TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506323.1|AL506323 AL506323 Hordeum vulgare Barke devel... 168 2e-041
gb|AL509745.1|AL509745 AL509745 Hordeum vulgare Barke devel... 168 2e-041
gb|BE601861.1|BE601861 HVSMEh0099M19f Hordeum vulgare 5-45 ... 168 2e-041
gb|BF257863.2|BF257863 HVSMEf0014B05f Hordeum vulgare seedl... 168 2e-041
gb|BG301284.2|BG301284 HVSMEb0020H09f Hordeum vulgare seedl... 168 2e-041
gb|BG344056.2|BG344056 HVSMEg0007I06f Hordeum vulgare pre-a... 168 2e-041
gb|BG415007.2|BG415007 HVSMEk0004K11f Hordeum vulgare testa... 168 2e-041
gb|BQ460746.1|BQ460746 HA06A19r HA Hordeum vulgare subsp. v... 168 2e-041
gb|BQ470436.1|BQ470436 HX02P15r HX Hordeum vulgare subsp. v... 168 2e-041
gb|BQ470789.1|BQ470789 HX04A15r HX Hordeum vulgare subsp. v... 168 2e-041
gb|BQ665534.1|BQ665534 HX04A15u HX Hordeum vulgare subsp. v... 168 2e-041
gb|BM376551.2|BM376551 EBem05_SQ002_I19_R embryo, 14 DPA, n... 168 2e-041
gb|BM443218.2|BM443218 EBro02_SQ003_B18_R root, 3 week, hyd... 168 2e-041
gb|BQ754963.1|BQ754963 EBed02_SQ003_F05_R endosperm, 8 DPA,... 168 2e-041
gb|BQ763913.1|BQ763913 EBro03_SQ005_B22_R root, 3 week, wat... 168 2e-041
gb|BQ768186.1|BQ768186 EBro08_SQ010_M23_R root, 3 week, dro... 168 2e-041
gb|BU983354.1|BU983354 HA29H02r HA Hordeum vulgare subsp. v... 168 2e-041
gb|BU986773.1|BU986773 HF12N18r HF Hordeum vulgare subsp. v... 168 2e-041
gb|BU995200.1|BU995200 HM09I11r HM Hordeum vulgare subsp. v... 168 2e-041
gb|CA022127.1|CA022127 HZ42D22r HZ Hordeum vulgare subsp. v... 168 2e-041
gb|CA028142.1|CA028142 HZ61C01r HZ Hordeum vulgare subsp. v... 168 2e-041
gb|CB881346.1|CB881346 HM09I11w HM Hordeum vulgare subsp. v... 168 2e-041
gb|CV054719.1|CV054719 BNEL112e5 Barley EST endosperm libra... 168 2e-041
gb|CK122930.1|CK122930 BES1824101e16 BES1824 Hordeum vulgar... 168 2e-041
gb|BM375074.2|BM375074 EBem06_SQ002_E09_R embryo, 21 DPA, n... 166 1e-040
gb|CA027679.1|CA027679 HZ59K23r HZ Hordeum vulgare subsp. v... 166 1e-040
gb|BQ757114.1|BQ757114 EBem10_SQ002_O01_R embryo, 2 Day ger... 165 2e-040
gb|BM368232.2|BM368232 EBed01_SQ002_I20_R endosperm, 6 DPA,... 155 2e-037
gb|BM444749.1|BM444749 EBem09_SQ006_F19_R embryo, 1 Day ger... 128 3e-029
gb|BG344830.2|BG344830 HVSMEg0016E15f Hordeum vulgare pre-a... 111 3e-024
gb|BM444395.1|BM444395 EBem09_SQ005_B04_R embryo, 1 Day ger... 92 4e-023
gb|AJ462715.1|AJ462715 AJ462715 S00002 Hordeum vulgare subs... 101 4e-021
>gb|AL506323.1|AL506323 AL506323 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02L23T 5',
mRNA sequence
Length = 547
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 76 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 255
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 256 LNYNTLEKTETS* 294
>gb|AL509745.1|AL509745 AL509745 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02L23u 3',
mRNA sequence
Length = 563
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / -2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 514 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 335
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 334 LNYNTLEKTETS* 296
>gb|BE601861.1|BE601861 HVSMEh0099M19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099M19f, mRNA sequence
Length = 524
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 22 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 201
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 202 LNYNTLEKTETS* 240
>gb|BF257863.2|BF257863 HVSMEf0014B05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014B05f, mRNA sequence
Length = 571
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 88 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 267
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 268 LNYNTLEKTETS* 306
>gb|BG301284.2|BG301284 HVSMEb0020H09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020H09f, mRNA sequence
Length = 573
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 48 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 227
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 228 LNYNTLEKTETS* 266
Score = 71.2 bits (149), Expect(2) = 9e-021
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +1 / -2
Query: 295 TCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIP 414
TCL LLQ VVVEQLL++VNMGHEH+ AAVA Q Q IQSIP
Sbjct: 263 TCLRLLQGVVVEQLLDKVNMGHEHTAAAVANQAQGIQSIP 144
Score = 48.3 bits (99), Expect(2) = 9e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -3
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 103 HLFPITLPQVKQRTGMIIF 47
>gb|BG344056.2|BG344056 HVSMEg0007I06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007I06f, mRNA sequence
Length = 524
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 50 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 229
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 230 LNYNTLEKTETS* 268
Score = 71.2 bits (149), Expect(2) = 9e-021
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +1 / -2
Query: 295 TCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIP 414
TCL LLQ VVVEQLL++VNMGHEH+ AAVA Q Q IQSIP
Sbjct: 265 TCLRLLQGVVVEQLLDKVNMGHEHTAAAVANQAQGIQSIP 146
Score = 48.3 bits (99), Expect(2) = 9e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -3
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 105 HLFPITLPQVKQRTGMIIF 49
>gb|BG415007.2|BG415007 HVSMEk0004K11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004K11f, mRNA sequence
Length = 630
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 85 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 264
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 265 LNYNTLEKTETS* 303
>gb|BQ460746.1|BQ460746 HA06A19r HA Hordeum vulgare subsp. vulgare cDNA clone HA06A19
5-PRIME, mRNA sequence
Length = 537
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 106 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 285
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 286 LNYNTLEKTETS* 324
>gb|BQ470436.1|BQ470436 HX02P15r HX Hordeum vulgare subsp. vulgare cDNA clone HX02P15
5-PRIME, mRNA sequence
Length = 598
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 136 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 315
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 316 LNYNTLEKTETS* 354
>gb|BQ470789.1|BQ470789 HX04A15r HX Hordeum vulgare subsp. vulgare cDNA clone HX04A15
5-PRIME, mRNA sequence
Length = 530
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 64 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 243
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 244 LNYNTLEKTETS* 282
>gb|BQ665534.1|BQ665534 HX04A15u HX Hordeum vulgare subsp. vulgare cDNA clone HX04A15
3-PRIME, mRNA sequence
Length = 473
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / -1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 467 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 288
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 287 LNYNTLEKTETS* 249
>gb|BM376551.2|BM376551 EBem05_SQ002_I19_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_I19 5', mRNA sequence
Length = 522
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 12 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 191
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 192 LNYNTLEKTETS* 230
Score = 71.6 bits (150), Expect(2) = 7e-021
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +3 / -1
Query: 288 SLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHP 413
+ NLS SSP CCS*ATS+*GQHGS*A+ SSS P HPEHP
Sbjct: 234 NFNLSPSSPACCS*ATSR*GQHGS*AYGGSSSEPSPRHPEHP 109
Score = 48.3 bits (99), Expect(2) = 7e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -3
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 67 HLFPITLPQVKQRTGMIIF 11
>gb|BM443218.2|BM443218 EBro02_SQ003_B18_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_B18 5', mRNA sequence
Length = 458
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 49 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 228
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 229 LNYNTLEKTETS* 267
Score = 71.6 bits (150), Expect(2) = 7e-021
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +3 / -2
Query: 288 SLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHP 413
+ NLS SSP CCS*ATS+*GQHGS*A+ SSS P HPEHP
Sbjct: 271 NFNLSPSSPACCS*ATSR*GQHGS*AYGGSSSEPSPRHPEHP 146
Score = 48.3 bits (99), Expect(2) = 7e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -1
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 104 HLFPITLPQVKQRTGMIIF 48
>gb|BQ754963.1|BQ754963 EBed02_SQ003_F05_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ003_F05 5', mRNA sequence
Length = 533
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 43 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 222
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 223 LNYNTLEKTETS* 261
Score = 71.6 bits (150), Expect(2) = 7e-021
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +3 / -2
Query: 288 SLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHP 413
+ NLS SSP CCS*ATS+*GQHGS*A+ SSS P HPEHP
Sbjct: 265 NFNLSPSSPACCS*ATSR*GQHGS*AYGGSSSEPSPRHPEHP 140
Score = 48.3 bits (99), Expect(2) = 7e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -1
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 98 HLFPITLPQVKQRTGMIIF 42
>gb|BQ763913.1|BQ763913 EBro03_SQ005_B22_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_B22 5', mRNA sequence
Length = 500
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 26 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 205
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 206 LNYNTLEKTETS* 244
Score = 71.6 bits (150), Expect(2) = 7e-021
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +3 / -1
Query: 288 SLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHP 413
+ NLS SSP CCS*ATS+*GQHGS*A+ SSS P HPEHP
Sbjct: 248 NFNLSPSSPACCS*ATSR*GQHGS*AYGGSSSEPSPRHPEHP 123
Score = 48.3 bits (99), Expect(2) = 7e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -3
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 81 HLFPITLPQVKQRTGMIIF 25
>gb|BQ768186.1|BQ768186 EBro08_SQ010_M23_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_M23 5', mRNA sequence
Length = 631
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 70 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 249
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 250 LNYNTLEKTETS* 288
>gb|BU983354.1|BU983354 HA29H02r HA Hordeum vulgare subsp. vulgare cDNA clone HA29H02
5-PRIME, mRNA sequence
Length = 531
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 92 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 271
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 272 LNYNTLEKTETS* 310
>gb|BU986773.1|BU986773 HF12N18r HF Hordeum vulgare subsp. vulgare cDNA clone HF12N18
5-PRIME, mRNA sequence
Length = 540
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 45 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 224
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 225 LNYNTLEKTETS* 263
>gb|BU995200.1|BU995200 HM09I11r HM Hordeum vulgare subsp. vulgare cDNA clone HM09I11
5-PRIME, mRNA sequence
Length = 558
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 56 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 235
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 236 LNYNTLEKTETS* 274
Score = 71.6 bits (150), Expect(2) = 7e-021
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +3 / -2
Query: 288 SLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHP 413
+ NLS SSP CCS*ATS+*GQHGS*A+ SSS P HPEHP
Sbjct: 278 NFNLSPSSPACCS*ATSR*GQHGS*AYGGSSSEPSPRHPEHP 153
Score = 48.3 bits (99), Expect(2) = 7e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -1
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 111 HLFPITLPQVKQRTGMIIF 55
>gb|CA022127.1|CA022127 HZ42D22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42D22
5-PRIME, mRNA sequence
Length = 502
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 14 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 193
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 194 LNYNTLEKTETS* 232
Score = 71.6 bits (150), Expect(2) = 7e-021
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +3 / -3
Query: 288 SLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHP 413
+ NLS SSP CCS*ATS+*GQHGS*A+ SSS P HPEHP
Sbjct: 236 NFNLSPSSPACCS*ATSR*GQHGS*AYGGSSSEPSPRHPEHP 111
Score = 48.3 bits (99), Expect(2) = 7e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -2
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 69 HLFPITLPQVKQRTGMIIF 13
>gb|CA028142.1|CA028142 HZ61C01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C01
5-PRIME, mRNA sequence
Length = 506
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 50 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 229
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 230 LNYNTLEKTETS* 268
Score = 71.6 bits (150), Expect(2) = 7e-021
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +3 / -1
Query: 288 SLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHP 413
+ NLS SSP CCS*ATS+*GQHGS*A+ SSS P HPEHP
Sbjct: 272 NFNLSPSSPACCS*ATSR*GQHGS*AYGGSSSEPSPRHPEHP 147
Score = 48.3 bits (99), Expect(2) = 7e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -3
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 105 HLFPITLPQVKQRTGMIIF 49
>gb|CB881346.1|CB881346 HM09I11w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I11
3-PRIME, mRNA sequence
Length = 558
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / -3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 505 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 326
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 325 LNYNTLEKTETS* 287
Score = 71.6 bits (150), Expect(2) = 7e-021
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +3 / +1
Query: 288 SLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHP 413
+ NLS SSP CCS*ATS+*GQHGS*A+ SSS P HPEHP
Sbjct: 283 NFNLSPSSPACCS*ATSR*GQHGS*AYGGSSSEPSPRHPEHP 408
Score = 48.3 bits (99), Expect(2) = 7e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / +3
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 450 HLFPITLPQVKQRTGMIIF 506
>gb|CV054719.1|CV054719 BNEL112e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112e5 5' similar to DNA-directed
RNA polymerase II, putative, mRNA sequence
Length = 525
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 22 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 201
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 202 LNYNTLEKTETS* 240
Score = 71.2 bits (149), Expect(2) = 9e-021
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +1 / -1
Query: 295 TCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIP 414
TCL LLQ VVVEQLL++VNMGHEH+ AAVA Q Q IQSIP
Sbjct: 237 TCLRLLQGVVVEQLLDKVNMGHEHTAAAVANQAQGIQSIP 118
Score = 48.3 bits (99), Expect(2) = 9e-021
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -2
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 77 HLFPITLPQVKQRTGMIIF 21
>gb|CK122930.1|CK122930 BES1824101e16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E161 5-PRIME, mRNA sequence
Length = 724
Score = 168 bits (362), Expect = 2e-041
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 110 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 289
Query: 330 LNYNTLEKTETS* 292
LNYNTLEKTETS*
Sbjct: 290 LNYNTLEKTETS* 328
>gb|BM375074.2|BM375074 EBem06_SQ002_E09_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_E09 5', mRNA sequence
Length = 494
Score = 166 bits (357), Expect = 1e-040
Identities = 68/72 (94%), Positives = 69/72 (95%)
Frame = -3 / +2
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 2 MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 181
Query: 327 NYNTLEKTETS* 292
NYNTLEKTETS*
Sbjct: 182 NYNTLEKTETS* 217
>gb|CA027679.1|CA027679 HZ59K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59K23
5-PRIME, mRNA sequence
Length = 265
Score = 166 bits (357), Expect = 1e-040
Identities = 67/71 (94%), Positives = 68/71 (95%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 51 KMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 230
Query: 330 LNYNTLEKTET 298
LNYNTLEKTET
Sbjct: 231 LNYNTLEKTET 263
>gb|BQ757114.1|BQ757114 EBem10_SQ002_O01_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_O01 5', mRNA sequence
Length = 349
Score = 165 bits (355), Expect = 2e-040
Identities = 67/70 (95%), Positives = 68/70 (97%)
Frame = -3 / +2
Query: 501 IPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNY 322
IPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL LFRYCCRRMLMTHVDLIEKLLNY
Sbjct: 2 IPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLFRYCCRRMLMTHVDLIEKLLNY 181
Query: 321 NTLEKTETS* 292
NTLEKTETS*
Sbjct: 182 NTLEKTETS* 211
>gb|BM368232.2|BM368232 EBed01_SQ002_I20_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_I20 5', mRNA sequence
Length = 545
Score = 155 bits (333), Expect = 2e-037
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = -3 / +1
Query: 492 RCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTL 313
RCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTL
Sbjct: 1 RCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTL 180
Query: 312 EKTETS* 292
EKTETS*
Sbjct: 181 EKTETS* 201
>gb|BM444749.1|BM444749 EBem09_SQ006_F19_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_F19 5', mRNA sequence
Length = 518
Score = 128 bits (274), Expect = 3e-029
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = -3 / +3
Query: 462 NKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
NKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLEKTETS*
Sbjct: 3 NKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 173
>gb|BG344830.2|BG344830 HVSMEg0016E15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016E15f, mRNA sequence
Length = 427
Score = 111 bits (237), Expect = 3e-024
Identities = 48/54 (88%), Positives = 49/54 (90%)
Frame = -3 / +2
Query: 453 DLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
D YLDLLQADY+ GDAL AL L RYCCRRMLMTHVDLIEKLLNYNTLEKTETS*
Sbjct: 2 DHYLDLLQADYTXGDALVALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 163
>gb|BM444395.1|BM444395 EBem09_SQ005_B04_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_B04 5', mRNA sequence
Length = 533
Score = 91.8 bits (194), Expect(2) = 4e-023
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = -3 / +3
Query: 462 NKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDL 343
NKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDL
Sbjct: 3 NKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDL 122
Score = 35.4 bits (71), Expect(2) = 4e-023
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 336 KLLNYNTLEKTETS* 292
KLLNYNTLEKTETS*
Sbjct: 130 KLLNYNTLEKTETS* 174
>gb|AJ462715.1|AJ462715 AJ462715 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200073B09F1, mRNA sequence
Length = 240
Score = 101 bits (215), Expect = 4e-021
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = -3 / +2
Query: 426 DYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
DY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLEKTETS*
Sbjct: 8 DYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 142
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 243,160,738
Number of Sequences: 312970
Number of extensions: 3017470
Number of successful extensions: 39524
Number of sequences better than 1.0e-020: 37
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6404923059
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)