TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.4
(591 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. v... 120 3e-030
gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. v... 120 3e-030
gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. v... 120 3e-030
gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. v... 120 3e-030
gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. v... 120 3e-030
gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA li... 120 3e-030
gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. v... 120 3e-030
gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. v... 120 3e-030
gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, n... 120 3e-030
gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. v... 120 3e-030
gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. v... 120 3e-030
gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA li... 120 3e-030
gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, n... 120 3e-030
gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. v... 120 3e-030
gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, n... 120 3e-030
gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA li... 120 3e-030
gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. v... 120 3e-030
gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. v... 120 3e-030
gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. v... 120 3e-030
gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. v... 113 2e-028
gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. v... 115 5e-028
gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. v... 120 8e-027
gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. v... 106 3e-026
gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthe... 98 4e-026
gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike... 105 6e-026
gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. v... 114 4e-025
gb|BU983139.1|BU983139 HA28K22r HA Hordeum vulgare subsp. v... 100 2e-024
gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA,... 91 1e-023
gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. v... 108 3e-023
gb|CA005707.1|CA005707 HU08P16u HU Hordeum vulgare subsp. v... 90 3e-021
>gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. vulgare cDNA clone HU09L19
5-PRIME, mRNA sequence
Length = 346
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +2
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 86 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 247
Score = 100 bits (213), Expect(2) = 3e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 246 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 85
Score = 30.9 bits (61), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 185 YCGRRVPSGFQC 150
YCG+ VP GFQC
Sbjct: 302 YCGKNVPDGFQC 337
Score = 19.9 bits (37), Expect(2) = 3e-021
Identities = 5/6 (83%), Positives = 5/6 (83%)
Frame = +1 / -2
Query: 151 HWKPDG 168
HWKP G
Sbjct: 336 HWKPSG 319
>gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08H11
5-PRIME, mRNA sequence
Length = 654
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 64 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 225
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 224 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 63
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 280 YCGKNVPAGFQC 315
>gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. vulgare cDNA clone HI05E11
5-PRIME, mRNA sequence
Length = 642
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 22 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 183
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 182 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 21
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 238 YCGKNVPAGFQC 273
>gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. vulgare cDNA clone HU02O01
5-PRIME, mRNA sequence
Length = 629
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +2
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 65 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 226
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -3
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 225 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 64
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +2
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 281 YCGKNVPAGFQC 316
>gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. vulgare cDNA clone HF04J15
5-PRIME, mRNA sequence
Length = 626
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 18 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 179
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 178 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 17
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 234 YCGKNVPAGFQC 269
>gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33k08 5', mRNA sequence
Length = 604
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 45 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 206
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 261 YCGKNVPAGFQC 296
>gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. vulgare cDNA clone HU13P20
5-PRIME, mRNA sequence
Length = 597
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 142 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 303
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 302 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 141
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 358 YCGKNVPAGFQC 393
>gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. vulgare cDNA clone HU01E09
5-PRIME, mRNA sequence
Length = 592
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 21 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 182
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -1
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 181 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 20
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 237 YCGKNVPAGFQC 272
>gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_C11 5', mRNA sequence
Length = 578
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +2
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 11 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 172
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +2
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 227 YCGKNVPAGFQC 262
>gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. vulgare cDNA clone HF22D02
5-PRIME, mRNA sequence
Length = 578
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 13 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 174
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -1
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 173 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 12
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 229 YCGKNVPAGFQC 264
>gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. vulgare cDNA clone HF24L02
5-PRIME, mRNA sequence
Length = 577
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 13 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 174
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -3
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 173 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 12
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 229 YCGKNVPAGFQC 264
>gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33k08 3', mRNA sequence
Length = 568
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / -1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 535 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 374
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / -1
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 319 YCGKNVPAGFQC 284
>gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_P01 5', mRNA sequence
Length = 551
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 120 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 281
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 336 YCGKNVPAGFQC 371
>gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. vulgare cDNA clone HM06C01
5-PRIME, mRNA sequence
Length = 551
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 64 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 225
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -1
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 224 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 63
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 280 YCGKNVPAGFQC 315
>gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_L21 5', mRNA sequence
Length = 518
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 12 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 173
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 228 YCGKNVPAGFQC 263
>gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c02 5', mRNA sequence
Length = 501
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 40 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 201
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 256 YCGKNVPAGFQC 291
>gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. vulgare cDNA clone HS18O20
5-PRIME, mRNA sequence
Length = 468
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 72 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 233
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -3
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 232 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 71
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 288 YCGKNVPAGFQC 323
>gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. vulgare cDNA clone HS17G12
5-PRIME, mRNA sequence
Length = 455
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 57 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 218
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 217 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 56
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 273 YCGKNVPAGFQC 308
>gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. vulgare cDNA clone HS18K24
5-PRIME, mRNA sequence
Length = 408
Score = 120 bits (256), Expect(2) = 3e-030
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 19 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 180
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 179 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 18
Score = 31.3 bits (62), Expect(2) = 3e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 235 YCGKNVPAGFQC 270
>gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08H11
3-PRIME, mRNA sequence
Length = 620
Score = 113 bits (242), Expect(2) = 2e-028
Identities = 44/52 (84%), Positives = 48/52 (92%)
Frame = -2 / -2
Query: 395 PVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
P+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 619 PIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 464
Score = 31.3 bits (62), Expect(2) = 2e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / -2
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 409 YCGKNVPAGFQC 374
>gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. vulgare cDNA clone HV07D21
5-PRIME, mRNA sequence
Length = 440
Score = 115 bits (246), Expect(2) = 5e-028
Identities = 44/54 (81%), Positives = 48/54 (88%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DA KLGVCAN+LNGLIN LGTPP+ PCCT IQGLADLEAAVCLCT L+A
Sbjct: 57 RCPIDAXKLGVCANVLNGLINLQLGTPPKKPCCTXIQGLADLEAAVCLCTALKA 218
Score = 28.1 bits (55), Expect(2) = 5e-028
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+ FQC
Sbjct: 273 YCGKNVPAXFQC 308
>gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. vulgare cDNA clone HS17E06
5-PRIME, mRNA sequence
Length = 266
Score = 120 bits (256), Expect = 8e-027
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 39 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 200
Score = 100 bits (213), Expect = 7e-021
Identities = 43/54 (79%), Positives = 43/54 (79%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQR 402
AL VQRHTAASRSASPWISVQHG GGVP LISP S LAHTPSFSAS G R
Sbjct: 199 ALSAVQRHTAASRSASPWISVQHGFFGGVPSCRLISPLSTLAHTPSFSASIGHR 38
>gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. vulgare cDNA clone HU01E09
3-PRIME, mRNA sequence
Length = 554
Score = 106 bits (226), Expect(2) = 3e-026
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = -2 / -3
Query: 386 ALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
ALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 552 ALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 406
Score = 31.3 bits (62), Expect(2) = 3e-026
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / -3
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 351 YCGKNVPAGFQC 316
>gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_O08 5', mRNA sequence
Length = 393
Score = 97.7 bits (207), Expect(3) = 4e-026
Identities = 37/43 (86%), Positives = 40/43 (93%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLE 273
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADLE
Sbjct: 111 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLE 239
Score = 31.3 bits (62), Expect(3) = 4e-026
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / +2
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 326 YCGKNVPAGFQC 361
Score = 25.4 bits (49), Expect(3) = 4e-026
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / +2
Query: 272 AAVCLCTVLRA 240
AAVCLCT L+A
Sbjct: 239 AAVCLCTALKA 271
>gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018L24f, mRNA sequence
Length = 887
Score = 105 bits (225), Expect(2) = 6e-026
Identities = 40/52 (76%), Positives = 47/52 (90%)
Frame = -2 / -1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVL 246
+CP++ALKLGVCAN+L GL+N TLG+PP PCCTLIQGLADLEAA+CLCT L
Sbjct: 668 QCPLNALKLGVCANVLGGLLNLTLGSPPVQPCCTLIQGLADLEAALCLCTTL 513
Score = 30.9 bits (61), Expect(2) = 6e-026
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / -1
Query: 182 CGRRVPSGFQC 150
CGR VPSGFQC
Sbjct: 449 CGRNVPSGFQC 417
>gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. vulgare cDNA clone HL02O21
3-PRIME, mRNA sequence
Length = 575
Score = 114 bits (244), Expect = 4e-025
Identities = 44/52 (84%), Positives = 47/52 (90%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVL 246
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL AAVCLCT L
Sbjct: 420 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLXAAVCLCTAL 575
>gb|BU983139.1|BU983139 HA28K22r HA Hordeum vulgare subsp. vulgare cDNA clone HA28K22
5-PRIME, mRNA sequence
Length = 559
Score = 100 bits (214), Expect(2) = 2e-024
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = -2 / +3
Query: 395 PVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVL 246
P+DALKLGVCAN+L GL+N TLG+PP PCCTLIQGLADLEA +CLCT L
Sbjct: 42 PLDALKLGVCANVLGGLLNLTLGSPPVQPCCTLIQGLADLEAFLCLCTTL 191
Score = 30.9 bits (61), Expect(2) = 2e-024
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 182 CGRRVPSGFQC 150
CGR VPSGFQC
Sbjct: 255 CGRNVPSGFQC 287
>gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ001_P18 5', mRNA sequence
Length = 692
Score = 91.3 bits (193), Expect(3) = 1e-023
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = -2 / +2
Query: 377 LGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVL 246
LGVCAN+L GL+N TLG+PP PCCTLIQGLADLEAA+CLCT L
Sbjct: 305 LGVCANVLGGLLNLTLGSPPVQPCCTLIQGLADLEAALCLCTTL 436
Score = 30.9 bits (61), Expect(3) = 1e-023
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / +2
Query: 182 CGRRVPSGFQC 150
CGR VPSGFQC
Sbjct: 500 CGRNVPSGFQC 532
Score = 24.4 bits (47), Expect(3) = 1e-023
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / +1
Query: 401 RCPVDALKLG 372
+CP+DALKLG
Sbjct: 280 QCPLDALKLG 309
>gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42J06
5-PRIME, mRNA sequence
Length = 373
Score = 108 bits (230), Expect = 3e-023
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVL 246
+CP+DALKLGVCAN+L GL+N TLG+PP PCCTLIQGLADLEAA+CLCT L
Sbjct: 166 QCPLDALKLGVCANVLGGLLNLTLGSPPVQPCCTLIQGLADLEAALCLCTTL 321
>gb|CA005707.1|CA005707 HU08P16u HU Hordeum vulgare subsp. vulgare cDNA clone HU08P16
3-PRIME, mRNA sequence
Length = 535
Score = 90.0 bits (190), Expect(2) = 3e-021
Identities = 35/42 (83%), Positives = 38/42 (90%)
Frame = -2 / -1
Query: 365 ANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
AN+LNGLIN LGTPP+ PCCTLIQGLADLEAAVCLCT L+A
Sbjct: 535 ANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 410
Score = 31.3 bits (62), Expect(2) = 3e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / -1
Query: 185 YCGRRVPSGFQC 150
YCG+ VP+GFQC
Sbjct: 355 YCGKNVPAGFQC 320
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 123,196,598
Number of Sequences: 312970
Number of extensions: 1448119
Number of successful extensions: 51150
Number of sequences better than 1.0e-020: 35
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6150422805
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)