TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448489.2.1
(677 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ467007.1|BJ467007 BJ467007 K. Sato unpublished cDNA li... 263 9e-070
gb|AV915249.1|AV915249 AV915249 K. Sato unpublished cDNA li... 259 2e-068
gb|AV921857.1|AV921857 AV921857 K. Sato unpublished cDNA li... 259 2e-068
gb|BJ459802.1|BJ459802 BJ459802 K. Sato unpublished cDNA li... 177 8e-044
gb|AJ462461.1|AJ462461 AJ462461 S00002 Hordeum vulgare subs... 170 9e-042
gb|CA017134.1|CA017134 HV14M07u HV Hordeum vulgare subsp. v... 151 3e-036
>gb|BJ467007.1|BJ467007 BJ467007 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35i03 3', mRNA sequence
Length = 653
Score = 263 bits (568), Expect = 9e-070
Identities = 103/130 (79%), Positives = 112/130 (86%)
Frame = -2 / -3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
LSQ + KV+IENSYY HGFWA VDKY MMENH GLGDERWPFVTHFVGCKPCGS
Sbjct: 579 LSQKEKWMDKVYIENSYYLHGFWAGLVDKYEEMMENHHPGLGDERWPFVTHFVGCKPCGS 400
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMK 302
YGDYPV+RCL+SMERAFNFADNQVLRLYGF+HKGLESPKIKR R QTT+PIND ENLD+K
Sbjct: 399 YGDYPVDRCLKSMERAFNFADNQVLRLYGFAHKGLESPKIKRIRSQTTKPINDKENLDVK 220
Query: 301 AKISTIS*KF 272
AK+ T S* +
Sbjct: 219 AKMPTTS*SY 190
Score = 165 bits (354), Expect(3) = 3e-043
Identities = 73/97 (75%), Positives = 75/97 (77%)
Frame = +3 / +2
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C KPY RSTWLSAKLNA S+LLR RSTG*SP*LPHGLHPTK VT GHRSSP P W FSII
Sbjct: 305 CAKPYRRSTWLSAKLNALSILLRHRSTG*SP*LPHGLHPTKCVTNGHRSSPSPGWWFSII 484
Query: 567 XSYLSTXXAQKPCX**EFSMNTLXXXXSFCESXXXIS 677
SYLST AQKPC * EFS+ TL SFCES IS
Sbjct: 485 SSYLSTNPAQKPCK*YEFSIYTLSIHFSFCESKRYIS 595
Score = 162 bits (348), Expect = 2e-039
Identities = 75/138 (54%), Positives = 91/138 (65%)
Frame = +2 / +1
Query: 263 LSSELSGNCRYFGLHI*VLHIINWSSCLIPESLDLGAFQPLV*ETI*PKHLVVGKIKRSL 442
LSS S + R+ GLHI VL +INW L P+ LDLGAFQPLV ETI HLV+GKIK SL
Sbjct: 181 LSSVASRSGRHLGLHIKVLLVINWLCGLTPDPLDLGAFQPLVCETIQA*HLVIGKIKCSL 360
Query: 443 HAPEAALHWVIPIAPTWLAPNKVSHERPPLVAEAXXVILHHLXILIXXXSPEAMXVVGIL 622
H E ++W+I IA WLAP+KV H+ PPL+ + V+LHHL +L+ SPE M VV IL
Sbjct: 361 HTLETPVNWIITIASAWLAPDKVCHKWPPLIPKPWMVVLHHLLVLVHQSSPETMQVV*IL 540
Query: 623 NEHLVXXXVXLREXXXXQ 676
HLV + LRE Q
Sbjct: 541 YIHLVHPLLLLREQEVYQ 594
Score = 137 bits (294), Expect = 6e-032
Identities = 65/110 (59%), Positives = 71/110 (64%)
Frame = +1 / +3
Query: 346 DP*IS*SWGFPAPCVRNHIAEAPGCRQN*TLAPCS*GSAPLGNPHSSHMACTQQSESRKA 525
D * S*SWGFPAPCVRNH APG RQN* L+P S* + L N HS MACT+QS S+ A
Sbjct: 264 DS*SS*SWGFPAPCVRNHTGVAPGYRQN*MLSPYS*DTGQLDNHHSFRMACTRQSVSQMA 443
Query: 526 TARRRGLXGDSPSSXHTYXPTQPRSHASSRNSQ*TPCXXXXXFARAXXXS 675
TA + L G SPSS T P QPR+HASS NS TPC ARA S
Sbjct: 444 TAHPQALDGGSPSSPRTCPPIQPRNHASSMNSLYTPCPSTSPSARARGIS 593
Score = 131 bits (280), Expect = 5e-030
Identities = 69/134 (51%), Positives = 83/134 (61%)
Frame = -1 / -2
Query: 674 DXXXALAKXXXXXQGVH*EFXXXXXXLGXVGX*V*XDDGESXXXXXXRAVAFRDSLCWVQ 495
D ALA+ QGV+ EF LG +G V DDGE AVA D+LC VQ
Sbjct: 592 DIPLALAEGEVDGQGVYREFILLAWFLGWIGGQVRGDDGEPPSRAWG*AVAICDTLCRVQ 413
Query: 494 AMWELWGLPSGALPQEHGASV*FCRQPGASAIWFLTQGAGKPQDQEIQGSDN*TN**CGE 315
AM +LW L S + QE+G S+*FCR PGA+ +WF TQGAGKPQDQE Q SD+ N** GE
Sbjct: 412 AMRKLW*LSS*PVSQEYGESI*FCR*PGATPVWFRTQGAGKPQDQEDQESDHKAN**QGE 233
Query: 314 LRYEGQNIYNFLKV 273
EGQ+ +FLK+
Sbjct: 232 P*CEGQDADHFLKL 191
Score = 95.0 bits (201), Expect(2) = 1e-025
Identities = 41/76 (53%), Positives = 50/76 (65%)
Frame = -3 / -1
Query: 492 HVGAMGITQWSAASGAWSERLILPTTRCFGYMVSHTRGWKAPRSRDSGIRQLDQLMMWRT 313
H AM I Q + S W E LILP TRC+ MVSHTRGWKAPRSR SG+R QLM RT
Sbjct: 410 HAEAMVIIQLTGVSRVWREHLILPITRCYACMVSHTRGWKAPRSRGSGVRPQSQLMTRRT 231
Query: 312 *I*RPKYLQFPESSDE 265
+*RP+ E++++
Sbjct: 230 LM*RPRCRPLLEATED 183
Score = 41.4 bits (84), Expect(2) = 1e-025
Identities = 20/38 (52%), Positives = 21/38 (55%)
Frame = -3 / -1
Query: 663 CSRKXTXXXTRCSLRIPTTXMASGLXXXISMXR*WRIT 550
CSR+ TRC RI TT M SGL S R*WR T
Sbjct: 581 CSRRRRSGWTRCI*RIHTTCMVSGLDWWTSTRR*WRTT 468
Score = 25.4 bits (49), Expect(3) = 3e-043
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 279 QEIVDILAFISKFS 320
QE+V ILAF S+FS
Sbjct: 197 QEVVGILAFTSRFS 238
Score = 23.1 bits (44), Expect(3) = 3e-043
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2 / +3
Query: 104 CNL*LSHNNKDW*TKKKKRESKR 172
CNL*L H + T KK +++ R
Sbjct: 54 CNL*LLHITRKKSTSKKAKKNSR 122
>gb|AV915249.1|AV915249 AV915249 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13i20 5', mRNA sequence
Length = 579
Score = 259 bits (559), Expect = 2e-068
Identities = 100/121 (82%), Positives = 108/121 (89%)
Frame = -2 / +3
Query: 634 KVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERC 455
KV+IENSYY HGFWA VDKY MMENH GLGDERWPFVTHFVGCKPCGSYGDYPV+RC
Sbjct: 54 KVYIENSYYLHGFWAGLVDKYEEMMENHHPGLGDERWPFVTHFVGCKPCGSYGDYPVDRC 233
Query: 454 LRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMKAKISTIS*K 275
L+SMERAFNFADNQVLRLYGF+HKGLESPKIKR R QTT+PIND ENLD+KAK+ T S*
Sbjct: 234 LKSMERAFNFADNQVLRLYGFAHKGLESPKIKRIRSQTTKPINDKENLDVKAKMPTTS*S 413
Query: 274 F 272
+
Sbjct: 414 Y 416
Score = 157 bits (337), Expect(2) = 8e-039
Identities = 71/125 (56%), Positives = 86/125 (68%)
Frame = +2 / -2
Query: 263 LSSELSGNCRYFGLHI*VLHIINWSSCLIPESLDLGAFQPLV*ETI*PKHLVVGKIKRSL 442
LSS S + R+ GLHI VL +INW L P+ LDLGAFQPLV ETI HLV+GKIK SL
Sbjct: 425 LSSVASRSGRHLGLHIKVLLVINWLCGLTPDPLDLGAFQPLVCETIQA*HLVIGKIKCSL 246
Query: 443 HAPEAALHWVIPIAPTWLAPNKVSHERPPLVAEAXXVILHHLXILIXXXSPEAMXVVGIL 622
H E ++W+I IA WLAP+KV H+ PPL+ + V+LHHL +L+ SPE M VV IL
Sbjct: 245 HTLETPVNWIITIASAWLAPDKVCHKWPPLIPKPWMVVLHHLLVLVHQSSPETMQVV*IL 66
Query: 623 NEHLV 637
HLV
Sbjct: 65 YIHLV 51
Score = 151 bits (325), Expect(2) = 7e-038
Identities = 67/88 (76%), Positives = 69/88 (78%)
Frame = +3 / -3
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C KPY RSTWLSAKLNA S+LLR RSTG*SP*LPHGLHPTK VT GHRSSP P W FSII
Sbjct: 301 CAKPYRRSTWLSAKLNALSILLRHRSTG*SP*LPHGLHPTKCVTNGHRSSPSPGWWFSII 122
Query: 567 XSYLSTXXAQKPCX**EFSMNTLXXXXS 650
SYLST AQKPC * EFS+ TL S
Sbjct: 121 SSYLSTNPAQKPCK*YEFSIYTLSIHFS 38
Score = 133 bits (286), Expect = 7e-031
Identities = 61/97 (62%), Positives = 67/97 (69%)
Frame = +1 / -1
Query: 346 DP*IS*SWGFPAPCVRNHIAEAPGCRQN*TLAPCS*GSAPLGNPHSSHMACTQQSESRKA 525
D * S*SWGFPAPCVRNH APG RQN* L+P S* + L N HS MACT+QS S+ A
Sbjct: 342 DS*SS*SWGFPAPCVRNHTGVAPGYRQN*MLSPYS*DTGQLDNHHSFRMACTRQSVSQMA 163
Query: 526 TARRRGLXGDSPSSXHTYXPTQPRSHASSRNSQ*TPC 636
TA + L G SPSS T P QPR+HASS NS TPC
Sbjct: 162 TAHPQALDGGSPSSPRTCPPIQPRNHASSMNSLYTPC 52
Score = 126 bits (270), Expect = 1e-028
Identities = 65/121 (53%), Positives = 78/121 (64%)
Frame = -1 / +2
Query: 635 QGVH*EFXXXXXXLGXVGX*V*XDDGESXXXXXXRAVAFRDSLCWVQAMWELWGLPSGAL 456
QGV+ EF LG +G V DDGE AVA D+LC VQAM +LW L S +
Sbjct: 53 QGVYREFILLAWFLGWIGGQVRGDDGEPPSRAWG*AVAICDTLCRVQAMRKLW*LSS*PV 232
Query: 455 PQEHGASV*FCRQPGASAIWFLTQGAGKPQDQEIQGSDN*TN**CGELRYEGQNIYNFLK 276
QE+G S+*FCR PGA+ +WF TQGAGKPQDQE Q SD+ N** GE EGQ+ +FLK
Sbjct: 233 SQEYGESI*FCR*PGATPVWFRTQGAGKPQDQEDQESDHKAN**QGEP*CEGQDADHFLK 412
Query: 275 V 273
+
Sbjct: 413 L 415
Score = 95.0 bits (201), Expect(2) = 1e-023
Identities = 41/76 (53%), Positives = 50/76 (65%)
Frame = -3 / +1
Query: 492 HVGAMGITQWSAASGAWSERLILPTTRCFGYMVSHTRGWKAPRSRDSGIRQLDQLMMWRT 313
H AM I Q + S W E LILP TRC+ MVSHTRGWKAPRSR SG+R QLM RT
Sbjct: 196 HAEAMVIIQLTGVSRVWREHLILPITRCYACMVSHTRGWKAPRSRGSGVRPQSQLMTRRT 375
Query: 312 *I*RPKYLQFPESSDE 265
+*RP+ E++++
Sbjct: 376 LM*RPRCRPLLEATED 423
Score = 34.5 bits (69), Expect(2) = 1e-023
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -3 / +1
Query: 636 TRCSLRIPTTXMASGLXXXISMXR*WRIT 550
TRC RI TT M SGL S R*WR T
Sbjct: 52 TRCI*RIHTTCMVSGLDWWTSTRR*WRTT 138
Score = 25.4 bits (49), Expect(2) = 7e-038
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 279 QEIVDILAFISKFS 320
QE+V ILAF S+FS
Sbjct: 409 QEVVGILAFTSRFS 368
Score = 23.1 bits (44), Expect(2) = 8e-039
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2 / -1
Query: 104 CNL*LSHNNKDW*TKKKKRESKR 172
CNL*L H + T KK +++ R
Sbjct: 552 CNL*LLHITRKKSTSKKAKKNSR 484
>gb|AV921857.1|AV921857 AV921857 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13i20 3', mRNA sequence
Length = 664
Score = 259 bits (559), Expect = 2e-068
Identities = 100/121 (82%), Positives = 108/121 (89%)
Frame = -2 / -3
Query: 634 KVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERC 455
KV+IENSYY HGFWA VDKY MMENH GLGDERWPFVTHFVGCKPCGSYGDYPV+RC
Sbjct: 662 KVYIENSYYLHGFWAGLVDKYEEMMENHHPGLGDERWPFVTHFVGCKPCGSYGDYPVDRC 483
Query: 454 LRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMKAKISTIS*K 275
L+SMERAFNFADNQVLRLYGF+HKGLESPKIKR R QTT+PIND ENLD+KAK+ T S*
Sbjct: 482 LKSMERAFNFADNQVLRLYGFAHKGLESPKIKRIRSQTTKPINDKENLDVKAKMPTTS*S 303
Query: 274 F 272
+
Sbjct: 302 Y 300
Score = 155 bits (333), Expect = 2e-037
Identities = 70/124 (56%), Positives = 85/124 (68%)
Frame = +2 / +3
Query: 263 LSSELSGNCRYFGLHI*VLHIINWSSCLIPESLDLGAFQPLV*ETI*PKHLVVGKIKRSL 442
LSS S + R+ GLHI VL +INW L P+ LDLGAFQPLV ETI HLV+GKIK SL
Sbjct: 291 LSSVASRSGRHLGLHIKVLLVINWLCGLTPDPLDLGAFQPLVCETIQA*HLVIGKIKCSL 470
Query: 443 HAPEAALHWVIPIAPTWLAPNKVSHERPPLVAEAXXVILHHLXILIXXXSPEAMXVVGIL 622
H E ++W+I IA WLAP+KV H+ PPL+ + V+LHHL +L+ SPE M VV IL
Sbjct: 471 HTLETPVNWIITIASAWLAPDKVCHKWPPLIPKPWMVVLHHLLVLVHQSSPETMQVV*IL 650
Query: 623 NEHL 634
HL
Sbjct: 651 YIHL 662
Score = 151 bits (324), Expect(4) = 1e-041
Identities = 66/83 (79%), Positives = 68/83 (81%)
Frame = +3 / +1
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C KPY RSTWLSAKLNA S+LLR RSTG*SP*LPHGLHPTK VT GHRSSP P W FSII
Sbjct: 415 CAKPYRRSTWLSAKLNALSILLRHRSTG*SP*LPHGLHPTKCVTNGHRSSPSPGWWFSII 594
Query: 567 XSYLSTXXAQKPCX**EFSMNTL 635
SYLST AQKPC * EFS+ TL
Sbjct: 595 SSYLSTNPAQKPCK*YEFSIYTL 663
Score = 133 bits (286), Expect = 7e-031
Identities = 61/97 (62%), Positives = 67/97 (69%)
Frame = +1 / +2
Query: 346 DP*IS*SWGFPAPCVRNHIAEAPGCRQN*TLAPCS*GSAPLGNPHSSHMACTQQSESRKA 525
D * S*SWGFPAPCVRNH APG RQN* L+P S* + L N HS MACT+QS S+ A
Sbjct: 374 DS*SS*SWGFPAPCVRNHTGVAPGYRQN*MLSPYS*DTGQLDNHHSFRMACTRQSVSQMA 553
Query: 526 TARRRGLXGDSPSSXHTYXPTQPRSHASSRNSQ*TPC 636
TA + L G SPSS T P QPR+HASS NS TPC
Sbjct: 554 TAHPQALDGGSPSSPRTCPPIQPRNHASSMNSLYTPC 664
Score = 126 bits (270), Expect = 1e-028
Identities = 65/121 (53%), Positives = 78/121 (64%)
Frame = -1 / -2
Query: 635 QGVH*EFXXXXXXLGXVGX*V*XDDGESXXXXXXRAVAFRDSLCWVQAMWELWGLPSGAL 456
QGV+ EF LG +G V DDGE AVA D+LC VQAM +LW L S +
Sbjct: 663 QGVYREFILLAWFLGWIGGQVRGDDGEPPSRAWG*AVAICDTLCRVQAMRKLW*LSS*PV 484
Query: 455 PQEHGASV*FCRQPGASAIWFLTQGAGKPQDQEIQGSDN*TN**CGELRYEGQNIYNFLK 276
QE+G S+*FCR PGA+ +WF TQGAGKPQDQE Q SD+ N** GE EGQ+ +FLK
Sbjct: 483 SQEYGESI*FCR*PGATPVWFRTQGAGKPQDQEDQESDHKAN**QGEP*CEGQDADHFLK 304
Query: 275 V 273
+
Sbjct: 303 L 301
Score = 95.0 bits (201), Expect(2) = 1e-023
Identities = 41/76 (53%), Positives = 50/76 (65%)
Frame = -3 / -1
Query: 492 HVGAMGITQWSAASGAWSERLILPTTRCFGYMVSHTRGWKAPRSRDSGIRQLDQLMMWRT 313
H AM I Q + S W E LILP TRC+ MVSHTRGWKAPRSR SG+R QLM RT
Sbjct: 520 HAEAMVIIQLTGVSRVWREHLILPITRCYACMVSHTRGWKAPRSRGSGVRPQSQLMTRRT 341
Query: 312 *I*RPKYLQFPESSDE 265
+*RP+ E++++
Sbjct: 340 LM*RPRCRPLLEATED 293
Score = 34.5 bits (69), Expect(2) = 1e-023
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = -3 / -1
Query: 636 TRCSLRIPTTXMASGLXXXISMXR*WRIT 550
TRC RI TT M SGL S R*WR T
Sbjct: 664 TRCI*RIHTTCMVSGLDWWTSTRR*WRTT 578
Score = 28.1 bits (55), Expect(4) = 1e-041
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / +2
Query: 39 KARLFPSDLSFYHV 80
K +FPSDLS YHV
Sbjct: 98 KTEIFPSDLSSYHV 139
Score = 25.4 bits (49), Expect(4) = 1e-041
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 279 QEIVDILAFISKFS 320
QE+V ILAF S+FS
Sbjct: 307 QEVVGILAFTSRFS 348
Score = 23.1 bits (44), Expect(4) = 1e-041
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2 / +2
Query: 104 CNL*LSHNNKDW*TKKKKRESKR 172
CNL*L H + T KK +++ R
Sbjct: 164 CNL*LLHITRKKSTSKKAKKNSR 232
>gb|BJ459802.1|BJ459802 BJ459802 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38f08 3', mRNA sequence
Length = 606
Score = 177 bits (380), Expect = 8e-044
Identities = 69/82 (84%), Positives = 76/82 (92%)
Frame = -2 / -1
Query: 517 VTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTT 338
VTHFVGCKPCGSYGDYPV+RCL+SMERAFNFADNQVLRLYGF+HKGLESPKIKR R QTT
Sbjct: 606 VTHFVGCKPCGSYGDYPVDRCLKSMERAFNFADNQVLRLYGFAHKGLESPKIKRIRSQTT 427
Query: 337 RPINDVENLDMKAKISTIS*KF 272
+PIND ENLD+KAK+ T S* +
Sbjct: 426 KPINDKENLDVKAKMPTTS*SY 361
Score = 113 bits (241), Expect(3) = 1e-028
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = +2 / +1
Query: 263 LSSELSGNCRYFGLHI*VLHIINWSSCLIPESLDLGAFQPLV*ETI*PKHLVVGKIKRSL 442
LSS S + R+ GLHI VL +INW L P+ LDLGAFQPLV ETI HLV+GKIK SL
Sbjct: 352 LSSVASRSGRHLGLHIKVLLVINWLCGLTPDPLDLGAFQPLVCETIQA*HLVIGKIKCSL 531
Query: 443 HAPEAALHWVIPIAPTWLAPNKVSH 517
H E ++W+I IA WLAP+KV H
Sbjct: 532 HTLETPVNWIITIASAWLAPDKVCH 606
Score = 105 bits (225), Expect = 2e-022
Identities = 49/81 (60%), Positives = 60/81 (74%)
Frame = -1 / -3
Query: 515 DSLCWVQAMWELWGLPSGALPQEHGASV*FCRQPGASAIWFLTQGAGKPQDQEIQGSDN* 336
D+LC VQAM +LW L S + QE+G S+*FCR PGA+ +WF TQGAGKPQDQE Q SD+
Sbjct: 604 DTLCRVQAMRKLW*LSS*PVSQEYGESI*FCR*PGATPVWFRTQGAGKPQDQEDQESDHK 425
Query: 335 TN**CGELRYEGQNIYNFLKV 273
N** GE EGQ+ +FLK+
Sbjct: 424 AN**QGEP*CEGQDADHFLKL 362
Score = 28.1 bits (55), Expect(3) = 1e-028
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / +1
Query: 39 KARLFPSDLSFYHV 80
K +FPSDLS YHV
Sbjct: 160 KTEIFPSDLSSYHV 201
Score = 22.6 bits (43), Expect(3) = 1e-028
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2 / +1
Query: 104 CNL*LSHNNKDW*TKKKKRESKRVETRT 187
CNL*L H + T KK ++ T T
Sbjct: 226 CNL*LLHITRKKSTSKKAKKIVETRTAT 309
>gb|AJ462461.1|AJ462461 AJ462461 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200052A08F1, mRNA sequence
Length = 360
Score = 170 bits (365), Expect = 9e-042
Identities = 63/89 (70%), Positives = 72/89 (80%)
Frame = -2 / +2
Query: 583 VDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLR 404
VDKY MME H GLGDERWPF+THFVGCKPCGSYGDYPVE+CL MERAFNFADNQVLR
Sbjct: 5 VDKYEEMMEKHHPGLGDERWPFITHFVGCKPCGSYGDYPVEQCLTGMERAFNFADNQVLR 184
Query: 403 LYGFSHKGLESPKIKRFRDQTTRPINDVE 317
LYGF H+ L +PK+K ++T P+ + E
Sbjct: 185 LYGFRHRSLTNPKVKPVANRTASPLQNKE 271
Score = 116 bits (247), Expect = 2e-025
Identities = 51/66 (77%), Positives = 52/66 (78%)
Frame = +3 / -1
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C PYS STWLSAKL ARSM +R STG*SP*LP GLHPTK V KGHRSSP P W FSII
Sbjct: 201 CLNPYSLSTWLSAKLKARSMPVRHCSTG*SP*LPQGLHPTKCVMKGHRSSPSPGWCFSII 22
Query: 567 XSYLST 584
SYLST
Sbjct: 21 SSYLST 4
>gb|CA017134.1|CA017134 HV14M07u HV Hordeum vulgare subsp. vulgare cDNA clone HV14M07
3-PRIME, mRNA sequence
Length = 503
Score = 151 bits (325), Expect = 3e-036
Identities = 55/76 (72%), Positives = 64/76 (84%)
Frame = -2 / -1
Query: 544 GLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPK 365
GLGDERWPF+THFVGCKPCGSYGDYPVE+CL MERAFNFADNQVLRLYGF H+ L +PK
Sbjct: 503 GLGDERWPFITHFVGCKPCGSYGDYPVEQCLTGMERAFNFADNQVLRLYGFRHRSLTNPK 324
Query: 364 IKRFRDQTTRPINDVE 317
+K ++T P+ + E
Sbjct: 323 VKPVANRTASPLQNKE 276
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 268,368,909
Number of Sequences: 312970
Number of extensions: 3727196
Number of successful extensions: 34938
Number of sequences better than 1.0e-020: 8
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7380507366
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)