TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440773.2.1
(1437 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE216717.2|BE216717 HV_CEb0011F08f Hordeum vulgare seedl... 314 e-101
gb|BJ464822.1|BJ464822 BJ464822 K. Sato unpublished cDNA li... 350 1e-095
gb|CV059125.1|CV059125 BNEL44f5 Barley EST endosperm librar... 308 4e-086
gb|BI959212.1|BI959212 HVSMEn0018K16f Hordeum vulgare rachi... 295 1e-085
gb|BG369930.2|BG369930 HVSMEi0026J11f Hordeum vulgare 20 DA... 269 2e-078
gb|BU987196.1|BU987196 HF14B07r HF Hordeum vulgare subsp. v... 137 2e-077
gb|BF625611.2|BF625611 HVSMEa0011O14f Hordeum vulgare seedl... 236 2e-073
gb|BF629044.2|BF629044 HVSMEb0009K16f Hordeum vulgare seedl... 263 3e-070
gb|BQ467017.1|BQ467017 HS02E20r HS Hordeum vulgare subsp. v... 258 2e-069
gb|BQ466698.1|BQ466698 HS01E20T HS Hordeum vulgare subsp. v... 254 3e-068
gb|AL505025.1|AL505025 AL505025 Hordeum vulgare Barke roots... 252 3e-066
gb|BG343770.2|BG343770 HVSMEg0006L08f Hordeum vulgare pre-a... 231 9e-066
gb|CB882449.1|CB882449 HL01O07w HL Hordeum vulgare subsp. v... 198 2e-062
gb|BJ467124.1|BJ467124 BJ467124 K. Sato unpublished cDNA li... 237 1e-061
gb|CA008597.1|CA008597 HU11H12r HU Hordeum vulgare subsp. v... 226 2e-058
gb|BQ465500.1|BQ465500 HU03N03r HU Hordeum vulgare subsp. v... 222 5e-058
gb|CA002379.1|CA002379 HS07F02r HS Hordeum vulgare subsp. v... 218 1e-057
gb|AV936335.1|AV936335 AV936335 K. Sato unpublished cDNA li... 179 9e-057
gb|CD662384.1|CD662384 UCRHV18_02aa05_b1 Drought-stressed D... 172 1e-054
gb|CD663353.1|CD663353 UCRHV18_05ah10_b1 Drought-stressed D... 171 1e-054
gb|AW983496.2|AW983496 HVSMEg0010N10f Hordeum vulgare pre-a... 115 2e-054
gb|BU971843.1|BU971843 HB19N11r BC Hordeum vulgare subsp. v... 137 1e-052
gb|BF616887.1|BF616887 HVSMEc0013G20f Hordeum vulgare seedl... 145 5e-052
gb|AV923368.1|AV923368 AV923368 K. Sato unpublished cDNA li... 197 1e-050
gb|AV927080.1|AV927080 AV927080 K. Sato unpublished cDNA li... 197 1e-050
gb|CA007573.1|CA007573 HU08G03r HU Hordeum vulgare subsp. v... 195 4e-050
gb|BG342914.2|BG342914 HVSMEg0001E07f Hordeum vulgare pre-a... 122 5e-048
gb|CA008104.1|CA008104 HU09O15r HU Hordeum vulgare subsp. v... 188 7e-048
gb|CA008721.1|CA008721 HU11O06r HU Hordeum vulgare subsp. v... 182 3e-046
gb|CB880964.1|CB880964 HM08F20w HM Hordeum vulgare subsp. v... 138 1e-044
gb|BF619842.2|BF619842 HVSMEc0009G18f Hordeum vulgare seedl... 156 3e-038
gb|AV928554.1|AV928554 AV928554 K. Sato unpublished cDNA li... 112 1e-036
gb|CA008339.1|CA008339 HU10K10r HU Hordeum vulgare subsp. v... 150 1e-036
gb|AV920842.1|AV920842 AV920842 K. Sato unpublished cDNA li... 58 6e-036
gb|AV935894.1|AV935894 AV935894 K. Sato unpublished cDNA li... 60 1e-035
gb|BJ475980.1|BJ475980 BJ475980 K. Sato unpublished cDNA li... 60 7e-034
gb|AW983272.3|AW983272 HVSMEg0010A16f Hordeum vulgare pre-a... 133 3e-030
gb|BQ135330.1|BQ135330 LP10034 Lemma/palea-enriched cDNA li... 88 4e-029
gb|CA006612.1|CA006612 HU05D02r HU Hordeum vulgare subsp. v... 124 9e-029
gb|BG342949.2|BG342949 HVSMEg0001H04f Hordeum vulgare pre-a... 102 1e-027
gb|AV923846.1|AV923846 AV923846 K. Sato unpublished cDNA li... 107 7e-024
>gb|BE216717.2|BE216717 HV_CEb0011F08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011F08f, mRNA sequence
Length = 945
Score = 314 bits (681), Expect(2) = e-101
Identities = 111/138 (80%), Positives = 124/138 (89%)
Frame = +2 / +1
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A DG+V RRDVGKM+HGCEHYRRRCKIVAPCC +VFPCRHCHN+ATA GDRH ICRQD
Sbjct: 100 EATGDGDVCRRDVGKMEHGCEHYRRRCKIVAPCCKEVFPCRHCHNDATALGDRHNICRQD 279
Query: 299 VEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDCGICRVGGKE 478
VEKVVC+LC+T+QPVSQVC+ CGVNMGEYFCD+CKFYDDDT+KGQYHC DCGICRVGGKE
Sbjct: 280 VEKVVCVLCDTEQPVSQVCVRCGVNMGEYFCDVCKFYDDDTEKGQYHCHDCGICRVGGKE 459
Query: 479 NFFHCVKCGSCYSVILRD 532
+ HC CGSCY+ LRD
Sbjct: 460 KYLHCAXCGSCYAGALRD 513
Score = 219 bits (473), Expect(2) = 7e-071
Identities = 90/124 (72%), Positives = 94/124 (75%)
Frame = -1 / -2
Query: 534 LSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQLM 355
+SR+ * DPH Q K FSLPPTLHMPQS QWYCP SVSSS*NLH SQKYSPILTP L
Sbjct: 515 VSRNAPA*HDPHXAQCKYFSLPPTLHMPQSWQWYCPFSVSSS*NLHTSQKYSPILTPHLT 336
Query: 354 HTCDTGCFVXXXXXXXXXXXXRHIVCLSPEAVASLWQWRQGNTWLQHGATILHLRR*CSH 175
HTCDTGC V RHI+C SP+AVASLWQWRQGNT LQ GATILHLRR*CSH
Sbjct: 335 HTCDTGCSVSQSTHTTFSTSWRHILCRSPKAVASLWQWRQGNTSLQQGATILHLRR*CSH 156
Query: 174 PCFI 163
PC I
Sbjct: 155 PCSI 144
Score = 208 bits (448), Expect(2) = 4e-065
Identities = 85/125 (68%), Positives = 90/125 (72%)
Frame = -2 / -3
Query: 533 YHGV*QNSRTHTSHSGRSFPCHQPCICHNRCNGTALCLYHHHKICIYHKSTLPY*LHSLC 354
YH Q + THT HS FPC QPCIC N NGTAL L HHHK CI+H+S LPY*LH L
Sbjct: 514 YHATHQRNMTHTXHSASIFPCRQPCICRNHGNGTALSLCHHHKTCIHHRSILPY*LHILR 335
Query: 353 TLVTPAVLFHRVGKLLFQHPDDILYAYLRKP*PRCGSGGRGTPGCSTVPRSCTSAGNART 174
TLVTP V +HRV LLFQHP DI YA KP RCG+GGRGTP CS V RSC SAGNART
Sbjct: 334 TLVTPVVQYHRVHTLLFQHPGDIYYADHPKPWRRCGNGGRGTPPCSRVLRSCISAGNART 155
Query: 173 RASSC 159
RA SC
Sbjct: 154 RAPSC 140
Score = 189 bits (407), Expect(2) = 1e-058
Identities = 84/136 (61%), Positives = 98/136 (72%)
Frame = -3 / -1
Query: 532 ITEYNRIAGPTLHTVEEVFLATNPAYATIDAMVLPFVCIIIIKFAYITKVLSHIDSTAYA 353
IT+ + PTL TV+ FLA NPAYA I AMVLPF+C+IIIK AYIT+V SHIDST+YA
Sbjct: 513 ITQRTSVT*PTLCTVQVFFLAANPAYAAIMAMVLPFLCVIIIKLAYITEVFSHIDSTSYA 334
Query: 352 HL*HRLFCFTE*ANYFFNILTTYCMPISGSRSLVVAVAAGEHLVAARCHDXXXXXXXXXX 173
HL*HRLF TE +YFFNIL TY MPI+ SR +VVA+AAGEHL+AA C+D
Sbjct: 333 HL*HRLFSITEYTHYFFNILATYIMPITQSRGVVVAMAAGEHLLAAGCYDLASPPVMLAP 154
Query: 172 XXXXAHVTAVHLSVAG 125
AHV A H+SVAG
Sbjct: 153 VLHLAHVAAAHVSVAG 106
Score = 166 bits (358), Expect(2) = 9e-051
Identities = 81/136 (59%), Positives = 87/136 (63%)
Frame = +3 / +2
Query: 126 PATERWTAVTWXXXXXXXXXXXXXXXXWHRAATRCSPAATATTRLRLPEIGIQYVVRMLK 305
PATE A TW H AA RCSPAA ATT RL IGI YV RMLK
Sbjct: 107 PATETCAAATWARWSTGASITGGDARS*HPAARRCSPAAIATTTPRLWVIGIIYVARMLK 286
Query: 306 K*FAYSVKQNSRCHKCA*AVESIWESTFVIYANFMMMIQTKGSTIASIVAYAGLVARKTS 485
K* YSV N+RCHKCA* VESIWE+T V+YA+FMMM Q KGSTIA I AYAGL ARK +
Sbjct: 287 K*CVYSVILNNRCHKCA*DVESIWENTSVMYASFMMMTQRKGSTIAMIAAYAGLAARKNT 466
Query: 486 STV*SVGPAILLYSVI 533
TV SVG L+ VI
Sbjct: 467 CTVXSVGHVTLVRCVI 514
Score = 124 bits (265), Expect(3) = 8e-037
Identities = 59/87 (67%), Positives = 68/87 (78%)
Frame = +1 / +3
Query: 253 RGYGFRR*AYNMSSGC*KSSLPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRA 432
R +GF A MS GC*KSS+ TL* T GVTSV K+WSQYGR+LL* MQ+L***+R+RA
Sbjct: 234 RRHGFG*SA*YMSPGC*KSSVCTL*Y*TTGVTSVRKMWSQYGRILL*CMQVL***HRERA 413
Query: 433 VPLHRLWHMQGWWQGKLLPLCEVWVLL 513
VPL L HMQGW QGK+L LC VWV+L
Sbjct: 414 VPLP*LRHMQGWRQGKILALCXVWVML 494
Score = 75.3 bits (158), Expect(2) = e-101
Identities = 31/45 (68%), Positives = 35/45 (77%)
Frame = +2 / +3
Query: 536 HQCVENSMRQNCPICYEYLFDSLQGTRVLNCGHTMHLTCFEEMVA 670
HQC E+SM+QN PI YEYL DSL+GTR LNCG TMH+ EMVA
Sbjct: 516 HQCGEDSMKQNWPIWYEYL*DSLRGTRFLNCGPTMHMGWMGEMVA 650
Score = 69.3 bits (145), Expect(2) = 7e-071
Identities = 31/45 (68%), Positives = 31/45 (68%)
Frame = -1 / -3
Query: 669 ATISSKHVKCIVCPQFRTLVPCNESNRYS*QIGQFCLIEFSTH*W 535
ATIS CIV PQ R LVP NES RYS QIGQFC IE S H*W
Sbjct: 649 ATISPIQPMCIVGPQLRNLVPLNESYRYSYQIGQFCFIESSPH*W 515
Score = 61.6 bits (128), Expect(2) = 4e-065
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = -2 / -1
Query: 668 PPFLQNMSSALCVHSSELLFLVMSQIDTHNRLGNSASLSSPHTDG 534
PP + AL HS E+LFL+M+ IDTH RL NS SL+ PHTDG
Sbjct: 648 PPSHPSSPCALWAHS*EILFLLMNLIDTHTRLANSVSLNPPHTDG 514
Score = 58.3 bits (121), Expect(2) = 1e-058
Identities = 27/45 (60%), Positives = 30/45 (66%)
Frame = -3 / -2
Query: 667 HHFFKTCQVHCVSTVQNSCSL**VK*ILITDWAILPH*VLHTLMV 533
HH VHC TV+ SCS **+ *ILI DW IL H*+L TLMV
Sbjct: 647 HHLTHPAHVHCGPTVKKSCSS**IL*ILIPDWPILFH*ILPTLMV 513
Score = 54.7 bits (113), Expect(2) = 9e-051
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = +3 / +1
Query: 534 TISVWRTQ*GRIAQSVMSIYLTHYKEQEF*TVDTQCT*HVLKKWW 668
TISV R Q* RI QS MSIY H +EQ+F TV QCT +WW
Sbjct: 514 TISVGRIQ*NRIGQSGMSIYKIH*EEQDFLTVGPQCTWAGWVRWW 648
Score = 36.3 bits (73), Expect(3) = 8e-037
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1 / +3
Query: 160 QDEARVRALPAEVQDRGT 213
QD ARVRALPAE+QDR T
Sbjct: 141 QDGARVRALPAEMQDRST 194
Score = 32.2 bits (64), Expect(3) = 8e-037
Identities = 17/36 (47%), Positives = 17/36 (47%)
Frame = +1 / +2
Query: 535 PSVCGXXXXXXXXXXXXVSI*LITRNKSSELWTHNA 642
PSV G VSI I RNK S LW HNA
Sbjct: 515 PSVWGGFNETELANLV*VSIRFIKRNKIS*LWAHNA 622
>gb|BJ464822.1|BJ464822 BJ464822 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36c23 5', mRNA sequence
Length = 584
Score = 350 bits (758), Expect = 1e-095
Identities = 124/148 (83%), Positives = 138/148 (93%)
Frame = +2 / +1
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A DG+V RRDVGKM+HGCEHYRRRCKIVAPCC +VFPCRHCHN+ATA GDRH ICRQD
Sbjct: 139 EATGDGDVCRRDVGKMEHGCEHYRRRCKIVAPCCKEVFPCRHCHNDATALGDRHNICRQD 318
Query: 299 VEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDCGICRVGGKE 478
VEKVVC+LC+T+QPVSQVC+ CGVNMGEYFCD+CKFYDDDT+KGQYHC DCGICRVGGKE
Sbjct: 319 VEKVVCVLCDTEQPVSQVCVRCGVNMGEYFCDVCKFYDDDTEKGQYHCHDCGICRVGGKE 498
Query: 479 NFFHCVKCGSCYSVILRDNHQCVENSMR 562
N+FHC KCGSCY+V LRDNHQCVE+SMR
Sbjct: 499 NYFHCAKCGSCYAVALRDNHQCVEDSMR 582
Score = 254 bits (549), Expect = 9e-067
Identities = 103/134 (76%), Positives = 106/134 (79%)
Frame = -1 / -1
Query: 564 CLIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQK 385
CLIE STH*WLSR+ T * DPHF QWK FSLPPTLHMPQS QWYCP SVSSS*NLH SQK
Sbjct: 584 CLIESSTH*WLSRNATA*HDPHFAQWK*FSLPPTLHMPQSWQWYCPFSVSSS*NLHTSQK 405
Query: 384 YSPILTPQLMHTCDTGCFVXXXXXXXXXXXXRHIVCLSPEAVASLWQWRQGNTWLQHGAT 205
YSPILTP L HTCDTGC V RHI+C SP+AVASLWQWRQGNT LQ GAT
Sbjct: 404 YSPILTPHLTHTCDTGCSVSQSTHTTFSTSWRHILCRSPKAVASLWQWRQGNTSLQQGAT 225
Query: 204 ILHLRR*CSHPCFI 163
ILHLRR*CSHPC I
Sbjct: 224 ILHLRR*CSHPCSI 183
Score = 229 bits (495), Expect = 3e-059
Identities = 93/134 (69%), Positives = 100/134 (74%)
Frame = -2 / -2
Query: 560 SLSSPHTDGYHGV*QNSRTHTSHSGRSFPCHQPCICHNRCNGTALCLYHHHKICIYHKST 381
SL+ PHTDGYH Q + THT HSG +FPC QPCIC N NGTAL L HHHK CI+H+S
Sbjct: 580 SLNPPHTDGYHATQQRNMTHTLHSGSNFPCRQPCICRNHGNGTALSLCHHHKTCIHHRSI 401
Query: 380 LPY*LHSLCTLVTPAVLFHRVGKLLFQHPDDILYAYLRKP*PRCGSGGRGTPGCSTVPRS 201
LPY*LH L TLVTP V +HRV LLFQHP DI YA KP RCG+GGRGTP CS V RS
Sbjct: 400 LPY*LHILRTLVTPVVQYHRVHTLLFQHPGDIYYADHPKPWRRCGNGGRGTPPCSRVLRS 221
Query: 200 CTSAGNARTRASSC 159
C SAGNARTRA SC
Sbjct: 220 CISAGNARTRAPSC 179
Score = 214 bits (462), Expect = 9e-055
Identities = 94/145 (64%), Positives = 109/145 (75%)
Frame = -3 / -3
Query: 559 H*VLHTLMVITEYNRIAGPTLHTVEEVFLATNPAYATIDAMVLPFVCIIIIKFAYITKVL 380
H*+LHTLMVIT+ N + PTL TVE +FLA NPAYA I AMVLPF+C+IIIK AYIT+V
Sbjct: 579 H*ILHTLMVITQRNSVT*PTLCTVEVIFLAANPAYAAIMAMVLPFLCVIIIKLAYITEVF 400
Query: 379 SHIDSTAYAHL*HRLFCFTE*ANYFFNILTTYCMPISGSRSLVVAVAAGEHLVAARCHDX 200
SHIDST+YAHL*HRLF TE +YFFNIL TY MPI+ SR +VVA+AAGEHL+AA C+D
Sbjct: 399 SHIDSTSYAHL*HRLFSITEYTHYFFNILATYIMPITQSRGVVVAMAAGEHLLAAGCYDL 220
Query: 199 XXXXXXXXXXXXXAHVTAVHLSVAG 125
AHV A H+SVAG
Sbjct: 219 ASPPVMLAPVLHLAHVAAAHVSVAG 145
Score = 187 bits (403), Expect = 1e-046
Identities = 91/145 (62%), Positives = 96/145 (66%)
Frame = +3 / +2
Query: 126 PATERWTAVTWXXXXXXXXXXXXXXXXWHRAATRCSPAATATTRLRLPEIGIQYVVRMLK 305
PATE A TW H AA RCSPAA ATT RL IGI YV RMLK
Sbjct: 146 PATETCAAATWARWSTGASITGGDARS*HPAARRCSPAAIATTTPRLWVIGIIYVARMLK 325
Query: 306 K*FAYSVKQNSRCHKCA*AVESIWESTFVIYANFMMMIQTKGSTIASIVAYAGLVARKTS 485
K* YSV N+RCHKCA* VESIWE+T V+YA+FMMM Q KGSTIA I AYAGL ARK +
Sbjct: 326 K*CVYSVILNNRCHKCA*DVESIWENTSVMYASFMMMTQRKGSTIAMIAAYAGLAARKIT 505
Query: 486 STV*SVGPAILLYSVITISVWRTQ* 560
STV SVG LL VITISVWR Q*
Sbjct: 506 STVQSVGHVTLLRCVITISVWRIQ* 580
Score = 145 bits (312), Expect(2) = 5e-039
Identities = 69/99 (69%), Positives = 78/99 (78%)
Frame = +1 / +3
Query: 253 RGYGFRR*AYNMSSGC*KSSLPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRA 432
R +GF A MS GC*KSS+ TL* T GVTSV K+WSQYGR+LL* MQ+L***+R+RA
Sbjct: 273 RRHGFG*SA*YMSPGC*KSSVCTL*Y*TTGVTSVRKMWSQYGRILL*CMQVL***HRERA 452
Query: 433 VPLHRLWHMQGWWQGKLLPLCEVWVLLFCYTP**PSVCG 549
VPL L HMQGW QGKLLPLC+VWV+L C **PSVCG
Sbjct: 453 VPLP*LRHMQGWRQGKLLPLCKVWVMLRCCVA**PSVCG 569
Score = 36.3 bits (73), Expect(2) = 5e-039
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1 / +3
Query: 160 QDEARVRALPAEVQDRGT 213
QD ARVRALPAE+QDR T
Sbjct: 180 QDGARVRALPAEMQDRST 233
>gb|CV059125.1|CV059125 BNEL44f5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL44f5 5' similar to zinc finger,
mRNA sequence
Length = 562
Score = 308 bits (666), Expect(2) = 4e-086
Identities = 115/132 (87%), Positives = 123/132 (93%)
Frame = +2 / +3
Query: 506 SCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCGHTMHLTCFEEMVAHNKYT 685
SCY+ LRDNHQCVE+SMRQNCPICYEYLFDSL+GTRVLNCGHTMH+ CF EMV HNKYT
Sbjct: 162 SCYACALRDNHQCVEDSMRQNCPICYEYLFDSLKGTRVLNCGHTMHMDCFAEMVDHNKYT 341
Query: 686 CPICSKTALDLTHHWEMLDQEIEATIMPLVYRYKIWVLCNDCNKVSEVNFHVIGHKCSHC 865
CPICSKTALD+T HW MLDQEIEATIMP VYRYK+WVLCNDCNKVSEV+FHVIGHKCSHC
Sbjct: 342 CPICSKTALDMTVHWGMLDQEIEATIMPPVYRYKVWVLCNDCNKVSEVDFHVIGHKCSHC 521
Query: 866 RSYNTRTTSRPA 901
SYNTR+TSRPA
Sbjct: 522 NSYNTRSTSRPA 557
Score = 206 bits (444), Expect(2) = 5e-053
Identities = 96/133 (72%), Positives = 102/133 (76%)
Frame = -1 / -1
Query: 903 SAGRDVVRVLYDLQWLHLWPIT*KFXXXXXXXXXXXXQIL*RYTRGMIVASIS*SNISQ* 724
SAGRDV RVLY+LQWLHLWPIT K Q L*RYT G+IVASIS*SN+ Q*
Sbjct: 559 SAGRDVDRVLYELQWLHLWPITWKSTSETLLQSLQRTQTL*RYTGGIIVASIS*SNMPQ* 380
Query: 723 CVKSRAVLEHIGQVYLLCATISSKHVKCIVCPQFRTLVPCNESNRYS*QIGQFCLIEFST 544
V SRAVLEHIGQVYLL +TIS+K CIVCPQ RTLVP NESNRYS*QIGQFCLIE ST
Sbjct: 379 TVISRAVLEHIGQVYLLWSTISAKQSMCIVCPQLRTLVPFNESNRYS*QIGQFCLIESST 200
Query: 543 H*WLSRSITE*QD 505
H*WLSR+ * D
Sbjct: 199 H*WLSRNAQA*HD 161
Score = 201 bits (433), Expect(2) = 4e-051
Identities = 87/136 (63%), Positives = 105/136 (77%)
Frame = -3 / -3
Query: 904 ICRARCCSGVVRSAVAALVANHVKVHL*DLVAIVAKHPNLVAIHKRHDRGFDLLIQHFPM 725
ICR R S VV A+AAL+ANHV+VH *D VA++AK+PNLV I++RH+ F+LLIQH P+
Sbjct: 560 ICRPRRRSSVV*VAMAALMANHVEVHF*DFVAVIAKNPNLVTIYRRHNCCFNLLIQHAPV 381
Query: 724 MCQIKSCFRAYWTSVFVMRHHFFKTCQVHCVSTVQNSCSL**VK*ILITDWAILPH*VLH 545
C IKSC YWTSVF+M HH +T VH VSTV+NSCS **+K*ILITDWAIL H*+LH
Sbjct: 380 NCHIKSCLGTYWTSVFIMVHHLSETVHVHRVSTVKNSCSF**IK*ILITDWAILSH*ILH 201
Query: 544 TLMVITEYNRIAGPTL 497
TLMVIT+ + P L
Sbjct: 200 TLMVITQRTSVT*PHL 153
Score = 166 bits (358), Expect = 2e-040
Identities = 71/114 (62%), Positives = 84/114 (73%)
Frame = -2 / -2
Query: 845 QSRESSPLRPCCNRCKAPKSCSDTQEA*SWLRSLDPTFPNDVSNQELF*SILDKCICYAP 666
QSR S LR CC+ CK PK C+D QEA* L+SLDPT P+++S QEL +ILDKCI Y P
Sbjct: 501 QSRGSPLLRLCCSHCKEPKPCNDIQEA*LLLQSLDPTCPSELSYQELSWNILDKCIYYGP 322
Query: 665 PFLQNMSSALCVHSSELLFLVMSQIDTHNRLGNSASLSSPHTDGYHGV*QNSRT 504
P +N A CVHS ELLFL+M+QIDTHNRLGNS SL+ PHTDGYH + + T
Sbjct: 321 PSQRNSPCASCVHS*ELLFLLMNQIDTHNRLGNSVSLNPPHTDGYHATHKRNMT 160
Score = 160 bits (344), Expect = 2e-038
Identities = 75/134 (55%), Positives = 84/134 (62%)
Frame = +3 / +1
Query: 504 GPAILLYSVITISVWRTQ*GRIAQSVMSIYLTHYKEQEF*TVDTQCT*HVLKKWWRITNT 683
G L+ VITISVWR Q* RIAQSVMSIYL H KEQEF TVDT+CT V +WW I NT
Sbjct: 160 GHVTLVRCVITISVWRIQ*DRIAQSVMSIYLIH*KEQEFLTVDTRCTWTVSLRWWTIINT 339
Query: 684 LVQYALKQLLI*HIIGKCWIKRSKPRSCLLCIATRFGCFATIATRSQRXXXXXXXXXXXX 863
LVQY +QLLI* G CWIKR K + CLL I TRFG FA AT+SQ+
Sbjct: 340 LVQYVPRQLLI*QFTGACWIKRLKQQLCLLYIVTRFGFFAMTATKSQKWTST*LAISAAI 519
Query: 864 XXXXXPEQHRALQI 905
++ R LQI
Sbjct: 520 ATHTTLDRRRGLQI 561
Score = 98.7 bits (209), Expect(3) = 5e-026
Identities = 51/92 (55%), Positives = 63/92 (68%)
Frame = +1 / +2
Query: 505 VLLFCYTP**PSVCGXXXXXXXXXXXXVSI*LITRNKSSELWTHNALDMF*RNGGA*QIH 684
V+L **PSVCG VSI* I RNKSS LWTH+A +F +GG * IH
Sbjct: 161 VMLRLCVA**PSVCGGFNETELPNLL*VSI*FIKRNKSS*LWTHDAHGLFR*DGGP**IH 340
Query: 685 LSNML*NSS*FDTSLGNVGSRDRSHDHASCVS 780
LSNM +SS*+D+SLG+VGSRD S+++ASC+S
Sbjct: 341 LSNMFQDSS*YDSSLGHVGSRD*SNNYASCIS 436
Score = 39.6 bits (80), Expect(3) = 5e-026
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1 / +2
Query: 841 DWPQVQPLQIVQHPNNIAPCR 903
DWP VQPLQ++QH ++A CR
Sbjct: 497 DWP*VQPLQLIQHSIDVAACR 559
Score = 34.5 bits (69), Expect(2) = 4e-086
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +2 / +1
Query: 305 KVVCLLCETKQPVSQ 349
KVVC+LC+T+QPVSQ
Sbjct: 1 KVVCVLCDTEQPVSQ 45
Score = 25.8 bits (50), Expect(2) = 5e-053
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2 / -1
Query: 365 HSLCTLVTPAVLFHRVGKLL 306
+SL VTP V +HRV LL
Sbjct: 61 YSLYATVTPVVQYHRVHTLL 2
Score = 24.4 bits (47), Expect(2) = 4e-051
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3 / -2
Query: 349 L*HRLFCFTE*ANYF 305
L*HRLF TE +YF
Sbjct: 45 L*HRLFSITEYTHYF 1
Score = 22.6 bits (43), Expect(3) = 5e-026
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 306 K*FAYSVKQNSRCH 347
K* YSV N+RCH
Sbjct: 2 K*CVYSVILNNRCH 43
>gb|BI959212.1|BI959212 HVSMEn0018K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018K16f, mRNA sequence
Length = 679
Score = 295 bits (638), Expect(2) = 1e-085
Identities = 104/127 (81%), Positives = 116/127 (91%)
Frame = +2 / +2
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A DG+V RRDVGKM+HGCEHYRRRCKIVAPCC +VFPCRHCHN+ATA GDRH ICRQD
Sbjct: 239 EATGDGDVCRRDVGKMEHGCEHYRRRCKIVAPCCKEVFPCRHCHNDATALGDRHNICRQD 418
Query: 299 VEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDCGICRVGGKE 478
VEKVVC+LC+T+QPVSQVC+ CGVNMGEYFCD+CKFYDDDT+KGQYHC DCGICRVG KE
Sbjct: 419 VEKVVCVLCDTEQPVSQVCVRCGVNMGEYFCDVCKFYDDDTEKGQYHCHDCGICRVGXKE 598
Query: 479 NFFHCVK 499
N+ HC K
Sbjct: 599 NYXHCAK 619
Score = 210 bits (454), Expect(2) = 2e-057
Identities = 85/113 (75%), Positives = 87/113 (76%)
Frame = -1 / -2
Query: 501 HFTQWKKFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQLMHTCDTGCFVXX 322
HF QW FSL PTLHMPQS QWYCP SVSSS*NLH SQKYSPILTP L HTCDTGC V
Sbjct: 621 HFAQWX*FSLXPTLHMPQSWQWYCPFSVSSS*NLHTSQKYSPILTPHLTHTCDTGCSVSQ 442
Query: 321 XXXXXXXXXXRHIVCLSPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPCFI 163
RHI+C SP+AVASLWQWRQGNT LQ GATILHLRR*CSHPC I
Sbjct: 441 STHTTFSTSWRHILCRSPKAVASLWQWRQGNTSLQQGATILHLRR*CSHPCSI 283
Score = 197 bits (425), Expect(2) = 3e-052
Identities = 81/114 (71%), Positives = 86/114 (75%)
Frame = -2 / -3
Query: 500 TSHSGRSFPCHQPCICHNRCNGTALCLYHHHKICIYHKSTLPY*LHSLCTLVTPAVLFHR 321
T HSG +FPC QPCIC N NGTAL L HHHK CI+H+S LPY*LH L TLVTP V +HR
Sbjct: 620 TLHSGSNFPCXQPCICRNHGNGTALSLCHHHKTCIHHRSILPY*LHILRTLVTPVVQYHR 441
Query: 320 VGKLLFQHPDDILYAYLRKP*PRCGSGGRGTPGCSTVPRSCTSAGNARTRASSC 159
V LLFQHP DI YA KP RCG+GGRGTP CS V RSC SAGNARTRA SC
Sbjct: 440 VHTLLFQHPGDIYYADHPKPWRRCGNGGRGTPPCSRVLRSCISAGNARTRAPSC 279
Score = 184 bits (396), Expect(2) = 7e-048
Identities = 81/127 (63%), Positives = 93/127 (73%)
Frame = -3 / -1
Query: 505 PTLHTVEEVFLATNPAYATIDAMVLPFVCIIIIKFAYITKVLSHIDSTAYAHL*HRLFCF 326
P L TV +FLA NPAYA I AMVLPF+C+IIIK AYIT+V SHIDST+YAHL*HRLF
Sbjct: 625 PXLCTVXVIFLAANPAYAAIMAMVLPFLCVIIIKLAYITEVFSHIDSTSYAHL*HRLFSI 446
Query: 325 TE*ANYFFNILTTYCMPISGSRSLVVAVAAGEHLVAARCHDXXXXXXXXXXXXXXAHVTA 146
TE +YFFNIL TY MPI+ SR +VVA+AAGEHL+AA C+D AHV A
Sbjct: 445 TEYTHYFFNILATYIMPITQSRGVVVAMAAGEHLLAAGCYDLASPPVMLAPVLHLAHVAA 266
Query: 145 VHLSVAG 125
H+SVAG
Sbjct: 265 AHVSVAG 245
Score = 161 bits (346), Expect(2) = 3e-041
Identities = 77/127 (60%), Positives = 82/127 (64%)
Frame = +3 / +3
Query: 126 PATERWTAVTWXXXXXXXXXXXXXXXXWHRAATRCSPAATATTRLRLPEIGIQYVVRMLK 305
PATE A TW H AA RCSPAA ATT RL IGI YV RMLK
Sbjct: 246 PATETCAAATWARWSTGASITGGDARS*HPAARRCSPAAIATTTPRLWVIGIIYVARMLK 425
Query: 306 K*FAYSVKQNSRCHKCA*AVESIWESTFVIYANFMMMIQTKGSTIASIVAYAGLVARKTS 485
K* YSV N+RCHKCA* VESIWE+T V+YA+FMMM Q KGSTIA I AYAGL ARK +
Sbjct: 426 K*CVYSVILNNRCHKCA*DVESIWENTSVMYASFMMMTQRKGSTIAMIAAYAGLAARKIT 605
Query: 486 STV*SVG 506
TV S G
Sbjct: 606 XTVQSXG 626
Score = 120 bits (257), Expect(3) = 3e-034
Identities = 58/83 (69%), Positives = 66/83 (79%)
Frame = +1 / +1
Query: 253 RGYGFRR*AYNMSSGC*KSSLPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRA 432
R +GF A MS GC*KSS+ TL* T GVTSV K+WSQYGR+LL* MQ+L***+R+RA
Sbjct: 373 RRHGFG*SA*YMSPGC*KSSVCTL*Y*TTGVTSVRKMWSQYGRILL*CMQVL***HRERA 552
Query: 433 VPLHRLWHMQGWWQGKLLPLCEV 501
VPL L HMQGW QGKLLPLC+V
Sbjct: 553 VPLP*LRHMQGWXQGKLLPLCKV 621
Score = 42.8 bits (87), Expect(2) = 1e-085
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2 / +3
Query: 503 GSCYSVILRDNHQCVENS 556
GSCY+V LRDNHQCVE+S
Sbjct: 624 GSCYAVALRDNHQCVEDS 677
Score = 36.3 bits (73), Expect(3) = 3e-034
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1 / +1
Query: 160 QDEARVRALPAEVQDRGT 213
QD ARVRALPAE+QDR T
Sbjct: 280 QDGARVRALPAEMQDRST 333
Score = 32.7 bits (65), Expect(2) = 2e-057
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1 / -1
Query: 558 IEFSTH*WLSRSITE*QDP 502
+E STH*WLSR+ T * DP
Sbjct: 679 LESSTH*WLSRNATA*HDP 623
Score = 29.0 bits (57), Expect(2) = 3e-052
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2 / -2
Query: 557 LSSPHTDGYHGV*QNSRT 504
L+ PHTDGYH Q + T
Sbjct: 678 LNPPHTDGYHATQQRNMT 625
Score = 28.6 bits (56), Expect(2) = 3e-041
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1 / +2
Query: 502 WVLLFCYTP**PSVCG 549
WV+L C **PSVCG
Sbjct: 623 WVMLRCCVA**PSVCG 670
Score = 27.6 bits (54), Expect(2) = 7e-048
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3 / -3
Query: 556 *VLHTLMVITEYNRIAGP 503
*+LHTLMVIT+ N + P
Sbjct: 677 *ILHTLMVITQRNSVT*P 624
Score = 27.2 bits (53), Expect(3) = 3e-034
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3 / +1
Query: 504 GPAILLYSVITISVWRTQ 557
G LL VITISVWR Q
Sbjct: 625 GHVTLLRCVITISVWRIQ 678
>gb|BG369930.2|BG369930 HVSMEi0026J11f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026J11f, mRNA sequence
Length = 682
Score = 269 bits (581), Expect(2) = 2e-078
Identities = 94/173 (54%), Positives = 120/173 (69%)
Frame = +2 / +3
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 81 DRHDIPRHEISKVICSLCNKEQDVHKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 260
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCG 631
GICR GG +NFFHC KCG CYS +L+D+H CVE +M NCP+CYEYLFDS VL+CG
Sbjct: 261 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHHNCPVCYEYLFDSTMDISVLHCG 440
Query: 632 HTMHLTCFEEMVAHNKYTCPICSKTALDLTHHWEMLDQEIEATIMPLVYRYKI 790
HT+HL C EM H+ ++CP+ S+ A D+T W+ LDQE+ T MP Y+ K+
Sbjct: 441 HTIHLECLNEMRVHHHFSCPV*SRPACDMTDAWQKLDQEVAVTPMPEFYQKKM 599
Score = 118 bits (252), Expect = 8e-026
Identities = 66/145 (45%), Positives = 76/145 (52%)
Frame = -1 / -1
Query: 768 GMIVASIS*SNISQ*CVKSRAVLEHIGQVYLLCATISSKHVKCIVCPQFRTLVPCNESNR 589
GM V + S S+ V S+A + G IS +H K IVCPQ TL+ ESNR
Sbjct: 577 GMGVTATSWSSFCHASVMSQAGRDQTGHEKW**TLISFRHSKWIVCPQCSTLMSMVESNR 398
Query: 588 YS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLSVSSS 409
YS*Q GQ I ST * S *Q PHF+QWKK S+PP L MP Q Y +SSS
Sbjct: 397 YS*QTGQL*CIALSTQ**ESFKTLL*QHPHFSQWKKLSMPPVLQMPHPSQ*YWFFEISSS 218
Query: 408 *NLHISQKYSPILTPQLMHTCDTGC 334
LH SQKY P+ PQ T C
Sbjct: 217 KKLHFSQKYFPMHAPQPEQFLCTSC 143
Score = 45.1 bits (92), Expect(2) = 2e-078
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2 / +3
Query: 788 IWVLCNDCNKVSEVNFHVIGHKCSHC 865
+W+LC DC S V FHV+ KC C
Sbjct: 600 VWILCKDCGATSSVRFHVLAQKCPGC 677
>gb|BU987196.1|BU987196 HF14B07r HF Hordeum vulgare subsp. vulgare cDNA clone HF14B07
5-PRIME, mRNA sequence
Length = 613
Score = 137 bits (293), Expect(3) = 2e-077
Identities = 45/73 (61%), Positives = 59/73 (80%)
Frame = +2 / +1
Query: 275 RHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDCG 454
RH + R ++++V+C LC T+Q V Q+CISCGV MG+YFC++CK +DDD K QYHC CG
Sbjct: 196 RHELPRHELQQVICSLCGTEQEVRQICISCGVCMGKYFCEVCKLFDDDVSKQQYHCHGCG 375
Query: 455 ICRVGGKENFFHC 493
ICR+GG+ENFFHC
Sbjct: 376 ICRIGGRENFFHC 414
Score = 101 bits (215), Expect(3) = 2e-077
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +2 / +2
Query: 485 FHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCGHTMHLTCFEEM 664
F CG CYS +L+++H CVE +M +CPIC+EYLF+S VL CGHT+H C +EM
Sbjct: 407 FTAQXCGCCYSTVLKNSHACVEGAMHHDCPICFEYLFESRNDVSVLPCGHTIHEKCLKEM 586
Query: 665 VAHNKYTCP 691
H ++ CP
Sbjct: 587 KEHCQFACP 613
Score = 90.9 bits (192), Expect(3) = 2e-077
Identities = 31/56 (55%), Positives = 40/56 (71%)
Frame = +2 / +1
Query: 101 NDVAEVDAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATAS 268
ND A V+ + E +R + G M++GC HYRRRC+I APCCN +F CRHCHNE+ S
Sbjct: 7 NDTARVNGSNSDEYERFEKGLMEYGCAHYRRRCRIRAPCCNDIFDCRHCHNESKNS 174
Score = 85.4 bits (180), Expect(3) = 5e-031
Identities = 36/57 (63%), Positives = 39/57 (68%)
Frame = -1 / -3
Query: 498 FTQWKKFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQLMHTCDTGCFV 328
F Q KKFSLPP LH+PQ Q YC SSS +LH SQKY P+ TPQLMH C T C V
Sbjct: 419 FEQ*KKFSLPPILHIPQPWQ*YCCFETSSSKSLHTSQKYFPMHTPQLMHICRTSCSV 249
Score = 45.5 bits (93), Expect(3) = 5e-031
Identities = 27/58 (46%), Positives = 31/58 (53%)
Frame = -1 / -2
Query: 672 CATISSKHVKCIVCPQFRTLVPCNESNRYS*QIGQFCLIEFSTH*WLSRSITE*QDPH 499
C+ IS KH IV P RT +SN+YS QIGQ + STH L E*Q PH
Sbjct: 594 CSFISFKHFS*IV*PHGRTETSFLDSNKYSKQIGQS*CMAPSTHA*LFFKTVE*QHPH 421
Score = 42.3 bits (86), Expect(3) = 5e-031
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -1 / -3
Query: 255 SLWQWRQGNTWLQHGATILHLRR*CSHP 172
SLWQ RQ LQ GA + HL R*C+HP
Sbjct: 161 SLWQCRQSKMSLQQGARMRHLLR*CAHP 78
>gb|BF625611.2|BF625611 HVSMEa0011O14f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011O14f, mRNA sequence
Length = 638
Score = 236 bits (509), Expect(2) = 2e-073
Identities = 80/137 (58%), Positives = 102/137 (74%)
Frame = +2 / +2
Query: 380 EYFCDICKFYDDDTDKGQYHCIDCGICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSM 559
+YFC+ C F+DDD K QYHC CGICR GG +NFFHC KCG CYS +L+D+H CVE +M
Sbjct: 2 KYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAM 181
Query: 560 RQNCPICYEYLFDSLQGTRVLNCGHTMHLTCFEEMVAHNKYTCPICSKTALDLTHHWEML 739
QNCP+CYEYLFDS VL+CGHT+HL C EM H+ ++CP+CS++A D+T W+ L
Sbjct: 182 HQNCPVCYEYLFDSTMDISVLHCGHTIHLECLNEMRVHHHFSCPVCSRSACDMTDAWQKL 361
Query: 740 DQEIEATIMPLVYRYKI 790
DQE+ AT MP Y+ K+
Sbjct: 362 DQEVAATPMPEFYQKKM 412
Score = 116 bits (247), Expect = 4e-025
Identities = 64/129 (49%), Positives = 72/129 (55%)
Frame = -1 / -3
Query: 768 GMIVASIS*SNISQ*CVKSRAVLEHIGQVYLLCATISSKHVKCIVCPQFRTLVPCNESNR 589
GM VA+ S S+ V S+A E G IS +H K IVCPQ TL+ ESNR
Sbjct: 390 GMGVAATSWSSFCHASVMSQADREQTGHEKW**TLISFRHSKWIVCPQCSTLMSMVESNR 211
Query: 588 YS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLSVSSS 409
YS*Q GQF I ST * S *Q PHF+QWKK S+PP L MP Q Y +SSS
Sbjct: 210 YS*QTGQF*CIALSTQ**ESFKTLL*QHPHFSQWKKLSMPPVLQMPHPSQ*YWFFEISSS 31
Query: 408 *NLHISQKY 382
LH SQKY
Sbjct: 30 KKLHFSQKY 4
Score = 61.6 bits (128), Expect(2) = 2e-073
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2 / +2
Query: 788 IWVLCNDCNKVSEVNFHVIGHKCSHCRSYNTRTT 889
+W+LCNDC S V FHV+ KC C SYNTR T
Sbjct: 413 VWILCNDCGATSSVRFHVLAQKCPGCSSYNTRET 514
>gb|BF629044.2|BF629044 HVSMEb0009K16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009K16f, mRNA sequence
Length = 852
Score = 263 bits (568), Expect(2) = 3e-070
Identities = 90/160 (56%), Positives = 115/160 (71%)
Frame = +2 / +3
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 291 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 470
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCG 631
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFDS VL+CG
Sbjct: 471 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFDSTMDISVLHCG 650
Query: 632 HTMHLTCFEEMVAHNKYTCPICSKTALDLTHHWEMLDQEI 751
HT+HL C EM H+ ++CP+CS++A D+T + LDQE+
Sbjct: 651 HTIHLECLNEMRGHHHFSCPVCSRSACDMTDALQKLDQEV 770
Score = 116 bits (248), Expect(2) = 7e-033
Identities = 58/110 (52%), Positives = 64/110 (58%)
Frame = -1 / -3
Query: 663 ISSKHVKCIVCPQFRTLVPCNESNRYS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWK 484
IS +H K IVCPQ TL+ ESNRYS*Q GQF I ST * S *Q PHF+QWK
Sbjct: 682 ISFRHSKWIVCPQCSTLMSMVESNRYS*QTGQF*CIALSTQ**ESFKTLL*QHPHFSQWK 503
Query: 483 KFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQLMHTCDTGC 334
K S+PP L MP Q Y +SSS LH SQKY P+ PQ T C
Sbjct: 502 KLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSC 353
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +3
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 123 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 302
Query: 299 VEK 307
+ +
Sbjct: 303 IPR 311
Score = 61.1 bits (127), Expect(2) = 1e-027
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +2
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 332 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 511
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 512 RKMRVLL 532
Score = 45.1 bits (92), Expect(2) = 7e-033
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -1 / -3
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPC 169
S E +A LWQ RQ T Q GA ILHL *CS PC
Sbjct: 277 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPC 173
Score = 23.5 bits (45), Expect(2) = 3e-070
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +2
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 173 ARLRALHEEVQDTG 214
>gb|BQ467017.1|BQ467017 HS02E20r HS Hordeum vulgare subsp. vulgare cDNA clone HS02E20
5-PRIME, mRNA sequence
Length = 587
Score = 258 bits (557), Expect(2) = 2e-069
Identities = 87/153 (56%), Positives = 110/153 (71%)
Frame = +2 / +2
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 128 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 307
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCG 631
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFDS VL+CG
Sbjct: 308 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFDSTMDISVLHCG 487
Query: 632 HTMHLTCFEEMVAHNKYTCPICSKTALDLTHHW 730
HT+HL C EM H+ ++CP+CS++A D+T W
Sbjct: 488 HTIHLECLNEMRVHHHFSCPVCSRSACDMTDAW 586
Score = 117 bits (250), Expect(2) = 2e-033
Identities = 63/129 (48%), Positives = 70/129 (54%)
Frame = -1 / -3
Query: 720 VKSRAVLEHIGQVYLLCATISSKHVKCIVCPQFRTLVPCNESNRYS*QIGQFCLIEFSTH 541
V S+A E G IS +H K IVCPQ TL+ ESNRYS*Q GQF I ST
Sbjct: 576 VMSQADREQTGHEKW**TLISFRHSKWIVCPQCSTLMSMVESNRYS*QTGQF*CIALSTQ 397
Query: 540 *WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQ 361
* S *Q PHF+QWKK S+PP L MP Q Y +SSS LH SQKY P+ PQ
Sbjct: 396 **ESFKTLL*QHPHFSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQ 217
Query: 360 LMHTCDTGC 334
T C
Sbjct: 216 PEQFFCTSC 190
Score = 78.5 bits (165), Expect(2) = 3e-026
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +2 / +2
Query: 167 KHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQDVEK 307
+HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D+ +
Sbjct: 8 RHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPR 148
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +1
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 169 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 348
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 349 RKMRVLL 369
Score = 46.4 bits (95), Expect(2) = 2e-033
Identities = 21/37 (56%), Positives = 23/37 (62%)
Frame = -1 / -3
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPCFI 163
S E +A LWQ RQ T Q GA ILHL *CS PC +
Sbjct: 114 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCLV 4
Score = 25.8 bits (50), Expect(2) = 2e-069
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1 / +1
Query: 166 EARVRALPAEVQDRG 210
EAR+RAL EVQD G
Sbjct: 7 EARLRALHEEVQDTG 51
>gb|BQ466698.1|BQ466698 HS01E20T HS Hordeum vulgare subsp. vulgare cDNA clone HS01E20
5-PRIME, mRNA sequence
Length = 583
Score = 254 bits (549), Expect(2) = 3e-068
Identities = 86/150 (57%), Positives = 109/150 (72%)
Frame = +2 / +2
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 128 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 307
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCG 631
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFDS VL+CG
Sbjct: 308 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFDSTMDISVLHCG 487
Query: 632 HTMHLTCFEEMVAHNKYTCPICSKTALDLT 721
HT+HL C EM H+ ++CP+CS++A D+T
Sbjct: 488 HTIHLECLNEMRVHHHFSCPVCSRSACDMT 577
Score = 117 bits (250), Expect(2) = 2e-033
Identities = 63/129 (48%), Positives = 70/129 (54%)
Frame = -1 / -2
Query: 720 VKSRAVLEHIGQVYLLCATISSKHVKCIVCPQFRTLVPCNESNRYS*QIGQFCLIEFSTH 541
V S+A E G IS +H K IVCPQ TL+ ESNRYS*Q GQF I ST
Sbjct: 576 VMSQADREQTGHEKW**TLISFRHSKWIVCPQCSTLMSMVESNRYS*QTGQF*CIALSTQ 397
Query: 540 *WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQ 361
* S *Q PHF+QWKK S+PP L MP Q Y +SSS LH SQKY P+ PQ
Sbjct: 396 **ESFKTLL*QHPHFSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQ 217
Query: 360 LMHTCDTGC 334
T C
Sbjct: 216 PEQFFCTSC 190
Score = 78.5 bits (165), Expect(2) = 3e-026
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +2 / +2
Query: 167 KHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQDVEK 307
+HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D+ +
Sbjct: 8 RHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPR 148
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +1
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 169 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 348
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 349 RKMRVLL 369
Score = 46.4 bits (95), Expect(2) = 2e-033
Identities = 21/37 (56%), Positives = 23/37 (62%)
Frame = -1 / -2
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPCFI 163
S E +A LWQ RQ T Q GA ILHL *CS PC +
Sbjct: 114 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCLV 4
Score = 25.8 bits (50), Expect(2) = 3e-068
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1 / +1
Query: 166 EARVRALPAEVQDRG 210
EAR+RAL EVQD G
Sbjct: 7 EARLRALHEEVQDTG 51
>gb|AL505025.1|AL505025 AL505025 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07C11V 5', mRNA sequence
Length = 478
Score = 252 bits (545), Expect = 3e-066
Identities = 85/151 (56%), Positives = 112/151 (74%)
Frame = +2 / +3
Query: 299 VEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDCGICRVGGKE 478
+ +V+C LC T+Q V Q+CISCGV MG+YFC++CK +DDD K QYHC CGICR+GG+E
Sbjct: 3 MXQVICSLCGTEQEVRQICISCGVCMGKYFCEVCKLFDDDVSKQQYHCHGCGICRIGGRE 182
Query: 479 NFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCGHTMHLTCFE 658
NFFHC KCG CYS +L+++H CVE +M +CPIC+EYLF+S VL CGHT+H C +
Sbjct: 183 NFFHCSKCGCCYSTVLKNSHACVEGAMHHDCPICFEYLFESRNDVSVLPCGHTIHEKCLK 362
Query: 659 EMVAHNKYTCPICSKTALDLTHHWEMLDQEI 751
EM H ++ CP+CSK+ D+ WE LD E+
Sbjct: 363 EMKEHCQFACPLCSKSVCDMXKAWERLDAEL 455
Score = 133 bits (284), Expect = 3e-030
Identities = 69/138 (50%), Positives = 78/138 (56%)
Frame = -1 / -1
Query: 741 SNISQ*CVKSRAVLEHIGQVYLLCATISSKHVKCIVCPQFRTLVPCNESNRYS*QIGQFC 562
S++S S LE G C+ IS KH IV P RT +SN+YS QIGQ
Sbjct: 445 SSLSHAFXMSHTDLEQSGHANWQCSFISFKHFS*IV*PHGRTETSFLDSNKYSKQIGQS* 266
Query: 561 LIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQKY 382
+ STH L E*Q PHF Q KKFSLPP LH+PQ Q YC SSS +LH SQKY
Sbjct: 265 CMAPSTHA*LFFKTVE*QHPHFEQ*KKFSLPPILHIPQPWQ*YCCFETSSSKSLHTSQKY 86
Query: 381 SPILTPQLMHTCDTGCFV 328
P+ TPQLMH C T C V
Sbjct: 85 FPMHTPQLMHICRTSCSV 32
>gb|BG343770.2|BG343770 HVSMEg0006L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006L08f, mRNA sequence
Length = 996
Score = 231 bits (498), Expect(3) = 9e-066
Identities = 80/140 (57%), Positives = 97/140 (69%)
Frame = +2 / +2
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 260 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 439
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCG 631
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFDS VL+CG
Sbjct: 440 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFDSTMDISVLHCG 619
Query: 632 HTMHLTCFEEMVAHNKYTCP 691
HT+HL C EM H+ P
Sbjct: 620 HTIHLECLNEMRVHHHXLVP 679
Score = 116 bits (248), Expect(2) = 7e-033
Identities = 58/110 (52%), Positives = 64/110 (58%)
Frame = -1 / -1
Query: 663 ISSKHVKCIVCPQFRTLVPCNESNRYS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWK 484
IS +H K IVCPQ TL+ ESNRYS*Q GQF I ST * S *Q PHF+QWK
Sbjct: 651 ISFRHSKWIVCPQCSTLMSMVESNRYS*QTGQF*CIALSTQ**ESFKTLL*QHPHFSQWK 472
Query: 483 KFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQLMHTCDTGC 334
K S+PP L MP Q Y +SSS LH SQKY P+ PQ T C
Sbjct: 471 KLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSC 322
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +2
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 92 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 271
Query: 299 VEK 307
+ +
Sbjct: 272 IPR 280
Score = 61.1 bits (127), Expect(2) = 1e-027
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +1
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 301 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 480
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 481 RKMRVLL 501
Score = 45.1 bits (92), Expect(2) = 7e-033
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -1 / -1
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPC 169
S E +A LWQ RQ T Q GA ILHL *CS PC
Sbjct: 246 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPC 142
Score = 35.9 bits (72), Expect(3) = 9e-066
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2 / +3
Query: 683 TCPICSKTALDLTHHWEMLDQEIEA 757
+CP+CS++A D+T W LD + A
Sbjct: 672 SCPVCSRSACDMTDAWXKLDXXVAA 746
Score = 23.5 bits (45), Expect(3) = 9e-066
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 142 ARLRALHEEVQDTG 183
>gb|CB882449.1|CB882449 HL01O07w HL Hordeum vulgare subsp. vulgare cDNA clone HL01O07
3-PRIME, mRNA sequence
Length = 593
Score = 198 bits (427), Expect(2) = 2e-062
Identities = 66/118 (55%), Positives = 86/118 (72%)
Frame = +2 / +1
Query: 398 CKFYDDDTDKGQYHCIDCGICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPI 577
CK +DDD K QYHC CGICR+GG+ENFFHC KCG CYS +L+++H CVE +M +CPI
Sbjct: 7 CKLFDDDVSKQQYHCHGCGICRIGGRENFFHCSKCGCCYSTVLKNSHACVEGAMHHDCPI 186
Query: 578 CYEYLFDSLQGTRVLNCGHTMHLTCFEEMVAHNKYTCPICSKTALDLTHHWEMLDQEI 751
C+EYLF+S VL CGHT+H C +EM H ++ CP+CSK+ D++ WE LD E+
Sbjct: 187 CFEYLFESRNDVSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAEL 360
Score = 95.9 bits (203), Expect(2) = 5e-023
Identities = 54/115 (46%), Positives = 62/115 (53%)
Frame = -1 / -1
Query: 741 SNISQ*CVKSRAVLEHIGQVYLLCATISSKHVKCIVCPQFRTLVPCNESNRYS*QIGQFC 562
S++S S LE G C+ IS KH IV P RT +SN+YS QIGQ
Sbjct: 350 SSLSHAFDMSHTDLEQSGHANWQCSFISFKHFS*IV*PHGRTETSFLDSNKYSKQIGQS* 171
Query: 561 LIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLSVSSS*NLH 397
+ STH L E*Q PHF Q KKFSLPP LH+PQ Q YC SSS +LH
Sbjct: 170 CMAPSTHA*LFFKTVE*QHPHFEQ*KKFSLPPILHIPQPWQ*YCCFETSSSKSLH 6
Score = 62.5 bits (130), Expect(2) = 2e-062
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +2 / +1
Query: 794 VLCNDCNKVSEVNFHVIGHKCSHCRSYNTR 883
+LCNDC VSEV FH+I HKC C+SYNTR
Sbjct: 400 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTR 489
Score = 32.7 bits (65), Expect(2) = 5e-023
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = -3 / -3
Query: 883 SGVVRSAVAALVANHVKVHL*DLVAIVAKHPN 788
SGVV A AL+ N VK+HL* AI+A++ N
Sbjct: 489 SGVV*LATMALMCN*VKLHL*YRPAIIAQYAN 394
>gb|BJ467124.1|BJ467124 BJ467124 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36c23 3', mRNA sequence
Length = 672
Score = 237 bits (512), Expect = 1e-061
Identities = 89/103 (86%), Positives = 95/103 (92%)
Frame = +2 / -1
Query: 593 FDSLQGTRVLNCGHTMHLTCFEEMVAHNKYTCPICSKTALDLTHHWEMLDQEIEATIMPL 772
FDSL+GTRV NCGHTMH+ CF EMV HNKYTCPICSKTALD+T HW MLDQEIEATIMP
Sbjct: 672 FDSLKGTRVXNCGHTMHMDCFAEMVDHNKYTCPICSKTALDMTVHWGMLDQEIEATIMPP 493
Query: 773 VYRYKIWVLCNDCNKVSEVNFHVIGHKCSHCRSYNTRTTSRPA 901
VYRYK+WVLCNDCNKVSEV+FHVIGHKCSHC SYNTR+TSRPA
Sbjct: 492 VYRYKVWVLCNDCNKVSEVDFHVIGHKCSHCNSYNTRSTSRPA 364
Score = 167 bits (360), Expect = 1e-040
Identities = 78/112 (69%), Positives = 84/112 (75%)
Frame = -1 / +2
Query: 930 VEGELLPDKSAGRDVVRVLYDLQWLHLWPIT*KFXXXXXXXXXXXXQIL*RYTRGMIVAS 751
V+GELLPDKSAGRDV RVLY+LQWLHLWPIT K Q L*RYT G+IVAS
Sbjct: 335 VDGELLPDKSAGRDVDRVLYELQWLHLWPITWKSTSETLLQSLQRTQTL*RYTGGIIVAS 514
Query: 750 IS*SNISQ*CVKSRAVLEHIGQVYLLCATISSKHVKCIVCPQFRTLVPCNES 595
IS*SN+ Q* V SRAVLEHIGQVYLL +TIS+K C VCPQ TLVP NES
Sbjct: 515 IS*SNMPQ*TVISRAVLEHIGQVYLLWSTISAKQSMCXVCPQLXTLVPFNES 670
Score = 158 bits (339), Expect = 8e-038
Identities = 70/113 (61%), Positives = 84/113 (74%)
Frame = -3 / +1
Query: 931 C*R*AASG*ICRARCCSGVVRSAVAALVANHVKVHL*DLVAIVAKHPNLVAIHKRHDRGF 752
C R AS *ICR R S VV A+AAL+ANHV+VH *D VA++AK+PNLV I++RH+ F
Sbjct: 334 CRRRTAS**ICRPRRRSSVV*VAMAALMANHVEVHF*DFVAVIAKNPNLVTIYRRHNCCF 513
Query: 751 DLLIQHFPMMCQIKSCFRAYWTSVFVMRHHFFKTCQVHCVSTVQNSCSL**VK 593
+LLIQH P+ C IKSC YWTSVF+M HH +T VH VSTV NSCS **+K
Sbjct: 514 NLLIQHAPVNCHIKSCLGTYWTSVFIMVHHLSETVHVHXVSTVXNSCSF**IK 672
Score = 119 bits (255), Expect = 3e-026
Identities = 56/113 (49%), Positives = 64/113 (56%)
Frame = +3 / -2
Query: 594 LTHYKEQEF*TVDTQCT*HVLKKWWRITNTLVQYALKQLLI*HIIGKCWIKRSKPRSCLL 773
L H KEQE TVDT CT V +WW I NTLVQY +QLLI* G CWIKR K + CLL
Sbjct: 671 LIH*KEQEXLTVDTXCTWTVSLRWWTIINTLVQYVPRQLLI*QFTGACWIKRLKQQLCLL 492
Query: 774 CIATRFGCFATIATRSQRXXXXXXXXXXXXXXXXXPEQHRALQIYPEAAHLQQ 932
I TRFG FA AT+SQ+ ++ R LQIY EA +Q
Sbjct: 491 YIVTRFGFFAMTATKSQKWTST*LAISAAIATHTTLDRRRGLQIYQEAVLRRQ 333
Score = 113 bits (242), Expect = 2e-024
Identities = 50/84 (59%), Positives = 60/84 (71%)
Frame = -2 / +3
Query: 845 QSRESSPLRPCCNRCKAPKSCSDTQEA*SWLRSLDPTFPNDVSNQELF*SILDKCICYAP 666
QSR S LR CC+ CK PK C+D QEA* L+SLDPT P+++S QEL +ILDKCI Y P
Sbjct: 420 QSRGSPLLRLCCSHCKEPKPCNDIQEA*LLLQSLDPTCPSELSYQELSWNILDKCIYYGP 599
Query: 665 PFLQNMSSALCVHSSELLFLVMSQ 594
P +N A CVHS LLFL+M+Q
Sbjct: 600 PSQRNSPCAXCVHS*XLLFLLMNQ 671
Score = 81.3 bits (171), Expect(2) = 3e-024
Identities = 38/62 (61%), Positives = 48/62 (77%)
Frame = +1 / -3
Query: 595 *LITRNKSSELWTHNALDMF*RNGGA*QIHLSNML*NSS*FDTSLGNVGSRDRSHDHASC 774
* I RNKS LWTH A +F +GG * IHLSNM +SS*+D+SLG+VGSRD S+++ASC
Sbjct: 670 *FIKRNKSX*LWTHXAHGLFR*DGGP**IHLSNMFQDSS*YDSSLGHVGSRD*SNNYASC 491
Query: 775 VS 780
+S
Sbjct: 490 IS 485
Score = 51.5 bits (106), Expect(2) = 3e-024
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1 / -3
Query: 841 DWPQVQPLQIVQHPNNIAPCRFIRKQLT 924
DWP VQPLQ++QH ++A CRFIRKQ +
Sbjct: 424 DWP*VQPLQLIQHSIDVAACRFIRKQFS 341
>gb|CA008597.1|CA008597 HU11H12r HU Hordeum vulgare subsp. vulgare cDNA clone HU11H12
5-PRIME, mRNA sequence
Length = 614
Score = 226 bits (489), Expect = 2e-058
Identities = 81/125 (64%), Positives = 99/125 (79%)
Frame = +2 / +3
Query: 248 HNEATASGDRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDK 427
H ++ D H + R V+ V+CL+C+T+QPV+QVC +CGV MG+YFC CKF+DDD DK
Sbjct: 240 HCHNDSTKDGHELDRHAVQSVICLVCDTEQPVAQVCSNCGVCMGDYFCRACKFFDDDVDK 419
Query: 428 GQYHCIDCGICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQ 607
QYHC DCGICRVGGK+NFFHC KCGSCYSV LRD H C+E++M+ NCPICYEYLFDSL+
Sbjct: 420 EQYHCKDCGICRVGGKDNFFHCHKCGSCYSVTLRDKHVCIEDAMKNNCPICYEYLFDSLR 599
Query: 608 GTRVL 622
VL
Sbjct: 600 EASVL 614
Score = 148 bits (317), Expect(2) = 5e-045
Identities = 63/91 (69%), Positives = 67/91 (73%)
Frame = -1 / -2
Query: 600 ESNRYS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLS 421
ESNRYS*QIGQ I S H LS +TE* DPH QWKK SLPPTL MPQS+QWYC LS
Sbjct: 592 ESNRYS*QIGQLFFIASSMHTCLSLRVTE*HDPHLWQWKKLSLPPTLQMPQSLQWYCSLS 413
Query: 420 VSSS*NLHISQKYSPILTPQLMHTCDTGCFV 328
SSS NLH QK SP+ TPQL+HTC TGC V
Sbjct: 412 TSSSKNLHARQK*SPMHTPQLLHTCATGCSV 320
Score = 80.3 bits (169), Expect(2) = 3e-027
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = +2 / +3
Query: 146 RRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASG 271
R KM GC+HYRRRC+I APCCN VF CRHCHN++T G
Sbjct: 144 RHGFAKMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNDSTKDG 269
Score = 62.5 bits (130), Expect(2) = 3e-027
Identities = 32/64 (50%), Positives = 44/64 (68%)
Frame = +1 / +2
Query: 322 L*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPLCEV 501
L*++ AG SV +L +G +LL +QIL RQ A+PL RL H+QGW QG+LLPL +V
Sbjct: 314 L*HRAAGGASVQQLRRVHGGLLLPGVQILRRRRRQGAIPLQRLRHLQGWRQGQLLPLPQV 493
Query: 502 WVLL 513
++L
Sbjct: 494 RIVL 505
Score = 54.2 bits (112), Expect(2) = 5e-045
Identities = 22/33 (66%), Positives = 22/33 (66%)
Frame = -1 / -2
Query: 270 PEAVASLWQWRQGNTWLQHGATILHLRR*CSHP 172
P V SLWQWRQ T LQHGA ILH *C HP
Sbjct: 268 PSFVESLWQWRQWKTSLQHGARILHRLL*CLHP 170
>gb|BQ465500.1|BQ465500 HU03N03r HU Hordeum vulgare subsp. vulgare cDNA clone HU03N03
5-PRIME, mRNA sequence
Length = 575
Score = 222 bits (479), Expect(2) = 5e-058
Identities = 76/127 (59%), Positives = 92/127 (72%)
Frame = +2 / +1
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 193 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 372
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCG 631
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFDS VL+CG
Sbjct: 373 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFDSTMDISVLHCG 552
Query: 632 HTMHLTC 652
HT+HL C
Sbjct: 553 HTIHLEC 573
Score = 113 bits (242), Expect(2) = 5e-032
Identities = 56/107 (52%), Positives = 62/107 (57%)
Frame = -1 / -1
Query: 654 KHVKCIVCPQFRTLVPCNESNRYS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWKKFS 475
+H K IVCPQ TL+ ESNRYS*Q GQF I ST * S *Q PHF+QWKK S
Sbjct: 575 RHSKWIVCPQCSTLMSMVESNRYS*QTGQF*CIALSTQ**ESFKTLL*QHPHFSQWKKLS 396
Query: 474 LPPTLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQLMHTCDTGC 334
+PP L MP Q Y +SSS LH SQKY P+ PQ T C
Sbjct: 395 MPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSC 255
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +1
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 25 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 204
Query: 299 VEK 307
+ +
Sbjct: 205 IPR 213
Score = 61.1 bits (127), Expect(2) = 1e-027
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +3
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 234 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 413
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 414 RKMRVLL 434
Score = 45.1 bits (92), Expect(2) = 5e-032
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -1 / -1
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPC 169
S E +A LWQ RQ T Q GA ILHL *CS PC
Sbjct: 179 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPC 75
Score = 23.5 bits (45), Expect(2) = 5e-058
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 75 ARLRALHEEVQDTG 116
>gb|CA002379.1|CA002379 HS07F02r HS Hordeum vulgare subsp. vulgare cDNA clone HS07F02
5-PRIME, mRNA sequence
Length = 503
Score = 218 bits (471), Expect(2) = 1e-057
Identities = 75/125 (60%), Positives = 91/125 (72%)
Frame = +2 / +2
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 128 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 307
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCG 631
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFDS VL+CG
Sbjct: 308 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFDSTMDISVLHCG 487
Query: 632 HTMHL 646
HT+HL
Sbjct: 488 HTIHL 502
Score = 110 bits (234), Expect(2) = 2e-031
Identities = 55/104 (52%), Positives = 60/104 (57%)
Frame = -1 / -3
Query: 645 KCIVCPQFRTLVPCNESNRYS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWKKFSLPP 466
K IVCPQ TL+ ESNRYS*Q GQF I ST * S *Q PHF+QWKK S+PP
Sbjct: 501 KWIVCPQCSTLMSMVESNRYS*QTGQF*CIALSTQ**ESFKTLL*QHPHFSQWKKLSMPP 322
Query: 465 TLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQLMHTCDTGC 334
L MP Q Y +SSS LH SQKY P+ PQ T C
Sbjct: 321 VLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSC 190
Score = 78.5 bits (165), Expect(2) = 3e-026
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +2 / +2
Query: 167 KHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQDVEK 307
+HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D+ +
Sbjct: 8 RHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPR 148
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +1
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 169 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 348
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 349 RKMRVLL 369
Score = 46.4 bits (95), Expect(2) = 2e-031
Identities = 21/37 (56%), Positives = 23/37 (62%)
Frame = -1 / -3
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPCFI 163
S E +A LWQ RQ T Q GA ILHL *CS PC +
Sbjct: 114 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCLV 4
Score = 25.8 bits (50), Expect(2) = 1e-057
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1 / +1
Query: 166 EARVRALPAEVQDRG 210
EAR+RAL EVQD G
Sbjct: 7 EARLRALHEEVQDTG 51
>gb|AV936335.1|AV936335 AV936335 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10p08 3', mRNA sequence
Length = 678
Score = 179 bits (385), Expect(2) = 9e-057
Identities = 59/107 (55%), Positives = 79/107 (73%)
Frame = +2 / -3
Query: 431 QYHCIDCGICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQG 610
+YHC CGICR+GG+ENFFHC KCG CYS +L+++H CVE +M +CPIC+EYLF+S
Sbjct: 637 RYHCHGCGICRIGGRENFFHCSKCGCCYSTVLKNSHACVEGAMHHDCPICFEYLFESRND 458
Query: 611 TRVLNCGHTMHLTCFEEMVAHNKYTCPICSKTALDLTHHWEMLDQEI 751
VL CGHT+H C +EM H ++ CP+CSK+ D++ WE LD E+
Sbjct: 457 VSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAEL 317
Score = 62.5 bits (130), Expect(2) = 9e-057
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +2 / -3
Query: 794 VLCNDCNKVSEVNFHVIGHKCSHCRSYNTR 883
+LCNDC VSEV FH+I HKC C+SYNTR
Sbjct: 277 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTR 188
>gb|CD662384.1|CD662384 UCRHV18_02aa05_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02aa05, mRNA sequence
Length = 896
Score = 172 bits (371), Expect(2) = 1e-054
Identities = 59/104 (56%), Positives = 78/104 (75%)
Frame = +2 / -3
Query: 479 NFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCGHTMHLTCFE 658
+FFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFDS VL+CGHT+HL C
Sbjct: 870 HFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFDSTMDISVLHCGHTIHLECLN 691
Query: 659 EMVAHNKYTCPICSKTALDLTHHWEMLDQEIEATIMPLVYRYKI 790
EM H+ ++CP+CS++A D+T W+ LDQE+ AT MP Y+ K+
Sbjct: 690 EMRVHHHFSCPVCSRSACDMTDAWQKLDQEVAATPMPEFYQKKM 559
Score = 61.6 bits (128), Expect(2) = 1e-054
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2 / -3
Query: 788 IWVLCNDCNKVSEVNFHVIGHKCSHCRSYNTRTT 889
+W+LCNDC S V FHV+ KC C SYNTR T
Sbjct: 558 VWILCNDCGATSSVRFHVLAQKCPGCSSYNTRET 457
>gb|CD663353.1|CD663353 UCRHV18_05ah10_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05ah10, mRNA sequence
Length = 706
Score = 171 bits (369), Expect(2) = 1e-054
Identities = 57/104 (54%), Positives = 76/104 (73%)
Frame = +2 / -2
Query: 440 CIDCGICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRV 619
C CGICR+GG+ENFFHC KCG CYS +L+++H CVE +M +CPIC+EYLF+S V
Sbjct: 705 CHGCGICRIGGRENFFHCSKCGCCYSTVLKNSHACVEGAMHHDCPICFEYLFESRNDVSV 526
Query: 620 LNCGHTMHLTCFEEMVAHNKYTCPICSKTALDLTHHWEMLDQEI 751
L CGHT+H C +EM H ++ CP+CSK+ D++ WE LD E+
Sbjct: 525 LPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAEL 394
Score = 62.5 bits (130), Expect(2) = 1e-054
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +2 / -2
Query: 794 VLCNDCNKVSEVNFHVIGHKCSHCRSYNTR 883
+LCNDC VSEV FH+I HKC C+SYNTR
Sbjct: 354 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTR 265
>gb|AW983496.2|AW983496 HVSMEg0010N10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010N10f, mRNA sequence
Length = 884
Score = 115 bits (246), Expect(3) = 2e-054
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +1
Query: 449 CGICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQG 610
CGICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFDS G
Sbjct: 1 CGICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFDSTMG 162
Score = 82.2 bits (173), Expect(3) = 2e-054
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +2 / +2
Query: 617 VLNCGHTMHLTCFEEMVAHNKYTCPICSKTALDLTHHWEMLDQEIEATIMPLVYRYKI 790
VL+CGHT+HL C EM H+ ++ P+CS++A D+T W+ LDQE+ AT MP Y+ K+
Sbjct: 170 VLHCGHTIHLECLNEMRVHHHFSGPVCSRSACDMTDAWQKLDQEVAATPMPEFYQKKM 343
Score = 54.7 bits (113), Expect(3) = 2e-054
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2 / +2
Query: 788 IWVLCNDCNKVSEVNFHVIGHKCSHCRSYNT 880
+W+LCNDC S V FHV+ KC C YNT
Sbjct: 344 VWILCNDCGATSSVRFHVLAQKCPGCSFYNT 436
>gb|BU971843.1|BU971843 HB19N11r BC Hordeum vulgare subsp. vulgare cDNA clone HB19N11
5-PRIME, mRNA sequence
Length = 633
Score = 137 bits (293), Expect(2) = 1e-052
Identities = 45/73 (61%), Positives = 59/73 (80%)
Frame = +2 / +2
Query: 275 RHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDCG 454
RH + R ++++V+C LC T+Q V Q+CISCGV MG+YFC++CK +DDD K QYHC CG
Sbjct: 413 RHELPRHELQQVICSLCGTEQEVRQICISCGVCMGKYFCEVCKLFDDDVSKQQYHCHGCG 592
Query: 455 ICRVGGKENFFHC 493
ICR+GG+ENFFHC
Sbjct: 593 ICRIGGRENFFHC 631
Score = 90.9 bits (192), Expect(2) = 1e-052
Identities = 31/56 (55%), Positives = 40/56 (71%)
Frame = +2 / +2
Query: 101 NDVAEVDAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATAS 268
ND A V+ + E +R + G M++GC HYRRRC+I APCCN +F CRHCHNE+ S
Sbjct: 224 NDTARVNGSNSDEYERFEKGLMEYGCAHYRRRCRIRAPCCNDIFDCRHCHNESKNS 391
Score = 83.1 bits (175), Expect(2) = 4e-022
Identities = 35/55 (63%), Positives = 38/55 (69%)
Frame = -1 / -1
Query: 492 QWKKFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQLMHTCDTGCFV 328
Q KKFSLPP LH+PQ Q YC SSS +LH SQKY P+ TPQLMH C T C V
Sbjct: 630 Q*KKFSLPPILHIPQPWQ*YCCFETSSSKSLHTSQKYFPMHTPQLMHICRTSCSV 466
Score = 42.3 bits (86), Expect(2) = 4e-022
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -1 / -1
Query: 255 SLWQWRQGNTWLQHGATILHLRR*CSHP 172
SLWQ RQ LQ GA + HL R*C+HP
Sbjct: 378 SLWQCRQSKMSLQQGARMRHLLR*CAHP 295
>gb|BF616887.1|BF616887 HVSMEc0013G20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0013G20f, mRNA sequence
Length = 584
Score = 145 bits (312), Expect(2) = 5e-052
Identities = 50/74 (67%), Positives = 61/74 (82%)
Frame = +2 / +1
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
D H + R V+ V+CL+C+T+QPV+QVC +CGV MG+YFC CKF+DDD DK QYHC DC
Sbjct: 358 DGHELDRHAVQSVICLVCDTEQPVAQVCSNCGVCMGDYFCRACKFFDDDVDKEQYHCKDC 537
Query: 452 GICRVGGKENFFHC 493
GICRVGGK+NFFHC
Sbjct: 538 GICRVGGKDNFFHC 579
Score = 105 bits (223), Expect(2) = 3e-031
Identities = 41/55 (74%), Positives = 44/55 (80%)
Frame = -1 / -1
Query: 492 QWKKFSLPPTLHMPQSMQWYCPLSVSSS*NLHISQKYSPILTPQLMHTCDTGCFV 328
QWKK SLPPTL MPQS+QWYC LS SSS NLH QK SP+ TPQL+HTC TGC V
Sbjct: 578 QWKKLSLPPTLQMPQSLQWYCSLSTSSSKNLHARQK*SPMHTPQLLHTCATGCSV 414
Score = 79.9 bits (168), Expect(2) = 5e-052
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +2 / +1
Query: 146 RRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATAS 268
R KM GC+HYRRRC+I APCCN VF CRHCHN++T S
Sbjct: 121 RHGFAKMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNDSTVS 243
Score = 54.2 bits (112), Expect(2) = 3e-031
Identities = 22/32 (68%), Positives = 22/32 (68%)
Frame = -1 / -1
Query: 267 EAVASLWQWRQGNTWLQHGATILHLRR*CSHP 172
E V SLWQWRQ T LQHGA ILH *C HP
Sbjct: 242 ETVESLWQWRQWKTSLQHGARILHRLL*CLHP 147
>gb|AV923368.1|AV923368 AV923368 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12n20 5', mRNA sequence
Length = 645
Score = 197 bits (425), Expect(2) = 1e-050
Identities = 67/110 (60%), Positives = 81/110 (73%)
Frame = +2 / +1
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 310 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 489
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDS 601
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFDS
Sbjct: 490 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFDS 639
Score = 94.5 bits (200), Expect(2) = 3e-026
Identities = 47/89 (52%), Positives = 51/89 (57%)
Frame = -1 / -2
Query: 600 ESNRYS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLS 421
ESNRYS*Q GQF I ST * S *Q PHF+QWKK S+PP L MP Q Y
Sbjct: 638 ESNRYS*QTGQF*CIALSTQ**ESFKTLL*QHPHFSQWKKLSMPPVLQMPHPSQ*YWFFE 459
Query: 420 VSSS*NLHISQKYSPILTPQLMHTCDTGC 334
+SSS LH SQKY P+ PQ T C
Sbjct: 458 ISSSKKLHFSQKYFPMHAPQPEQFFCTSC 372
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +1
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 142 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 321
Query: 299 VEK 307
+ +
Sbjct: 322 IPR 330
Score = 61.1 bits (127), Expect(2) = 1e-027
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +3
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 351 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 530
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 531 RKMRVLL 551
Score = 45.1 bits (92), Expect(2) = 3e-026
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -1 / -2
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPC 169
S E +A LWQ RQ T Q GA ILHL *CS PC
Sbjct: 296 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPC 192
Score = 23.5 bits (45), Expect(2) = 1e-050
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 192 ARLRALHEEVQDTG 233
>gb|AV927080.1|AV927080 AV927080 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26k21 5', mRNA sequence
Length = 605
Score = 197 bits (425), Expect(2) = 1e-050
Identities = 67/110 (60%), Positives = 81/110 (73%)
Frame = +2 / +2
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 275 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 454
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDS 601
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFDS
Sbjct: 455 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFDS 604
Score = 94.5 bits (200), Expect(2) = 3e-026
Identities = 47/89 (52%), Positives = 51/89 (57%)
Frame = -1 / -3
Query: 600 ESNRYS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLS 421
ESNRYS*Q GQF I ST * S *Q PHF+QWKK S+PP L MP Q Y
Sbjct: 603 ESNRYS*QTGQF*CIALSTQ**ESFKTLL*QHPHFSQWKKLSMPPVLQMPHPSQ*YWFFE 424
Query: 420 VSSS*NLHISQKYSPILTPQLMHTCDTGC 334
+SSS LH SQKY P+ PQ T C
Sbjct: 423 ISSSKKLHFSQKYFPMHAPQPEQFFCTSC 337
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +2
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 107 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 286
Query: 299 VEK 307
+ +
Sbjct: 287 IPR 295
Score = 61.1 bits (127), Expect(2) = 1e-027
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +1
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 316 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 495
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 496 RKMRVLL 516
Score = 45.1 bits (92), Expect(2) = 3e-026
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -1 / -3
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPC 169
S E +A LWQ RQ T Q GA ILHL *CS PC
Sbjct: 261 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPC 157
Score = 23.5 bits (45), Expect(2) = 1e-050
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 157 ARLRALHEEVQDTG 198
>gb|CA007573.1|CA007573 HU08G03r HU Hordeum vulgare subsp. vulgare cDNA clone HU08G03
5-PRIME, mRNA sequence
Length = 592
Score = 195 bits (421), Expect(2) = 4e-050
Identities = 66/109 (60%), Positives = 80/109 (73%)
Frame = +2 / +1
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 265 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 444
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFD 598
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYEYLFD
Sbjct: 445 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEYLFD 591
Score = 92.3 bits (195), Expect(2) = 1e-025
Identities = 46/88 (52%), Positives = 50/88 (56%)
Frame = -1 / -3
Query: 597 SNRYS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLSV 418
SNRYS*Q GQF I ST * S *Q PHF+QWKK S+PP L MP Q Y +
Sbjct: 590 SNRYS*QTGQF*CIALSTQ**ESFKTLL*QHPHFSQWKKLSMPPVLQMPHPSQ*YWFFEI 411
Query: 417 SSS*NLHISQKYSPILTPQLMHTCDTGC 334
SSS LH SQKY P+ PQ T C
Sbjct: 410 SSSKKLHFSQKYFPMHAPQPEQFFCTSC 327
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +1
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 97 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 276
Query: 299 VEK 307
+ +
Sbjct: 277 IPR 285
Score = 61.1 bits (127), Expect(2) = 1e-027
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +3
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 306 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 485
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 486 RKMRVLL 506
Score = 45.1 bits (92), Expect(2) = 1e-025
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -1 / -3
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPC 169
S E +A LWQ RQ T Q GA ILHL *CS PC
Sbjct: 251 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPC 147
Score = 23.5 bits (45), Expect(2) = 4e-050
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 147 ARLRALHEEVQDTG 188
>gb|BG342914.2|BG342914 HVSMEg0001E07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001E07f, mRNA sequence
Length = 823
Score = 122 bits (261), Expect(2) = 5e-048
Identities = 43/75 (57%), Positives = 57/75 (76%)
Frame = +2 / +2
Query: 275 RHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDCG 454
RH + R ++++V+C LC T+Q V Q+CISCGV MG+YFC++ K +DDD K Q HC CG
Sbjct: 290 RHELSRHELQQVICSLCGTEQEVRQICISCGVCMGKYFCEMSKLFDDDGSKQQDHCHGCG 469
Query: 455 ICRVGGKENFFHCVK 499
IC+ GG+ENFFH VK
Sbjct: 470 ICKNGGRENFFHLVK 514
Score = 90.0 bits (190), Expect(2) = 5e-048
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +2 / +2
Query: 101 NDVAEVDAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATAS 268
ND A V+ + E +R + G M++GC HYRR+C+I APCCN +F CRHCHNE+ S
Sbjct: 101 NDTARVNGSNSDEYERFEKGLMEYGCAHYRRKCRIPAPCCNDIFDCRHCHNESKNS 268
>gb|CA008104.1|CA008104 HU09O15r HU Hordeum vulgare subsp. vulgare cDNA clone HU09O15
5-PRIME, mRNA sequence
Length = 651
Score = 188 bits (405), Expect(2) = 7e-048
Identities = 65/115 (56%), Positives = 80/115 (69%)
Frame = +2 / +2
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 299 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 478
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTR 616
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CYE S QG +
Sbjct: 479 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCYEVRLCSNQGPK 643
Score = 83.5 bits (176), Expect(2) = 5e-023
Identities = 45/94 (47%), Positives = 50/94 (53%)
Frame = -1 / -1
Query: 615 LVPCNESNRYS*QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQW 436
L P E + S*Q GQF I ST * S *Q PHF+QWKK S+PP L MP Q
Sbjct: 642 LGP*LEQSLTS*QTGQF*CIALSTQ**ESFKTLL*QHPHFSQWKKLSMPPVLQMPHPSQ* 463
Query: 435 YCPLSVSSS*NLHISQKYSPILTPQLMHTCDTGC 334
Y +SSS LH SQKY P+ PQ T C
Sbjct: 462 YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSC 361
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +2
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 131 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 310
Query: 299 VEK 307
+ +
Sbjct: 311 IPR 319
Score = 61.1 bits (127), Expect(2) = 1e-027
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +1
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 340 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 519
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 520 RKMRVLL 540
Score = 45.1 bits (92), Expect(2) = 5e-023
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -1 / -1
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPC 169
S E +A LWQ RQ T Q GA ILHL *CS PC
Sbjct: 285 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPC 181
Score = 23.5 bits (45), Expect(2) = 7e-048
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 181 ARLRALHEEVQDTG 222
>gb|CA008721.1|CA008721 HU11O06r HU Hordeum vulgare subsp. vulgare cDNA clone HU11O06
5-PRIME, mRNA sequence
Length = 610
Score = 182 bits (393), Expect(2) = 3e-046
Identities = 61/104 (58%), Positives = 75/104 (72%)
Frame = +2 / +2
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 299 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 478
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENSMRQNCPICY 583
GICR GG +NFFHC KCG CYS +L+D+H CVE +M QNCP+CY
Sbjct: 479 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERAMHQNCPVCY 610
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +2
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 131 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 310
Query: 299 VEK 307
+ +
Sbjct: 311 IPR 319
Score = 80.3 bits (169), Expect(2) = 4e-022
Identities = 41/83 (49%), Positives = 45/83 (54%)
Frame = -1 / -2
Query: 582 *QIGQFCLIEFSTH*WLSRSITE*QDPHFTQWKKFSLPPTLHMPQSMQWYCPLSVSSS*N 403
*Q GQF I ST * S *Q PHF+QWKK S+PP L MP Q Y +SSS
Sbjct: 609 *QTGQF*CIALSTQ**ESFKTLL*QHPHFSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKK 430
Query: 402 LHISQKYSPILTPQLMHTCDTGC 334
LH SQKY P+ PQ T C
Sbjct: 429 LHFSQKYFPMHAPQPEQFFCTSC 361
Score = 61.1 bits (127), Expect(2) = 1e-027
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +1
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 340 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 519
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 520 RKMRVLL 540
Score = 45.1 bits (92), Expect(2) = 4e-022
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -1 / -2
Query: 273 SPEAVASLWQWRQGNTWLQHGATILHLRR*CSHPC 169
S E +A LWQ RQ T Q GA ILHL *CS PC
Sbjct: 285 SSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPC 181
Score = 23.5 bits (45), Expect(2) = 3e-046
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 181 ARLRALHEEVQDTG 222
>gb|CB880964.1|CB880964 HM08F20w HM Hordeum vulgare subsp. vulgare cDNA clone HM08F20
3-PRIME, mRNA sequence
Length = 663
Score = 138 bits (297), Expect(2) = 1e-044
Identities = 46/89 (51%), Positives = 63/89 (70%)
Frame = +2 / -2
Query: 485 FHCVKCGSCYSVILRDNHQCVENSMRQNCPICYEYLFDSLQGTRVLNCGHTMHLTCFEEM 664
FHC KCG CYS +L+++H CVE +M +CPIC+EYLF+S VL CGHT+H C +EM
Sbjct: 662 FHCSKCGCCYSTVLKNSHACVEGAMHHDCPICFEYLFESRNDVSVLPCGHTIHEKCLKEM 483
Query: 665 VAHNKYTCPICSKTALDLTHHWEMLDQEI 751
H ++ CP+CSK+ D++ WE LD E+
Sbjct: 482 KEHCQFACPLCSKSVCDMSKAWERLDAEL 396
Score = 62.5 bits (130), Expect(2) = 1e-044
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +2 / -2
Query: 794 VLCNDCNKVSEVNFHVIGHKCSHCRSYNTR 883
+LCNDC VSEV FH+I HKC C+SYNTR
Sbjct: 356 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTR 267
>gb|BF619842.2|BF619842 HVSMEc0009G18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0009G18f, mRNA sequence
Length = 590
Score = 156 bits (335), Expect(2) = 3e-038
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = +2 / +1
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG M +YFC+ C F+DDD K QYHC C
Sbjct: 304 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMXKYFCEKCNFFDDDISKNQYHCDGC 483
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNHQCVENS 556
GICR GG +NFFHC KCG CYS +L+D+H CVE +
Sbjct: 484 GICRTGGMDNFFHCEKCGCCYSNVLKDSHHCVERA 588
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +1
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 136 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 315
Query: 299 VEK 307
+ +
Sbjct: 316 IPR 324
Score = 61.1 bits (127), Expect(2) = 1e-027
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +3
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 345 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 524
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 525 RKMRVLL 545
Score = 23.5 bits (45), Expect(2) = 3e-038
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 186 ARLRALHEEVQDTG 227
>gb|AV928554.1|AV928554 AV928554 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdn20 3', mRNA sequence
Length = 751
Score = 112 bits (240), Expect(2) = 1e-036
Identities = 39/76 (51%), Positives = 54/76 (71%)
Frame = +2 / -3
Query: 563 QNCPICYEYLFDSLQGTRVLNCGHTMHLTCFEEMVAHNKYTCPICSKTALDLTHHWEMLD 742
+ P+CYEYLFDS VL+CGHT+HL C EM H+ ++CP+CS++A D+T W+ LD
Sbjct: 740 KTAPVCYEYLFDSTMDISVLHCGHTIHLECLNEMRVHHHFSCPVCSRSACDMTDAWQKLD 561
Query: 743 QEIEATIMPLVYRYKI 790
QE+ AT MP Y+ K+
Sbjct: 560 QEVAATPMPEFYQKKM 513
Score = 61.6 bits (128), Expect(2) = 1e-036
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2 / -3
Query: 788 IWVLCNDCNKVSEVNFHVIGHKCSHCRSYNTRTT 889
+W+LCNDC S V FHV+ KC C SYNTR T
Sbjct: 512 VWILCNDCGATSSVRFHVLAQKCPGCSSYNTRET 411
>gb|CA008339.1|CA008339 HU10K10r HU Hordeum vulgare subsp. vulgare cDNA clone HU10K10
5-PRIME, mRNA sequence
Length = 532
Score = 150 bits (323), Expect(2) = 1e-036
Identities = 51/89 (57%), Positives = 63/89 (70%)
Frame = +2 / +1
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 265 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 444
Query: 452 GICRVGGKENFFHCVKCGSCYSVILRDNH 538
GICR GG +NFFHC KCG CYS +L+D+H
Sbjct: 445 GICRTGGMDNFFHCEKCGCCYSNVLKDSH 531
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +1
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 97 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 276
Query: 299 VEK 307
+ +
Sbjct: 277 IPR 285
Score = 61.1 bits (127), Expect(2) = 1e-027
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1 / +3
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 306 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 485
Query: 493 CEVWVLL 513
++ VLL
Sbjct: 486 RKMRVLL 506
Score = 23.5 bits (45), Expect(2) = 1e-036
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 147 ARLRALHEEVQDTG 188
>gb|AV920842.1|AV920842 AV920842 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15m20 3', mRNA sequence
Length = 712
Score = 58.3 bits (121), Expect(6) = 6e-036
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +2 / -1
Query: 536 HQCVENSMRQNCPICYEYLFDSLQGTRVLNCGHTMHLTCFE 658
H C E + NCPIC ++LF S R L CGH MH CF+
Sbjct: 541 HNCREKMLEMNCPICCDFLFTSSAAVRGLPCGHFMHSACFQ 419
Score = 47.3 bits (97), Expect(6) = 6e-036
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2 / -1
Query: 794 VLCNDCNKVSEVNFHVIGHKCSHCRSYNTRTTSRPA 901
+LCNDC + FH + HKC C SYNTR A
Sbjct: 283 ILCNDCGRKGLSRFHWLYHKCGACGSYNTRVIKTEA 176
Score = 41.4 bits (84), Expect(6) = 6e-036
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2 / -1
Query: 680 YTCPICSKTALDLTHHWEMLDQEIEATIMPLVYR 781
YTCPICSK+ D+T ++ MLD + A +P YR
Sbjct: 400 YTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYR 299
Score = 35.0 bits (70), Expect(6) = 6e-036
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2 / -1
Query: 365 GVNMGEYFCDICKFYDDD 418
G++M +Y C ICKF+DD+
Sbjct: 709 GLSMAKYHCSICKFFDDE 656
Score = 30.4 bits (60), Expect(6) = 6e-036
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2 / -1
Query: 479 NFFHCVKCGSCYSVILRDNH 538
+FFHC+KC C + L++++
Sbjct: 595 DFFHCMKCNCCLGMKLKEHN 536
Score = 29.0 bits (57), Expect(6) = 6e-036
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2 / -1
Query: 416 DTDKGQYHCIDCGICRVG 469
D ++ YHC C +CR+G
Sbjct: 664 DDERSVYHCPFCNLCRLG 611
>gb|AV935894.1|AV935894 AV935894 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6o11 3', mRNA sequence
Length = 699
Score = 60.2 bits (125), Expect(6) = 1e-035
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2 / -2
Query: 536 HQCVENSMRQNCPICYEYLFDSLQGTRVLNCGHTMHLTCFE 658
H+C E + NCPIC ++LF S R L CGH MH CF+
Sbjct: 488 HKCREKGLETNCPICCDFLFTSSAAVRALPCGHFMHSACFQ 366
Score = 48.7 bits (100), Expect(6) = 1e-035
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2 / -2
Query: 794 VLCNDCNKVSEVNFHVIGHKCSHCRSYNTR 883
+LCNDC + FH + HKC C SYNTR
Sbjct: 230 ILCNDCERKGRSQFHWLYHKCGSCGSYNTR 141
Score = 37.3 bits (75), Expect(6) = 1e-035
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2 / -2
Query: 680 YTCPICSKTALDLTHHWEMLDQEIEATIMPLVYR 781
YTCPIC K+ D+ ++ MLD + A +P YR
Sbjct: 347 YTCPICCKSLGDMAVYFGMLDALLAAEELPEEYR 246
Score = 37.3 bits (75), Expect(6) = 1e-035
Identities = 10/18 (55%), Positives = 17/18 (94%)
Frame = +2 / -2
Query: 365 GVNMGEYFCDICKFYDDD 418
G++M +Y+C+ICKF+DD+
Sbjct: 656 GLSMAKYYCNICKFFDDE 603
Score = 28.6 bits (56), Expect(6) = 1e-035
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2 / -2
Query: 479 NFFHCVKCGSCYSVILRDN 535
+FFHC+KC C + L ++
Sbjct: 542 DFFHCMKCNCCLGMKLTEH 486
Score = 28.1 bits (55), Expect(6) = 1e-035
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2 / -2
Query: 416 DTDKGQYHCIDCGICRVG 469
D ++ YHC C +CR+G
Sbjct: 611 DDERTVYHCPFCNLCRLG 558
>gb|BJ475980.1|BJ475980 BJ475980 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30o13 3', mRNA sequence
Length = 648
Score = 60.2 bits (125), Expect(6) = 7e-034
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2 / -2
Query: 536 HQCVENSMRQNCPICYEYLFDSLQGTRVLNCGHTMHLTCFE 658
H+C E + NCPIC ++LF S R L CGH MH CF+
Sbjct: 491 HKCREKGLETNCPICCDFLFTSSAAVRALPCGHFMHSACFQ 369
Score = 48.7 bits (100), Expect(6) = 7e-034
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2 / -2
Query: 794 VLCNDCNKVSEVNFHVIGHKCSHCRSYNTR 883
+LCNDC + FH + HKC C SYNTR
Sbjct: 233 ILCNDCERKGRSQFHWLYHKCGSCGSYNTR 144
Score = 37.3 bits (75), Expect(6) = 7e-034
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2 / -2
Query: 680 YTCPICSKTALDLTHHWEMLDQEIEATIMPLVYR 781
YTCPIC K+ D+ ++ MLD + A +P YR
Sbjct: 350 YTCPICCKSLGDMAVYFGMLDALLAAEELPEEYR 249
Score = 31.3 bits (62), Expect(6) = 7e-034
Identities = 8/13 (61%), Positives = 13/13 (100%)
Frame = +2 / -2
Query: 380 EYFCDICKFYDDD 418
+Y+C+ICKF+DD+
Sbjct: 644 KYYCNICKFFDDE 606
Score = 28.6 bits (56), Expect(6) = 7e-034
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2 / -2
Query: 479 NFFHCVKCGSCYSVILRDN 535
+FFHC+KC C + L ++
Sbjct: 545 DFFHCMKCNCCLGMKLTEH 489
Score = 28.1 bits (55), Expect(6) = 7e-034
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2 / -2
Query: 416 DTDKGQYHCIDCGICRVG 469
D ++ YHC C +CR+G
Sbjct: 614 DDERTVYHCPFCNLCRLG 561
>gb|AW983272.3|AW983272 HVSMEg0010A16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010A16f, mRNA sequence
Length = 583
Score = 133 bits (284), Expect = 3e-030
Identities = 50/55 (90%), Positives = 53/55 (96%)
Frame = +2 / +2
Query: 737 LDQEIEATIMPLVYRYKIWVLCNDCNKVSEVNFHVIGHKCSHCRSYNTRTTSRPA 901
LDQEIEATIMP VYRYK+WVLCNDCNKVSEV+FHVIGHKCSHC SYNTR+TSRPA
Sbjct: 2 LDQEIEATIMPPVYRYKVWVLCNDCNKVSEVDFHVIGHKCSHCNSYNTRSTSRPA 166
>gb|BQ135330.1|BQ135330 LP10034 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-34,
mRNA sequence
Length = 338
Score = 87.7 bits (185), Expect(2) = 4e-029
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = +2 / -1
Query: 617 VLNCGHTMHLTCFEEMVAHNKYTCPICSKTALDLTHHWEMLDQEIEATIMPLVYRYKI 790
VL+CGHT+HL C EM H+ ++CP+CS++A D+T W+ LDQE+ AT MP Y+ K+
Sbjct: 338 VLHCGHTIHLECLNEMRVHHHFSCPVCSRSACDMTDAWQKLDQEVAATPMPEFYQKKM 165
Score = 61.6 bits (128), Expect(2) = 4e-029
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2 / -1
Query: 788 IWVLCNDCNKVSEVNFHVIGHKCSHCRSYNTRTT 889
+W+LCNDC S V FHV+ KC C SYNTR T
Sbjct: 164 VWILCNDCGATSSVRFHVLAQKCPGCSSYNTRET 63
>gb|CA006612.1|CA006612 HU05D02r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D02
5-PRIME, mRNA sequence
Length = 521
Score = 124 bits (265), Expect(2) = 9e-029
Identities = 42/74 (56%), Positives = 51/74 (68%)
Frame = +2 / +2
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 299 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 478
Query: 452 GICRVGGKENFFHC 493
GICR GG +NFFHC
Sbjct: 479 GICRTGGMDNFFHC 520
Score = 83.1 bits (175), Expect(2) = 1e-026
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +2
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 131 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 310
Query: 299 VEK 307
+ +
Sbjct: 311 IPR 319
Score = 57.4 bits (119), Expect(2) = 1e-026
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +1 / +1
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWWQGKLLPL 492
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW G+ LPL
Sbjct: 340 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWWHGQFLPL 519
Score = 23.5 bits (45), Expect(2) = 9e-029
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 181 ARLRALHEEVQDTG 222
>gb|BG342949.2|BG342949 HVSMEg0001H04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001H04f, mRNA sequence
Length = 844
Score = 102 bits (217), Expect(3) = 1e-027
Identities = 35/64 (54%), Positives = 43/64 (67%)
Frame = +2 / +3
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 300 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 479
Query: 452 GICR 463
GICR
Sbjct: 480 GICR 491
Score = 35.9 bits (72), Expect(3) = 1e-027
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2 / +2
Query: 461 RVGGKENFFHCVKCGSCYS 517
+ GG E+FFHC G CYS
Sbjct: 593 KTGGMEHFFHCKNAGGCYS 649
Score = 23.5 bits (45), Expect(3) = 1e-027
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +2
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 182 ARLRALHEEVQDTG 223
>gb|AV923846.1|AV923846 AV923846 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m15 5', mRNA sequence
Length = 519
Score = 107 bits (229), Expect(2) = 7e-024
Identities = 37/67 (55%), Positives = 45/67 (67%)
Frame = +2 / +1
Query: 272 DRHTICRQDVEKVVCLLCETKQPVSQVCISCGVNMGEYFCDICKFYDDDTDKGQYHCIDC 451
DRH I R ++ KV+C LC +Q V + C CG MG+YFC+ C F+DDD K QYHC C
Sbjct: 319 DRHDIPRHEISKVICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGC 498
Query: 452 GICRVGG 472
GICR GG
Sbjct: 499 GICRTGG 519
Score = 83.1 bits (175), Expect(2) = 1e-023
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2 / +1
Query: 119 DAARDGEVDRRDVGKMKHGCEHYRRRCKIVAPCCNQVFPCRHCHNEATASGDRHTICRQD 298
+A + + D+G +HGCEHY RRC+I APCC +VF CRHCHN+A S + + R D
Sbjct: 151 EARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHD 330
Query: 299 VEK 307
+ +
Sbjct: 331 IPR 339
Score = 47.3 bits (97), Expect(2) = 1e-023
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1 / +3
Query: 313 LPTL*NKTAGVTSVHKLWSQYGRVLL*YMQIL***YRQRAVPLHRLWHMQGWW 471
L +L +T + +LW +G +LL* MQ+L* *Y + V L + H+Q WW
Sbjct: 360 LLSLQQRTGCAEELLRLWGMHGEILL*KMQLL*R*YLKEPVSLRWMRHLQNWW 518
Score = 23.5 bits (45), Expect(2) = 7e-024
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 169 ARVRALPAEVQDRG 210
AR+RAL EVQD G
Sbjct: 201 ARLRALHEEVQDTG 242
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 706,181,514
Number of Sequences: 312970
Number of extensions: 12113346
Number of successful extensions: 76685
Number of sequences better than 1.0e-020: 53
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 17761076825
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)