TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2448720.2.1
         (510 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CK125352.1|CK125352  BES1824107m07 BES1824 Hordeum vulgar...   123   7e-028

>gb|CK125352.1|CK125352 BES1824107m07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
           MPMGp2010M077 5-PRIME, mRNA sequence
          Length = 930

 Score =  123 bits (263), Expect = 7e-028
 Identities = 47/68 (69%), Positives = 54/68 (79%)
 Frame = +3 / +2

                                                                       
Query: 3   VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
           VLVSLDNVG+WN+RAE+LD+WY GQEVYVKVADPLGYN+TEM+ P   LYCGLLK   K 
Sbjct: 665 VLVSLDNVGIWNIRAEKLDNWYNGQEVYVKVADPLGYNVTEMIAPKXTLYCGLLKRHXKS 844

                   
Query: 183 QVHESNSK 206
             +   SK
Sbjct: 845 HRYXRTSK 868



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 261,572,867
Number of Sequences: 312970
Number of extensions: 4581909
Number of successful extensions: 106952
Number of sequences better than 1.0e-020: 2
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5084831801
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)