TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.1
(989 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. v... 112 7e-028
gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. v... 112 7e-028
gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. v... 112 7e-028
gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. v... 112 7e-028
gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA li... 112 7e-028
gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. v... 112 7e-028
gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. v... 112 7e-028
gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, n... 112 7e-028
gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. v... 112 7e-028
gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. v... 112 7e-028
gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA li... 112 7e-028
gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, n... 112 7e-028
gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. v... 112 7e-028
gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, n... 112 7e-028
gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA li... 112 7e-028
gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. v... 112 7e-028
gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. v... 112 7e-028
gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. v... 112 7e-028
gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. v... 112 1e-027
gb|CV055316.1|CV055316 BNEL119b9 Barley EST endosperm libra... 81 5e-027
gb|BU990569.1|BU990569 HF25H01r HF Hordeum vulgare subsp. v... 81 5e-027
gb|CV059458.1|CV059458 BNEL48d12 Barley EST endosperm libra... 81 5e-027
gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. v... 106 6e-026
gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. v... 108 2e-025
gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. v... 112 2e-024
gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike... 100 9e-024
gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. v... 99 9e-024
gb|AJ461800.1|AJ461800 AJ461800 S00002 Hordeum vulgare subs... 81 9e-024
gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. v... 109 3e-023
gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthe... 96 8e-023
gb|BU983139.1|BU983139 HA28K22r HA Hordeum vulgare subsp. v... 95 3e-022
gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA,... 84 2e-021
gb|BU988421.1|BU988421 HF17J12r HF Hordeum vulgare subsp. v... 81 3e-021
gb|CV060491.1|CV060491 BNEL58g11 Barley EST endosperm libra... 81 4e-021
gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. v... 101 5e-021
>gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08H11
5-PRIME, mRNA sequence
Length = 654
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +1
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 64 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 225
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 280 YCGKNVPAGFQC 315
>gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. vulgare cDNA clone HI05E11
5-PRIME, mRNA sequence
Length = 642
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +1
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 22 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 183
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 238 YCGKNVPAGFQC 273
>gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. vulgare cDNA clone HU02O01
5-PRIME, mRNA sequence
Length = 629
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +2
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 65 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 226
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 281 YCGKNVPAGFQC 316
>gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. vulgare cDNA clone HF04J15
5-PRIME, mRNA sequence
Length = 626
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 18 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 179
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 234 YCGKNVPAGFQC 269
>gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33k08 5', mRNA sequence
Length = 604
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 45 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 206
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 261 YCGKNVPAGFQC 296
>gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. vulgare cDNA clone HU13P20
5-PRIME, mRNA sequence
Length = 597
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +1
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 142 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 303
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 358 YCGKNVPAGFQC 393
>gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. vulgare cDNA clone HU01E09
5-PRIME, mRNA sequence
Length = 592
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 21 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 182
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 237 YCGKNVPAGFQC 272
>gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_C11 5', mRNA sequence
Length = 578
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +2
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 11 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 172
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 227 YCGKNVPAGFQC 262
>gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. vulgare cDNA clone HF22D02
5-PRIME, mRNA sequence
Length = 578
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +1
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 13 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 174
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 229 YCGKNVPAGFQC 264
>gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. vulgare cDNA clone HF24L02
5-PRIME, mRNA sequence
Length = 577
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +1
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 13 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 174
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 229 YCGKNVPAGFQC 264
>gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33k08 3', mRNA sequence
Length = 568
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / -1
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 535 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 374
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / -1
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 319 YCGKNVPAGFQC 284
>gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_P01 5', mRNA sequence
Length = 551
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 120 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 281
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 336 YCGKNVPAGFQC 371
>gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. vulgare cDNA clone HM06C01
5-PRIME, mRNA sequence
Length = 551
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +1
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 64 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 225
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 280 YCGKNVPAGFQC 315
>gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_L21 5', mRNA sequence
Length = 518
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 12 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 173
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 228 YCGKNVPAGFQC 263
>gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c02 5', mRNA sequence
Length = 501
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +1
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 40 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 201
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 256 YCGKNVPAGFQC 291
>gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. vulgare cDNA clone HS18O20
5-PRIME, mRNA sequence
Length = 468
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 72 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 233
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 288 YCGKNVPAGFQC 323
>gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. vulgare cDNA clone HS17G12
5-PRIME, mRNA sequence
Length = 455
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 57 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 218
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 273 YCGKNVPAGFQC 308
>gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. vulgare cDNA clone HS18K24
5-PRIME, mRNA sequence
Length = 408
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +1
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 19 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 180
Score = 31.3 bits (62), Expect(2) = 7e-028
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 235 YCGKNVPAGFQC 270
>gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. vulgare cDNA clone HU09L19
5-PRIME, mRNA sequence
Length = 346
Score = 112 bits (240), Expect(2) = 1e-027
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +2
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 86 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 247
Score = 30.9 bits (61), Expect(2) = 1e-027
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 308 YCGRRVPSGFQC 343
YCG+ VP GFQC
Sbjct: 302 YCGKNVPDGFQC 337
>gb|CV055316.1|CV055316 BNEL119b9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL119b9 5' similar to
OSJNBa0038J17.19, mRNA sequence
Length = 668
Score = 81.3 bits (171), Expect(2) = 5e-027
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +3 / -2
Query: 567 MQEFPDWQTSALSDGLHFTPVGNKILFEEVVKTLET 674
MQ+FPDWQTSALSDGLHFTP GNKILF+EV+KTLE+
Sbjct: 520 MQQFPDWQTSALSDGLHFTPSGNKILFDEVLKTLES 413
Score = 60.2 bits (125), Expect(2) = 5e-027
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +3 / -2
Query: 675 SIGFSQERLPSDLPLFHEIDPKDPMKAF 758
S+GFSQ L SDLPLFHEIDPKDP+KAF
Sbjct: 415 SVGFSQHSLRSDLPLFHEIDPKDPLKAF 332
>gb|BU990569.1|BU990569 HF25H01r HF Hordeum vulgare subsp. vulgare cDNA clone HF25H01
5-PRIME, mRNA sequence
Length = 635
Score = 81.3 bits (171), Expect(2) = 5e-027
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +3 / +2
Query: 567 MQEFPDWQTSALSDGLHFTPVGNKILFEEVVKTLET 674
MQ+FPDWQTSALSDGLHFTP GNKILF+EV+KTLE+
Sbjct: 332 MQQFPDWQTSALSDGLHFTPSGNKILFDEVLKTLES 439
Score = 60.2 bits (125), Expect(2) = 5e-027
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +3 / +2
Query: 675 SIGFSQERLPSDLPLFHEIDPKDPMKAF 758
S+GFSQ L SDLPLFHEIDPKDP+KAF
Sbjct: 437 SVGFSQHSLRSDLPLFHEIDPKDPLKAF 520
>gb|CV059458.1|CV059458 BNEL48d12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL48d12 5' similar to
OSJNBa0038J17.19, mRNA sequence
Length = 569
Score = 81.3 bits (171), Expect(2) = 5e-027
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +3 / +1
Query: 567 MQEFPDWQTSALSDGLHFTPVGNKILFEEVVKTLET 674
MQ+FPDWQTSALSDGLHFTP GNKILF+EV+KTLE+
Sbjct: 199 MQQFPDWQTSALSDGLHFTPSGNKILFDEVLKTLES 306
Score = 60.2 bits (125), Expect(2) = 5e-027
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +3 / +1
Query: 675 SIGFSQERLPSDLPLFHEIDPKDPMKAF 758
S+GFSQ L SDLPLFHEIDPKDP+KAF
Sbjct: 304 SVGFSQHSLRSDLPLFHEIDPKDPLKAF 387
>gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08H11
3-PRIME, mRNA sequence
Length = 620
Score = 106 bits (226), Expect(2) = 6e-026
Identities = 42/52 (80%), Positives = 47/52 (90%)
Frame = +2 / -2
Query: 98 PVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
P+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 619 PIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 464
Score = 31.3 bits (62), Expect(2) = 6e-026
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / -2
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 409 YCGKNVPAGFQC 374
>gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. vulgare cDNA clone HV07D21
5-PRIME, mRNA sequence
Length = 440
Score = 108 bits (230), Expect(2) = 2e-025
Identities = 42/54 (77%), Positives = 47/54 (87%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DA KLGVCAN+LNGLIN LGTPP+ PCCT IQGLADL+AAV LCT L+A
Sbjct: 57 RCPIDAXKLGVCANVLNGLINLQLGTPPKKPCCTXIQGLADLEAAVCLCTALKA 218
Score = 28.1 bits (55), Expect(2) = 2e-025
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+ FQC
Sbjct: 273 YCGKNVPAXFQC 308
>gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. vulgare cDNA clone HS17E06
5-PRIME, mRNA sequence
Length = 266
Score = 112 bits (240), Expect = 2e-024
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 39 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 200
>gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018L24f, mRNA sequence
Length = 887
Score = 99.6 bits (211), Expect(2) = 9e-024
Identities = 39/54 (72%), Positives = 47/54 (87%)
Frame = +2 / -1
Query: 86 SGRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVL 247
S +CP++ALKLGVCAN+L GL+N TLG+PP PCCTLIQGLADL+AA+ LCT L
Sbjct: 674 STQCPLNALKLGVCANVLGGLLNLTLGSPPVQPCCTLIQGLADLEAALCLCTTL 513
Score = 30.9 bits (61), Expect(2) = 9e-024
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 311 CGRRVPSGFQC 343
CGR VPSGFQC
Sbjct: 449 CGRNVPSGFQC 417
>gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. vulgare cDNA clone HU01E09
3-PRIME, mRNA sequence
Length = 554
Score = 99.1 bits (210), Expect(2) = 9e-024
Identities = 40/49 (81%), Positives = 44/49 (89%)
Frame = +2 / -3
Query: 107 ALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
ALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+AAV LCT L+A
Sbjct: 552 ALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKA 406
Score = 31.3 bits (62), Expect(2) = 9e-024
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 351 YCGKNVPAGFQC 316
>gb|AJ461800.1|AJ461800 AJ461800 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200044B05F1, mRNA sequence
Length = 300
Score = 81.3 bits (171), Expect(2) = 9e-024
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +3 / +2
Query: 567 MQEFPDWQTSALSDGLHFTPVGNKILFEEVVKTLET 674
MQ+FPDWQTSALSDGLHFTP GNKILF+EV+KTLE+
Sbjct: 125 MQQFPDWQTSALSDGLHFTPSGNKILFDEVLKTLES 232
Score = 49.2 bits (101), Expect(2) = 9e-024
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +3 / +2
Query: 675 SIGFSQERLPSDLPLFHEIDPKD 743
S+GFSQ L SDLPLFHEIDPKD
Sbjct: 230 SVGFSQHSLRSDLPLFHEIDPKD 298
>gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. vulgare cDNA clone HL02O21
3-PRIME, mRNA sequence
Length = 575
Score = 109 bits (232), Expect = 3e-023
Identities = 43/52 (82%), Positives = 46/52 (88%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVL 247
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL AAV LCT L
Sbjct: 420 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLXAAVCLCTAL 575
>gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_O08 5', mRNA sequence
Length = 393
Score = 95.9 bits (203), Expect(2) = 8e-023
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLK 220
RCP+DALKLGVCAN+LNGLIN LGTPP+ PCCTLIQGLADL+
Sbjct: 111 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLE 239
Score = 31.3 bits (62), Expect(2) = 8e-023
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 308 YCGRRVPSGFQC 343
YCG+ VP+GFQC
Sbjct: 326 YCGKNVPAGFQC 361
>gb|BU983139.1|BU983139 HA28K22r HA Hordeum vulgare subsp. vulgare cDNA clone HA28K22
5-PRIME, mRNA sequence
Length = 559
Score = 94.5 bits (200), Expect(2) = 3e-022
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = +2 / +3
Query: 86 SGRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVL 247
S + P+DALKLGVCAN+L GL+N TLG+PP PCCTLIQGLADL+A + LCT L
Sbjct: 30 STQSPLDALKLGVCANVLGGLLNLTLGSPPVQPCCTLIQGLADLEAFLCLCTTL 191
Score = 30.9 bits (61), Expect(2) = 3e-022
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 311 CGRRVPSGFQC 343
CGR VPSGFQC
Sbjct: 255 CGRNVPSGFQC 287
>gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ001_P18 5', mRNA sequence
Length = 692
Score = 84.0 bits (177), Expect(3) = 2e-021
Identities = 33/44 (75%), Positives = 38/44 (86%)
Frame = +2 / +2
Query: 116 LGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVL 247
LGVCAN+L GL+N TLG+PP PCCTLIQGLADL+AA+ LCT L
Sbjct: 305 LGVCANVLGGLLNLTLGSPPVQPCCTLIQGLADLEAALCLCTTL 436
Score = 30.9 bits (61), Expect(3) = 2e-021
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / +2
Query: 311 CGRRVPSGFQC 343
CGR VPSGFQC
Sbjct: 500 CGRNVPSGFQC 532
Score = 25.4 bits (49), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 86 SGRCPVDALKLG 121
S +CP+DALKLG
Sbjct: 274 STQCPLDALKLG 309
>gb|BU988421.1|BU988421 HF17J12r HF Hordeum vulgare subsp. vulgare cDNA clone HF17J12
5-PRIME, mRNA sequence
Length = 486
Score = 81.3 bits (171), Expect(2) = 3e-021
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +3 / +1
Query: 567 MQEFPDWQTSALSDGLHFTPVGNKILFEEVVKTLET 674
MQ+FPDWQTSALSDGLHFTP GNKILF+EV+KTLE+
Sbjct: 322 MQQFPDWQTSALSDGLHFTPSGNKILFDEVLKTLES 429
Score = 40.9 bits (83), Expect(2) = 3e-021
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3 / +1
Query: 675 SIGFSQERLPSDLPLFHEID 734
S+GFSQ L SDLPLFHEID
Sbjct: 427 SVGFSQHSLRSDLPLFHEID 486
>gb|CV060491.1|CV060491 BNEL58g11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL58g11 5' similar to
OSJNBa0038J17.19, mRNA sequence
Length = 661
Score = 81.3 bits (171), Expect(3) = 4e-021
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +3 / -2
Query: 567 MQEFPDWQTSALSDGLHFTPVGNKILFEEVVKTLET 674
MQ+FPDWQTSALSDGLHFTP GNKILF+EV+KTLE+
Sbjct: 522 MQQFPDWQTSALSDGLHFTPSGNKILFDEVLKTLES 415
Score = 35.4 bits (71), Expect(3) = 4e-021
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3 / -1
Query: 720 FHEIDPKDPMKAF 758
FHEIDPKDP+KAF
Sbjct: 370 FHEIDPKDPLKAF 332
Score = 22.1 bits (42), Expect(3) = 4e-021
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3 / -2
Query: 675 SIGFSQERLPSDLPLF 722
S+GFSQ L SD F
Sbjct: 417 SVGFSQHSLRSDFSSF 370
>gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42J06
5-PRIME, mRNA sequence
Length = 373
Score = 101 bits (216), Expect = 5e-021
Identities = 40/54 (74%), Positives = 47/54 (87%)
Frame = +2 / +1
Query: 86 SGRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVL 247
S +CP+DALKLGVCAN+L GL+N TLG+PP PCCTLIQGLADL+AA+ LCT L
Sbjct: 160 STQCPLDALKLGVCANVLGGLLNLTLGSPPVQPCCTLIQGLADLEAALCLCTTL 321
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 366,989,180
Number of Sequences: 312970
Number of extensions: 5653309
Number of successful extensions: 102676
Number of sequences better than 1.0e-020: 43
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 11662735703
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)