TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ763913.1|BQ763913 EBro03_SQ005_B22_R root, 3 week, wat... 171 3e-042
gb|CV054719.1|CV054719 BNEL112e5 Barley EST endosperm libra... 170 6e-042
gb|BE601861.1|BE601861 HVSMEh0099M19f Hordeum vulgare 5-45 ... 170 8e-042
gb|AL506323.1|AL506323 AL506323 Hordeum vulgare Barke devel... 169 1e-041
gb|AL509745.1|AL509745 AL509745 Hordeum vulgare Barke devel... 169 1e-041
gb|BF257863.2|BF257863 HVSMEf0014B05f Hordeum vulgare seedl... 169 1e-041
gb|BG301284.2|BG301284 HVSMEb0020H09f Hordeum vulgare seedl... 169 1e-041
gb|BG344056.2|BG344056 HVSMEg0007I06f Hordeum vulgare pre-a... 169 1e-041
gb|BG415007.2|BG415007 HVSMEk0004K11f Hordeum vulgare testa... 169 1e-041
gb|BQ460746.1|BQ460746 HA06A19r HA Hordeum vulgare subsp. v... 169 1e-041
gb|BQ470436.1|BQ470436 HX02P15r HX Hordeum vulgare subsp. v... 169 1e-041
gb|BQ470789.1|BQ470789 HX04A15r HX Hordeum vulgare subsp. v... 169 1e-041
gb|BQ665534.1|BQ665534 HX04A15u HX Hordeum vulgare subsp. v... 169 1e-041
gb|BM376551.2|BM376551 EBem05_SQ002_I19_R embryo, 14 DPA, n... 169 1e-041
gb|BM443218.2|BM443218 EBro02_SQ003_B18_R root, 3 week, hyd... 169 1e-041
gb|BQ754963.1|BQ754963 EBed02_SQ003_F05_R endosperm, 8 DPA,... 169 1e-041
gb|BQ768186.1|BQ768186 EBro08_SQ010_M23_R root, 3 week, dro... 169 1e-041
gb|BU983354.1|BU983354 HA29H02r HA Hordeum vulgare subsp. v... 169 1e-041
gb|BU986773.1|BU986773 HF12N18r HF Hordeum vulgare subsp. v... 169 1e-041
gb|BU995200.1|BU995200 HM09I11r HM Hordeum vulgare subsp. v... 169 1e-041
gb|CA022127.1|CA022127 HZ42D22r HZ Hordeum vulgare subsp. v... 169 1e-041
gb|CA028142.1|CA028142 HZ61C01r HZ Hordeum vulgare subsp. v... 169 1e-041
gb|CB881346.1|CB881346 HM09I11w HM Hordeum vulgare subsp. v... 169 1e-041
gb|CK122930.1|CK122930 BES1824101e16 BES1824 Hordeum vulgar... 169 1e-041
gb|BM375074.2|BM375074 EBem06_SQ002_E09_R embryo, 21 DPA, n... 166 7e-041
gb|CA027679.1|CA027679 HZ59K23r HZ Hordeum vulgare subsp. v... 166 1e-040
gb|BQ757114.1|BQ757114 EBem10_SQ002_O01_R embryo, 2 Day ger... 166 3e-040
gb|BM368232.2|BM368232 EBed01_SQ002_I20_R endosperm, 6 DPA,... 155 1e-037
gb|BM444749.1|BM444749 EBem09_SQ006_F19_R embryo, 1 Day ger... 128 2e-029
gb|BG344830.2|BG344830 HVSMEg0016E15f Hordeum vulgare pre-a... 111 3e-024
gb|BM444395.1|BM444395 EBem09_SQ005_B04_R embryo, 1 Day ger... 92 3e-023
gb|AJ462715.1|AJ462715 AJ462715 S00002 Hordeum vulgare subs... 101 1e-021
>gb|BQ763913.1|BQ763913 EBro03_SQ005_B22_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_B22 5', mRNA sequence
Length = 500
Score = 171 bits (368), Expect = 3e-042
Identities = 70/77 (90%), Positives = 73/77 (94%)
Frame = -3 / +2
Query: 504 AAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLI 325
A+ KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLI
Sbjct: 17 ASAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLI 196
Query: 324 EKLLNYNTLEKTETS*A 274
EKLLNYNTLEKTETS*+
Sbjct: 197 EKLLNYNTLEKTETS*S 247
Score = 101 bits (216), Expect = 3e-021
Identities = 48/60 (80%), Positives = 50/60 (83%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIFTAA 505
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF A
Sbjct: 195 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIFADA 16
>gb|CV054719.1|CV054719 BNEL112e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112e5 5' similar to DNA-directed
RNA polymerase II, putative, mRNA sequence
Length = 525
Score = 170 bits (366), Expect = 6e-042
Identities = 70/80 (87%), Positives = 72/80 (90%)
Frame = -3 / +1
Query: 513 ESAAAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 334
E KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHV
Sbjct: 4 EDGGGSKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHV 183
Query: 333 DLIEKLLNYNTLEKTETS*A 274
DLIEKLLNYNTLEKTETS*+
Sbjct: 184 DLIEKLLNYNTLEKTETS*S 243
Score = 100 bits (214), Expect = 5e-021
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -2
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 191 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 21
>gb|BE601861.1|BE601861 HVSMEh0099M19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099M19f, mRNA sequence
Length = 524
Score = 170 bits (365), Expect = 8e-042
Identities = 70/77 (90%), Positives = 72/77 (93%)
Frame = -3 / +1
Query: 504 AAVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLI 325
A KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLI
Sbjct: 13 AGSKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLI 192
Query: 324 EKLLNYNTLEKTETS*A 274
EKLLNYNTLEKTETS*+
Sbjct: 193 EKLLNYNTLEKTETS*S 243
Score = 100 bits (212), Expect = 1e-020
Identities = 47/60 (78%), Positives = 49/60 (81%)
Frame = +2 / -1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIFTAA 505
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPIT PQVKQRTG+IIF A
Sbjct: 191 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITFPQVKQRTGMIIFDPA 12
>gb|AL506323.1|AL506323 AL506323 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02L23T 5',
mRNA sequence
Length = 547
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +1
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 76 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 255
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 256 LNYNTLEKTETS*S 297
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 245 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 75
>gb|AL509745.1|AL509745 AL509745 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02L23u 3',
mRNA sequence
Length = 563
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / -2
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 514 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 335
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 334 LNYNTLEKTETS*S 293
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / +3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 345 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 515
>gb|BF257863.2|BF257863 HVSMEf0014B05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014B05f, mRNA sequence
Length = 571
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +1
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 88 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 267
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 268 LNYNTLEKTETS*S 309
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 257 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 87
>gb|BG301284.2|BG301284 HVSMEb0020H09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020H09f, mRNA sequence
Length = 573
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +3
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 48 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 227
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 228 LNYNTLEKTETS*S 269
Score = 100 bits (214), Expect = 5e-021
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 217 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 47
>gb|BG344056.2|BG344056 HVSMEg0007I06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007I06f, mRNA sequence
Length = 524
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +2
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 50 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 229
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 230 LNYNTLEKTETS*S 271
Score = 100 bits (214), Expect = 5e-021
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 219 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 49
>gb|BG415007.2|BG415007 HVSMEk0004K11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004K11f, mRNA sequence
Length = 630
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +1
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 85 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 264
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 265 LNYNTLEKTETS*S 306
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / -2
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 254 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 84
>gb|BQ460746.1|BQ460746 HA06A19r HA Hordeum vulgare subsp. vulgare cDNA clone HA06A19
5-PRIME, mRNA sequence
Length = 537
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +1
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 106 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 285
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 286 LNYNTLEKTETS*S 327
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / -2
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 275 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 105
>gb|BQ470436.1|BQ470436 HX02P15r HX Hordeum vulgare subsp. vulgare cDNA clone HX02P15
5-PRIME, mRNA sequence
Length = 598
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +1
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 136 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 315
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 316 LNYNTLEKTETS*S 357
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 305 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 135
>gb|BQ470789.1|BQ470789 HX04A15r HX Hordeum vulgare subsp. vulgare cDNA clone HX04A15
5-PRIME, mRNA sequence
Length = 530
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +1
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 64 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 243
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 244 LNYNTLEKTETS*S 285
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / -1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 233 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 63
>gb|BQ665534.1|BQ665534 HX04A15u HX Hordeum vulgare subsp. vulgare cDNA clone HX04A15
3-PRIME, mRNA sequence
Length = 473
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / -1
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 467 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 288
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 287 LNYNTLEKTETS*S 246
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / +1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 298 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 468
>gb|BM376551.2|BM376551 EBem05_SQ002_I19_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_I19 5', mRNA sequence
Length = 522
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +3
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 12 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 191
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 192 LNYNTLEKTETS*S 233
Score = 100 bits (214), Expect = 5e-021
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 181 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 11
>gb|BM443218.2|BM443218 EBro02_SQ003_B18_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_B18 5', mRNA sequence
Length = 458
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +1
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 49 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 228
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 229 LNYNTLEKTETS*S 270
Score = 100 bits (214), Expect(2) = 6e-022
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 218 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 48
Score = 23.5 bits (45), Expect(2) = 6e-022
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2 / -1
Query: 158 VLEKHVHTHNPFLLIEK 208
++E+H HT++P+ ++K
Sbjct: 452 IVERHGHTNSPWRFMDK 402
>gb|BQ754963.1|BQ754963 EBed02_SQ003_F05_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ003_F05 5', mRNA sequence
Length = 533
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +1
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 43 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 222
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 223 LNYNTLEKTETS*S 264
Score = 100 bits (214), Expect = 5e-021
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 212 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 42
>gb|BQ768186.1|BQ768186 EBro08_SQ010_M23_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_M23 5', mRNA sequence
Length = 631
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +1
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 70 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 249
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 250 LNYNTLEKTETS*S 291
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 239 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 69
>gb|BU983354.1|BU983354 HA29H02r HA Hordeum vulgare subsp. vulgare cDNA clone HA29H02
5-PRIME, mRNA sequence
Length = 531
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +2
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 92 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 271
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 272 LNYNTLEKTETS*S 313
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / -1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 261 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 91
>gb|BU986773.1|BU986773 HF12N18r HF Hordeum vulgare subsp. vulgare cDNA clone HF12N18
5-PRIME, mRNA sequence
Length = 540
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +3
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 45 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 224
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 225 LNYNTLEKTETS*S 266
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 214 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 44
>gb|BU995200.1|BU995200 HM09I11r HM Hordeum vulgare subsp. vulgare cDNA clone HM09I11
5-PRIME, mRNA sequence
Length = 558
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +2
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 56 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 235
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 236 LNYNTLEKTETS*S 277
Score = 100 bits (214), Expect = 5e-021
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 225 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 55
>gb|CA022127.1|CA022127 HZ42D22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42D22
5-PRIME, mRNA sequence
Length = 502
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +2
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 14 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 193
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 194 LNYNTLEKTETS*S 235
Score = 100 bits (214), Expect = 5e-021
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -2
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 183 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 13
>gb|CA028142.1|CA028142 HZ61C01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C01
5-PRIME, mRNA sequence
Length = 506
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +2
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 50 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 229
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 230 LNYNTLEKTETS*S 271
Score = 100 bits (214), Expect = 5e-021
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 219 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 49
>gb|CB881346.1|CB881346 HM09I11w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I11
3-PRIME, mRNA sequence
Length = 558
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / -3
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 505 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 326
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 325 LNYNTLEKTETS*S 284
Score = 100 bits (214), Expect = 5e-021
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / +3
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 336 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 506
>gb|CK122930.1|CK122930 BES1824101e16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E161 5-PRIME, mRNA sequence
Length = 724
Score = 169 bits (363), Expect = 1e-041
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -3 / +2
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 110 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 289
Query: 315 LNYNTLEKTETS*A 274
LNYNTLEKTETS*+
Sbjct: 290 LNYNTLEKTETS*S 331
Score = 100 bits (213), Expect = 7e-021
Identities = 47/57 (82%), Positives = 48/57 (84%)
Frame = +2 / -2
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
MRST VMSIR QQ R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 279 MRSTWVMSIRRQQYRTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 109
>gb|BM375074.2|BM375074 EBem06_SQ002_E09_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_E09 5', mRNA sequence
Length = 494
Score = 166 bits (358), Expect = 7e-041
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 492 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 313
MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 2 MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 181
Query: 312 NYNTLEKTETS*A 274
NYNTLEKTETS*+
Sbjct: 182 NYNTLEKTETS*S 220
>gb|CA027679.1|CA027679 HZ59K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59K23
5-PRIME, mRNA sequence
Length = 265
Score = 166 bits (357), Expect = 1e-040
Identities = 67/71 (94%), Positives = 68/71 (95%)
Frame = -3 / +3
Query: 495 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 51 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 230
Query: 315 LNYNTLEKTET 283
LNYNTLEKTET
Sbjct: 231 LNYNTLEKTET 263
Score = 100 bits (214), Expect = 5e-021
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +2 / -1
Query: 326 MRSTCVMSIRLQQ*RNNSKASRASPSE*SAWRRSRYRSHLFPITLPQVKQRTGIIIF 496
+RST VMSIR QQ*R KASRASPS *SAWRRSR SHLFPITLPQVKQRTG+IIF
Sbjct: 220 IRSTWVMSIRRQQ*RTKPKASRASPSV*SAWRRSR*WSHLFPITLPQVKQRTGMIIF 50
>gb|BQ757114.1|BQ757114 EBem10_SQ002_O01_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_O01 5', mRNA sequence
Length = 349
Score = 166 bits (356), Expect(2) = 3e-040
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = -3 / +2
Query: 486 IPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNY 307
IPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL LFRYCCRRMLMTHVDLIEKLLNY
Sbjct: 2 IPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLFRYCCRRMLMTHVDLIEKLLNY 181
Query: 306 NTLEKTETS*A 274
NTLEKTETS*+
Sbjct: 182 NTLEKTETS*S 214
Score = 18.5 bits (34), Expect(2) = 3e-040
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = -3 / +2
Query: 294 KTETS*ASTSCSKNTTVWQYHRA*VVCCL 208
+T S* + C + Y +VCCL
Sbjct: 200 ETS*S*LNPCCLETLVPLYYFSRWMVCCL 286
>gb|BM368232.2|BM368232 EBed01_SQ002_I20_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_I20 5', mRNA sequence
Length = 545
Score = 155 bits (334), Expect = 1e-037
Identities = 63/68 (92%), Positives = 65/68 (95%)
Frame = -3 / +1
Query: 477 RCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTL 298
RCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTL
Sbjct: 1 RCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTL 180
Query: 297 EKTETS*A 274
EKTETS*+
Sbjct: 181 EKTETS*S 204
>gb|BM444749.1|BM444749 EBem09_SQ006_F19_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_F19 5', mRNA sequence
Length = 518
Score = 128 bits (275), Expect = 2e-029
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = -3 / +3
Query: 447 NKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS*A 274
NKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLEKTETS*+
Sbjct: 3 NKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKTETS*S 176
>gb|BG344830.2|BG344830 HVSMEg0016E15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016E15f, mRNA sequence
Length = 427
Score = 111 bits (238), Expect = 3e-024
Identities = 48/55 (87%), Positives = 50/55 (90%)
Frame = -3 / +2
Query: 438 DLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS*A 274
D YLDLLQADY+ GDAL AL L RYCCRRMLMTHVDLIEKLLNYNTLEKTETS*+
Sbjct: 2 DHYLDLLQADYTXGDALVALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKTETS*S 166
>gb|BM444395.1|BM444395 EBem09_SQ005_B04_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_B04 5', mRNA sequence
Length = 533
Score = 91.8 bits (194), Expect(2) = 3e-023
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = -3 / +3
Query: 447 NKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDL 328
NKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDL
Sbjct: 3 NKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDL 122
Score = 35.9 bits (72), Expect(2) = 3e-023
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -3 / +1
Query: 321 KLLNYNTLEKTETS*A 274
KLLNYNTLEKTETS*+
Sbjct: 130 KLLNYNTLEKTETS*S 177
>gb|AJ462715.1|AJ462715 AJ462715 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200073B09F1, mRNA sequence
Length = 240
Score = 101 bits (216), Expect(2) = 1e-021
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = -3 / +2
Query: 411 DYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS*A 274
DY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLEKTETS*+
Sbjct: 8 DYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKTETS*S 145
Score = 19.4 bits (36), Expect(2) = 1e-021
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -2 / +2
Query: 157 FSCDSACCHLCNDVG 113
FS CC LC +G
Sbjct: 191 FSRWMVCCFLCQCLG 235
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 287,232,686
Number of Sequences: 312970
Number of extensions: 4566066
Number of successful extensions: 74122
Number of sequences better than 1.0e-020: 37
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6362506350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)