TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448655.2.1
(682 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA014369.1|CA014369 HT11C14r HT Hordeum vulgare subsp. v... 288 2e-077
gb|CK124192.1|CK124192 BES1824107f16 BES1824 Hordeum vulgar... 260 1e-070
gb|BI957483.1|BI957483 HVSMEn0009N04f Hordeum vulgare rachi... 248 2e-065
gb|BQ468531.1|BQ468531 HM01I09T HM Hordeum vulgare subsp. v... 246 8e-065
gb|BM816351.1|BM816351 HB106B06_SK.ab1 HB Hordeum vulgare s... 244 3e-064
gb|BM816352.1|BM816352 HB106C03_SK.ab1 HB Hordeum vulgare s... 244 3e-064
gb|BJ456266.1|BJ456266 BJ456266 K. Sato unpublished cDNA li... 244 3e-064
gb|CA010209.1|CA010209 HT11C14u HT Hordeum vulgare subsp. v... 239 1e-062
gb|BM445019.2|BM445019 EBem09_SQ007_D04_R embryo, 1 Day ger... 211 3e-054
gb|AL511115.1|AL511115 AL511115 Hordeum vulgare Barke devel... 209 1e-053
gb|BU980982.1|BU980982 HA22E16r HA Hordeum vulgare subsp. v... 154 3e-050
gb|BF622942.3|BF622942 HVSMEa0012C24f Hordeum vulgare seedl... 177 4e-044
gb|AL507854.1|AL507854 AL507854 Hordeum vulgare Barke devel... 140 6e-033
gb|CV064104.1|CV064104 BNEL98b1 Barley EST endosperm librar... 137 8e-032
gb|BF622107.2|BF622107 HVSMEa0001M11f Hordeum vulgare seedl... 120 1e-026
gb|CA009082.1|CA009082 HU13C01r HU Hordeum vulgare subsp. v... 120 1e-026
gb|BG415905.2|BG415905 HVSMEk0008P01f Hordeum vulgare testa... 86 1e-025
gb|BU995027.1|BU995027 HM08P11r HM Hordeum vulgare subsp. v... 115 3e-025
gb|BU995276.1|BU995276 HM09L23r HM Hordeum vulgare subsp. v... 115 3e-025
gb|BJ453141.1|BJ453141 BJ453141 K. Sato unpublished cDNA li... 113 8e-025
gb|BJ460691.1|BJ460691 BJ460691 K. Sato unpublished cDNA li... 113 8e-025
gb|CA019419.1|CA019419 HV11O17r HV Hordeum vulgare subsp. v... 113 1e-024
>gb|CA014369.1|CA014369 HT11C14r HT Hordeum vulgare subsp. vulgare cDNA clone HT11C14
5-PRIME, mRNA sequence
Length = 644
Score = 288 bits (623), Expect = 2e-077
Identities = 107/117 (91%), Positives = 113/117 (96%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+TAPIGFAAPYAHWAEVLILGIPSF GPAI PGHMITFWLWIILRQ+EAI+THSGF
Sbjct: 292 IHHEYTAPIGFAAPYAHWAEVLILGIPSFAGPAIAPGHMITFWLWIILRQMEAIDTHSGF 471
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYL 352
DFPF+ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTD+GYRFHK YL
Sbjct: 472 DFPFSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDRGYRFHKAYL 642
Score = 229 bits (495), Expect = 1e-059
Identities = 99/116 (85%), Positives = 105/116 (90%)
Frame = -2 / -1
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
A+ LWNL*PLSVPY+*SQ VKTEAKLLWLWPPT****SWYSAPP*NGIYFV +NGKSKP
Sbjct: 644 AK*ALWNL*PLSVPYR*SQYVKTEAKLLWLWPPT****SWYSAPP*NGIYFVRLNGKSKP 465
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW 7
LCVS+AS *RSIIQSQ VIMWPG MAGP KEGMPS+STSAQ AYGAA P+GAV SW
Sbjct: 464 LCVSMASI*RSIIQSQKVIMWPGAMAGPAKEGMPSMSTSAQ*AYGAAKPMGAVYSW 297
Score = 182 bits (393), Expect = 1e-045
Identities = 76/117 (64%), Positives = 91/117 (77%)
Frame = -1 / -3
Query: 352 *VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAA 173
*V VESV V I VITV ENRSKIALALAS ++MI+MVFCSSIE NILC+ EWEIK A
Sbjct: 642 *VSLVESVASVGPIQVITVRENRSKIALALASNVVMIIMVFCSSIERNILCQAEWEIKTA 463
Query: 172 MCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCESYWRSELMVN 2
+C++ HLT+YNPEPE +HVAW NG EGGDA+Y+HL PV +W CE+ R L+V+
Sbjct: 462 VCVNGFHLTKYNPEPEGNHVAWCNGRASEGGDAKYEHLCPVSVWRCEANGRGVLVVD 292
Score = 167 bits (359), Expect = 6e-041
Identities = 73/116 (62%), Positives = 86/116 (74%)
Frame = +1 / +3
Query: 7 P*VHCANRIRSSICTLG*GADTRHPLLRRASHCSRPHDHILALDYTPSGGGYRDT*RL*F 186
P VH A+ +RS+I +LG GA T HPLLR HC+RPHD++LALDYT S G + T R *F
Sbjct: 297 PRVHRAHWLRSAIRSLGRGAHTWHPLLRWPGHCTRPHDYLLALDYTSSDGSH*HTQRF*F 476
Query: 187 PIHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCFHXXXXXIWH*QRLQIPQNIPS 354
PI PDKVYS+LWRSRIP*LSSL RP+P+QFCF FH +W QRLQIPQ + S
Sbjct: 477 PIQPDKVYSVLWRSRIP*LSSLRWRPKPEQFCFGFHVL*LPVWDRQRLQIPQGLLS 644
Score = 164 bits (353), Expect = 4e-040
Identities = 73/112 (65%), Positives = 82/112 (73%)
Frame = -3 / -2
Query: 341 CGICNLCQCHISNHSK*KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGNQSRYVSR 162
CGIC+LC+ H NHS *K KQNC G GL +DD+HGILLLHR EYTLSG*MGNQ+R V +
Sbjct: 631 CGICSLCRSHTGNHST*KPKQNCSGFGLQRSDDNHGILLLHRTEYTLSG*MGNQNRCVCQ 452
Query: 161 *PPPDGV*SRARM*SCGLEQWLARRRRGCRVSAPQPSVHMELRILLAQ*THG 6
P D V*SRAR *SCGL QW +RRRGC+V AP PS M LR A+ T G
Sbjct: 451 WLPSDEV*SRARR*SCGLVQWPGQRRRGCQV*APLPSERMALRSQWARCTRG 296
Score = 144 bits (308), Expect = 7e-034
Identities = 73/116 (62%), Positives = 80/116 (68%)
Frame = +3 / +2
Query: 6 TMSSLRQ*DSQLHMHTGLRC*YSASPPSSGQPLFQAT*SHSGSGLYSVRWRLSRHIAALI 185
T S+ R SQ H TG RC Y ASPPS +PL QAT* SGSGLY VRW+ H A LI
Sbjct: 296 TTSTPRPLASQRHTLTGQRCSYLASPPSLARPLHQAT*LPSGSGLYFVRWKPLTHTAVLI 475
Query: 186 SHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYMALTKVTDSTKHT* 353
SHS QSIF SMEEQNTM II EA+A+AILL FS TVIT M T+ TDST+ T*
Sbjct: 476 SHSA*QSIFRSMEEQNTMIIITTLEAKARAILLRFSRTVITCMGPTEATDSTRLT* 643
>gb|CK124192.1|CK124192 BES1824107f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F167 5-PRIME, mRNA sequence
Length = 823
Score = 260 bits (562), Expect(2) = 1e-070
Identities = 97/105 (92%), Positives = 102/105 (97%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+TAPIGFAAPYAHWAEVLILGIPSF GPAI PGHMITFWLWIILRQ+EAI+THSGF
Sbjct: 482 IHHEYTAPIGFAAPYAHWAEVLILGIPSFAGPAIAPGHMITFWLWIILRQMEAIDTHSGF 661
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYG 316
DFPF+ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYG
Sbjct: 662 DFPFSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYG 796
Score = 208 bits (448), Expect(2) = 4e-055
Identities = 89/103 (86%), Positives = 94/103 (91%)
Frame = -2 / -2
Query: 315 PYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPLCVSIAST*RSII 136
PY+*SQ VKTEAKLLWLWPPT****SWYSAPP*NGIYFV +NGKSKPLCVS+AS *RSII
Sbjct: 795 PYR*SQYVKTEAKLLWLWPPT****SWYSAPP*NGIYFVRLNGKSKPLCVSMASI*RSII 616
Query: 135 QSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW 7
QSQ VIMWPG MAGP KEGMPS+STSAQ AYGAA P+GAV SW
Sbjct: 615 QSQKVIMWPGAMAGPAKEGMPSMSTSAQ*AYGAAKPMGAVYSW 487
Score = 172 bits (371), Expect(2) = 2e-043
Identities = 68/102 (66%), Positives = 83/102 (81%)
Frame = -1 / -1
Query: 307 VITVSENRSKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEP 128
VITV ENRSKIALALAS ++MI+MVFCSSIE NILC+ EWEIK A+C++ HLT+YNPEP
Sbjct: 787 VITVRENRSKIALALASNVVMIIMVFCSSIERNILCQAEWEIKTAVCVNGFHLTKYNPEP 608
Query: 127 ECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCESYWRSELMVN 2
E +HVAW NG EGGDA+Y+HL PV +W CE+ R L+V+
Sbjct: 607 EGNHVAWCNGRASEGGDAKYEHLCPVSVWRCEANGRGVLVVD 482
Score = 152 bits (326), Expect = 2e-036
Identities = 65/103 (63%), Positives = 77/103 (74%)
Frame = +1 / +1
Query: 7 P*VHCANRIRSSICTLG*GADTRHPLLRRASHCSRPHDHILALDYTPSGGGYRDT*RL*F 186
P VH A+ +RS+I +LG GA T HPLLR HC+RPHD++LALDYT S G + T R *F
Sbjct: 487 PRVHRAHWLRSAIRSLGRGAHTWHPLLRWPGHCTRPHDYLLALDYTSSDGSH*HTQRF*F 666
Query: 187 PIHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCFHXXXXXIW 315
PI PDKVYS+LWRSRIP*LSSL RP+P+QFCF FH +W
Sbjct: 667 PIQPDKVYSVLWRSRIP*LSSLRWRPKPEQFCFGFHVL*LPVW 795
Score = 145 bits (311), Expect = 3e-034
Identities = 67/103 (65%), Positives = 74/103 (71%)
Frame = -3 / -3
Query: 314 HISNHSK*KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGNQSRYVSR*PPPDGV*S 135
H NHS *K KQNC G GL +DD+HGILLLHR EYTLSG*MGNQ+R V + P D V*S
Sbjct: 794 HTGNHST*KPKQNCSGFGLQRSDDNHGILLLHRTEYTLSG*MGNQNRCVCQWLPSDEV*S 615
Query: 134 RARM*SCGLEQWLARRRRGCRVSAPQPSVHMELRILLAQ*THG 6
RAR *SCGL QW +RRRGC+V AP PS M LR A+ T G
Sbjct: 614 RARR*SCGLVQWPGQRRRGCQV*APLPSERMALRSQWARCTRG 486
Score = 131 bits (280), Expect = 5e-030
Identities = 66/103 (64%), Positives = 71/103 (68%)
Frame = +3 / +3
Query: 6 TMSSLRQ*DSQLHMHTGLRC*YSASPPSSGQPLFQAT*SHSGSGLYSVRWRLSRHIAALI 185
T S+ R SQ H TG RC Y ASPPS +PL QAT* SGSGLY VRW+ H A LI
Sbjct: 486 TTSTPRPLASQRHTLTGQRCSYLASPPSLARPLHQAT*LPSGSGLYFVRWKPLTHTAVLI 665
Query: 186 SHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYM 314
SHS QSIF SMEEQNTM II EA+A+AILL FS TVIT M
Sbjct: 666 SHSA*QSIFRSMEEQNTMIIITTLEAKARAILLRFSRTVITCM 794
Score = 26.7 bits (52), Expect(2) = 4e-055
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -2 / -1
Query: 342 LWNL*PLSVP 313
LWNL*PLSVP
Sbjct: 823 LWNL*PLSVP 794
Score = 26.3 bits (51), Expect(2) = 1e-070
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +3
Query: 314 GTDKGYRFH 340
GTD+GYRFH
Sbjct: 795 GTDRGYRFH 821
Score = 22.6 bits (43), Expect(2) = 2e-043
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = -3 / -2
Query: 341 CGICNLCQ 318
CGIC+LC+
Sbjct: 822 CGICSLCR 799
>gb|BI957483.1|BI957483 HVSMEn0009N04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009N04f, mRNA sequence
Length = 658
Score = 248 bits (537), Expect = 2e-065
Identities = 92/119 (77%), Positives = 104/119 (87%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHEFTAP+G+AAPYAHWAEVLILG+P+F GPAIVP HM T WLW +LR +EAI+ HSGF
Sbjct: 252 VHHEFTAPVGYAAPYAHWAEVLILGVPAFTGPAIVPCHMTTLWLWFVLRHLEAIDIHSGF 431
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAK 358
+FPF PTK IPFYGGAE+HDYHH V QSQSNF+SVFT+CDYLYGTDKGY+ HK LAK
Sbjct: 432 NFPFNPTKLIPFYGGAEHHDYHHRV*RQSQSNFSSVFTFCDYLYGTDKGYKHHKASLAK 608
Score = 172 bits (370), Expect = 2e-042
Identities = 82/118 (69%), Positives = 87/118 (73%)
Frame = -2 / -1
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
AR LW L PLSVPYK*SQ VKTE KLLWL T * *SW SAPP*NGI FVG+NGK P
Sbjct: 604 ARLALWCLYPLSVPYK*SQKVKTEEKLLWLCLHTR*W*SWCSAPP*NGISFVGLNGKLNP 425
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
L +S+AS RS QS V+MW GTMAGP K G P +STSAQCA GAA P GAVNSW T
Sbjct: 424 LWMSMASRWRSTNQSHKVVMWQGTMAGPVKAGTPRMSTSAQCA*GAA*PTGAVNSWWT 251
Score = 137 bits (293), Expect = 8e-032
Identities = 61/125 (48%), Positives = 83/125 (66%)
Frame = -1 / -3
Query: 376 MPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCSSIEWNILCR 197
+P LC* CFV V F+ +I V+T ENR ++ALAL SY +M+VMVFC S+E + LCR
Sbjct: 626 LPISQALC*ACFVVFVPFICSIQVVTEGENRREVALALPSYTVMVVMVFCPSVERDKLCR 447
Query: 196 GEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCESYWRS 17
EWE++ A+ + L + +Y PEP HVA +NG EGGDAE +HL PV I ++ R
Sbjct: 446 VEWEVEPAVDVYGLEVAQYEPEP*GGHVAGHNGGASEGGDAEDEHLCPVRIGRGVAHGRR 267
Query: 16 ELMVN 2
EL+V+
Sbjct: 266 ELVVD 252
Score = 124 bits (265), Expect = 6e-028
Identities = 54/117 (46%), Positives = 69/117 (58%)
Frame = +1 / +2
Query: 7 P*VHCANRIRSSICTLG*GADTRHPLLRRASHCSRPHDHILALDYTPSGGGYRDT*RL*F 186
P VH A +R ++C LG GA R P L HC+ PHDH++AL T G+R R+
Sbjct: 257 PRVHGARGLRRALCALGRGAHPRRPRLHWPRHCALPHDHLMALVRTAPPRGHRHPQRVQL 436
Query: 187 PIHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCFHXXXXXIWH*QRLQIPQNIPSK 357
PI PDK Y +L R R P*L S C + EP+Q FCFH +W+ R+Q PQ+ PSK
Sbjct: 437 PIQPDKAYPVLRRGRTP*LPSPCMKAEPEQLLFCFHLL*LLVWNR*RVQTPQSKPSK 607
Score = 111 bits (237), Expect = 4e-024
Identities = 56/119 (47%), Positives = 69/119 (57%)
Frame = -3 / -2
Query: 362 SALLGMFCGICNLCQCHISNHSK*KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGN 183
S+LLG+ CG+C L H S+H +*KQK++C GS +H D SHG+L L R LSG*MG+
Sbjct: 612 SSLLGLLCGVCTLYLFHTSSHRR*KQKRSCSGSAFIHGDGSHGVLPLRRTG*ALSG*MGS 433
Query: 182 QSRYVSR*PPPDGV*SRARM*SCGLEQWLARRRRGCRVSAPQPSVHMELRILLAQ*THG 6
+R P V +RA SCG QW + RRG R AP PS H R A *T G
Sbjct: 432 *TRCGCLWPRGGAVRTRAIRWSCGRAQWRGQ*RRGRRG*APLPSAHRARRSPRAP*TRG 256
>gb|BQ468531.1|BQ468531 HM01I09T HM Hordeum vulgare subsp. vulgare cDNA clone HM01I09
5-PRIME, mRNA sequence
Length = 640
Score = 246 bits (532), Expect = 8e-065
Identities = 90/135 (66%), Positives = 107/135 (79%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHEFTAP+ +AA Y HWAE+LIL +PS GPA+VP H+ T W+W R VE++ HSGF
Sbjct: 220 VHHEFTAPMAYAAWYGHWAEMLILAVPSLAGPALVPCHVTTLWIWFAARLVESLNIHSGF 399
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
PF KYIPFYGGAE+HDYHHY+GGQS+SNFA VFTYCDY+YGTDKGYR+HK LAKL
Sbjct: 400 KLPFNAEKYIPFYGGAEHHDYHHYIGGQSKSNFAPVFTYCDYIYGTDKGYRYHKATLAKL 579
Query: 362 KDLGHNDGEKGDGSG 406
K+L ND +KG +G
Sbjct: 580 KELAGNDVQKGVDNG 624
Score = 152 bits (327), Expect = 2e-036
Identities = 75/118 (63%), Positives = 83/118 (70%)
Frame = -2 / -3
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
AR L L*PLSVPY *SQ*VKT AKLL L PP ** *SW SAPP*NG+YF +NG P
Sbjct: 572 ARVAL*YL*PLSVPYM*SQ*VKTGAKLLLLCPPM**W*SWCSAPP*NGMYFSALNGNLNP 393
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
LC+ ST R+ Q Q+V+ W GT AGP KEG +S SAQC Y AA +GAVNSW*T
Sbjct: 392 LCMLRLSTKRAANQIQSVVTWHGTSAGPAKEGTARMSISAQCPYHAA*AMGAVNSW*T 219
Score = 144 bits (309), Expect = 5e-034
Identities = 62/135 (45%), Positives = 91/135 (67%)
Frame = -1 / -2
Query: 406 SAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFC 227
S SFL ++ Q+LQLC C V SV F+ ++ VITV ENR ++ALAL+SY++M+VMV C
Sbjct: 624 SVVDSFLNVVSCQLLQLCQGCLVISVAFIRSVYVITVGENRGEVALALSSYVVMVVMVLC 445
Query: 226 SSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVC 47
S+EW +L EW++K+AM +++L+ T P+PE ++AW+ +GG + +HLSPV
Sbjct: 444 PSVEWYVLLSVEWQLKSAMYVEALNQTCCKPDPERGNMAWDECRAGQGGHRKDEHLSPVS 265
Query: 46 IWSCESYWRSELMVN 2
I + R ELMVN
Sbjct: 264 IPCGIGHGRRELMVN 220
Score = 105 bits (223), Expect = 3e-022
Identities = 63/135 (46%), Positives = 70/135 (51%)
Frame = +3 / +2
Query: 3 FTMSSLRQ*DSQLHMHTGLRC*YSASPPSSGQPLFQAT*SHSGSGLYSVRWRLSRHIAAL 182
FTMSS R M TGLRC PP A SGSGL V R S +IA L
Sbjct: 221 FTMSSRRPWPMPHGMDTGLRCSSLRCPPWPALHSSHAMLPRSGSGLQHVWLRASTYIADL 400
Query: 183 ISHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYMALTKVTDSTKHT*QS* 362
HS +S +HS E Q+TMT I *E RA+A LFS TVITY K TD T+ QS*
Sbjct: 401 SCHSTLRSTYHSTEGQSTMTTITT*EDRARATSPLFSPTVITYTERIKATDITRQPWQS* 580
Query: 363 RIWGIMMARKETAAD 407
R W RKE+ D
Sbjct: 581 RSWQETTFRKESTTD 625
Score = 104 bits (221), Expect = 7e-022
Identities = 60/135 (44%), Positives = 75/135 (55%)
Frame = -3 / -1
Query: 407 VRCRLLSRHHYAPDPSALLGMFCGICNLCQCHISNHSK*KQKQNCFGSGLLHNDDSHGIL 228
+RCRLLS + P PSAL G+ C IC+L I NHS+*KQ ++C S LL +D SHG L
Sbjct: 625 IRCRLLSERRFLPTPSALPGLPCDICSLYPFRICNHSR*KQGRSCSCSVLLCSDGSHGAL 446
Query: 227 LLHRMEYTLSG*MGNQSRYVSR*PPPDGV*SRARM*SCGLEQWLARRRRGCRVSAPQPSV 48
L RM T *M RYV P+ + +R+R G+ + R RR + A QPSV
Sbjct: 445 PLRRMVCTSQR*MAT*IRYVC*GSQPNVLQTRSRAW*HGMGRVQGRPRRAPQG*ASQPSV 266
Query: 47 HMELRILLAQ*THGE 3
H A *THGE
Sbjct: 265 HTMRHRPWAP*THGE 221
>gb|BM816351.1|BM816351 HB106B06_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106B06_SK.ab1 similar to (AC022464) F22G5.23
[Arabidopsis thaliana],(AC025783) putative C-4 sterol
methyl oxidase [Oryza sativa], mRNA sequence
Length = 918
Score = 244 bits (528), Expect = 3e-064
Identities = 89/135 (65%), Positives = 107/135 (79%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHEFTAP+ +AA Y HWAE+LIL +PS GPA+VP H+ T W+W R VE++ HSGF
Sbjct: 244 VHHEFTAPMAYAAWYGHWAEMLILAVPSLAGPALVPCHVTTLWIWFAARLVESLNIHSGF 423
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
PF KYIPFYGGAE+HDYHHY+GGQS+SNFA VFTYCDY+YGTDKGYR+HK LAKL
Sbjct: 424 KLPFNAEKYIPFYGGAEHHDYHHYIGGQSKSNFAPVFTYCDYIYGTDKGYRYHKATLAKL 603
Query: 362 KDLGHNDGEKGDGSG 406
K+L N+ +KG +G
Sbjct: 604 KELAGNEVQKGVDNG 648
Score = 152 bits (327), Expect = 2e-036
Identities = 75/118 (63%), Positives = 83/118 (70%)
Frame = -2 / -2
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
AR L L*PLSVPY *SQ*VKT AKLL L PP ** *SW SAPP*NG+YF +NG P
Sbjct: 596 ARVAL*YL*PLSVPYM*SQ*VKTGAKLLLLCPPM**W*SWCSAPP*NGMYFSALNGNLNP 417
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
LC+ ST R+ Q Q+V+ W GT AGP KEG +S SAQC Y AA +GAVNSW*T
Sbjct: 416 LCMLRLSTKRAANQIQSVVTWHGTSAGPAKEGTARMSISAQCPYHAA*AMGAVNSW*T 243
Score = 144 bits (308), Expect = 7e-034
Identities = 62/135 (45%), Positives = 91/135 (67%)
Frame = -1 / -1
Query: 406 SAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFC 227
S SFL ++ Q+LQLC C V SV F+ ++ VITV ENR ++ALAL+SY++M+VMV C
Sbjct: 648 SVVDSFLNLVSCQLLQLCQGCLVISVAFIRSVYVITVGENRGEVALALSSYVVMVVMVLC 469
Query: 226 SSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVC 47
S+EW +L EW++K+AM +++L+ T P+PE ++AW+ +GG + +HLSPV
Sbjct: 468 PSVEWYVLLSVEWQLKSAMYVEALNQTCCKPDPERGNMAWDECRAGQGGHRKDEHLSPVS 289
Query: 46 IWSCESYWRSELMVN 2
I + R ELMVN
Sbjct: 288 IPCGIGHGRRELMVN 244
Score = 105 bits (223), Expect = 3e-022
Identities = 62/143 (43%), Positives = 77/143 (53%)
Frame = -3 / -3
Query: 431 SNPVSHSWVRCRLLSRHHYAPDPSALLGMFCGICNLCQCHISNHSK*KQKQNCFGSGLLH 252
S P +RCRLLS + P PSAL G+ C IC+L I NHS+*KQ ++C S LL
Sbjct: 673 STPAFRC*IRCRLLSEPRFLPTPSALPGLPCDICSLYPFRICNHSR*KQGRSCSCSVLLC 494
Query: 251 NDDSHGILLLHRMEYTLSG*MGNQSRYVSR*PPPDGV*SRARM*SCGLEQWLARRRRGCR 72
+D SHG L L RM T *M RYV P+ + +R+R G+ + R RR +
Sbjct: 493 SDGSHGALPLRRMVCTSQR*MAT*IRYVC*GSQPNVLQTRSRAW*HGMGRVQGRPRRAPQ 314
Query: 71 VSAPQPSVHMELRILLAQ*THGE 3
A QPSVH A *THGE
Sbjct: 313 G*ASQPSVHTMRHRPWAP*THGE 245
Score = 105 bits (223), Expect = 3e-022
Identities = 63/135 (46%), Positives = 70/135 (51%)
Frame = +3 / +2
Query: 3 FTMSSLRQ*DSQLHMHTGLRC*YSASPPSSGQPLFQAT*SHSGSGLYSVRWRLSRHIAAL 182
FTMSS R M TGLRC PP A SGSGL V R S +IA L
Sbjct: 245 FTMSSRRPWPMPHGMDTGLRCSSLRCPPWPALHSSHAMLPRSGSGLQHVWLRASTYIADL 424
Query: 183 ISHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYMALTKVTDSTKHT*QS* 362
HS +S +HS E Q+TMT I *E RA+A LFS TVITY K TD T+ QS*
Sbjct: 425 SCHSTLRSTYHSTEGQSTMTTITT*EDRARATSPLFSPTVITYTERIKATDITRQPWQS* 604
Query: 363 RIWGIMMARKETAAD 407
R W RKE+ D
Sbjct: 605 RSWQETRFRKESTTD 649
>gb|BM816352.1|BM816352 HB106C03_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106C03_SK.ab1 similar to (AC022464) F22G5.23
[Arabidopsis thaliana],(AC025783) putative C-4 sterol
methyl oxidase [Oryza sativa], mRNA sequence
Length = 903
Score = 244 bits (528), Expect = 3e-064
Identities = 89/135 (65%), Positives = 107/135 (79%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHEFTAP+ +AA Y HWAE+LIL +PS GPA+VP H+ T W+W R VE++ HSGF
Sbjct: 161 VHHEFTAPMAYAAWYGHWAEMLILAVPSLAGPALVPCHVTTLWIWFAARLVESLNIHSGF 340
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
PF KYIPFYGGAE+HDYHHY+GGQS+SNFA VFTYCDY+YGTDKGYR+HK LAKL
Sbjct: 341 KLPFNAEKYIPFYGGAEHHDYHHYIGGQSKSNFAPVFTYCDYIYGTDKGYRYHKATLAKL 520
Query: 362 KDLGHNDGEKGDGSG 406
K+L N+ +KG +G
Sbjct: 521 KELAGNEVQKGVDNG 565
Score = 152 bits (327), Expect = 2e-036
Identities = 75/118 (63%), Positives = 83/118 (70%)
Frame = -2 / -1
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
AR L L*PLSVPY *SQ*VKT AKLL L PP ** *SW SAPP*NG+YF +NG P
Sbjct: 513 ARVAL*YL*PLSVPYM*SQ*VKTGAKLLLLCPPM**W*SWCSAPP*NGMYFSALNGNLNP 334
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
LC+ ST R+ Q Q+V+ W GT AGP KEG +S SAQC Y AA +GAVNSW*T
Sbjct: 333 LCMLRLSTKRAANQIQSVVTWHGTSAGPAKEGTARMSISAQCPYHAA*AMGAVNSW*T 160
Score = 146 bits (314), Expect = 1e-034
Identities = 66/154 (42%), Positives = 97/154 (62%)
Frame = -1 / -3
Query: 463 *KHSRCTISCNLIQFHIAGSAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENR 284
* H +S L+ S SFL ++ Q+LQLC C V SV F+ ++ VITV ENR
Sbjct: 622 *SHLSLCLSLFLLLLSAVESVVDSFLNLVSCQLLQLCQGCLVISVAFIRSVYVITVGENR 443
Query: 283 SKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWN 104
++ALAL+SY++M+VMV C S+EW +L EW++K+AM +++L+ T P+PE ++AW+
Sbjct: 442 GEVALALSSYVVMVVMVLCPSVEWYVLLSVEWQLKSAMYVEALNQTCCKPDPERGNMAWD 263
Query: 103 NGWPDEGGDAEYQHLSPVCIWSCESYWRSELMVN 2
+GG + +HLSPV I + R ELMVN
Sbjct: 262 ECRAGQGGHRKDEHLSPVSIPCGIGHGRRELMVN 161
Score = 105 bits (223), Expect = 3e-022
Identities = 62/143 (43%), Positives = 77/143 (53%)
Frame = -3 / -2
Query: 431 SNPVSHSWVRCRLLSRHHYAPDPSALLGMFCGICNLCQCHISNHSK*KQKQNCFGSGLLH 252
S P +RCRLLS + P PSAL G+ C IC+L I NHS+*KQ ++C S LL
Sbjct: 590 STPAFRC*IRCRLLSEPRFLPTPSALPGLPCDICSLYPFRICNHSR*KQGRSCSCSVLLC 411
Query: 251 NDDSHGILLLHRMEYTLSG*MGNQSRYVSR*PPPDGV*SRARM*SCGLEQWLARRRRGCR 72
+D SHG L L RM T *M RYV P+ + +R+R G+ + R RR +
Sbjct: 410 SDGSHGALPLRRMVCTSQR*MAT*IRYVC*GSQPNVLQTRSRAW*HGMGRVQGRPRRAPQ 231
Query: 71 VSAPQPSVHMELRILLAQ*THGE 3
A QPSVH A *THGE
Sbjct: 230 G*ASQPSVHTMRHRPWAP*THGE 162
Score = 105 bits (223), Expect = 3e-022
Identities = 63/135 (46%), Positives = 70/135 (51%)
Frame = +3 / +3
Query: 3 FTMSSLRQ*DSQLHMHTGLRC*YSASPPSSGQPLFQAT*SHSGSGLYSVRWRLSRHIAAL 182
FTMSS R M TGLRC PP A SGSGL V R S +IA L
Sbjct: 162 FTMSSRRPWPMPHGMDTGLRCSSLRCPPWPALHSSHAMLPRSGSGLQHVWLRASTYIADL 341
Query: 183 ISHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYMALTKVTDSTKHT*QS* 362
HS +S +HS E Q+TMT I *E RA+A LFS TVITY K TD T+ QS*
Sbjct: 342 SCHSTLRSTYHSTEGQSTMTTITT*EDRARATSPLFSPTVITYTERIKATDITRQPWQS* 521
Query: 363 RIWGIMMARKETAAD 407
R W RKE+ D
Sbjct: 522 RSWQETRFRKESTTD 566
>gb|BJ456266.1|BJ456266 BJ456266 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20f03 3', mRNA sequence
Length = 610
Score = 244 bits (528), Expect = 3e-064
Identities = 89/135 (65%), Positives = 107/135 (79%)
Frame = +2 / -1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHEFTAP+ +AA Y HWAE+LIL +PS GPA+VP H+ T W+W R VE++ HSGF
Sbjct: 547 VHHEFTAPMAYAAWYGHWAEMLILAVPSLAGPALVPCHVTTLWIWFAARLVESLNIHSGF 368
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
PF KYIPFYGGAE+HDYHHY+GGQS+SNFA VFTYCDY+YGTDKGYR+HK LAKL
Sbjct: 367 KLPFNAEKYIPFYGGAEHHDYHHYIGGQSKSNFAPVFTYCDYIYGTDKGYRYHKATLAKL 188
Query: 362 KDLGHNDGEKGDGSG 406
K+L N+ +KG +G
Sbjct: 187 KELAGNEVQKGVDNG 143
Score = 152 bits (327), Expect = 2e-036
Identities = 75/118 (63%), Positives = 83/118 (70%)
Frame = -2 / +3
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
AR L L*PLSVPY *SQ*VKT AKLL L PP ** *SW SAPP*NG+YF +NG P
Sbjct: 195 ARVAL*YL*PLSVPYM*SQ*VKTGAKLLLLCPPM**W*SWCSAPP*NGMYFSALNGNLNP 374
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
LC+ ST R+ Q Q+V+ W GT AGP KEG +S SAQC Y AA +GAVNSW*T
Sbjct: 375 LCMLRLSTKRAANQIQSVVTWHGTSAGPAKEGTARMSISAQCPYHAA*AMGAVNSW*T 548
Score = 146 bits (314), Expect = 1e-034
Identities = 66/154 (42%), Positives = 97/154 (62%)
Frame = -1 / +2
Query: 463 *KHSRCTISCNLIQFHIAGSAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENR 284
* H +S L+ S SFL ++ Q+LQLC C V SV F+ ++ VITV ENR
Sbjct: 86 *SHLSLCLSLFLLLLSAVESVVDSFLNLVSCQLLQLCQGCLVISVAFIRSVYVITVGENR 265
Query: 283 SKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWN 104
++ALAL+SY++M+VMV C S+EW +L EW++K+AM +++L+ T P+PE ++AW+
Sbjct: 266 GEVALALSSYVVMVVMVLCPSVEWYVLLSVEWQLKSAMYVEALNQTCCKPDPERGNMAWD 445
Query: 103 NGWPDEGGDAEYQHLSPVCIWSCESYWRSELMVN 2
+GG + +HLSPV I + R ELMVN
Sbjct: 446 ECRAGQGGHRKDEHLSPVSIPCGIGHGRRELMVN 547
Score = 105 bits (223), Expect = 3e-022
Identities = 62/143 (43%), Positives = 77/143 (53%)
Frame = -3 / +1
Query: 431 SNPVSHSWVRCRLLSRHHYAPDPSALLGMFCGICNLCQCHISNHSK*KQKQNCFGSGLLH 252
S P +RCRLLS + P PSAL G+ C IC+L I NHS+*KQ ++C S LL
Sbjct: 118 STPAFRC*IRCRLLSEPRFLPTPSALPGLPCDICSLYPFRICNHSR*KQGRSCSCSVLLC 297
Query: 251 NDDSHGILLLHRMEYTLSG*MGNQSRYVSR*PPPDGV*SRARM*SCGLEQWLARRRRGCR 72
+D SHG L L RM T *M RYV P+ + +R+R G+ + R RR +
Sbjct: 298 SDGSHGALPLRRMVCTSQR*MAT*IRYVC*GSQPNVLQTRSRAW*HGMGRVQGRPRRAPQ 477
Query: 71 VSAPQPSVHMELRILLAQ*THGE 3
A QPSVH A *THGE
Sbjct: 478 G*ASQPSVHTMRHRPWAP*THGE 546
Score = 105 bits (223), Expect = 3e-022
Identities = 63/135 (46%), Positives = 70/135 (51%)
Frame = +3 / -2
Query: 3 FTMSSLRQ*DSQLHMHTGLRC*YSASPPSSGQPLFQAT*SHSGSGLYSVRWRLSRHIAAL 182
FTMSS R M TGLRC PP A SGSGL V R S +IA L
Sbjct: 546 FTMSSRRPWPMPHGMDTGLRCSSLRCPPWPALHSSHAMLPRSGSGLQHVWLRASTYIADL 367
Query: 183 ISHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYMALTKVTDSTKHT*QS* 362
HS +S +HS E Q+TMT I *E RA+A LFS TVITY K TD T+ QS*
Sbjct: 366 SCHSTLRSTYHSTEGQSTMTTITT*EDRARATSPLFSPTVITYTERIKATDITRQPWQS* 187
Query: 363 RIWGIMMARKETAAD 407
R W RKE+ D
Sbjct: 186 RSWQETRFRKESTTD 142
>gb|CA010209.1|CA010209 HT11C14u HT Hordeum vulgare subsp. vulgare cDNA clone HT11C14
3-PRIME, mRNA sequence
Length = 549
Score = 239 bits (517), Expect = 1e-062
Identities = 94/113 (83%), Positives = 102/113 (90%)
Frame = +2 / -2
Query: 113 HMITFWLWIILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVF 292
HMITFWLWIILRQ+EAI+THSGFDFPF+ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVF
Sbjct: 548 HMITFWLWIILRQMEAIDTHSGFDFPFSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVF 369
Query: 293 TYCDYLYGTDKGYRFHKTYLAKLKDLGHNDGEKGDGSGPSYVKLD*IARYSAS 451
TYCDYLYGTD+GYRFHK YLAKLKDL +DG+K D +G SY KLD*+ SAS
Sbjct: 368 TYCDYLYGTDRGYRFHKAYLAKLKDLEPSDGKKEDANGFSYAKLD*MVL*SAS 210
Score = 172 bits (370), Expect = 2e-042
Identities = 78/135 (57%), Positives = 91/135 (67%)
Frame = +1 / -1
Query: 112 PHDHILALDYTPSGGGYRDT*RL*FPIHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCF 291
PHD++LALDYT S G + T R *FPI PDKVYS+LWRSRIP*LSSL RP+P+QFCF F
Sbjct: 549 PHDYLLALDYTSSDGSH*HTQRF*FPIQPDKVYSVLWRSRIP*LSSLRWRPKPEQFCFGF 370
Query: 292 HXXXXXIWH*QRLQIPQNIPSKAEGSGAXXXXXXXXXXTQLCETGLDCKI*CILSVSMVI 471
H +W QRLQIPQ + SK EG GA QLCE GLD I CILSVS++I
Sbjct: 369 HVL*LPVWDRQRLQIPQGLLSKVEGPGAKRRQERRCQWIQLCEVGLDGLIECILSVSLMI 190
Query: 472 DFTVAFRNGILLSWA 516
F+ ++LSWA
Sbjct: 189 LFSDGIVKIVMLSWA 145
Score = 166 bits (358), Expect = 8e-041
Identities = 77/134 (57%), Positives = 90/134 (67%)
Frame = -3 / +2
Query: 515 AQLSNIPFRNATVKSMTIETLKMHYILQSNPVSHSWVRCRLLSRHHYAPDPSALLGMFCG 336
AQL+ F ++ + ETL+MH I SNP SH+ + LLS AP PS LL CG
Sbjct: 146 AQLNITIFTMPSLNKIIRETLRMHSIRPSNPTSHN*IHWHLLSCRRLAPGPSTLLSKPCG 325
Query: 335 ICNLCQCHISNHSK*KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGNQSRYVSR*P 156
IC+LC+ H NHS *K KQNC G GL +DD+HGILLLHR EYTLSG*MGNQ+R V +
Sbjct: 326 ICSLCRSHTGNHST*KPKQNCSGFGLQRSDDNHGILLLHRTEYTLSG*MGNQNRCVCQWL 505
Query: 155 PPDGV*SRARM*SC 114
P D V*SRAR *SC
Sbjct: 506 PSDEV*SRARR*SC 547
Score = 164 bits (353), Expect = 4e-040
Identities = 72/116 (62%), Positives = 87/116 (75%)
Frame = -1 / +3
Query: 460 KHSRCTISCNLIQFHIAGSAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRS 281
+H CT+ +LIQ I S + FLA+ Q+LQLC*V VESV V I VITV ENRS
Sbjct: 201 RH*GCTL*DHLIQLRITESIGIFFLAVAWLQVLQLC*VSLVESVASVGPIQVITVRENRS 380
Query: 280 KIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLTEYNPEPECDHV 113
KIALALAS ++MI+MVFCSSIE NILC+ EWEIK A+C++ HLT+YNPEPE +HV
Sbjct: 381 KIALALASNVVMIIMVFCSSIERNILCQAEWEIKTAVCVNGFHLTKYNPEPEGNHV 548
Score = 162 bits (349), Expect(2) = 2e-041
Identities = 71/81 (87%), Positives = 75/81 (92%)
Frame = -2 / +1
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
A+ LWNL*PLSVPY+*SQ VKTEAKLLWLWPPT****SWYSAPP*NGIYFV +NGKSKP
Sbjct: 307 AK*ALWNL*PLSVPYR*SQYVKTEAKLLWLWPPT****SWYSAPP*NGIYFVRLNGKSKP 486
Query: 174 LCVSIAST*RSIIQSQNVIMW 112
LCVS+AS *RSIIQSQ VIMW
Sbjct: 487 LCVSMASI*RSIIQSQKVIMW 549
Score = 138 bits (296), Expect = 3e-032
Identities = 69/115 (60%), Positives = 77/115 (66%)
Frame = +3 / -3
Query: 114 T*SHSGSGLYSVRWRLSRHIAALISHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFS 293
T* SGSGLY VRW+ H A LISHS QSIF SMEEQNTM II EA+A+AILL FS
Sbjct: 547 T*LPSGSGLYFVRWKPLTHTAVLISHSA*QSIFRSMEEQNTMIIITTLEAKARAILLRFS 368
Query: 294 LTVITYMALTKVTDSTKHT*QS*RIWGIMMARKETAADPAM*NWIRLQDIVHLEC 458
TVIT M T+ TDST+ T*QS*R W ARK+ D M +WIR VH +C
Sbjct: 367 RTVITCMGPTEATDSTRLT*QS*RTWSQATARKKMPMDSVMRSWIRWSYRVHPQC 203
Score = 26.3 bits (51), Expect(2) = 2e-041
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2 / +1
Query: 540 TEMRTHVTSPTQQYPISKCHSEVDDHRNTQDALYLAI* 427
++ +++ T P Q +E D +T+DALY I*
Sbjct: 121 SQNKSYYTRPAQHNYFHNAITEQDHQGDTEDALYKTI* 234
>gb|BM445019.2|BM445019 EBem09_SQ007_D04_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_D04 5', mRNA sequence
Length = 340
Score = 211 bits (455), Expect = 3e-054
Identities = 75/109 (68%), Positives = 88/109 (80%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHEFTAP+ +AA Y HWAE+LIL +PS GPA+VP H+ T W+W R VE++ HSGF
Sbjct: 12 VHHEFTAPMAYAAWYGHWAEMLILAVPSLAGPALVPCHVTTLWIWFAARLVESLNIHSGF 191
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKG 328
PF KYIPFYGGAE+HDYHHY+GGQS+SNFA VFTYCDY+YGTDKG
Sbjct: 192 KLPFNAEKYIPFYGGAEHHDYHHYIGGQSKSNFAPVFTYCDYIYGTDKG 338
Score = 148 bits (317), Expect = 4e-035
Identities = 71/110 (64%), Positives = 79/110 (71%)
Frame = -2 / -1
Query: 330 *PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPLCVSIAST 151
*PLSVPY *SQ*VKT AKLL L PP ** *SW SAPP*NG+YF +NG PLC+ ST
Sbjct: 340 *PLSVPYM*SQ*VKTGAKLLLLCPPM**W*SWCSAPP*NGMYFSALNGNLNPLCMLRLST 161
Query: 150 *RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
R+ Q Q+V+ W GT AGP KEG +S SAQC Y AA +GAVNSW*T
Sbjct: 160 KRAANQIQSVVTWHGTSAGPAKEGTARMSISAQCPYHAA*AMGAVNSW*T 11
Score = 119 bits (254), Expect = 2e-026
Identities = 49/108 (45%), Positives = 75/108 (69%)
Frame = -1 / -3
Query: 325 FVSAI*VITVSENRSKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLT 146
F+ ++ VITV ENR ++ALAL+SY++M+VMV C S+EW +L EW++K+AM +++L+ T
Sbjct: 335 FIRSVYVITVGENRGEVALALSSYVVMVVMVLCPSVEWYVLLSVEWQLKSAMYVEALNQT 156
Query: 145 EYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCESYWRSELMVN 2
P+PE ++AW+ +GG + +HLSPV I + R ELMVN
Sbjct: 155 CCKPDPERGNMAWDECRAGQGGHRKDEHLSPVSIPCGIGHGRRELMVN 12
>gb|AL511115.1|AL511115 AL511115 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07A18u 3',
mRNA sequence
Length = 487
Score = 209 bits (451), Expect = 1e-053
Identities = 83/102 (81%), Positives = 91/102 (89%)
Frame = +2 / -1
Query: 146 RQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
RQ+EAI+THSGFDFPF+ TKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTD+
Sbjct: 487 RQMEAIDTHSGFDFPFSLTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDR 308
Query: 326 GYRFHKTYLAKLKDLGHNDGEKGDGSGPSYVKLD*IARYSAS 451
GYRFHK YLAKLKDL +DG+K D +G SY KLD*+ SAS
Sbjct: 307 GYRFHKAYLAKLKDLEPSDGKKEDANGFSYAKLD*MVL*SAS 182
Score = 151 bits (324), Expect = 4e-036
Identities = 68/123 (55%), Positives = 81/123 (65%)
Frame = -3 / +1
Query: 515 AQLSNIPFRNATVKSMTIETLKMHYILQSNPVSHSWVRCRLLSRHHYAPDPSALLGMFCG 336
AQL+ F ++ + ETL+MH I SNP SH+ + LLS AP PS LL CG
Sbjct: 118 AQLNITIFTMPSLNKIIRETLRMHSIRPSNPTSHN*IHWHLLSCRRLAPGPSTLLSKPCG 297
Query: 335 ICNLCQCHISNHSK*KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGNQSRYVSR*P 156
IC+LC+ H NHS *K KQNC G GL +DD+HGILLLHR EYTLSG*MGNQ+R V +
Sbjct: 298 ICSLCRSHTGNHST*KPKQNCSGFGLQRSDDNHGILLLHRTEYTLSG*MGNQNRCVCQWL 477
Query: 155 PPD 147
P D
Sbjct: 478 PSD 486
Score = 147 bits (316), Expect = 5e-035
Identities = 69/123 (56%), Positives = 80/123 (65%)
Frame = +1 / -3
Query: 148 SGGGYRDT*RL*FPIHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCFHXXXXXIWH*QR 327
S G + T R *FPI PDKVYS+LWRSRIP*LSSL RP+P+QFCF FH +W QR
Sbjct: 485 SDGSH*HTQRF*FPIQPDKVYSVLWRSRIP*LSSLRWRPKPEQFCFGFHVL*LPVWDRQR 306
Query: 328 LQIPQNIPSKAEGSGAXXXXXXXXXXTQLCETGLDCKI*CILSVSMVIDFTVAFRNGILL 507
LQIPQ + SK EG GA QLCE GLD I CILSVS++I F+ ++L
Sbjct: 305 LQIPQGLLSKVEGPGAKRRQERRCQWIQLCEVGLDGLIECILSVSLMILFSDGIVKIVML 126
Query: 508 SWA 516
SWA
Sbjct: 125 SWA 117
Score = 142 bits (305), Expect = 2e-033
Identities = 64/105 (60%), Positives = 77/105 (73%)
Frame = -1 / +2
Query: 460 KHSRCTISCNLIQFHIAGSAAVSFLAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRS 281
+H CT+ +LIQ I S + FLA+ Q+LQLC*V VESV V I VITV ENRS
Sbjct: 173 RH*GCTL*DHLIQLRITESIGIFFLAVAWLQVLQLC*VSLVESVASVGPIQVITVRENRS 352
Query: 280 KIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAAMCLDSLHLT 146
KIALALAS ++MI+MVFCSSIE NILC+ EWEIK A+C++ HLT
Sbjct: 353 KIALALASNVVMIIMVFCSSIERNILCQAEWEIKTAVCVNGFHLT 487
Score = 137 bits (294), Expect(2) = 2e-033
Identities = 59/67 (88%), Positives = 63/67 (94%)
Frame = -2 / +3
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
A+ LWNL*PLSVPY+*SQ VKTEAKLLWLWPPT****SWYSAPP*NGIYFV +NGKSKP
Sbjct: 279 AK*ALWNL*PLSVPYR*SQYVKTEAKLLWLWPPT****SWYSAPP*NGIYFVRLNGKSKP 458
Query: 174 LCVSIAS 154
LCVS+AS
Sbjct: 459 LCVSMAS 479
Score = 124 bits (265), Expect = 6e-028
Identities = 61/104 (58%), Positives = 69/104 (66%)
Frame = +3 / -2
Query: 147 VRWRLSRHIAALISHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYMALTK 326
VRW+ H A LISHS QSIF SMEEQNTM II EA+A+AILL FS TVIT M T+
Sbjct: 486 VRWKPLTHTAVLISHSA*QSIFRSMEEQNTMIIITTLEAKARAILLRFSRTVITCMGPTE 307
Query: 327 VTDSTKHT*QS*RIWGIMMARKETAADPAM*NWIRLQDIVHLEC 458
TDST+ T*QS*R W ARK+ D M +WIR VH +C
Sbjct: 306 ATDSTRLT*QS*RTWSQATARKKMPMDSVMRSWIRWSYRVHPQC 175
Score = 26.3 bits (51), Expect(2) = 2e-033
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2 / +3
Query: 540 TEMRTHVTSPTQQYPISKCHSEVDDHRNTQDALYLAI* 427
++ +++ T P Q +E D +T+DALY I*
Sbjct: 93 SQNKSYYTRPAQHNYFHNAITEQDHQGDTEDALYKTI* 206
>gb|BU980982.1|BU980982 HA22E16r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E16
5-PRIME, mRNA sequence
Length = 644
Score = 154 bits (330), Expect(2) = 3e-050
Identities = 58/68 (85%), Positives = 62/68 (91%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+TAPIGFAAPYAHWAEVLILGIPSF GPAI PGHMITFWLWIILRQ+EAI+THSGF
Sbjct: 394 IHHEYTAPIGFAAPYAHWAEVLILGIPSFAGPAIAPGHMITFWLWIILRQMEAIDTHSGF 573
Query: 182 DFPFTPTK 205
FP P K
Sbjct: 574 *FPIQPDK 597
Score = 114 bits (243), Expect(2) = 5e-035
Identities = 48/61 (78%), Positives = 51/61 (83%)
Frame = -2 / -1
Query: 189 GKSKPLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
G PLCVS+AS *RSIIQSQ VIMWPG MAGP KEGMPS+STSAQ AYGAA P+GAV S
Sbjct: 581 GNQXPLCVSMASI*RSIIQSQKVIMWPGAMAGPAKEGMPSMSTSAQ*AYGAAKPMGAVYS 402
Query: 9 W 7
W
Sbjct: 401 W 399
Score = 95.0 bits (201), Expect(2) = 1e-028
Identities = 34/60 (56%), Positives = 45/60 (75%)
Frame = -1 / -3
Query: 181 KAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCESYWRSELMVN 2
K A+C++ HLT+YNPEPE +HVAW NG EGGDA+Y+HL PV +W CE+ R L+V+
Sbjct: 573 KXAVCVNGFHLTKYNPEPEGNHVAWCNGRASEGGDAKYEHLCPVSVWRCEANGRGVLVVD 394
Score = 75.3 bits (158), Expect(2) = 5e-023
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = +1 / +3
Query: 7 P*VHCANRIRSSICTLG*GADTRHPLLRRASHCSRPHDHILALDYTPSGGGYRDT*R 177
P VH A+ +RS+I +LG GA T HPLLR HC+RPHD++LALDYT S G + T R
Sbjct: 399 PRVHRAHWLRSAIRSLGRGAHTWHPLLRWPGHCTRPHDYLLALDYTSSDGSH*HTQR 569
Score = 64.8 bits (135), Expect(2) = 3e-050
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +2 / +2
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHH 250
FDFPF+ TKYIPFYGGAEYHDYHH
Sbjct: 572 FDFPFSLTKYIPFYGGAEYHDYHH 643
Score = 53.3 bits (110), Expect(2) = 5e-035
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -3 / -1
Query: 251 NDDSHGILLLHRMEYTLSG*MGNQ 180
+DD+HGILLLHR EYTLSG*MGNQ
Sbjct: 644 SDDNHGILLLHRTEYTLSG*MGNQ 573
Score = 51.9 bits (107), Expect(2) = 5e-023
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +1 / +1
Query: 181 *FPIHPDKVYSILWRSRIP*LSS 249
*FPI PDKVYS+LWRSRIP*LSS
Sbjct: 574 *FPIQPDKVYSVLWRSRIP*LSS 642
Score = 51.5 bits (106), Expect(2) = 1e-028
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = -2 / -3
Query: 249 ***SWYSAPP*NGIYFVGVNGKSK 178
***SWYSAPP*NGIYFV +NGKSK
Sbjct: 642 ***SWYSAPP*NGIYFVRLNGKSK 571
>gb|BF622942.3|BF622942 HVSMEa0012C24f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0012C24f, mRNA sequence
Length = 803
Score = 177 bits (382), Expect = 4e-044
Identities = 67/91 (73%), Positives = 75/91 (82%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+TAPIGFAAPYAHWAEVLILGIPSF GPAI PGHMITFWLWIILRQ+EAI+THSG
Sbjct: 504 IHHEYTAPIGFAAPYAHWAEVLILGIPSFAGPAIAPGHMITFWLWIILRQMEAIDTHSGX 683
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQS 274
FP P K + HDYHHYVGGQ+++
Sbjct: 684 *FPIQPDKVYSVLWESRIHDYHHYVGGQARA 776
Score = 114 bits (243), Expect(3) = 7e-033
Identities = 48/61 (78%), Positives = 51/61 (83%)
Frame = -2 / -2
Query: 189 GKSKPLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
G PLCVS+AS *RSIIQSQ VIMWPG MAGP KEGMPS+STSAQ AYGAA P+GAV S
Sbjct: 691 GNQXPLCVSMASI*RSIIQSQKVIMWPGAMAGPAKEGMPSMSTSAQ*AYGAAKPMGAVYS 512
Query: 9 W 7
W
Sbjct: 511 W 509
Score = 92.7 bits (196), Expect(2) = 6e-024
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = -1 / -1
Query: 175 AMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCESYWRSELMVN 2
A+C++ HLT+YNPEPE +HVAW NG EGGDA+Y+HL PV +W CE+ R L+V+
Sbjct: 677 AVCVNGFHLTKYNPEPEGNHVAWCNGRASEGGDAKYEHLCPVSVWRCEANGRGVLVVD 504
Score = 38.6 bits (78), Expect(3) = 7e-033
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = -1 / -3
Query: 232 FCSSIEWNILCRGEWEIK 179
FCS IE NILC+ EWEIK
Sbjct: 735 FCSPIERNILCQAEWEIK 682
Score = 37.7 bits (76), Expect(2) = 6e-024
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -3 / -2
Query: 233 ILLLHRMEYTLSG*MGNQ 180
ILL HR EYTLSG*MGNQ
Sbjct: 736 ILLSHRTEYTLSG*MGNQ 683
Score = 25.4 bits (49), Expect(3) = 7e-033
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -2 / -2
Query: 264 WPPT****SW 235
WPPT****SW
Sbjct: 766 WPPT****SW 737
>gb|AL507854.1|AL507854 AL507854 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07A18V 5',
mRNA sequence
Length = 700
Score = 140 bits (301), Expect = 6e-033
Identities = 53/63 (84%), Positives = 57/63 (90%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+TAPIGFAAPYAHWAEVLILGIPSF GPAI PGHMITFWLWIILRQ+EAI+TH
Sbjct: 511 IHHEYTAPIGFAAPYAHWAEVLILGIPSFAGPAIAPGHMITFWLWIILRQMEAIDTHKRX 690
Query: 182 DFP 190
FP
Sbjct: 691 *FP 699
Score = 110 bits (234), Expect = 1e-023
Identities = 47/61 (77%), Positives = 50/61 (81%)
Frame = -2 / -3
Query: 189 GKSKPLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
G LCVS+AS *RSIIQSQ VIMWPG MAGP KEGMPS+STSAQ AYGAA P+GAV S
Sbjct: 698 GNQXRLCVSMASI*RSIIQSQKVIMWPGAMAGPAKEGMPSMSTSAQ*AYGAAKPMGAVYS 519
Query: 9 W 7
W
Sbjct: 518 W 516
>gb|CV064104.1|CV064104 BNEL98b1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL98b1 5' similar to putative
sterol 4-alpha-methyl-oxidase, mRNA sequence
Length = 640
Score = 137 bits (293), Expect = 8e-032
Identities = 46/89 (51%), Positives = 65/89 (73%)
Frame = +2 / -2
Query: 68 ILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYH 247
ILG + VGPA+ H+ T WLW++LR +E +E HSG+ FP++P+ ++P YGG+++HDYH
Sbjct: 639 ILGFATVVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGSDFHDYH 460
Query: 248 HYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
H V N+AS F Y D+L+GTDKGYR
Sbjct: 459 HRVLYTKSGNYASTFVYMDWLFGTDKGYR 373
>gb|BF622107.2|BF622107 HVSMEa0001M11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001M11f, mRNA sequence
Length = 595
Score = 120 bits (256), Expect = 1e-026
Identities = 44/62 (70%), Positives = 53/62 (85%)
Frame = +2 / +2
Query: 221 GGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKLKDLGHNDGEKGDG 400
GGAE+HDYH Y+GGQS+SNFA VFTYCDY+YGTDKGYR+HK LAKLK+L N+ +KG
Sbjct: 5 GGAEHHDYHFYIGGQSKSNFAPVFTYCDYIYGTDKGYRYHKATLAKLKELAGNEVQKGVD 184
Query: 401 SG 406
+G
Sbjct: 185 NG 190
>gb|CA009082.1|CA009082 HU13C01r HU Hordeum vulgare subsp. vulgare cDNA clone HU13C01
5-PRIME, mRNA sequence
Length = 611
Score = 120 bits (256), Expect = 1e-026
Identities = 44/48 (91%), Positives = 46/48 (95%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIIL 145
+HHE+TAPIGFAAPYAHWAEVLILGIPSF GPAI PGHMITFWLWIIL
Sbjct: 467 IHHEYTAPIGFAAPYAHWAEVLILGIPSFAGPAIAPGHMITFWLWIIL 610
>gb|BG415905.2|BG415905 HVSMEk0008P01f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0008P01f, mRNA sequence
Length = 657
Score = 85.8 bits (181), Expect(3) = 1e-025
Identities = 32/43 (74%), Positives = 35/43 (81%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFW 130
+ HE TAPIGFAAPYAHWAEVLILGIPSF GPA P H+ + W
Sbjct: 211 IPHESTAPIGFAAPYAHWAEVLILGIPSFSGPAFAPAHINSLW 339
Score = 35.0 bits (70), Expect(3) = 1e-025
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2 / +2
Query: 116 MITFWLWIILRQVEAIETHSGFDFPFTPTKYIPFY 220
+I F L IIL Q++ ++THSGF P T T + +
Sbjct: 326 LIPFGL*IILSQMKPLDTHSGFISPSTLTNFFSVF 430
Score = 33.1 bits (66), Expect(3) = 1e-025
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1 / +2
Query: 262 PEPKQFCFCFHXXXXXIWH*QRLQIPQNIPSKAEG 366
P P F H +WH QRL IPQ + +G
Sbjct: 476 PNPDHFSCGLHPRISPVWHQQRLHIPQGFFTNLKG 580
>gb|BU995027.1|BU995027 HM08P11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08P11
5-PRIME, mRNA sequence
Length = 621
Score = 115 bits (245), Expect = 3e-025
Identities = 38/84 (45%), Positives = 57/84 (67%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 283 VHHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRVLETVEAHSGY 462
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHY 253
FP++P+ ++P YGG+ +H+
Sbjct: 463 HFPWSPSNFLPLYGGSSDFHDYHH 534
>gb|BU995276.1|BU995276 HM09L23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09L23
5-PRIME, mRNA sequence
Length = 591
Score = 115 bits (245), Expect = 3e-025
Identities = 38/84 (45%), Positives = 57/84 (67%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 256 VHHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRVLETVEAHSGY 435
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHY 253
FP++P+ ++P YGG+ +H+
Sbjct: 436 HFPWSPSNFLPLYGGSSDFHDYHH 507
>gb|BJ453141.1|BJ453141 BJ453141 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41n13 5', mRNA sequence
Length = 614
Score = 113 bits (242), Expect = 8e-025
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +2 / +2
Query: 236 HDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKLKDLGHNDGEKGDGSG 406
HDYHHY+GGQS+SNFA VFTYCDY+YGTDKGYR+HK LAKLK+L N+ +KG +G
Sbjct: 2 HDYHHYIGGQSKSNFAPVFTYCDYIYGTDKGYRYHKATLAKLKELAGNEVQKGVDNG 172
>gb|BJ460691.1|BJ460691 BJ460691 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41n13 3', mRNA sequence
Length = 541
Score = 113 bits (242), Expect = 8e-025
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +2 / -2
Query: 236 HDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKLKDLGHNDGEKGDGSG 406
HDYHHY+GGQS+SNFA VFTYCDY+YGTDKGYR+HK LAKLK+L N+ +KG +G
Sbjct: 540 HDYHHYIGGQSKSNFAPVFTYCDYIYGTDKGYRYHKATLAKLKELAGNEVQKGVDNG 370
>gb|CA019419.1|CA019419 HV11O17r HV Hordeum vulgare subsp. vulgare cDNA clone HV11O17
5-PRIME, mRNA sequence
Length = 692
Score = 113 bits (241), Expect = 1e-024
Identities = 37/76 (48%), Positives = 54/76 (71%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 464 VHHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRVLETVEAHSGY 643
Query: 182 DFPFTPTKYIPFYGGA 229
FP++P+ ++P YGG+
Sbjct: 644 HFPWSPSNFLPLYGGS 691
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 331,507,537
Number of Sequences: 312970
Number of extensions: 5632407
Number of successful extensions: 49175
Number of sequences better than 1.0e-020: 28
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7422924075
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)