TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430991.2.1
(515 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK124684.1|CK124684 BES1824109p11 BES1824 Hordeum vulgar... 331 2e-090
gb|BJ463761.1|BJ463761 BJ463761 K. Sato unpublished cDNA li... 223 6e-058
gb|BJ463762.1|BJ463762 BJ463762 K. Sato unpublished cDNA li... 221 2e-057
gb|BQ471670.1|BQ471670 HV03B24r HV Hordeum vulgare subsp. v... 204 3e-052
gb|AL450785.1|AL450785 AL450785 Hordeum vulgare Barke etiol... 131 2e-039
gb|BU973760.1|BU973760 HB25O06r BC Hordeum vulgare subsp. v... 136 1e-031
gb|BU995595.1|BU995595 HM10M02r HM Hordeum vulgare subsp. v... 120 1e-030
gb|BF266558.3|BF266558 HV_CEa0015H07f Hordeum vulgare seedl... 120 5e-027
gb|BU988833.1|BU988833 HF18N17r HF Hordeum vulgare subsp. v... 92 4e-022
gb|CA012566.1|CA012566 HT05M19r HT Hordeum vulgare subsp. v... 104 7e-022
>gb|CK124684.1|CK124684 BES1824109p11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P119 5-PRIME, mRNA sequence
Length = 787
Score = 331 bits (717), Expect = 2e-090
Identities = 131/153 (85%), Positives = 143/153 (93%)
Frame = -2 / +1
Query: 460 IAAEELPKGLYCLGVRLTMXWFKSPELQRKFSDRSPAVQSNLRDNSLYHFCVFSDNILAV 281
IAAEELPKGLYCLGVRLTM WF S ELQRKF DRSPAVQSNLRDNSLYH+CVFSDNI+AV
Sbjct: 4 IAAEELPKGLYCLGVRLTMEWFNSAELQRKFLDRSPAVQSNLRDNSLYHYCVFSDNIIAV 183
Query: 280 SVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMNDYRGVTVEIQKVEDFTWLNASY 101
SVV+NST +NS+HP+K+VFHLVTDE+NY PM+AWF +NDYRG VEIQKVEDFTWLNASY
Sbjct: 184 SVVINSTTLNSKHPEKIVFHLVTDEVNYDPMRAWFALNDYRGAIVEIQKVEDFTWLNASY 363
Query: 100 VPVLKQLQNAATQKFYFSGSGSRGTPIKFRNPK 2
VPVLKQLQ+AATQ FYFSGSG+RGTPIKFRNPK
Sbjct: 364 VPVLKQLQDAATQNFYFSGSGNRGTPIKFRNPK 462
Score = 247 bits (534), Expect = 3e-065
Identities = 103/153 (67%), Positives = 117/153 (76%)
Frame = -1 / +3
Query: 461 DCC*GAPKGTLLPWCPVNHGXVQESRASEEVFG*EPSSAEQSEG*QPLSFLCLLRQHPCC 282
D C GAPKG LLPWCPVNHG VQ+ RASEEV G*EP SAEQSEG* PLS LC L QH CC
Sbjct: 3 DRCRGAPKGALLPWCPVNHGMVQQCRASEEVLG*EPCSAEQSEG**PLSLLCFLGQHHCC 182
Query: 281 FSCC*FYGYKLEAP*QGCFSLSD**VELCSDEGMVWHE*LQRGHCGDTKGGGLYLAQCIV 102
C FY + +AP*+ CFS D +L +EG+V E*LQRGHCGDT+GGGL+LA+C +
Sbjct: 183 LCCHQFYNSEFKAP*KDCFSFGDRRGQL*PNEGVVCLE*LQRGHCGDTEGGGLHLAKCFL 362
Query: 101 CSRS*TATECCYTEVLLLWQW*SWNTN*IQEPK 3
CS S*TA CCYTE LLLW+W*SWNTN +Q+ K
Sbjct: 363 CSCS*TAPGCCYTEFLLLWKW*SWNTNQVQKSK 461
Score = 235 bits (507), Expect = 2e-061
Identities = 102/153 (66%), Positives = 122/153 (79%)
Frame = +2 / -2
Query: 2 LWVPEFNWCSTTTTAREVELLCSSIL*LFKNGNIRCIEPGKVLHLLYLHSDPSVVIHAKP 181
LW+ E +WCST TT+REVE+LCSSIL LFKN NI I PG+VLHLLYLH+ PSVVI KP
Sbjct: 462 LWISELDWCSTITTSREVEILCSSILELFKNRNIGSI*PGEVLHLLYLHNGPSVVIQGKP 283
Query: 182 CLHRSIVQLISH*VKNNLVRVPRVYSRRINNN*NSKDVV*EDTKMIEAVIPQIALHCWAP 361
H IV L+ H +KNNL RV + S RI++N +S DVV E+T +I+A+IPQIALHC AP
Sbjct: 282 RPHWVIVDLVGHQMKNNLFRVL*IQSCRIDDNRDSNDVVRENTVVIKAIIPQIALHCRAP 103
Query: 362 IRKLPLKLGTLEPXHG*PDTKAIKSLWELLSSN 460
I++LPLKLGT+EP HG*PDTKAIK LWELL S+
Sbjct: 102 IQELPLKLGTVEPFHG*PDTKAIKPLWELLGSD 4
Score = 183 bits (394), Expect(2) = 4e-053
Identities = 85/107 (79%), Positives = 88/107 (82%)
Frame = +3 / -3
Query: 3 FGFLNLIGVPRLPLPEK*NFCVAAFCSCLRTGTYDALSQVKSSTFCISTVTPL*SFMPNH 182
FGFLNLIGVPRLPLPEK* FCVAA SCLRTGT +A SQVKSSTFCIST+ PL*SF NH
Sbjct: 461 FGFLNLIGVPRLPLPEK*KFCVAASWSCLRTGT*EAFSQVKSSTFCISTMAPL*SFKANH 282
Query: 183 AFIGA*FNSSVTK*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 323
A IG+* SSVTK*KT SGC EF VEL TTETA MLSEKTQ **R
Sbjct: 281 ALIGS*LTSSVTK*KTIFSGCFEFRVVELMTTETAMMLSEKTQ***R 141
Score = 139 bits (298), Expect(2) = 1e-044
Identities = 62/102 (60%), Positives = 70/102 (68%)
Frame = +1 / -1
Query: 157 LCSHSCQTMPXXXXXXXXXXXXXKQPCQGASSL*P*N*QQLKQQGCCLRRHKNDRGCYPS 336
LCSHS QT P KQ QGA + *N* Q +QQ CC R+H +D+G YPS
Sbjct: 307 LCSHSRQTTPSLGHS*PRRSPNEKQSFQGALNSEL*N**QQRQQ*CCPRKHSSDKGYYPS 128
Query: 337 DCSALLGSYPKTSSEARDS*TXPWLTGHQGNKVPLGAPQQQS 462
DCSAL GSYP+TSSEAR *T PWLTGHQGNK PLGAP+Q+S
Sbjct: 127 DCSALQGSYPRTSSEARHC*TIPWLTGHQGNKAPLGAPRQRS 2
Score = 103 bits (219), Expect(2) = 2e-040
Identities = 47/67 (70%), Positives = 51/67 (76%)
Frame = -3 / +2
Query: 201 TMLR*RHGLA*MTTEGSLWRYKRWRTLPGSMHRMFPFLNSYRMLLHRSSTSLAVVVVEHQ 22
TM +* GL *MTTEG LWRY+RWRT PG M MF FLNS RMLLHR STSL VV+VEHQ
Sbjct: 263 TMTQ*GRGLP*MTTEGPLWRYRRWRTSPG*MLPMFLFLNSSRMLLHRISTSLEVVIVEHQ 442
Query: 21 LNSGTQS 1
+S QS
Sbjct: 443 SSSEIQS 463
Score = 81.7 bits (172), Expect(2) = 2e-040
Identities = 40/53 (75%), Positives = 41/53 (77%)
Frame = -3 / +2
Query: 456 LLRSSQRDFIALVSG*PWXGSRVPSFRGSFRIGAQQCRAI*GITASIIFVSSQ 298
L RSSQR FIALVSG*PW GS VPSFRGS IGA QCRAI*GI A I V S+
Sbjct: 8 LPRSSQRGFIALVSG*PWNGSTVPSFRGSSWIGALQCRAI*GIIAFITTVFSR 166
Score = 59.7 bits (124), Expect(2) = 1e-044
Identities = 29/40 (72%), Positives = 30/40 (75%)
Frame = +1 / -1
Query: 1 TLGS*I*LVFHDYHCQRSRTSV*QHSVAV*EREHTMH*AR 120
TL * *LVFHDYH QRSR SV*QH AV*E+EH H AR
Sbjct: 463 TLDF*T*LVFHDYHFQRSRNSV*QHPGAV*EQEHRKHLAR 344
Score = 44.1 bits (90), Expect(2) = 4e-053
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3 / -3
Query: 405 MVNRTPRQ*SPFGSSSAAI 461
MVNRTPRQ*SPFGSSSAAI
Sbjct: 59 MVNRTPRQ*SPFGSSSAAI 3
>gb|BJ463761.1|BJ463761 BJ463761 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g13 5', mRNA sequence
Length = 596
Score = 223 bits (481), Expect = 6e-058
Identities = 86/103 (83%), Positives = 97/103 (94%)
Frame = -2 / +3
Query: 310 CVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMNDYRGVTVEIQKV 131
CVFSDNI+AVSVV+NST +NS+HP+K+VFHLVTDE+NY PM+AWF +NDYRG VEIQKV
Sbjct: 9 CVFSDNIIAVSVVINSTTLNSKHPEKIVFHLVTDEVNYDPMRAWFALNDYRGAIVEIQKV 188
Query: 130 EDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRGTPIKFRNPK 2
EDFTWLNASYVPVLKQLQ+AATQ FYFSGSG+RGTPIKFRNPK
Sbjct: 189 EDFTWLNASYVPVLKQLQDAATQNFYFSGSGNRGTPIKFRNPK 317
Score = 182 bits (391), Expect = 2e-045
Identities = 82/103 (79%), Positives = 85/103 (82%)
Frame = +3 / -2
Query: 3 FGFLNLIGVPRLPLPEK*NFCVAAFCSCLRTGTYDALSQVKSSTFCISTVTPL*SFMPNH 182
FGFLNLIGVPRLPLPEK* FCVAA SCLRTGT +A SQVKSSTFCIST+ PL*SF NH
Sbjct: 316 FGFLNLIGVPRLPLPEK*KFCVAASWSCLRTGT*EAFSQVKSSTFCISTMAPL*SFKANH 137
Query: 183 AFIGA*FNSSVTK*KTTLSGCLEFIAVELTTTETARMLSEKTQ 311
A IG+* SSVTK*KT SGC EF VEL TTETA MLSEKTQ
Sbjct: 136 ALIGS*LTSSVTK*KTIFSGCFEFRVVELMTTETAMMLSEKTQ 8
Score = 155 bits (333), Expect = 2e-037
Identities = 63/103 (61%), Positives = 76/103 (73%)
Frame = -1 / +2
Query: 311 LCLLRQHPCCFSCC*FYGYKLEAP*QGCFSLSD**VELCSDEGMVWHE*LQRGHCGDTKG 132
LC L QH CC C FY + +AP*+ CFS D +L +EG+V E*LQRGHCGDT+G
Sbjct: 8 LCFLGQHHCCLCCHQFYNSEFKAP*KDCFSFGDRRGQL*PNEGVVCLE*LQRGHCGDTEG 187
Query: 131 GGLYLAQCIVCSRS*TATECCYTEVLLLWQW*SWNTN*IQEPK 3
GGL+LA+C +CS S*TA CCYTE LLLW+W*SWNTN +Q+ K
Sbjct: 188 GGLHLAKCFLCSCS*TAPGCCYTEFLLLWKW*SWNTNQVQKSK 316
Score = 143 bits (307), Expect = 6e-034
Identities = 64/103 (62%), Positives = 77/103 (74%)
Frame = +2 / -1
Query: 2 LWVPEFNWCSTTTTAREVELLCSSIL*LFKNGNIRCIEPGKVLHLLYLHSDPSVVIHAKP 181
LW+ E +WCST TT+REVE+LCSSIL LFKN NI I PG+VLHLLYLH+ PSVVI KP
Sbjct: 317 LWISELDWCSTITTSREVEILCSSILELFKNRNIGSI*PGEVLHLLYLHNGPSVVIQGKP 138
Query: 182 CLHRSIVQLISH*VKNNLVRVPRVYSRRINNN*NSKDVV*EDT 310
H IV L+ H +KNNL RV + S RI++N +S DVV E+T
Sbjct: 137 RPHWVIVDLVGHQMKNNLFRVL*IQSCRIDDNRDSNDVVRENT 9
Score = 103 bits (219), Expect = 9e-022
Identities = 47/67 (70%), Positives = 51/67 (76%)
Frame = -3 / +1
Query: 201 TMLR*RHGLA*MTTEGSLWRYKRWRTLPGSMHRMFPFLNSYRMLLHRSSTSLAVVVVEHQ 22
TM +* GL *MTTEG LWRY+RWRT PG M MF FLNS RMLLHR STSL VV+VEHQ
Sbjct: 118 TMTQ*GRGLP*MTTEGPLWRYRRWRTSPG*MLPMFLFLNSSRMLLHRISTSLEVVIVEHQ 297
Query: 21 LNSGTQS 1
+S QS
Sbjct: 298 SSSEIQS 318
>gb|BJ463762.1|BJ463762 BJ463762 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g14 5', mRNA sequence
Length = 500
Score = 221 bits (477), Expect = 2e-057
Identities = 86/103 (83%), Positives = 96/103 (93%)
Frame = -2 / +2
Query: 310 CVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMNDYRGVTVEIQKV 131
CVFSDNI+AVSVV NST +NS+HP+K+VFHLVTDE+NY PM+AWF +NDYRG VEIQKV
Sbjct: 8 CVFSDNIIAVSVVXNSTTLNSKHPEKIVFHLVTDEVNYDPMRAWFALNDYRGAIVEIQKV 187
Query: 130 EDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRGTPIKFRNPK 2
EDFTWLNASYVPVLKQLQ+AATQ FYFSGSG+RGTPIKFRNPK
Sbjct: 188 EDFTWLNASYVPVLKQLQDAATQNFYFSGSGNRGTPIKFRNPK 316
Score = 182 bits (392), Expect = 1e-045
Identities = 82/103 (79%), Positives = 85/103 (82%)
Frame = +3 / -3
Query: 3 FGFLNLIGVPRLPLPEK*NFCVAAFCSCLRTGTYDALSQVKSSTFCISTVTPL*SFMPNH 182
FGFLNLIGVPRLPLPEK* FCVAA SCLRTGT +A SQVKSSTFCIST+ PL*SF NH
Sbjct: 315 FGFLNLIGVPRLPLPEK*KFCVAASWSCLRTGT*EAFSQVKSSTFCISTMAPL*SFKANH 136
Query: 183 AFIGA*FNSSVTK*KTTLSGCLEFIAVELTTTETARMLSEKTQ 311
A IG+* SSVTK*KT SGC EF VEL TTETA MLSEKTQ
Sbjct: 135 ALIGS*LTSSVTK*KTIFSGCFEFRVVELXTTETAMMLSEKTQ 7
Score = 155 bits (334), Expect = 1e-037
Identities = 63/103 (61%), Positives = 76/103 (73%)
Frame = -1 / +1
Query: 311 LCLLRQHPCCFSCC*FYGYKLEAP*QGCFSLSD**VELCSDEGMVWHE*LQRGHCGDTKG 132
LC L QH CC C FY + +AP*+ CFS D +L +EG+V E*LQRGHCGDT+G
Sbjct: 7 LCFLGQHHCCLCCXQFYNSEFKAP*KDCFSFGDRRGQL*PNEGVVCLE*LQRGHCGDTEG 186
Query: 131 GGLYLAQCIVCSRS*TATECCYTEVLLLWQW*SWNTN*IQEPK 3
GGL+LA+C +CS S*TA CCYTE LLLW+W*SWNTN +Q+ K
Sbjct: 187 GGLHLAKCFLCSCS*TAPGCCYTEFLLLWKW*SWNTNQVQKSK 315
Score = 142 bits (305), Expect = 1e-033
Identities = 64/103 (62%), Positives = 76/103 (73%)
Frame = +2 / -2
Query: 2 LWVPEFNWCSTTTTAREVELLCSSIL*LFKNGNIRCIEPGKVLHLLYLHSDPSVVIHAKP 181
LW+ E +WCST TT+REVE+LCSSIL LFKN NI I PG+VLHLLYLH+ PSVVI KP
Sbjct: 316 LWISELDWCSTITTSREVEILCSSILELFKNRNIGSI*PGEVLHLLYLHNGPSVVIQGKP 137
Query: 182 CLHRSIVQLISH*VKNNLVRVPRVYSRRINNN*NSKDVV*EDT 310
H IV L+ H +KNNL RV + S RI +N +S DVV E+T
Sbjct: 136 RPHWVIVDLVGHQMKNNLFRVL*IQSCRIXDNRDSNDVVRENT 8
Score = 103 bits (219), Expect = 9e-022
Identities = 47/67 (70%), Positives = 51/67 (76%)
Frame = -3 / +3
Query: 201 TMLR*RHGLA*MTTEGSLWRYKRWRTLPGSMHRMFPFLNSYRMLLHRSSTSLAVVVVEHQ 22
TM +* GL *MTTEG LWRY+RWRT PG M MF FLNS RMLLHR STSL VV+VEHQ
Sbjct: 117 TMTQ*GRGLP*MTTEGPLWRYRRWRTSPG*MLPMFLFLNSSRMLLHRISTSLEVVIVEHQ 296
Query: 21 LNSGTQS 1
+S QS
Sbjct: 297 SSSEIQS 317
>gb|BQ471670.1|BQ471670 HV03B24r HV Hordeum vulgare subsp. vulgare cDNA clone HV03B24
5-PRIME, mRNA sequence
Length = 403
Score = 204 bits (440), Expect = 3e-052
Identities = 83/106 (78%), Positives = 91/106 (85%)
Frame = -2 / +3
Query: 514 SLXEKSKVXXXKXTXXXXIAAEELPKGLYCLGVRLTMXWFKSPELQRKFSDRSPAVQSNL 335
SL EKSK K T IAAEELPKGLYCLGVRLTM WF S ELQRKF DRSPAVQSNL
Sbjct: 81 SLEEKSKAEADKSTKYGQIAAEELPKGLYCLGVRLTMEWFNSAELQRKFLDRSPAVQSNL 260
Query: 334 RDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNY 197
RDNSLYH+CVFSDNI+AVSVV+NST +NS+HP+K+VFHLVTDE+NY
Sbjct: 261 RDNSLYHYCVFSDNIIAVSVVINSTTLNSKHPEKIVFHLVTDEVNY 398
Score = 143 bits (306), Expect = 9e-034
Identities = 62/101 (61%), Positives = 67/101 (66%)
Frame = -1 / +2
Query: 515 VPRXEVES*XXEXHXXXXDCC*GAPKGTLLPWCPVNHGXVQESRASEEVFG*EPSSAEQS 336
VP EV+ H D C GAPKG LLPWCPVNHG VQ+ RASEEV G*EP SAEQS
Sbjct: 80 VPGGEVQGRGG*EHKVWPDRCRGAPKGALLPWCPVNHGMVQQCRASEEVLG*EPCSAEQS 259
Query: 335 EG*QPLSFLCLLRQHPCCFSCC*FYGYKLEAP*QGCFSLSD 213
EG* PLS LC L QH CC C FY + +AP*+ CFS D
Sbjct: 260 EG**PLSLLCFLGQHHCCLCCHQFYNSEFKAP*KDCFSFGD 382
Score = 139 bits (298), Expect = 1e-032
Identities = 63/106 (59%), Positives = 77/106 (72%)
Frame = +2 / -3
Query: 197 IVQLISH*VKNNLVRVPRVYSRRINNN*NSKDVV*EDTKMIEAVIPQIALHCWAPIRKLP 376
IV L+ H +KNNL RV + S RI++N +S DVV E+T +I+A+IPQIALHC API++LP
Sbjct: 398 IVDLVGHQMKNNLFRVL*IQSCRIDDNRDSNDVVRENTVVIKAIIPQIALHCRAPIQELP 219
Query: 377 LKLGTLEPXHG*PDTKAIKSLWELLSSNXXXXCAFXXXNFRLLX*G 514
LKLGT+EP HG*PDTKAIK LWELL S+ CA LL G
Sbjct: 218 LKLGTVEPFHG*PDTKAIKPLWELLGSDLAILCALIRLGLGLLLQG 81
Score = 129 bits (277), Expect = 9e-030
Identities = 55/84 (65%), Positives = 63/84 (75%)
Frame = +1 / -2
Query: 226 KQPCQGASSL*P*N*QQLKQQGCCLRRHKNDRGCYPSDCSALLGSYPKTSSEARDS*TXP 405
KQ QGA + *N* Q +QQ CC R+H +D+G YPSDCSAL GSYP+TSSEAR *T P
Sbjct: 369 KQSFQGALNSEL*N**QQRQQ*CCPRKHSSDKGYYPSDCSALQGSYPRTSSEARHC*TIP 190
Query: 406 WLTGHQGNKVPLGAPQQQSXXXXC 477
WLTGHQGNK PLGAP+Q+S C
Sbjct: 189 WLTGHQGNKAPLGAPRQRSGHTLC 118
>gb|AL450785.1|AL450785 AL450785 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04D14u 5', mRNA sequence
Length = 296
Score = 131 bits (281), Expect(2) = 2e-039
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = -2 / +3
Query: 343 SNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMND 164
SNLRDNSLYH+CVFS NI AVSVV+NST +NS+HP+K+VFHLVTDE+NY PM+AWF +ND
Sbjct: 6 SNLRDNSLYHYCVFSXNIXAVSVVINSTTLNSKHPEKIVFHLVTDEVNYDPMRAWFALND 185
Query: 163 YRGVTV 146
RG V
Sbjct: 186 XRGAIV 203
Score = 86.3 bits (182), Expect(3) = 2e-021
Identities = 42/59 (71%), Positives = 44/59 (74%)
Frame = +3 / -2
Query: 147 TVTPL*SFMPNHAFIGA*FNSSVTK*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 323
T+ PL*SF NHA IG+* SSVTK*KT SGC EF VEL TTETA ML EKTQ **R
Sbjct: 202 TMAPL*SFKANHALIGS*LTSSVTK*KTIFSGCFEFRVVELMTTETAXMLXEKTQ***R 26
Score = 49.2 bits (101), Expect(2) = 2e-039
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -2 / +2
Query: 160 RGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKF 56
RG + ++ DFTWLNASYVPVLKQL +AA +F
Sbjct: 191 RGHCGKYRRWXDFTWLNASYVPVLKQLXDAAYTEF 295
Score = 31.8 bits (63), Expect(3) = 2e-021
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3 / -3
Query: 69 AAFCSCLRTGTYDALSQVKS 128
AA SCLRTGT +A +QVKS
Sbjct: 282 AASWSCLRTGT*EAFNQVKS 223
Score = 18.5 bits (34), Expect(3) = 2e-021
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3 / -1
Query: 111 LSQVKSSTFCIS 146
L++ STFCIS
Sbjct: 239 LTR*SXSTFCIS 204
>gb|BU973760.1|BU973760 HB25O06r BC Hordeum vulgare subsp. vulgare cDNA clone HB25O06
5-PRIME, mRNA sequence
Length = 563
Score = 136 bits (291), Expect = 1e-031
Identities = 50/97 (51%), Positives = 73/97 (75%)
Frame = -2 / +1
Query: 340 NLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMNDY 161
NL + LYH+ +FSDN+LA SVVVNST +N++ P+K VFHLVTD+LN+ M WF +N
Sbjct: 58 NLENPELYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPP 237
Query: 160 RGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYF 50
T+ ++ V++F WLN+SY PVL+QL++ A +++YF
Sbjct: 238 GKATIHVENVDEFKWLNSSYCPVLRQLESVAMKEYYF 348
>gb|BU995595.1|BU995595 HM10M02r HM Hordeum vulgare subsp. vulgare cDNA clone HM10M02
5-PRIME, mRNA sequence
Length = 657
Score = 120 bits (257), Expect(2) = 1e-030
Identities = 49/104 (47%), Positives = 68/104 (65%)
Frame = -2 / +1
Query: 337 LRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMNDYR 158
L D +L+H+ +FSDN+LA SVVV S NS+ P K VFH+VTD +N M+ + D +
Sbjct: 292 LEDPALFHYAIFSDNVLAASVVVRSCVANSQDPSKHVFHVVTDRMNLGAMQVIIRLMDLQ 471
Query: 157 GVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRGT 26
G E++ ED+ +LN+SYVPVL+QL++A QKFYF T
Sbjct: 472 GAHYEVKAYEDYKFLNSSYVPVLRQLESANLQKFYFENKLENAT 603
Score = 31.8 bits (63), Expect(2) = 1e-030
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2 / +1
Query: 460 IAAEELPKGLYCLGVRLTMXWFKSPE 383
IAA+ +PK L+CL VRLT P+
Sbjct: 181 IAAKSIPKPLHCLAVRLTAERIALPD 258
>gb|BF266558.3|BF266558 HV_CEa0015H07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0015H07f, mRNA sequence
Length = 767
Score = 120 bits (257), Expect = 5e-027
Identities = 49/104 (47%), Positives = 68/104 (65%)
Frame = -2 / +3
Query: 337 LRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMNDYR 158
L D +L+H+ +FSDN+LA SVVV S NS+ P K VFH+VTD +N M+ + D +
Sbjct: 72 LEDPALFHYAIFSDNVLAASVVVRSCVANSQDPSKHVFHVVTDRMNLGAMQVIIRLMDLQ 251
Query: 157 GVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRGT 26
G E++ ED+ +LN+SYVPVL+QL++A QKFYF T
Sbjct: 252 GAHYEVKAYEDYKFLNSSYVPVLRQLESANLQKFYFENKLENAT 383
>gb|BU988833.1|BU988833 HF18N17r HF Hordeum vulgare subsp. vulgare cDNA clone HF18N17
5-PRIME, mRNA sequence
Length = 610
Score = 91.8 bits (194), Expect(2) = 4e-022
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = -2 / +1
Query: 355 PAVQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWF 176
P + L DNS +HF + SDNILA SVVV ST ++ P+++VFH++TD+ Y M +WF
Sbjct: 361 PELVPRLSDNSYFHFVLASDNILAASVVVRSTVRSALKPERIVFHVITDKKTYPAMHSWF 540
Query: 175 GMNDYRGVTVEIQKVEDFTWL 113
+N +E++ V F WL
Sbjct: 541 ALNPLYPAIIEVKGVHQFEWL 603
Score = 31.8 bits (63), Expect(2) = 4e-022
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -2 / +1
Query: 457 AAEELPKGLYCLGVRLT 407
AA +PKGLYCL +RLT
Sbjct: 265 AAIAIPKGLYCLSLRLT 315
>gb|CA012566.1|CA012566 HT05M19r HT Hordeum vulgare subsp. vulgare cDNA clone HT05M19
5-PRIME, mRNA sequence
Length = 352
Score = 104 bits (221), Expect(2) = 7e-022
Identities = 36/80 (45%), Positives = 59/80 (73%)
Frame = -2 / +1
Query: 301 SDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMNDYRGVTVEIQKVEDF 122
+DN+LA SVVVNST N+ HP ++VFH+VTD +N+ M WF +ND++G TVE+ +++F
Sbjct: 10 ADNVLATSVVVNSTVSNANHPQQLVFHVVTDRINFGAMSTWFLINDFKGCTVEVHCIDEF 189
Query: 121 TWLNASYVPVLKQLQNAATQ 62
+W NA+ ++++L + T+
Sbjct: 190 SWFNATASSLVRRLSDMETK 249
Score = 18.0 bits (33), Expect(2) = 7e-022
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -2 / +1
Query: 22 IKFRNPK 2
IKF NPK
Sbjct: 286 IKFHNPK 306
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 217,760,670
Number of Sequences: 312970
Number of extensions: 2945403
Number of successful extensions: 53118
Number of sequences better than 1.0e-020: 13
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5170291159
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)