TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437739.2.1
(574 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU973151.1|BU973151 HB23O18r BC Hordeum vulgare subsp. v... 211 2e-054
gb|CA015249.1|CA015249 HT13L19r HT Hordeum vulgare subsp. v... 211 2e-054
gb|AF102868.1| Hordeum vulgare subsp. vulgare beta-D-glucan... 211 2e-054
gb|AV909243.1|AV909243 AV909243 K. Sato unpublished cDNA li... 203 8e-052
gb|AV911128.1|AV911128 AV911128 K. Sato unpublished cDNA li... 203 8e-052
gb|BF627275.3|BF627275 HVSMEb0004G19f Hordeum vulgare seedl... 201 3e-051
gb|AV918661.1|AV918661 AV918661 K. Sato unpublished cDNA li... 201 3e-051
gb|AV919570.1|AV919570 AV919570 K. Sato unpublished cDNA li... 201 3e-051
gb|AV920100.1|AV920100 AV920100 K. Sato unpublished cDNA li... 201 3e-051
gb|AV930613.1|AV930613 AV930613 K. Sato unpublished cDNA li... 201 3e-051
gb|BQ657885.1|BQ657885 HA06J20u HA Hordeum vulgare subsp. v... 201 3e-051
gb|BQ662134.1|BQ662134 HR01L02u HR Hordeum vulgare subsp. v... 201 3e-051
gb|BQ663930.1|BQ663930 HU04K15u HU Hordeum vulgare subsp. v... 201 3e-051
gb|BM374002.2|BM374002 EBma03_SQ003_F17_R maternal, 8 DPA, ... 201 3e-051
gb|BU983489.1|BU983489 HA29O13r HA Hordeum vulgare subsp. v... 201 3e-051
gb|BU997464.1|BU997464 HI08B05r HI Hordeum vulgare subsp. v... 201 3e-051
gb|BJ467252.1|BJ467252 BJ467252 K. Sato unpublished cDNA li... 201 3e-051
gb|CB858339.1|CB858339 HI06K15w HI Hordeum vulgare subsp. v... 201 3e-051
gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydro... 201 3e-051
gb|BU976239.1|BU976239 HA03G04u HA Hordeum vulgare subsp. v... 198 2e-050
gb|BU977332.1|BU977332 HA11D20u HA Hordeum vulgare subsp. v... 197 5e-050
gb|BQ468807.1|BQ468807 HM02G11r HM Hordeum vulgare subsp. v... 195 1e-049
gb|BQ661201.1|BQ661201 HM02G11u HM Hordeum vulgare subsp. v... 195 1e-049
gb|CB881387.1|CB881387 HM09K13w HM Hordeum vulgare subsp. v... 195 1e-049
gb|AV833400.1|AV833400 AV833400 K. Sato unpublished cDNA li... 195 2e-049
gb|BU995937.1|BU995937 HM11N11r HM Hordeum vulgare subsp. v... 193 7e-049
gb|CB882092.1|CB882092 HM11N11w HM Hordeum vulgare subsp. v... 193 7e-049
gb|BM098018.2|BM098018 EBpi03_SQ002_F03_R pistil, 4 DPA, no... 187 2e-048
gb|AL502756.1|AL502756 AL502756 Hordeum vulgare Barke roots... 185 2e-047
gb|AV913362.1|AV913362 AV913362 K. Sato unpublished cDNA li... 104 4e-046
gb|BI956426.1|BI956426 HVSMEn0003E13f Hordeum vulgare rachi... 181 3e-045
gb|AL510704.1|AL510704 AL510704 Hordeum vulgare Barke devel... 173 8e-043
gb|BM101478.2|BM101478 EBpi01_SQ003_P14_R pistil, 1 DPA, no... 167 3e-041
gb|BM376573.1|BM376573 EBem05_SQ002_J19_R embryo, 14 DPA, n... 160 4e-039
gb|CA000004.1|CA000004 HS16F17u HS Hordeum vulgare subsp. v... 154 5e-037
gb|CA016117.1|CA016117 HV10I20u HV Hordeum vulgare subsp. v... 146 8e-035
gb|CA006048.1|CA006048 HU05G22u HU Hordeum vulgare subsp. v... 121 9e-033
gb|BU999923.1|BU999923 HS16P05u HS Hordeum vulgare subsp. v... 139 9e-033
gb|BQ663194.1|BQ663194 HU01E02w HU Hordeum vulgare subsp. v... 137 4e-032
gb|AL511981.1|AL511981 AL511981 Hordeum vulgare Barke devel... 114 5e-032
gb|BQ660173.1|BQ660173 HI01E18w HI Hordeum vulgare subsp. v... 135 2e-031
gb|AL502558.1|AL502558 AL502558 Hordeum vulgare Barke roots... 132 1e-030
gb|CA028903.1|CA028903 HZ63J10r HZ Hordeum vulgare subsp. v... 132 1e-030
gb|BQ660249.1|BQ660249 HI01K09w HI Hordeum vulgare subsp. v... 132 2e-030
gb|AV921443.1|AV921443 AV921443 K. Sato unpublished cDNA li... 109 6e-029
gb|BU985657.1|BU985657 HF08D21r HF Hordeum vulgare subsp. v... 125 4e-028
gb|AL501952.1|AL501952 AL501952 Hordeum vulgare Barke roots... 112 4e-026
gb|BQ765660.1|BQ765660 EBro03_SQ007_F19_R root, 3 week, wat... 115 3e-025
gb|CA017215.1|CA017215 HV14C18u HV Hordeum vulgare subsp. v... 108 4e-023
gb|BM374115.1|BM374115 EBma03_SQ003_L03_R maternal, 8 DPA, ... 101 3e-021
>gb|BU973151.1|BU973151 HB23O18r BC Hordeum vulgare subsp. vulgare cDNA clone HB23O18
5-PRIME, mRNA sequence
Length = 515
Score = 211 bits (456), Expect = 2e-054
Identities = 83/104 (79%), Positives = 90/104 (86%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIPEPG ST+Q VCG V CATVLISGRPVV+QP L ALVAAWLPGSEGQG+TD
Sbjct: 78 NLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWLPGSEGQGVTD 257
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
LFGD+GFTG LPRTWFKSVDQLPMN GD HYDPLF LG+GLTT
Sbjct: 258 ALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTT 389
Score = 140 bits (300), Expect = 7e-033
Identities = 60/84 (71%), Positives = 63/84 (75%)
Frame = -3 / -2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWSTDLNHVRGS+PV P SP S SV P PS PGS AATSA +GC TTGRPLMS
Sbjct: 334 FIGSWSTDLNHVRGSLPVNPKSPNSASVTPCPSEPGSHAATSASEAASSGCTTTGRPLMS 155
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
TVA T PHT VL PGSG+VRF
Sbjct: 154 TVAHRTPPHTACTVLRPGSGMVRF 83
>gb|CA015249.1|CA015249 HT13L19r HT Hordeum vulgare subsp. vulgare cDNA clone HT13L19
5-PRIME, mRNA sequence
Length = 570
Score = 211 bits (456), Expect = 2e-054
Identities = 83/104 (79%), Positives = 90/104 (86%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIPEPG ST+Q VCG V CATVLISGRPVV+QP L ALVAAWLPGSEGQG+TD
Sbjct: 191 NLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWLPGSEGQGVTD 370
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
LFGD+GFTG LPRTWFKSVDQLPMN GD HYDPLF LG+GLTT
Sbjct: 371 ALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTT 502
Score = 140 bits (300), Expect = 7e-033
Identities = 60/84 (71%), Positives = 63/84 (75%)
Frame = -3 / -1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWSTDLNHVRGS+PV P SP S SV P PS PGS AATSA +GC TTGRPLMS
Sbjct: 447 FIGSWSTDLNHVRGSLPVNPKSPNSASVTPCPSEPGSHAATSASEAASSGCTTTGRPLMS 268
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
TVA T PHT VL PGSG+VRF
Sbjct: 267 TVAHRTPPHTACTVLRPGSGMVRF 196
>gb|AF102868.1| Hordeum vulgare subsp. vulgare beta-D-glucan exohydrolase isoenzyme
ExoI mRNA, complete cds
Length = 2161
Score = 211 bits (456), Expect = 2e-054
Identities = 83/104 (79%), Positives = 90/104 (86%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIPEPG ST+Q VCG V CATVLISGRPVV+QP L ALVAAWLPGSEGQG+TD
Sbjct: 1580 NLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWLPGSEGQGVTD 1759
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
LFGD+GFTG LPRTWFKSVDQLPMN GD HYDPLF LG+GLTT
Sbjct: 1760 ALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTT 1891
Score = 140 bits (300), Expect = 7e-033
Identities = 60/84 (71%), Positives = 63/84 (75%)
Frame = -3 / -2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWSTDLNHVRGS+PV P SP S SV P PS PGS AATSA +GC TTGRPLMS
Sbjct: 1836 FIGSWSTDLNHVRGSLPVNPKSPNSASVTPCPSEPGSHAATSASEAASSGCTTTGRPLMS 1657
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
TVA T PHT VL PGSG+VRF
Sbjct: 1656 TVAHRTPPHTACTVLRPGSGMVRF 1585
>gb|AV909243.1|AV909243 AV909243 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12b24 5', mRNA sequence
Length = 655
Score = 203 bits (437), Expect = 8e-052
Identities = 76/105 (72%), Positives = 89/105 (84%)
Frame = +1 / +1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQTVC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 199 NLNLTIPAPGPSVIQTVCKSVRCVVVLISGRPLVLEPYISAMDAFVAAWLPGSEGQGVAD 378
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 379 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 513
Score = 121 bits (259), Expect = 3e-027
Identities = 52/84 (61%), Positives = 56/84 (66%)
Frame = -3 / -3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 455 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSSTSGLPEMS 276
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HTVW+ GPG+GIVRF
Sbjct: 275 TTTHLTLLHTVWITEGPGAGIVRF 204
>gb|AV911128.1|AV911128 AV911128 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12b24 3', mRNA sequence
Length = 609
Score = 203 bits (437), Expect = 8e-052
Identities = 76/105 (72%), Positives = 89/105 (84%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQTVC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 436 NLNLTIPAPGPSVIQTVCKSVRCVVVLISGRPLVLEPYISAMDAFVAAWLPGSEGQGVAD 257
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 256 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 122
Score = 121 bits (259), Expect = 3e-027
Identities = 52/84 (61%), Positives = 56/84 (66%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 180 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSSTSGLPEMS 359
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HTVW+ GPG+GIVRF
Sbjct: 360 TTTHLTLLHTVWITEGPGAGIVRF 431
>gb|BF627275.3|BF627275 HVSMEb0004G19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004G19f, mRNA sequence
Length = 636
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 168 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 347
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 348 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 482
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / -3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 424 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 245
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 244 TTTHLTLLHTFWITEGPGAGIVRF 173
>gb|AV918661.1|AV918661 AV918661 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m18 3', mRNA sequence
Length = 663
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / -1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 405 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 226
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 225 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 91
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 149 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 328
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 329 TTTHLTLLHTFWITEGPGAGIVRF 400
>gb|AV919570.1|AV919570 AV919570 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6k08 3', mRNA sequence
Length = 696
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 433 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 254
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 253 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 119
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 177 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 356
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 357 TTTHLTLLHTFWITEGPGAGIVRF 428
>gb|AV920100.1|AV920100 AV920100 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9e08 3', mRNA sequence
Length = 682
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / -1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 433 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 254
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 253 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 119
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 177 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 356
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 357 TTTHLTLLHTFWITEGPGAGIVRF 428
>gb|AV930613.1|AV930613 AV930613 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24f16 3', mRNA sequence
Length = 599
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / -1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 398 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 219
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 218 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 84
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 142 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 321
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 322 TTTHLTLLHTFWITEGPGAGIVRF 393
>gb|BQ657885.1|BQ657885 HA06J20u HA Hordeum vulgare subsp. vulgare cDNA clone HA06J20
3-PRIME, mRNA sequence
Length = 454
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / -1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 442 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 263
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 262 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 128
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 186 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 365
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 366 TTTHLTLLHTFWITEGPGAGIVRF 437
>gb|BQ662134.1|BQ662134 HR01L02u HR Hordeum vulgare subsp. vulgare cDNA clone HR01L02
3-PRIME, mRNA sequence
Length = 457
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / -2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 447 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 268
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 267 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 133
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 191 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 370
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 371 TTTHLTLLHTFWITEGPGAGIVRF 442
>gb|BQ663930.1|BQ663930 HU04K15u HU Hordeum vulgare subsp. vulgare cDNA clone HU04K15
3-PRIME, mRNA sequence
Length = 582
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / -1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 447 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 268
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 267 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 133
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 191 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 370
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 371 TTTHLTLLHTFWITEGPGAGIVRF 442
>gb|BM374002.2|BM374002 EBma03_SQ003_F17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_F17 5', mRNA sequence
Length = 533
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 77 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 256
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 257 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 391
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / -3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 333 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 154
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 153 TTTHLTLLHTFWITEGPGAGIVRF 82
>gb|BU983489.1|BU983489 HA29O13r HA Hordeum vulgare subsp. vulgare cDNA clone HA29O13
5-PRIME, mRNA sequence
Length = 447
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 48 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 227
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 228 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 362
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / -3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 304 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 125
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 124 TTTHLTLLHTFWITEGPGAGIVRF 53
>gb|BU997464.1|BU997464 HI08B05r HI Hordeum vulgare subsp. vulgare cDNA clone HI08B05
5-PRIME, mRNA sequence
Length = 594
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / -1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 471 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 292
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 291 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 157
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 215 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 394
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 395 TTTHLTLLHTFWITEGPGAGIVRF 466
>gb|BJ467252.1|BJ467252 BJ467252 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26e21 3', mRNA sequence
Length = 522
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 427 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 248
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 247 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 113
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 171 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 350
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 351 TTTHLTLLHTFWITEGPGAGIVRF 422
>gb|CB858339.1|CB858339 HI06K15w HI Hordeum vulgare subsp. vulgare cDNA clone HI06K15
3-PRIME, mRNA sequence
Length = 542
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 447 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 268
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 267 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 133
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 191 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 370
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 371 TTTHLTLLHTFWITEGPGAGIVRF 442
>gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydrolase, isoenzyme ExoII, mRNA,
complete cds
Length = 2105
Score = 201 bits (433), Expect = 3e-051
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 1574 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 1753
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 1754 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 1888
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / -3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 1830 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 1651
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 1650 TTTHLTLLHTFWITEGPGAGIVRF 1579
>gb|BU976239.1|BU976239 HA03G04u HA Hordeum vulgare subsp. vulgare cDNA clone HA03G04
3-PRIME, mRNA sequence
Length = 456
Score = 198 bits (427), Expect = 2e-050
Identities = 74/105 (70%), Positives = 87/105 (82%)
Frame = +1 / -2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 446 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 267
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLT +
Sbjct: 266 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTPE 132
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / +1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 190 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 369
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 370 TTTHLTLLHTFWITEGPGAGIVRF 441
>gb|BU977332.1|BU977332 HA11D20u HA Hordeum vulgare subsp. vulgare cDNA clone HA11D20
3-PRIME, mRNA sequence
Length = 439
Score = 197 bits (424), Expect = 5e-050
Identities = 74/102 (72%), Positives = 85/102 (83%)
Frame = +1 / -2
Query: 10 LTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLF 189
LTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ DVLF
Sbjct: 438 LTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLF 259
Query: 190 GDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
GDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 258 GDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 133
Score = 116 bits (249), Expect = 7e-026
Identities = 50/83 (60%), Positives = 54/83 (65%)
Frame = -3 / +2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 191 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 370
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T T HT W+ GPG+GIVR
Sbjct: 371 TTTHLTLLHTFWITEGPGAGIVR 439
>gb|BQ468807.1|BQ468807 HM02G11r HM Hordeum vulgare subsp. vulgare cDNA clone HM02G11
5-PRIME, mRNA sequence
Length = 558
Score = 195 bits (421), Expect = 1e-049
Identities = 73/105 (69%), Positives = 88/105 (83%)
Frame = +1 / +1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGP I+ VC V C VL+SGRP+V++P+L T+ ALVAAWLPG+EG G+ D
Sbjct: 187 NLNLTIPGPGPEVIRKVCELVKCVVVLVSGRPLVVEPYLDTMDALVAAWLPGTEGHGVAD 366
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G LPRTW +SVDQLPMNYGD+ YDPLFP GFGLTT+
Sbjct: 367 VLFGDYGFSGKLPRTWVRSVDQLPMNYGDKLYDPLFPFGFGLTTK 501
Score = 123 bits (263), Expect = 8e-028
Identities = 52/83 (62%), Positives = 58/83 (69%)
Frame = -3 / -2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
F+GSWSTDL HVRGS P KP*SPKSTS PWPS+PGS AATSA V R G T+GRP
Sbjct: 443 FMGSWSTDLTHVRGSFPEKP*SPKSTSATPWPSVPGSHAATSASMVSRYGSTTSGRPETR 264
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T T+ HT + GPG G+VR
Sbjct: 263 TTTHLTSSHTFLITSGPGPGMVR 195
>gb|BQ661201.1|BQ661201 HM02G11u HM Hordeum vulgare subsp. vulgare cDNA clone HM02G11
3-PRIME, mRNA sequence
Length = 552
Score = 195 bits (421), Expect = 1e-049
Identities = 73/105 (69%), Positives = 88/105 (83%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGP I+ VC V C VL+SGRP+V++P+L T+ ALVAAWLPG+EG G+ D
Sbjct: 538 NLNLTIPGPGPEVIRKVCELVKCVVVLVSGRPLVVEPYLDTMDALVAAWLPGTEGHGVAD 359
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G LPRTW +SVDQLPMNYGD+ YDPLFP GFGLTT+
Sbjct: 358 VLFGDYGFSGKLPRTWVRSVDQLPMNYGDKLYDPLFPFGFGLTTK 224
Score = 123 bits (263), Expect = 8e-028
Identities = 52/83 (62%), Positives = 58/83 (69%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
F+GSWSTDL HVRGS P KP*SPKSTS PWPS+PGS AATSA V R G T+GRP
Sbjct: 282 FMGSWSTDLTHVRGSFPEKP*SPKSTSATPWPSVPGSHAATSASMVSRYGSTTSGRPETR 461
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T T+ HT + GPG G+VR
Sbjct: 462 TTTHLTSSHTFLITSGPGPGMVR 530
>gb|CB881387.1|CB881387 HM09K13w HM Hordeum vulgare subsp. vulgare cDNA clone HM09K13
3-PRIME, mRNA sequence
Length = 638
Score = 195 bits (421), Expect = 1e-049
Identities = 73/105 (69%), Positives = 88/105 (83%)
Frame = +1 / -2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGP I+ VC V C VL+SGRP+V++P+L T+ ALVAAWLPG+EG G+ D
Sbjct: 460 NLNLTIPGPGPEVIRKVCELVKCVVVLVSGRPLVVEPYLDTMDALVAAWLPGTEGHGVAD 281
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGF+G LPRTW +SVDQLPMNYGD+ YDPLFP GFGLTT+
Sbjct: 280 VLFGDYGFSGKLPRTWVRSVDQLPMNYGDKLYDPLFPFGFGLTTK 146
Score = 123 bits (263), Expect = 8e-028
Identities = 52/83 (62%), Positives = 58/83 (69%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
F+GSWSTDL HVRGS P KP*SPKSTS PWPS+PGS AATSA V R G T+GRP
Sbjct: 204 FMGSWSTDLTHVRGSFPEKP*SPKSTSATPWPSVPGSHAATSASMVSRYGSTTSGRPETR 383
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T T+ HT + GPG G+VR
Sbjct: 384 TTTHLTSSHTFLITSGPGPGMVR 452
>gb|AV833400.1|AV833400 AV833400 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags8b19, mRNA sequence
Length = 540
Score = 195 bits (420), Expect = 2e-049
Identities = 74/100 (74%), Positives = 85/100 (85%)
Frame = +1 / +1
Query: 7 NLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVL 186
+LTI +PGP TI+TVC AV C V++SGRPVVI+P+L + ALVAAWLPG+EGQG+ DVL
Sbjct: 220 DLTILDPGPDTIRTVCSAVKCVVVIVSGRPVVIEPYLPLMEALVAAWLPGTEGQGVADVL 399
Query: 187 FGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGL 306
FGDY FTG L RTWFKSVDQLPMN+GD HYDPLFP GFGL
Sbjct: 400 FGDYSFTGKLSRTWFKSVDQLPMNFGDPHYDPLFPFGFGL 519
Score = 108 bits (231), Expect = 2e-023
Identities = 52/83 (62%), Positives = 56/83 (67%)
Frame = -3 / -2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
F+GSWSTDLN VR S PVK *SP TS P PS+PGSQAATSA R G +TTGRP
Sbjct: 470 FMGSWSTDLNQVRESFPVKL*SPNRTSATPCPSVPGSQAATSASIRGRYGSMTTGRPETI 291
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TA TV +V GPGS IVR
Sbjct: 290 TTTHLTAEQTVRIVSGPGSRIVR 222
>gb|BU995937.1|BU995937 HM11N11r HM Hordeum vulgare subsp. vulgare cDNA clone HM11N11
5-PRIME, mRNA sequence
Length = 636
Score = 193 bits (416), Expect = 7e-049
Identities = 72/105 (68%), Positives = 88/105 (83%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGP I+ VC V C VL+SGRP+V++P+L T+ ALVAAWLPG+EG G+ D
Sbjct: 246 NLNLTIPGPGPEVIRKVCELVKCVVVLVSGRPLVVEPYLDTMDALVAAWLPGTEGHGVAD 425
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGD+GF+G LPRTW +SVDQLPMNYGD+ YDPLFP GFGLTT+
Sbjct: 426 VLFGDHGFSGKLPRTWVRSVDQLPMNYGDKLYDPLFPFGFGLTTK 560
Score = 125 bits (267), Expect = 2e-028
Identities = 53/83 (63%), Positives = 58/83 (69%)
Frame = -3 / -3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
F+GSWSTDL HVRGS P KP SPKSTS PWPS+PGSQAATSA V R G T+GRP
Sbjct: 502 FMGSWSTDLTHVRGSFPEKPWSPKSTSATPWPSVPGSQAATSASMVSRYGSTTSGRPETR 323
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T T+ HT M GPG G+VR
Sbjct: 322 TTTHLTSSHTFLMTSGPGPGMVR 254
>gb|CB882092.1|CB882092 HM11N11w HM Hordeum vulgare subsp. vulgare cDNA clone HM11N11
3-PRIME, mRNA sequence
Length = 655
Score = 193 bits (416), Expect = 7e-049
Identities = 72/105 (68%), Positives = 88/105 (83%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGP I+ VC V C VL+SGRP+V++P+L T+ ALVAAWLPG+EG G+ D
Sbjct: 509 NLNLTIPGPGPEVIRKVCELVKCVVVLVSGRPLVVEPYLDTMDALVAAWLPGTEGHGVAD 330
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGD+GF+G LPRTW +SVDQLPMNYGD+ YDPLFP GFGLTT+
Sbjct: 329 VLFGDHGFSGKLPRTWVRSVDQLPMNYGDKLYDPLFPFGFGLTTK 195
Score = 125 bits (267), Expect = 2e-028
Identities = 53/83 (63%), Positives = 58/83 (69%)
Frame = -3 / +1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
F+GSWSTDL HVRGS P KP SPKSTS PWPS+PGSQAATSA V R G T+GRP
Sbjct: 253 FMGSWSTDLTHVRGSFPEKPWSPKSTSATPWPSVPGSQAATSASMVSRYGSTTSGRPETR 432
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T T+ HT M GPG G+VR
Sbjct: 433 TTTHLTSSHTFLMTSGPGPGMVR 501
>gb|BM098018.2|BM098018 EBpi03_SQ002_F03_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_F03 5', mRNA sequence
Length = 523
Score = 187 bits (403), Expect(2) = 2e-048
Identities = 70/99 (70%), Positives = 82/99 (82%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 78 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 257
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLG 297
VLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP G
Sbjct: 258 VLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPSG 374
Score = 119 bits (255), Expect = 1e-026
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -3 / -1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 334 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 155
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
T T HT W+ GPG+GIVRF
Sbjct: 154 TTTHLTLLHTFWITEGPGAGIVRF 83
Score = 24.4 bits (47), Expect(2) = 2e-048
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1 / +2
Query: 280 PLFPLGFGLTTQ 315
P P GFGLTT+
Sbjct: 356 PALPFGFGLTTE 391
>gb|AL502756.1|AL502756 AL502756 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08K03u 3', mRNA sequence
Length = 552
Score = 185 bits (399), Expect(2) = 2e-047
Identities = 69/97 (71%), Positives = 80/97 (82%)
Frame = +1 / -3
Query: 25 PGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGF 204
P PS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ DVLFGDYGF
Sbjct: 496 PAPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGF 317
Query: 205 TGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 316 SGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 206
Score = 104 bits (221), Expect(2) = 3e-023
Identities = 45/78 (57%), Positives = 48/78 (61%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 264 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 443
Query: 77 TVAQGTAPHTVWMVLGPG 24
T T HT W+ G G
Sbjct: 444 TTTHLTLLHTFWITEGAG 497
Score = 23.5 bits (45), Expect(2) = 3e-023
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 32 GPGSGIVRF 6
GPG+GIVRF
Sbjct: 490 GPGAGIVRF 516
Score = 23.5 bits (45), Expect(2) = 2e-047
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / -2
Query: 7 NLTIPEPGP 33
NLTIP PGP
Sbjct: 515 NLTIPAPGP 489
>gb|AV913362.1|AV913362 AV913362 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m18 5', mRNA sequence
Length = 585
Score = 104 bits (221), Expect(2) = 4e-046
Identities = 39/54 (72%), Positives = 42/54 (77%)
Frame = +1 / +2
Query: 151 PGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
P + DVLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT
Sbjct: 422 PARRARAWPDVLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTT 583
Score = 100 bits (213), Expect(2) = 4e-046
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = +1 / +1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGI 174
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+
Sbjct: 271 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGV 444
Score = 70.7 bits (148), Expect(2) = 7e-022
Identities = 30/55 (54%), Positives = 34/55 (61%)
Frame = -3 / -2
Query: 170 PWPSLPGSQAATSACTVPRNGCITTGRPLMSTVAQGTAPHTVWMVLGPGSGIVRF 6
PWPS PGS AAT+A G T+G P MST T HT W+ GPG+GIVRF
Sbjct: 440 PWPSEPGSHAATNASMALMYGSTTSGLPEMSTTTHLTLLHTFWITEGPGAGIVRF 276
Score = 52.4 bits (108), Expect(2) = 7e-022
Identities = 21/27 (77%), Positives = 21/27 (77%)
Frame = -3 / -1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTS 177
FIGSWS DLNHVR S P P*SP STS
Sbjct: 528 FIGSWSADLNHVRASFPENP*SPNSTS 448
>gb|BI956426.1|BI956426 HVSMEn0003E13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003E13f, mRNA sequence
Length = 453
Score = 181 bits (390), Expect = 3e-045
Identities = 68/97 (70%), Positives = 79/97 (81%)
Frame = +1 / -1
Query: 25 PGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGF 204
PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ DVLFGDYGF
Sbjct: 453 PGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGF 274
Query: 205 TGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
+G L RTWFKS DQLPMN GD+ YDPLFP G GLTT+
Sbjct: 273 SGKLARTWFKSADQLPMNVGDKXYDPLFPFGLGLTTE 163
Score = 105 bits (223), Expect = 3e-022
Identities = 45/77 (58%), Positives = 48/77 (62%)
Frame = -3 / +2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWS DLNHVR S P P*SP STS PWPS PGS AAT+A G T+G P MS
Sbjct: 221 FIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLPEMS 400
Query: 77 TVAQGTAPHTVWMVLGP 27
T T HT W+ GP
Sbjct: 401 TTTHLTLLHTFWITEGP 451
>gb|AL510704.1|AL510704 AL510704 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05L24u 3',
mRNA sequence
Length = 496
Score = 173 bits (372), Expect = 8e-043
Identities = 64/89 (71%), Positives = 75/89 (84%)
Frame = +1 / -3
Query: 49 VCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTW 228
VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ DVLFGDYGF+G L RTW
Sbjct: 491 VCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKLARTW 312
Query: 229 FKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
FKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 311 FKSADQLPMNVGDKHYDPLFPFGFGLTTE 225
>gb|BM101478.2|BM101478 EBpi01_SQ003_P14_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_P14 5', mRNA sequence
Length = 411
Score = 167 bits (360), Expect = 3e-041
Identities = 62/85 (72%), Positives = 72/85 (84%)
Frame = +1 / +3
Query: 61 VPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSV 240
V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ DVLFGDYGF+G L RTWFKS
Sbjct: 3 VRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKLARTWFKSA 182
Query: 241 DQLPMNYGDEHYDPLFPLGFGLTTQ 315
DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 183 DQLPMNVGDKHYDPLFPFGFGLTTE 257
>gb|BM376573.1|BM376573 EBem05_SQ002_J19_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_J19 5', mRNA sequence
Length = 370
Score = 160 bits (345), Expect = 4e-039
Identities = 59/79 (74%), Positives = 69/79 (87%)
Frame = +1 / +1
Query: 79 LISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMN 258
LISGRP+V++P++ + A VAAWLPGSEGQG+ DVLFGDYGF+G L RTWFKS DQLPMN
Sbjct: 1 LISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKLARTWFKSADQLPMN 180
Query: 259 YGDEHYDPLFPLGFGLTTQ 315
GD+HYDPLFP GFGLTT+
Sbjct: 181 VGDKHYDPLFPFGFGLTTE 237
>gb|CA000004.1|CA000004 HS16F17u HS Hordeum vulgare subsp. vulgare cDNA clone HS16F17
3-PRIME, mRNA sequence
Length = 465
Score = 154 bits (330), Expect = 5e-037
Identities = 59/73 (80%), Positives = 64/73 (87%)
Frame = +1 / -2
Query: 94 PVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEH 273
PVV+QP L +ALVAAWLPGSEGQG+TD LFGD+GFTG LPRTWFKSVDQLPMN GD H
Sbjct: 464 PVVVQPLLXASNALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAH 285
Query: 274 YDPLFPLGFGLTT 312
YDPLF LG+GLTT
Sbjct: 284 YDPLFRLGYGLTT 246
>gb|CA016117.1|CA016117 HV10I20u HV Hordeum vulgare subsp. vulgare cDNA clone HV10I20
3-PRIME, mRNA sequence
Length = 472
Score = 146 bits (314), Expect = 8e-035
Identities = 56/62 (90%), Positives = 58/62 (93%)
Frame = +1 / -2
Query: 130 ALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLT 309
ALVAAWLPGSEGQGITD LFGDYGFTG LPRTWFKSVDQLPMN GD HYDPLFPLG+GLT
Sbjct: 462 ALVAAWLPGSEGQGITDALFGDYGFTGKLPRTWFKSVDQLPMNVGDAHYDPLFPLGYGLT 283
Query: 310 TQ 315
T+
Sbjct: 282 TE 277
>gb|CA006048.1|CA006048 HU05G22u HU Hordeum vulgare subsp. vulgare cDNA clone HU05G22
3-PRIME, mRNA sequence
Length = 547
Score = 121 bits (259), Expect(2) = 9e-033
Identities = 47/70 (67%), Positives = 54/70 (77%)
Frame = +1 / -1
Query: 97 VVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHY 276
V+ L + ALVAAWLPGSEG GITD LFGD+ F GTLP TWF+S DQLP+N GD +Y
Sbjct: 454 VIEPQVLEKIDALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWFRSADQLPINVGDANY 275
Query: 277 DPLFPLGFGL 306
DPLFP G+GL
Sbjct: 274 DPLFPFGYGL 245
Score = 38.2 bits (77), Expect(2) = 9e-033
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1 / -1
Query: 7 NLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQP 111
+L+IP G I V VP +++SGRP+VI+P
Sbjct: 547 DLSIPFNGSDLITRVASKVPTLVIVVSGRPLVIEP 443
>gb|BU999923.1|BU999923 HS16P05u HS Hordeum vulgare subsp. vulgare cDNA clone HS16P05
3-PRIME, mRNA sequence
Length = 446
Score = 139 bits (299), Expect = 9e-033
Identities = 54/66 (81%), Positives = 57/66 (86%)
Frame = +1 / -1
Query: 115 LGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPL 294
L ALVAAWLPGSEGQG+TD LFGD+GFTG LPRTWFKSVDQLPMN GD HYDPLF L
Sbjct: 443 LAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRL 264
Query: 295 GFGLTT 312
G+GLTT
Sbjct: 263 GYGLTT 246
>gb|BQ663194.1|BQ663194 HU01E02w HU Hordeum vulgare subsp. vulgare cDNA clone HU01E02
3-PRIME, mRNA sequence
Length = 427
Score = 137 bits (294), Expect = 4e-032
Identities = 52/61 (85%), Positives = 55/61 (90%)
Frame = +1 / -1
Query: 130 ALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLT 309
ALV AWLPGSEGQG+TD LFGD+GFTG LPRTWFKSVDQLPMN GD HYDPLF LG+GLT
Sbjct: 427 ALVTAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLT 248
Query: 310 T 312
T
Sbjct: 247 T 245
>gb|AL511981.1|AL511981 AL511981 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09P15u 3',
mRNA sequence
Length = 527
Score = 114 bits (243), Expect(3) = 5e-032
Identities = 43/53 (81%), Positives = 45/53 (84%)
Frame = +1 / -3
Query: 133 LVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFP 291
LVAAWLPGSEGQG+TD LFGD+GFTG LPRTWFKSVDQLPMN GD H P P
Sbjct: 444 LVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHLRPALP 286
Score = 30.9 bits (61), Expect(3) = 5e-032
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -1
Query: 274 YDPLFPLGFGLTT 312
YDPLF LG+GLTT
Sbjct: 302 YDPLFRLGYGLTT 264
Score = 29.9 bits (59), Expect(3) = 5e-032
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -1
Query: 82 ISGRPVVIQPFLG 120
ISGRPVV+QP LG
Sbjct: 497 ISGRPVVVQPLLG 459
>gb|BQ660173.1|BQ660173 HI01E18w HI Hordeum vulgare subsp. vulgare cDNA clone HI01E18
3-PRIME, mRNA sequence
Length = 423
Score = 135 bits (290), Expect = 2e-031
Identities = 51/59 (86%), Positives = 54/59 (91%)
Frame = +1 / -2
Query: 136 VAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
VAAWLPGSEGQG+TD LFGD+GFTG LPRTWFKSVDQLPMN GD HYDPLF LG+GLTT
Sbjct: 422 VAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTT 246
>gb|AL502558.1|AL502558 AL502558 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07P13u 3', mRNA sequence
Length = 364
Score = 132 bits (283), Expect = 1e-030
Identities = 49/62 (79%), Positives = 53/62 (85%)
Frame = +1 / -3
Query: 130 ALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLT 309
A VAAWLPGSEGQG+ DVLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGL
Sbjct: 353 AFVAAWLPGSEGQGVADVLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLX 174
Query: 310 TQ 315
+
Sbjct: 173 XE 168
>gb|CA028903.1|CA028903 HZ63J10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63J10
5-PRIME, mRNA sequence
Length = 361
Score = 132 bits (283), Expect = 1e-030
Identities = 52/68 (76%), Positives = 58/68 (85%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIPEPG ST+Q VCG V CATVLISGRPVV+QP L ALVAAWLPGSEGQG+TD
Sbjct: 158 NLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWLPGSEGQGVTD 337
Query: 181 VLFGDYGF 204
LFGD+GF
Sbjct: 338 ALFGDFGF 361
>gb|BQ660249.1|BQ660249 HI01K09w HI Hordeum vulgare subsp. vulgare cDNA clone HI01K09
3-PRIME, mRNA sequence
Length = 417
Score = 132 bits (282), Expect = 2e-030
Identities = 49/57 (85%), Positives = 52/57 (91%)
Frame = +1 / -2
Query: 142 AWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
AWLPGSEGQG+TD LFGD+GFTG LPRTWFKSVDQLPMN GD HYDPLF LG+GLTT
Sbjct: 416 AWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTT 246
>gb|AV921443.1|AV921443 AV921443 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23h03 3', mRNA sequence
Length = 612
Score = 109 bits (232), Expect(2) = 6e-029
Identities = 43/70 (61%), Positives = 51/70 (72%)
Frame = +1 / -3
Query: 97 VVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHY 276
V+ L V ALV AWLPGSEG G+TD LFGD+ F GTLP TWF+S DQLP++ +Y
Sbjct: 337 VIEPQVLEKVDALVVAWLPGSEGMGVTDCLFGDHDFVGTLPVTWFRSDDQLPIDIRGANY 158
Query: 277 DPLFPLGFGL 306
DPLFP G+GL
Sbjct: 157 DPLFPFGYGL 128
Score = 37.7 bits (76), Expect(2) = 6e-029
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1 / -3
Query: 7 NLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQP 111
+L+IP G I V VP ++ISGRP+VI+P
Sbjct: 430 DLSIPFNGSDLITRVARKVPTLVIVISGRPLVIEP 326
>gb|BU985657.1|BU985657 HF08D21r HF Hordeum vulgare subsp. vulgare cDNA clone HF08D21
5-PRIME, mRNA sequence
Length = 412
Score = 125 bits (267), Expect(2) = 4e-028
Identities = 47/55 (85%), Positives = 50/55 (90%)
Frame = +1 / +3
Query: 148 LPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
LPGSEGQG+TD LFGD+GFTG LPRTWFKSVDQLPMN GD HYDPLF LG+GLTT
Sbjct: 3 LPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTT 167
Score = 18.5 bits (34), Expect(2) = 4e-028
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2 / +3
Query: 371 YLVEIGNWIKQCSGEGT*TGSSCF 442
Y V I + I + GT*T SCF
Sbjct: 183 Y*VIILDSIMEIGKLGT*TVGSCF 254
>gb|AL501952.1|AL501952 AL501952 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05P08u 3', mRNA sequence
Length = 501
Score = 112 bits (240), Expect(2) = 4e-026
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = +1 / -2
Query: 151 PGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
P QG+ DVLFGDYGF+G L RTWFKS DQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 449 PARRAQGVADVLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTTE 285
Score = 24.4 bits (47), Expect(2) = 4e-026
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1 / -1
Query: 136 VAAWLPGSEGQG 171
VAA LPGSEG G
Sbjct: 465 VAAXLPGSEGPG 430
>gb|BQ765660.1|BQ765660 EBro03_SQ007_F19_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_F19 5', mRNA sequence
Length = 371
Score = 115 bits (245), Expect = 3e-025
Identities = 43/65 (66%), Positives = 53/65 (81%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP PGPS IQ VC +V C VLISGRP+V++P++ + A VAAWLPGSEGQG+ D
Sbjct: 177 NLNLTIPAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVAD 356
Query: 181 VLFGD 195
VLFGD
Sbjct: 357 VLFGD 371
>gb|CA017215.1|CA017215 HV14C18u HV Hordeum vulgare subsp. vulgare cDNA clone HV14C18
3-PRIME, mRNA sequence
Length = 391
Score = 108 bits (230), Expect(2) = 4e-023
Identities = 40/48 (83%), Positives = 43/48 (89%)
Frame = +1 / -2
Query: 169 GITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
G+TD LFGD+GFTG LPRTWFKSVDQLPMN GD HYDPLF LG+GLTT
Sbjct: 390 GVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTT 247
Score = 18.5 bits (34), Expect(2) = 4e-023
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2 / -2
Query: 371 YLVEIGNWIKQCSGEGT*TGSSCF 442
Y V I + I + GT*T SCF
Sbjct: 231 Y*VIILDSIMEIGKLGT*TVGSCF 160
>gb|BM374115.1|BM374115 EBma03_SQ003_L03_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_L03 5', mRNA sequence
Length = 386
Score = 101 bits (216), Expect(2) = 3e-021
Identities = 38/45 (84%), Positives = 40/45 (88%)
Frame = +1 / +3
Query: 178 DVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
D LFGD+GFTG LPRTWFKSVDQLPMN GD HYDPLF LG+GLTT
Sbjct: 3 DALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTT 137
Score = 18.5 bits (34), Expect(2) = 3e-021
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2 / +3
Query: 371 YLVEIGNWIKQCSGEGT*TGSSCF 442
Y V I + I + GT*T SCF
Sbjct: 153 Y*VIILDSIMEIGKLGT*TVGSCF 224
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 246,951,073
Number of Sequences: 312970
Number of extensions: 3593073
Number of successful extensions: 74964
Number of sequences better than 1.0e-020: 64
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 5895922551
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)