQSVVQPREHSAGKPCGNRQPSSQ*L*RM*SRLAQATVPRSASSSWRSIQRPVPAGQESG 108
Query: 179 RPSPSGTQASAE*PR*ETAKGAADQSTFTFPCCVA 75
RPSP GT ASAE*PR*ET KGA DQST T P CVA
Sbjct: 107 RPSPLGTHASAE*PR*ETTKGAPDQSTGTLPFCVA 3
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(PM5)
Length = 1188
Score = 107 bits (228), Expect(2) = 4e-048
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / +2
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 575 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 745
Score = 104 bits (221), Expect(2) = 4e-048
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / +2
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 740 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 907
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / -1
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 906 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 742
Score = 60.6 bits (126), Expect(2) = 5e-023
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / -1
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 744 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 577
>gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 3', mRNA sequence
Length = 706
Score = 107 bits (228), Expect(2) = 4e-048
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / -3
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 611 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 441
Score = 104 bits (221), Expect(2) = 4e-048
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / -3
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 446 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 279
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / +1
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 280 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 444
Score = 60.6 bits (126), Expect(2) = 5e-023
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / +1
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 442 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 609
>gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25c17 3', mRNA sequence
Length = 680
Score = 107 bits (228), Expect(2) = 4e-048
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / -3
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 585 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 415
Score = 104 bits (221), Expect(2) = 4e-048
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / -3
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 420 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 253
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / +2
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 254 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 418
Score = 60.6 bits (126), Expect(2) = 5e-023
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / +2
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 416 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 583
>gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019O24f, mRNA sequence
Length = 672
Score = 107 bits (228), Expect(2) = 4e-048
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / +2
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 272 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 442
Score = 104 bits (221), Expect(2) = 4e-048
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / +2
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 437 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 604
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / -1
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 603 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 439
Score = 60.6 bits (126), Expect(2) = 5e-023
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / -1
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 441 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 274
>gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2n22 3', mRNA sequence
Length = 651
Score = 107 bits (228), Expect(2) = 4e-048
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / -1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 594 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 424
Score = 104 bits (221), Expect(2) = 4e-048
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / -1
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 429 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 262
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / +2
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 263 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 427
Score = 60.6 bits (126), Expect(2) = 5e-023
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / +2
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 425 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 592
>gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e10 5', mRNA sequence
Length = 652
Score = 107 bits (228), Expect(2) = 4e-048
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / +2
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 65 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 235
Score = 104 bits (221), Expect(2) = 4e-048
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / +2
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 230 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 397
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / -2
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 396 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 232
Score = 60.6 bits (126), Expect(2) = 5e-023
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / -2
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 234 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 67
>gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16e21 5', mRNA sequence
Length = 648
Score = 107 bits (228), Expect(2) = 4e-048
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / +1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 208 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 378
Score = 104 bits (221), Expect(2) = 4e-048
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / +1
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 373 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 540
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / -2
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 539 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 375
Score = 60.6 bits (126), Expect(2) = 5e-023
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / -2
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 377 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 210
>gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25n11 3', mRNA sequence
Length = 632
Score = 107 bits (228), Expect(2) = 4e-048
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / -3
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 582 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 412
Score = 104 bits (221), Expect(2) = 4e-048
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / -3
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 417 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 250
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / +2
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 251 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 415
Score = 60.6 bits (126), Expect(2) = 5e-023
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / +2
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 413 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 580
>gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 5', mRNA sequence
Length = 627
Score = 107 bits (228), Expect(2) = 4e-048
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / +1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 136 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 306
Score = 104 bits (221), Expect(2) = 4e-048
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / +1
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 301 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 468
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / -2
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 467 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 303
Score = 60.6 bits (126), Expect(2) = 5e-023
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / -2
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 305 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 138
>gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e21 5', mRNA sequence
Length = 547
Score = 107 bits (228), Expect(2) = 2e-047
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / +2
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 218 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 388
Score = 101 bits (216), Expect(2) = 2e-047
Identities = 36/55 (65%), Positives = 41/55 (74%)
Frame = +1 / +2
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECS
Sbjct: 383 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECS 547
Score = 64.3 bits (134), Expect(2) = 3e-022
Identities = 33/54 (61%), Positives = 35/54 (64%)
Frame = -3 / -2
Query: 335 EHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
EHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 546 EHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 385
Score = 60.6 bits (126), Expect(2) = 3e-022
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / -2
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 387 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 220
>gb|BE422291.1|BE422291 HWM022cE.11r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM022cE.11, mRNA sequence
Length = 1248
Score = 187 bits (402), Expect = 7e-047
Identities = 68/115 (59%), Positives = 80/115 (69%)
Frame = +1 / +3
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
+Y L +P +PM+VHATLWDGSYWATQ G VK+ W PF V Y+GY A+ CV D
Sbjct: 240 KYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATN 419
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
SCPAG+D WM R+LD E TVAWA +N + YNYC DGWRFP+GFP EC R *
Sbjct: 420 KTSCPAGSDAWMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGRK* 584
Score = 114 bits (244), Expect = 5e-025
Identities = 63/115 (54%), Positives = 70/115 (60%)
Frame = -3 / -3
Query: 347 NQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRPSP 168
+ LR HS GKP G R PS+Q*L* A ATV S +SS R IQ S+PAGQE +
Sbjct: 586 HHLRPHSPGKPLGKRHPSAQ*L*ERQLRSAHATVLSSPSSSSRCIQASLPAGQEVLLVAL 407
Query: 167 SGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
S TQ A *P * T KG+ Q T PCCVAQ*LPSHSVACT +G G R Y
Sbjct: 406 SWTQPLAW*PW*GTTKGSWRQWILTVPCCVAQ*LPSHSVACTVIGRADGNGRPSY 242
>gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1b10 3', mRNA sequence
Length = 664
Score = 187 bits (402), Expect = 7e-047
Identities = 68/115 (59%), Positives = 80/115 (69%)
Frame = +1 / -3
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
+Y L +P +PM+VHATLWDGSYWATQ G VK+ W PF V Y+GY A+ CV D
Sbjct: 530 KYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATN 351
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
SCPAG+D WM R+LD E TVAWA +N + YNYC DGWRFP+GFP EC R *
Sbjct: 350 KTSCPAGSDAWMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGRK* 186
Score = 114 bits (244), Expect = 5e-025
Identities = 63/115 (54%), Positives = 70/115 (60%)
Frame = -3 / +1
Query: 347 NQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRPSP 168
+ LR HS GKP G R PS+Q*L* A ATV S +SS R IQ S+PAGQE +
Sbjct: 184 HHLRPHSPGKPLGKRHPSAQ*L*ERQLRSAHATVLSSPSSSSRCIQASLPAGQEVLLVAL 363
Query: 167 SGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
S TQ A *P * T KG+ Q T PCCVAQ*LPSHSVACT +G G R Y
Sbjct: 364 SWTQPLAW*PW*GTTKGSWRQWILTVPCCVAQ*LPSHSVACTVIGRADGNGRPSY 528
>gb|AV928124.1|AV928124 AV928124 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27a04 3', mRNA sequence
Length = 485
Score = 187 bits (402), Expect = 7e-047
Identities = 68/115 (59%), Positives = 80/115 (69%)
Frame = +1 / -1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
+Y L +P +PM+VHATLWDGSYWATQ G VK+ W PF V Y+GY A+ CV D
Sbjct: 359 KYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATN 180
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
SCPAG+D WM R+LD E TVAWA +N + YNYC DGWRFP+GFP EC R *
Sbjct: 179 KTSCPAGSDAWMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGRK* 15
Score = 114 bits (244), Expect = 5e-025
Identities = 63/115 (54%), Positives = 70/115 (60%)
Frame = -3 / +1
Query: 347 NQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRPSP 168
+ LR HS GKP G R PS+Q*L* A ATV S +SS R IQ S+PAGQE +
Sbjct: 13 HHLRPHSPGKPLGKRHPSAQ*L*ERQLRSAHATVLSSPSSSSRCIQASLPAGQEVLLVAL 192
Query: 167 SGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
S TQ A *P * T KG+ Q T PCCVAQ*LPSHSVACT +G G R Y
Sbjct: 193 SWTQPLAW*PW*GTTKGSWRQWILTVPCCVAQ*LPSHSVACTVIGRADGNGRPSY 357
>gb|BU972696.1|BU972696 HB22H07r BC Hordeum vulgare subsp. vulgare cDNA clone HB22H07
5-PRIME, mRNA sequence
Length = 447
Score = 187 bits (402), Expect = 7e-047
Identities = 68/115 (59%), Positives = 80/115 (69%)
Frame = +1 / +1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
+Y L +P +PM+VHATLWDGSYWATQ G VK+ W PF V Y+GY A+ CV D
Sbjct: 34 KYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATN 213
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
SCPAG+D WM R+LD E TVAWA +N + YNYC DGWRFP+GFP EC R *
Sbjct: 214 KTSCPAGSDAWMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGRK* 378
Score = 114 bits (244), Expect = 5e-025
Identities = 63/115 (54%), Positives = 70/115 (60%)
Frame = -3 / -2
Query: 347 NQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRPSP 168
+ LR HS GKP G R PS+Q*L* A ATV S +SS R IQ S+PAGQE +
Sbjct: 380 HHLRPHSPGKPLGKRHPSAQ*L*ERQLRSAHATVLSSPSSSSRCIQASLPAGQEVLLVAL 201
Query: 167 SGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
S TQ A *P * T KG+ Q T PCCVAQ*LPSHSVACT +G G R Y
Sbjct: 200 SWTQPLAW*PW*GTTKGSWRQWILTVPCCVAQ*LPSHSVACTVIGRADGNGRPSY 36
>gb|BU996830.1|BU996830 HM14O16r HM Hordeum vulgare subsp. vulgare cDNA clone HM14O16
5-PRIME, mRNA sequence
Length = 604
Score = 187 bits (402), Expect = 7e-047
Identities = 68/115 (59%), Positives = 80/115 (69%)
Frame = +1 / +1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
+Y L +P +PM+VHATLWDGSYWATQ G VK+ W PF V Y+GY A+ CV D
Sbjct: 100 KYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATN 279
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
SCPAG+D WM R+LD E TVAWA +N + YNYC DGWRFP+GFP EC R *
Sbjct: 280 KTSCPAGSDAWMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGRK* 444
Score = 114 bits (244), Expect = 5e-025
Identities = 63/115 (54%), Positives = 70/115 (60%)
Frame = -3 / -3
Query: 347 NQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRPSP 168
+ LR HS GKP G R PS+Q*L* A ATV S +SS R IQ S+PAGQE +
Sbjct: 446 HHLRPHSPGKPLGKRHPSAQ*L*ERQLRSAHATVLSSPSSSSRCIQASLPAGQEVLLVAL 267
Query: 167 SGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
S TQ A *P * T KG+ Q T PCCVAQ*LPSHSVACT +G G R Y
Sbjct: 266 SWTQPLAW*PW*GTTKGSWRQWILTVPCCVAQ*LPSHSVACTVIGRADGNGRPSY 102
>gb|CA005380.1|CA005380 HU10N24u HU Hordeum vulgare subsp. vulgare cDNA clone HU10N24
3-PRIME, mRNA sequence
Length = 551
Score = 187 bits (402), Expect = 7e-047
Identities = 68/115 (59%), Positives = 80/115 (69%)
Frame = +1 / -2
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
+Y L +P +PM+VHATLWDGSYWATQ G VK+ W PF V Y+GY A+ CV D
Sbjct: 490 KYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATN 311
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
SCPAG+D WM R+LD E TVAWA +N + YNYC DGWRFP+GFP EC R *
Sbjct: 310 KTSCPAGSDAWMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGRK* 146
Score = 114 bits (244), Expect = 5e-025
Identities = 63/115 (54%), Positives = 70/115 (60%)
Frame = -3 / +3
Query: 347 NQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRPSP 168
+ LR HS GKP G R PS+Q*L* A ATV S +SS R IQ S+PAGQE +
Sbjct: 144 HHLRPHSPGKPLGKRHPSAQ*L*ERQLRSAHATVLSSPSSSSRCIQASLPAGQEVLLVAL 323
Query: 167 SGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
S TQ A *P * T KG+ Q T PCCVAQ*LPSHSVACT +G G R Y
Sbjct: 324 SWTQPLAW*PW*GTTKGSWRQWILTVPCCVAQ*LPSHSVACTVIGRADGNGRPSY 488
>gb|CK122280.1|CK122280 BES1824102l14 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L142 5-PRIME, mRNA sequence
Length = 632
Score = 187 bits (402), Expect = 7e-047
Identities = 68/115 (59%), Positives = 80/115 (69%)
Frame = +1 / +2
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
+Y L +P +PM+VHATLWDGSYWATQ G VK+ W PF V Y+GY A+ CV D
Sbjct: 125 KYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATN 304
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
SCPAG+D WM R+LD E TVAWA +N + YNYC DGWRFP+GFP EC R *
Sbjct: 305 KTSCPAGSDAWMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGRK* 469
Score = 114 bits (244), Expect = 5e-025
Identities = 63/115 (54%), Positives = 70/115 (60%)
Frame = -3 / -3
Query: 347 NQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRPSP 168
+ LR HS GKP G R PS+Q*L* A ATV S +SS R IQ S+PAGQE +
Sbjct: 471 HHLRPHSPGKPLGKRHPSAQ*L*ERQLRSAHATVLSSPSSSSRCIQASLPAGQEVLLVAL 292
Query: 167 SGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
S TQ A *P * T KG+ Q T PCCVAQ*LPSHSVACT +G G R Y
Sbjct: 291 SWTQPLAW*PW*GTTKGSWRQWILTVPCCVAQ*LPSHSVACTVIGRADGNGRPSY 127
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
Length = 1110
Score = 187 bits (402), Expect = 7e-047
Identities = 68/115 (59%), Positives = 80/115 (69%)
Frame = +1 / +2
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
+Y L +P +PM+VHATLWDGSYWATQ G VK+ W PF V Y+GY A+ CV D
Sbjct: 551 KYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATN 730
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
SCPAG+D WM R+LD E TVAWA +N + YNYC DGWRFP+GFP EC R *
Sbjct: 731 KTSCPAGSDAWMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGRK* 895
Score = 114 bits (244), Expect = 5e-025
Identities = 63/115 (54%), Positives = 70/115 (60%)
Frame = -3 / -1
Query: 347 NQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRPSP 168
+ LR HS GKP G R PS+Q*L* A ATV S +SS R IQ S+PAGQE +
Sbjct: 897 HHLRPHSPGKPLGKRHPSAQ*L*ERQLRSAHATVLSSPSSSSRCIQASLPAGQEVLLVAL 718
Query: 167 SGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
S TQ A *P * T KG+ Q T PCCVAQ*LPSHSVACT +G G R Y
Sbjct: 717 SWTQPLAW*PW*GTTKGSWRQWILTVPCCVAQ*LPSHSVACTVIGRADGNGRPSY 553
>gb|BI777390.2|BI777390 EBro04_SQ001_B07_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_B07 5', mRNA sequence
Length = 465
Score = 112 bits (239), Expect(2) = 2e-044
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +1 / +2
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+C AG+D WM+RQLD +EWGTV WA QNYM YNYC DG+RFPQGFPAECSR
Sbjct: 146 ACHAGSDGWMNRQLDGSEWGTVKWAEQNYMRYNYCADGYRFPQGFPAECSR 298
Score = 87.2 bits (184), Expect(2) = 2e-044
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +1 / +2
Query: 31 KPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
KPM +HATLWDGSYWAT++GKV +DWS APF V Y+ Y A+AC G
Sbjct: 5 KPMRLHATLWDGSYWATEKGKVPIDWSNAPFNVLYKNYYANACASGG 145
Score = 68.4 bits (143), Expect(2) = 8e-021
Identities = 33/54 (61%), Positives = 37/54 (68%)
Frame = -3 / -1
Query: 350 MNQLREHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQ 189
++Q R HSAG PCGN PS+Q*L* M*FC A TVPHS SS I S+PA Q
Sbjct: 309 LDQ*RLHSAGNPCGNL*PSAQ*L*RM*FCSAHLTVPHSEPSSCLFIHPSLPAWQ 148
Score = 51.5 bits (106), Expect(2) = 8e-021
Identities = 28/47 (59%), Positives = 31/47 (65%)
Frame = -3 / -1
Query: 173 SPSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMG 33
+P QA A * +T KGA DQS T P VAQ*LPSHSVAC+ MG
Sbjct: 147 APPLAQALA**FLYKTLKGALDQSMGTLPFSVAQ*LPSHSVACSLMG 7
>gb|AV931936.1|AV931936 AV931936 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26m16 3', mRNA sequence
Length = 546
Score = 104 bits (221), Expect(2) = 7e-044
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / -1
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 381 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 214
Score = 93.2 bits (197), Expect(2) = 7e-044
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = +1 / -3
Query: 4 YPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRG 141
Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRG
Sbjct: 544 YDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRG 407
Score = 66.6 bits (139), Expect(2) = 4e-022
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / +2
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 215 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 379
Score = 57.9 bits (120), Expect(2) = 4e-022
Identities = 29/46 (63%), Positives = 31/46 (67%)
Frame = -3 / +3
Query: 140 PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 408 PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 545
>gb|BF255206.2|BF255206 HVSMEf0006D21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006D21f, mRNA sequence
Length = 584
Score = 107 bits (228), Expect(2) = 4e-043
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / +2
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 56 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 226
Score = 87.7 bits (185), Expect(2) = 4e-043
Identities = 34/56 (60%), Positives = 39/56 (69%)
Frame = +1 / +2
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D MS +LDA GTVA A YM Y+YC DGWRFP G PAECSR
Sbjct: 221 NGGSSACPAGSDA*MSTELDAKALGTVA*AESKYMSYDYCTDGWRFPNGLPAECSR 388
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / -3
Query: 338 REHSAGKPCGNRQPSSQ*L*CM*FCLAQATVPHSAASSWRLIQRSVPAGQESGRP 174
REHSAGKP G RQPS Q* * M AQATVP + ASS LIQ S+PAG P
Sbjct: 387 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLIQASLPAGHAEEPP 223
Score = 60.6 bits (126), Expect(2) = 5e-023
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / -3
Query: 170 PSGTQASAE*PR*ETAKGAADQSTFTFPCCVAQ*LPSHSVACTDMGFPPGYARSGY 3
P TQ *PR* T KGA QS T P VAQ*LPS SVACT +G+ GY RS Y
Sbjct: 225 PLLTQPLEV*PR*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSY 58
>gb|AV930447.1|AV930447 AV930447 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22j07 3', mRNA sequence
Length = 650
Score = 104 bits (221), Expect(3) = 6e-043
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / -2
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 406 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 239
Score = 62.9 bits (131), Expect(3) = 6e-043
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = +1 / -2
Query: 70 YWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
YWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 502 YWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 401
Score = 45.5 bits (93), Expect(3) = 6e-043
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1 / -1
Query: 1 RYPDLAYPGGKPMSVHATLWDG 66
+Y DL YP +PM+VHATLWDG
Sbjct: 572 KYDDLPYPSSQPMTVHATLWDG 507
>gb|AL500476.1|AL500476 AL500476 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06M16r 3', mRNA sequence
Length = 691
Score = 151 bits (325), Expect(2) = 3e-041
Identities = 56/94 (59%), Positives = 64/94 (68%)
Frame = +1 / -1
Query: 64 GSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGRPLSCPAGTDRWMSRQLDAAEW 243
GSYWATQ G VK+ W PF V Y+GY A+ CV D SCPAG+D WM R+LD E
Sbjct: 553 GSYWATQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATNKTSCPAGSDAWMHRELDDGEL 374
Query: 244 GTVAWARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
TVAWA +N + YNYC DGWRFP+GFP EC R *
Sbjct: 373 STVAWAERNCLSYNYCADGWRFPKGFPGECGRK* 272
Score = 36.8 bits (74), Expect(2) = 3e-041
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1 / -3
Query: 1 RYPDLAYPGGKPMSVHATLWDG 66
+Y L + +PM+VHATLWDG
Sbjct: 617 KYDGLPFXSARPMTVHATLWDG 552
>gb|AV929296.1|AV929296 AV929296 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11l14 3', mRNA sequence
Length = 631
Score = 104 bits (221), Expect(3) = 1e-039
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / -2
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 435 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 268
Score = 51.5 bits (106), Expect(3) = 1e-039
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1 / -1
Query: 67 SYWATQQGKVKVDWSAAPFAVSYRG 141
SYWAT+ G VK+DW+ APF V+YRG
Sbjct: 535 SYWATRHGDVKIDWTQAPFVVNYRG 461
Score = 45.5 bits (93), Expect(3) = 1e-039
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1 / -3
Query: 1 RYPDLAYPGGKPMSVHATLWDG 66
+Y DL YP +PM+VHATLWDG
Sbjct: 602 KYDDLPYPSSQPMTVHATLWDG 537
>gb|CA023772.1|CA023772 HZ47F20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47F20
5-PRIME, mRNA sequence
Length = 412
Score = 108 bits (231), Expect(2) = 9e-037
Identities = 37/57 (64%), Positives = 47/57 (82%)
Frame = +1 / +1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGYS++ CV +G
Sbjct: 124 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYSSNGCVSNG 294
Score = 64.8 bits (135), Expect(2) = 9e-037
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = +1 / +1
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYC 291
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC
Sbjct: 289 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYC 408
>gb|BJ468727.1|BJ468727 BJ468727 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27a04 5', mRNA sequence
Length = 417
Score = 150 bits (323), Expect = 6e-036
Identities = 55/97 (56%), Positives = 66/97 (68%)
Frame = +1 / +1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGR 180
+Y L +P +PM+VHATLWDGSYWATQ G VK+ W PF V Y+GY A+ CV D
Sbjct: 127 KYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATN 306
Query: 181 PLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYC 291
SCPAG+D WM R+LD E TVAWA +N + YNYC
Sbjct: 307 KTSCPAGSDAWMHRELDDGELSTVAWAERNCLSYNYC 417
>gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_F18 5', mRNA sequence
Length = 622
Score = 107 bits (228), Expect(2) = 4e-035
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / +1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 340 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 510
Score = 60.6 bits (126), Expect(2) = 4e-035
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +1 / +1
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNY 288
+G +CPAG+D WMS +LDA GTVAWA YM Y+Y
Sbjct: 505 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDY 621
>gb|AV920882.1|AV920882 AV920882 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p03 3', mRNA sequence
Length = 475
Score = 137 bits (293), Expect = 8e-032
Identities = 51/89 (57%), Positives = 59/89 (66%)
Frame = +1 / -2
Query: 79 TQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAW 258
TQ G VK+ W PF V Y+GY A+ CV D SCPAG+D WM R+LD E TVAW
Sbjct: 474 TQHGTVKIHWRHDPFVVPYQGYHANGCVHDKATNKTSCPAGSDAWMHRELDDGELSTVAW 295
Query: 259 ARQNYMHYNYCDDGWRFPQGFPAECSRN* 345
A +N + YNYC DGWRFP+GFP EC R *
Sbjct: 294 AERNCLSYNYCADGWRFPKGFPGECGRK* 208
>gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45I10
5-PRIME, mRNA sequence
Length = 518
Score = 136 bits (292), Expect = 1e-031
Identities = 51/59 (86%), Positives = 53/59 (89%)
Frame = +1 / +1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDG 177
RY DL YPG KPMSVHATLWDGSYWATQ+GKV VDWS APF VSYRGYSADACVP+GDG
Sbjct: 340 RYADLPYPGAKPMSVHATLWDGSYWATQKGKVPVDWSGAPFVVSYRGYSADACVPNGDG 516
>gb|BE420888.1|BE420888 HWM003.F01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.F01, mRNA sequence
Length = 861
Score = 104 bits (221), Expect(2) = 1e-031
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / +1
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 139 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 306
Score = 51.9 bits (107), Expect(2) = 1e-031
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +1 / +1
Query: 76 ATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
A G VK+DW+ APF V+YRGYS++ CV +G
Sbjct: 49 ARGHGDVKIDWTQAPFVVNYRGYSSNGCVSNG 144
>gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j18 5', mRNA sequence
Length = 447
Score = 107 bits (228), Expect(2) = 1e-031
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +1 / +3
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ APF V+YRGY+++ CV +G
Sbjct: 186 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNG 356
Score = 48.7 bits (100), Expect(2) = 1e-031
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1 / +3
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWA 261
+G +CPAG+D WMS +LDA GTVAWA
Sbjct: 351 NGGSSACPAGSDAWMSTELDAKALGTVAWA 440
>gb|BU968654.1|BU968654 HB08C22r BC Hordeum vulgare subsp. vulgare cDNA clone HB08C22
5-PRIME, mRNA sequence
Length = 445
Score = 133 bits (284), Expect = 1e-030
Identities = 49/87 (56%), Positives = 58/87 (66%)
Frame = +1 / +2
Query: 85 QGKVKVDWSAAPFAVSYRGYSADACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWAR 264
+G VK+ W PF V Y+GY A+ CV D SCPAG+D WM R+LD E TVAWA
Sbjct: 8 RGTVKIHWRHDPFVVPYQGYHANGCVHDKATNKTSCPAGSDAWMHRELDDGELSTVAWAE 187
Query: 265 QNYMHYNYCDDGWRFPQGFPAECSRN* 345
+N + YNYC DGWRFP+GFP EC R *
Sbjct: 188 RNCLSYNYCADGWRFPKGFPGECGRK* 268
>gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001G10f, mRNA sequence
Length = 841
Score = 88.6 bits (187), Expect(2) = 4e-029
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = +1 / +2
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGRP 183
+A+P +PM ++++LW+ WATQ G+VK DWS APF+ SYRG+ ADACV GRP
Sbjct: 59 IAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTAGGRP 229
Score = 59.3 bits (123), Expect(2) = 4e-029
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +1 / +2
Query: 211 WMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
W +++LD + W + NYM YNYC D RF QG PAECS
Sbjct: 287 WYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRFAQGVPAECS 412
>gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020K16f, mRNA sequence
Length = 901
Score = 101 bits (215), Expect(3) = 5e-029
Identities = 35/57 (61%), Positives = 45/57 (78%)
Frame = +1 / +3
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
+Y DL YP +PM+VHATLWDGSYWAT+ G VK+DW+ A F V+YRGY+ + CV +G
Sbjct: 576 KYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQALFVVNYRGYTFNGCVSNG 746
Score = 35.9 bits (72), Expect(3) = 5e-029
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1 / +1
Query: 244 GTVAWARQNYMHYNYCDDGWRFPQGFPAE 330
G VAWA + N WRFP GFPA+
Sbjct: 811 GPVAWADTSTCSTNTGPTAWRFPTGFPAD 897
Score = 28.1 bits (55), Expect(3) = 5e-029
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1 / +3
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEW 243
+G +CPAG+D WM+ W
Sbjct: 741 NGGSFACPAGSDPWMNTGSTPKPW 812
>gb|AV915768.1|AV915768 AV915768 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p03 5', mRNA sequence
Length = 526
Score = 126 bits (269), Expect = 2e-028
Identities = 46/82 (56%), Positives = 54/82 (65%)
Frame = +1 / +3
Query: 100 VDWSAAPFAVSYRGYSADACVPDGDGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMH 279
+ W PF V Y+GY A+ CV D SCPAG+D WM R+LD E TVAWA +N +
Sbjct: 36 IHWRHDPFVVPYQGYHANGCVHDKATNKTSCPAGSDAWMHRELDDGELSTVAWAERNCLS 215
Query: 280 YNYCDDGWRFPQGFPAECSRN* 345
YNYC DGWRFP+GFP EC R *
Sbjct: 216 YNYCADGWRFPKGFPGECGRK* 281
>gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111H09_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 918
Score = 56.1 bits (116), Expect(4) = 6e-028
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1 / +1
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGK 93
R+ + Y G KPM +HATLWDGSYWAT++ +
Sbjct: 601 RFAGIPYAGSKPMRLHATLWDGSYWATEKAR 693
Score = 49.6 bits (102), Expect(4) = 6e-028
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1 / +3
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQN 270
+C A +D WM+RQLD +EWGT WA QN
Sbjct: 771 ACHARSDGWMNRQLDGSEWGTRQWAEQN 854
Score = 45.1 bits (92), Expect(4) = 6e-028
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1 / +3
Query: 82 QQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
++GKV +DWS APF V Y+ Y A+AC G
Sbjct: 681 REGKVPIDWSNAPFNVLYKNYYANACASGG 770
Score = 28.1 bits (55), Expect(4) = 6e-028
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1 / +1
Query: 283 NYCDDGWRFPQGFPAECS 336
+YC DG++ P G PA+ +
Sbjct: 865 HYCADGYKVPTGXPADAA 918
>gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
5-PRIME, mRNA sequence
Length = 604
Score = 87.2 bits (184), Expect(2) = 2e-027
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = +1 / +1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGRP 183
+A+P +PM ++++LW+ WATQ G+VK DWS APF+ SYRG+ ADACV GRP
Sbjct: 91 IAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTVGGRP 261
Score = 54.7 bits (113), Expect(2) = 2e-027
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1 / +1
Query: 196 AGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
A W +++LD + W + NYM YNYC D R +G PAECS
Sbjct: 313 AAVGDWYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECS 453
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEA)
Length = 1174
Score = 85.8 bits (181), Expect(2) = 2e-026
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +1 / +1
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGRP 183
+A+P +PM ++++LW+ WATQ +VK DWS APF+ SYRG+ ADACV GRP
Sbjct: 559 IAFPKNQPMRLYSSLWNADDWATQGARVKTDWSHAPFSASYRGFKADACVVTAGGRP 729
Score = 52.8 bits (109), Expect(2) = 2e-026
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1 / +1
Query: 211 WMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
W +++LD + W + NYM YNYC D R +G PAECS
Sbjct: 796 WYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECS 921
>gb|BJ455314.1|BJ455314 BJ455314 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16e21 3', mRNA sequence
Length = 484
Score = 104 bits (221), Expect(2) = 2e-026
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1 / -3
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GTVAWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 428 NGGSSACPAGSDAWMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 261
Score = 34.5 bits (69), Expect(2) = 2e-026
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1 / -3
Query: 115 APFAVSYRGYSADACVPDG 171
APF V+YRGY+++ CV +G
Sbjct: 479 APFVVNYRGYTSNGCVSNG 423
>gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013D21f, mRNA sequence
Length = 830
Score = 88.6 bits (187), Expect(2) = 4e-026
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = +1 / +2
Query: 13 LAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGRP 183
+A+P +PM ++++LW+ WATQ G+VK DWS APF+ SYRG+ ADACV GRP
Sbjct: 218 IAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTAGGRP 388
Score = 49.2 bits (101), Expect(2) = 4e-026
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1 / +2
Query: 211 WMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
W +++LD + W + NYM YNYC D R +G P +CS
Sbjct: 455 WYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRVTKGVPGKCS 580
>gb|BF256444.2|BF256444 HVSMEf0009P18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009P18f, mRNA sequence
Length = 837
Score = 94.1 bits (199), Expect(2) = 2e-025
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = +1 / +3
Query: 1 RYPDLAYPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDG 171
R+ + Y G KPM +HATLWDGSYWAT++GKV +DWS APF V Y+ Y +AC G
Sbjct: 108 RFAGIPYAGSKPMRLHATLWDGSYWATEKGKVPIDWSNAPFNVLYKNYYTNACASGG 278
Score = 41.4 bits (84), Expect(2) = 2e-025
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1 / +3
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMH 279
+C AG D WM+RQ+D +EWGT + +H
Sbjct: 279 ACHAGEDGWMNRQVDGSEWGTNERTERRCVH 371
>gb|BI778106.2|BI778106 EBro07_SQ002_D23_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_D23 5', mRNA sequence
Length = 512
Score = 100 bits (214), Expect(2) = 2e-025
Identities = 36/56 (64%), Positives = 41/56 (73%)
Frame = +1 / +3
Query: 172 DGRPLSCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECSR 339
+G +CPAG+D WMS +LDA GT AWA YM Y+YC DGWRFP GFPAECSR
Sbjct: 57 NGGSSACPAGSDAWMSTELDAKALGTGAWAESKYMSYDYCTDGWRFPNGFPAECSR 224
Score = 34.5 bits (69), Expect(2) = 2e-025
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1 / +3
Query: 115 APFAVSYRGYSADACVPDG 171
APF V+YRGY+++ CV +G
Sbjct: 6 APFVVNYRGYTSNGCVSNG 62
>gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
3-PRIME, mRNA sequence
Length = 579
Score = 80.3 bits (169), Expect(2) = 3e-025
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = +1 / -2
Query: 34 PMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADACVPDGDGRP 183
PM ++++LW+ WATQ G+VK DWS APF+ SYRG+ ADACV GRP
Sbjct: 578 PMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTVGGRP 429
Score = 54.7 bits (113), Expect(2) = 3e-025
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1 / -2
Query: 196 AGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
A W +++LD + W + NYM YNYC D R +G PAECS
Sbjct: 377 AAVGDWYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECS 237
>gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. vulgare cDNA clone HV11B18
3-PRIME, mRNA sequence
Length = 540
Score = 66.6 bits (139), Expect(2) = 2e-024
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1 / -3
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADAC 159
Y + M V+A++WD WATQ G+V+ DWS APF SY+G +A C
Sbjct: 460 YLRSQAMRVYASVWDAEEWATQGGRVRTDWSRAPFVASYKGLAASGC 320
Score = 65.7 bits (137), Expect(2) = 2e-024
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +1 / -3
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
+C WM ++LDA + W ++NYM YNYC D WRF G P EC+
Sbjct: 301 ACANSNGAWMYQELDATALDRLQWVQKNYMIYNYCTDTWRFKDGAPPECA 152
>gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. vulgare cDNA clone HP07O06
5-PRIME, mRNA sequence
Length = 533
Score = 66.6 bits (139), Expect(2) = 2e-024
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1 / +2
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADAC 159
Y + M V+A++WD WATQ G+V+ DWS APF SY+G +A C
Sbjct: 167 YLRSQAMRVYASVWDAEEWATQGGRVRTDWSRAPFVASYKGLAASGC 307
Score = 65.7 bits (137), Expect(2) = 2e-024
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +1 / +2
Query: 187 SCPAGTDRWMSRQLDAAEWGTVAWARQNYMHYNYCDDGWRFPQGFPAECS 336
+C WM ++LDA + W ++NYM YNYC D WRF G P EC+
Sbjct: 326 ACANSNGAWMYQELDATALDRLQWVQKNYMIYNYCTDTWRFKDGAPPECA 475
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 319,449,035
Number of Sequences: 312970
Number of extensions: 5614060
Number of successful extensions: 102711
Number of sequences better than 1.0e-020: 96
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7847091165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)