TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.1
(690 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA li... 225 2e-058
gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA li... 225 2e-058
gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA li... 225 2e-058
gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA li... 225 2e-058
gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA li... 225 2e-058
gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA li... 225 2e-058
gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. v... 225 2e-058
gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA li... 210 5e-054
gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, n... 193 1e-048
gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. v... 187 5e-047
gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed D... 174 4e-043
gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedl... 165 2e-041
gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA li... 167 6e-041
gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA li... 160 7e-039
gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA li... 144 7e-034
gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa... 144 7e-034
gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa... 144 7e-034
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 144 7e-034
gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed D... 142 2e-033
gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no... 142 2e-033
gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa... 140 8e-033
gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed D... 133 1e-030
gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA li... 127 4e-029
gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA li... 127 4e-029
gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA li... 127 4e-029
gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. v... 127 6e-029
gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. v... 126 1e-028
gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. v... 124 6e-028
gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed D... 124 6e-028
gb|BJ469981.1|BJ469981 BJ469981 K. Sato unpublished cDNA li... 122 1e-027
gb|BJ472233.1|BJ472233 BJ472233 K. Sato unpublished cDNA li... 122 1e-027
gb|BJ473277.1|BJ473277 BJ473277 K. Sato unpublished cDNA li... 122 1e-027
gb|BJ471422.1|BJ471422 BJ471422 K. Sato unpublished cDNA li... 114 6e-025
gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subs... 108 3e-023
gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA li... 105 3e-022
gb|BQ754043.1|BQ754043 EBca01_SQ002_K10_R carpel, pre-anthe... 104 7e-022
gb|CB883678.1|CB883678 HQ02P09w HQ Hordeum vulgare subsp. v... 104 7e-022
>gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 3', mRNA sequence
Length = 626
Score = 225 bits (486), Expect = 2e-058
Identities = 90/106 (84%), Positives = 99/106 (93%)
Frame = +1 / -3
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT+ DIFVCILAFMPTGWGLLL+AQA++P I + GLWGSI+ALARGYEI+MGLLLFTP
Sbjct: 531 PHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTP 352
Query: 223 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 351 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 214
Score = 145 bits (312), Expect = 2e-034
Identities = 66/106 (62%), Positives = 69/106 (65%)
Frame = -2 / +2
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL R RSFLCPPRI EICRP L AWL SI VWNSDTNGN AR A+GV
Sbjct: 215 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 394
Query: 179 XXALIEPQSPVLWITGRIAWAISSKPHPVGMKARMQTNMSSTVMPG 42
A I+P SP L I G A A S+PHPVGMKARMQTNMS VM G
Sbjct: 395 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWG 532
Score = 122 bits (261), Expect = 2e-027
Identities = 55/113 (48%), Positives = 68/113 (60%)
Frame = +3 / -2
Query: 18 HRGNPNSDPWHDGAGHICLHPCFHAHWMGFAADCPSDPACDPQDWALGLDQGSCPGLRDP 197
H +P DP HD GHI LHPC HA+ MG A A D + A+G+D GS +RD
Sbjct: 556 HHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDH 377
Query: 198 DGTSPVHAHRLPRLVPVRVGIPDQDAVQPGVQQRSADLPYPGRTQERPRDPEQ 356
G + +H R+P +VPVRV +PD DA+QPG+Q SADL PG QE P EQ
Sbjct: 376 HGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQ 218
>gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 3', mRNA sequence
Length = 678
Score = 225 bits (486), Expect = 2e-058
Identities = 90/106 (84%), Positives = 99/106 (93%)
Frame = +1 / -1
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT+ DIFVCILAFMPTGWGLLL+AQA++P I + GLWGSI+ALARGYEI+MGLLLFTP
Sbjct: 585 PHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTP 406
Query: 223 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 405 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 268
Score = 145 bits (312), Expect = 2e-034
Identities = 66/106 (62%), Positives = 69/106 (65%)
Frame = -2 / +2
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL R RSFLCPPRI EICRP L AWL SI VWNSDTNGN AR A+GV
Sbjct: 269 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 448
Query: 179 XXALIEPQSPVLWITGRIAWAISSKPHPVGMKARMQTNMSSTVMPG 42
A I+P SP L I G A A S+PHPVGMKARMQTNMS VM G
Sbjct: 449 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWG 586
Score = 122 bits (261), Expect = 2e-027
Identities = 55/113 (48%), Positives = 68/113 (60%)
Frame = +3 / -3
Query: 18 HRGNPNSDPWHDGAGHICLHPCFHAHWMGFAADCPSDPACDPQDWALGLDQGSCPGLRDP 197
H +P DP HD GHI LHPC HA+ MG A A D + A+G+D GS +RD
Sbjct: 610 HHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDH 431
Query: 198 DGTSPVHAHRLPRLVPVRVGIPDQDAVQPGVQQRSADLPYPGRTQERPRDPEQ 356
G + +H R+P +VPVRV +PD DA+QPG+Q SADL PG QE P EQ
Sbjct: 430 HGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQ 272
>gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 3', mRNA sequence
Length = 650
Score = 225 bits (486), Expect = 2e-058
Identities = 90/106 (84%), Positives = 99/106 (93%)
Frame = +1 / -3
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT+ DIFVCILAFMPTGWGLLL+AQA++P I + GLWGSI+ALARGYEI+MGLLLFTP
Sbjct: 555 PHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTP 376
Query: 223 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 375 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 238
Score = 145 bits (312), Expect = 2e-034
Identities = 66/106 (62%), Positives = 69/106 (65%)
Frame = -2 / +2
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL R RSFLCPPRI EICRP L AWL SI VWNSDTNGN AR A+GV
Sbjct: 239 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 418
Query: 179 XXALIEPQSPVLWITGRIAWAISSKPHPVGMKARMQTNMSSTVMPG 42
A I+P SP L I G A A S+PHPVGMKARMQTNMS VM G
Sbjct: 419 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWG 556
Score = 122 bits (261), Expect = 2e-027
Identities = 55/113 (48%), Positives = 68/113 (60%)
Frame = +3 / -2
Query: 18 HRGNPNSDPWHDGAGHICLHPCFHAHWMGFAADCPSDPACDPQDWALGLDQGSCPGLRDP 197
H +P DP HD GHI LHPC HA+ MG A A D + A+G+D GS +RD
Sbjct: 580 HHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDH 401
Query: 198 DGTSPVHAHRLPRLVPVRVGIPDQDAVQPGVQQRSADLPYPGRTQERPRDPEQ 356
G + +H R+P +VPVRV +PD DA+QPG+Q SADL PG QE P EQ
Sbjct: 400 HGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQ 242
>gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 3', mRNA sequence
Length = 633
Score = 225 bits (486), Expect = 2e-058
Identities = 90/106 (84%), Positives = 99/106 (93%)
Frame = +1 / -2
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT+ DIFVCILAFMPTGWGLLL+AQA++P I + GLWGSI+ALARGYEI+MGLLLFTP
Sbjct: 539 PHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTP 360
Query: 223 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 359 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 222
Score = 145 bits (312), Expect = 2e-034
Identities = 66/106 (62%), Positives = 69/106 (65%)
Frame = -2 / +1
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL R RSFLCPPRI EICRP L AWL SI VWNSDTNGN AR A+GV
Sbjct: 223 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 402
Query: 179 XXALIEPQSPVLWITGRIAWAISSKPHPVGMKARMQTNMSSTVMPG 42
A I+P SP L I G A A S+PHPVGMKARMQTNMS VM G
Sbjct: 403 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWG 540
Score = 122 bits (261), Expect = 2e-027
Identities = 55/113 (48%), Positives = 68/113 (60%)
Frame = +3 / -1
Query: 18 HRGNPNSDPWHDGAGHICLHPCFHAHWMGFAADCPSDPACDPQDWALGLDQGSCPGLRDP 197
H +P DP HD GHI LHPC HA+ MG A A D + A+G+D GS +RD
Sbjct: 564 HHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDH 385
Query: 198 DGTSPVHAHRLPRLVPVRVGIPDQDAVQPGVQQRSADLPYPGRTQERPRDPEQ 356
G + +H R+P +VPVRV +PD DA+QPG+Q SADL PG QE P EQ
Sbjct: 384 HGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQ 226
>gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 3', mRNA sequence
Length = 623
Score = 225 bits (486), Expect = 2e-058
Identities = 90/106 (84%), Positives = 99/106 (93%)
Frame = +1 / -1
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT+ DIFVCILAFMPTGWGLLL+AQA++P I + GLWGSI+ALARGYEI+MGLLLFTP
Sbjct: 533 PHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTP 354
Query: 223 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 353 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 216
Score = 145 bits (312), Expect = 2e-034
Identities = 66/106 (62%), Positives = 69/106 (65%)
Frame = -2 / +1
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL R RSFLCPPRI EICRP L AWL SI VWNSDTNGN AR A+GV
Sbjct: 217 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 396
Query: 179 XXALIEPQSPVLWITGRIAWAISSKPHPVGMKARMQTNMSSTVMPG 42
A I+P SP L I G A A S+PHPVGMKARMQTNMS VM G
Sbjct: 397 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWG 534
Score = 122 bits (261), Expect = 2e-027
Identities = 55/113 (48%), Positives = 68/113 (60%)
Frame = +3 / -3
Query: 18 HRGNPNSDPWHDGAGHICLHPCFHAHWMGFAADCPSDPACDPQDWALGLDQGSCPGLRDP 197
H +P DP HD GHI LHPC HA+ MG A A D + A+G+D GS +RD
Sbjct: 558 HHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDH 379
Query: 198 DGTSPVHAHRLPRLVPVRVGIPDQDAVQPGVQQRSADLPYPGRTQERPRDPEQ 356
G + +H R+P +VPVRV +PD DA+QPG+Q SADL PG QE P EQ
Sbjct: 378 HGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQ 220
>gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 3', mRNA sequence
Length = 623
Score = 225 bits (486), Expect = 2e-058
Identities = 90/106 (84%), Positives = 99/106 (93%)
Frame = +1 / -1
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT+ DIFVCILAFMPTGWGLLL+AQA++P I + GLWGSI+ALARGYEI+MGLLLFTP
Sbjct: 533 PHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTP 354
Query: 223 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 353 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 216
Score = 145 bits (312), Expect = 2e-034
Identities = 66/106 (62%), Positives = 69/106 (65%)
Frame = -2 / +1
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL R RSFLCPPRI EICRP L AWL SI VWNSDTNGN AR A+GV
Sbjct: 217 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 396
Query: 179 XXALIEPQSPVLWITGRIAWAISSKPHPVGMKARMQTNMSSTVMPG 42
A I+P SP L I G A A S+PHPVGMKARMQTNMS VM G
Sbjct: 397 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWG 534
Score = 122 bits (261), Expect = 2e-027
Identities = 55/113 (48%), Positives = 68/113 (60%)
Frame = +3 / -3
Query: 18 HRGNPNSDPWHDGAGHICLHPCFHAHWMGFAADCPSDPACDPQDWALGLDQGSCPGLRDP 197
H +P DP HD GHI LHPC HA+ MG A A D + A+G+D GS +RD
Sbjct: 558 HHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDH 379
Query: 198 DGTSPVHAHRLPRLVPVRVGIPDQDAVQPGVQQRSADLPYPGRTQERPRDPEQ 356
G + +H R+P +VPVRV +PD DA+QPG+Q SADL PG QE P EQ
Sbjct: 378 HGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQ 220
>gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04E05
3-PRIME, mRNA sequence
Length = 616
Score = 225 bits (486), Expect = 2e-058
Identities = 90/106 (84%), Positives = 99/106 (93%)
Frame = +1 / -1
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT+ DIFVCILAFMPTGWGLLL+AQA++P I + GLWGSI+ALARGYEI+MGLLLFTP
Sbjct: 595 PHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTP 416
Query: 223 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 415 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 278
Score = 145 bits (312), Expect = 2e-034
Identities = 66/106 (62%), Positives = 69/106 (65%)
Frame = -2 / +3
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL R RSFLCPPRI EICRP L AWL SI VWNSDTNGN AR A+GV
Sbjct: 279 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 458
Query: 179 XXALIEPQSPVLWITGRIAWAISSKPHPVGMKARMQTNMSSTVMPG 42
A I+P SP L I G A A S+PHPVGMKARMQTNMS VM G
Sbjct: 459 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWG 596
Score = 119 bits (255), Expect = 1e-026
Identities = 54/110 (49%), Positives = 67/110 (60%)
Frame = +3 / -3
Query: 27 NPNSDPWHDGAGHICLHPCFHAHWMGFAADCPSDPACDPQDWALGLDQGSCPGLRDPDGT 206
+P DP HD GHI LHPC HA+ MG A A D + A+G+D GS +RD G
Sbjct: 611 DPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGA 432
Query: 207 SPVHAHRLPRLVPVRVGIPDQDAVQPGVQQRSADLPYPGRTQERPRDPEQ 356
+ +H R+P +VPVRV +PD DA+QPG+Q SADL PG QE P EQ
Sbjct: 431 AALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQ 282
>gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 3', mRNA sequence
Length = 508
Score = 210 bits (454), Expect = 5e-054
Identities = 84/97 (86%), Positives = 92/97 (94%)
Frame = +1 / -2
Query: 70 VCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPF 249
VCILAFMPTGWGLLL+AQA++P I + GLWGSI+ALARGYEI+MGLLLFTPIAFLAWFPF
Sbjct: 507 VCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPF 328
Query: 250 VSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
VSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 327 VSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 217
Score = 135 bits (290), Expect = 2e-031
Identities = 60/97 (61%), Positives = 63/97 (64%)
Frame = -2 / +2
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL R RSFLCPPRI EICRP L AWL SI VWNSDTNGN AR A+GV
Sbjct: 218 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 397
Query: 179 XXALIEPQSPVLWITGRIAWAISSKPHPVGMKARMQT 69
A I+P SP L I G A A S+PHPVGMKARMQT
Sbjct: 398 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQT 508
Score = 100 bits (214), Expect = 6e-021
Identities = 46/95 (48%), Positives = 58/95 (61%)
Frame = +3 / -1
Query: 72 LHPCFHAHWMGFAADCPSDPACDPQDWALGLDQGSCPGLRDPDGTSPVHAHRLPRLVPVR 251
LHPC HA+ MG A A D + A+G+D GS +RD G + +H R+P +VPVR
Sbjct: 505 LHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVVPVR 326
Query: 252 VGIPDQDAVQPGVQQRSADLPYPGRTQERPRDPEQ 356
V +PD DA+QPG+Q SADL PG QE P EQ
Sbjct: 325 V*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQ 221
>gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_O02 5', mRNA sequence
Length = 466
Score = 193 bits (415), Expect = 1e-048
Identities = 77/89 (86%), Positives = 84/89 (94%)
Frame = +1 / +1
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT+ DIFVCILAFMPTGWGLLL+AQA++P I K GLWGSI+ALARGY+I+MGLLLFTP
Sbjct: 199 PHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMKVGLWGSIRALARGYQIIMGLLLFTP 378
Query: 223 IAFLAWFPFVSEFQTRMLFNQAFSRGLQI 309
IAFLAWFPFVSEFQTRMLFNQAFSRGLQI
Sbjct: 379 IAFLAWFPFVSEFQTRMLFNQAFSRGLQI 465
Score = 112 bits (240), Expect = 2e-024
Identities = 52/89 (58%), Positives = 55/89 (61%)
Frame = -2 / -3
Query: 308 ICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXXXXALIEPQSPVLWITGR 129
ICRP L AWL SI VWNSDTNGN AR A+GV A I+P SP I G
Sbjct: 464 ICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMIWYPRARARIDPHSPTFMIAGF 285
Query: 128 IAWAISSKPHPVGMKARMQTNMSSTVMPG 42
A A S+PHPVGMKARMQTNMS VM G
Sbjct: 284 SA*ATRSRPHPVGMKARMQTNMSWIVMWG 198
Score = 104 bits (221), Expect = 7e-022
Identities = 46/97 (47%), Positives = 59/97 (60%)
Frame = +3 / +3
Query: 18 HRGNPNSDPWHDGAGHICLHPCFHAHWMGFAADCPSDPACDPQDWALGLDQGSCPGLRDP 197
H +P DP HD GHI LHPC HA+ MG A S A D + A+G+D GS + D
Sbjct: 174 HHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSSTEAGDHEGGAVGVDPGSSSWVPDH 353
Query: 198 DGTSPVHAHRLPRLVPVRVGIPDQDAVQPGVQQRSAD 308
G + +H R+P +VPVRV +PD DA+QP +Q SAD
Sbjct: 354 HGAAALHPDRVPGVVPVRV*VPDSDALQPSLQPWSAD 464
>gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20N14
5-PRIME, mRNA sequence
Length = 373
Score = 187 bits (403), Expect = 5e-047
Identities = 74/103 (71%), Positives = 87/103 (84%)
Frame = +1 / +3
Query: 55 VLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFL 234
+ DI VC LAF+PTGWG+LLIAQ P+ TGLWGS++ALAR YE++MG+LLFTPI L
Sbjct: 27 IKDILVCFLAFLPTGWGILLIAQPCIPLFRVTGLWGSVRALARAYEVIMGMLLFTPITVL 206
Query: 235 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE* 363
+WFPFVSEFQTRMLFNQAFSRGLQISRILGG KK+R + K+*
Sbjct: 207 SWFPFVSEFQTRMLFNQAFSRGLQISRILGGQKKERASSTKD* 335
Score = 112 bits (240), Expect = 2e-024
Identities = 53/100 (53%), Positives = 58/100 (58%)
Frame = -2 / -1
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL RSF PPRIR+IC PLLNAWLNSI VWNS+T GN R +GV
Sbjct: 331 SLVLEARSFF*PPRIRDICSPLLNAWLNSIRVWNSETKGNHDRTVIGVKRSIPMITSYAR 152
Query: 179 XXALIEPQSPVLWITGRIAWAISSKPHPVGMKARMQTNMS 60
A +P SPV G AISS PHPVG AR QT+MS
Sbjct: 151 ARARTDPHSPVTRKRGMQGCAISSIPHPVGKNARKQTSMS 32
>gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd04, mRNA sequence
Length = 550
Score = 174 bits (375), Expect = 4e-043
Identities = 70/83 (84%), Positives = 78/83 (93%)
Frame = +1 / -1
Query: 112 LIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAF 291
L+AQA++P I + GLWGSI+ALARGYEI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAF
Sbjct: 550 LVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAF 371
Query: 292 SRGLQISRILGGHKKDRGTRNKE 360
SRGLQISRILGGHKKDR R+K+
Sbjct: 370 SRGLQISRILGGHKKDRAARSKD 302
Score = 104 bits (221), Expect = 7e-022
Identities = 45/76 (59%), Positives = 47/76 (61%)
Frame = -2 / +3
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL R RSFLCPPRI EICRP L AWL SI VWNSDTNGN AR A+GV
Sbjct: 303 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 482
Query: 179 XXALIEPQSPVLWITG 132
A I+P SP L I G
Sbjct: 483 ARARIDPHSPTLMIAG 530
>gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012F07f, mRNA sequence
Length = 654
Score = 165 bits (355), Expect(2) = 2e-041
Identities = 65/81 (80%), Positives = 73/81 (90%)
Frame = +1 / +3
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT+ DIFVCILAFMPTGWGLLL+AQA++P I + GLWGSI+ALARGYEI+MGLLLFTP
Sbjct: 390 PHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTP 569
Query: 223 IAFLAWFPFVSEFQTRMLFNQ 285
IAFLAWFPFVSEFQT ML +
Sbjct: 570 IAFLAWFPFVSEFQTXMLLTR 632
Score = 23.5 bits (45), Expect(2) = 2e-041
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / +2
Query: 280 NQAFSRGLQ 306
NQAFSRGLQ
Sbjct: 626 NQAFSRGLQ 652
>gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h14 3', mRNA sequence
Length = 358
Score = 167 bits (359), Expect = 6e-041
Identities = 67/80 (83%), Positives = 74/80 (92%)
Frame = +1 / -3
Query: 121 QAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRG 300
QA++P I + GLWGSI+ALARGYEI+MG LLFTPIAFLAWFPFVSEFQTRMLFNQAFSRG
Sbjct: 356 QALKPAIMRVGLWGSIRALARGYEIIMGXLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRG 177
Query: 301 LQISRILGGHKKDRGTRNKE 360
LQISRILGGHKKDR R+K+
Sbjct: 176 LQISRILGGHKKDRAARSKD 117
Score = 101 bits (216), Expect = 3e-021
Identities = 45/76 (59%), Positives = 47/76 (61%)
Frame = -2 / +1
Query: 359 SLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 180
SL R RSFLCPPRI EICRP L AWL SI VWNSDTNGN AR A+GV
Sbjct: 118 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSXPMMISYPR 297
Query: 179 XXALIEPQSPVLWITG 132
A I+P P L I G
Sbjct: 298 ARARIDPHXPTLMIAG 345
>gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 3', mRNA sequence
Length = 413
Score = 160 bits (344), Expect = 7e-039
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = +1 / -1
Query: 139 IHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRI 318
I + GLWGSI+ALARGYEI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRI
Sbjct: 413 IMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRI 234
Query: 319 LGGHKKDRGTRNKE 360
LGGHKKDR R+K+
Sbjct: 233 LGGHKKDRAARSKD 192
>gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 618
Score = 144 bits (308), Expect = 7e-034
Identities = 53/99 (53%), Positives = 78/99 (78%)
Frame = +1 / -3
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
+ V+D+ ILA++PTGWG+L IA A +P++ + GLW ++++LAR Y+ MG+++F PIA
Sbjct: 601 LAVVDVLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIA 422
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 345
+WFPF+S FQTR+LFNQAFSRGL+IS IL G+ ++ G
Sbjct: 421 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNQNAG 305
>gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007G03f, mRNA sequence
Length = 641
Score = 144 bits (308), Expect = 7e-034
Identities = 53/99 (53%), Positives = 78/99 (78%)
Frame = +1 / -2
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
+ V+D+ ILA++PTGWG+L IA A +P++ + GLW ++++LAR Y+ MG+++F PIA
Sbjct: 514 LAVVDVLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIA 335
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 345
+WFPF+S FQTR+LFNQAFSRGL+IS IL G+ ++ G
Sbjct: 334 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNQNAG 218
>gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017J08f, mRNA sequence
Length = 839
Score = 144 bits (308), Expect = 7e-034
Identities = 53/99 (53%), Positives = 78/99 (78%)
Frame = +1 / +2
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
+ V+D+ ILA++PTGWG+L IA A +P++ + GLW ++++LAR Y+ MG+++F PIA
Sbjct: 146 LAVVDVLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIA 325
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 345
+WFPF+S FQTR+LFNQAFSRGL+IS IL G+ ++ G
Sbjct: 326 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNQNAG 442
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 144 bits (308), Expect = 7e-034
Identities = 53/99 (53%), Positives = 78/99 (78%)
Frame = +1 / +3
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
+ V+D+ ILA++PTGWG+L IA A +P++ + GLW ++++LAR Y+ MG+++F PIA
Sbjct: 5538 LAVVDVLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIA 5717
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 345
+WFPF+S FQTR+LFNQAFSRGL+IS IL G+ ++ G
Sbjct: 5718 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNQNAG 5834
>gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd07, mRNA sequence
Length = 506
Score = 142 bits (305), Expect = 2e-033
Identities = 58/64 (90%), Positives = 62/64 (96%)
Frame = +1 / -3
Query: 169 KALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 348
+ALARGYEI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR
Sbjct: 498 RALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAA 319
Query: 349 RNKE 360
R+K+
Sbjct: 318 RSKD 307
>gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_P19 5', mRNA sequence
Length = 425
Score = 142 bits (304), Expect = 2e-033
Identities = 56/72 (77%), Positives = 65/72 (90%)
Frame = +1 / +1
Query: 148 TGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 327
TGLWGS++ALAR YE++MG+LLFTPI L+WFPFVSEFQTRMLFNQAFSRGLQISRILGG
Sbjct: 13 TGLWGSVRALARAYEVIMGMLLFTPITVLSWFPFVSEFQTRMLFNQAFSRGLQISRILGG 192
Query: 328 HKKDRGTRNKE* 363
KK+R + K+*
Sbjct: 193 QKKERASSTKD* 228
>gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024G07f, mRNA sequence
Length = 834
Score = 140 bits (300), Expect = 8e-033
Identities = 52/93 (55%), Positives = 74/93 (79%)
Frame = +1 / +2
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
+ V+D+ ILA++PTGWG+L IA A +P++ + GLW ++++LAR Y+ MG+++F PIA
Sbjct: 368 LAVVDVLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIA 547
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 327
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 548 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 646
>gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06cd06, mRNA sequence
Length = 639
Score = 133 bits (284), Expect = 1e-030
Identities = 49/96 (51%), Positives = 73/96 (76%)
Frame = +1 / -1
Query: 58 LDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLA 237
+D+ ILA++PTGWG+ IA A +P++ + GLW ++++LA Y+ MG+++F PIA +
Sbjct: 630 VDVLASILAYVPTGWGIFSIAVAWKPIVKRLGLWKTVRSLAPLYDAGMGMIIFVPIAICS 451
Query: 238 WFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 345
WFPF+S FQTR+LFNQAFSRGL+I IL G+ ++ G
Sbjct: 450 WFPFISPFQTRLLFNQAFSRGLEIFFILAGNNQNAG 343
>gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 3', mRNA sequence
Length = 393
Score = 127 bits (273), Expect = 4e-029
Identities = 52/57 (91%), Positives = 55/57 (96%)
Frame = +1 / -2
Query: 190 EILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
EI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 392 EIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 222
>gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 3', mRNA sequence
Length = 415
Score = 127 bits (273), Expect = 4e-029
Identities = 52/57 (91%), Positives = 55/57 (96%)
Frame = +1 / -2
Query: 190 EILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
EI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 414 EIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 244
>gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 3', mRNA sequence
Length = 414
Score = 127 bits (273), Expect = 4e-029
Identities = 52/57 (91%), Positives = 55/57 (96%)
Frame = +1 / -2
Query: 190 EILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
EI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 413 EIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 243
>gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
5-PRIME, mRNA sequence
Length = 641
Score = 127 bits (272), Expect = 6e-029
Identities = 49/98 (50%), Positives = 71/98 (72%)
Frame = +1 / +3
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
+T+ D+F LAF+ TGW +L +A + V+ GLW S++ ++R Y+ MG ++F PI
Sbjct: 66 LTIADLFASALAFLATGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIV 245
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 342
F +WFPFVS FQ+R+LFNQAFSRGL+IS IL G+K ++
Sbjct: 246 FFSWFPFVSTFQSRILFNQAFSRGLEISLILAGNKANQ 359
>gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
3-PRIME, mRNA sequence
Length = 585
Score = 126 bits (270), Expect = 1e-028
Identities = 49/97 (50%), Positives = 70/97 (72%)
Frame = +1 / -1
Query: 52 TVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAF 231
T+ D+F LAF+ TGW +L +A + V+ GLW S++ ++R Y+ MG ++F PI F
Sbjct: 576 TIADLFASALAFLATGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIVF 397
Query: 232 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 342
+WFPFVS FQ+R+LFNQAFSRGL+IS IL G+K ++
Sbjct: 396 FSWFPFVSTFQSRILFNQAFSRGLEISLILAGNKANQ 286
>gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. vulgare cDNA clone HX10M03
3-PRIME, mRNA sequence
Length = 559
Score = 124 bits (265), Expect = 6e-028
Identities = 46/83 (55%), Positives = 66/83 (79%)
Frame = +1 / -3
Query: 97 GWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRML 276
GWG+L IA A +P++ + GLW ++++LAR Y+ MG+++F PIA +WFPF+S FQTR+L
Sbjct: 557 GWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRLL 378
Query: 277 FNQAFSRGLQISRILGGHKKDRG 345
FNQAFSRGL+IS IL G+ ++ G
Sbjct: 377 FNQAFSRGLEISLILAGNNQNAG 309
>gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02df07, mRNA sequence
Length = 676
Score = 124 bits (265), Expect = 6e-028
Identities = 48/96 (50%), Positives = 69/96 (71%)
Frame = +1 / -2
Query: 55 VLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFL 234
+ D+F LAF+ TGW +L +A + V+ GLW S++ ++R Y+ MG ++F PI F
Sbjct: 666 IADLFASALAFLATGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIVFF 487
Query: 235 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 342
+WFPFVS FQ+R+LFNQAFSRGL+IS IL G+K ++
Sbjct: 486 SWFPFVSTFQSRILFNQAFSRGLEISLILAGNKANQ 379
>gb|BJ469981.1|BJ469981 BJ469981 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 5', mRNA sequence
Length = 483
Score = 122 bits (262), Expect = 1e-027
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +1 / +1
Query: 199 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 22 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 183
>gb|BJ472233.1|BJ472233 BJ472233 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 5', mRNA sequence
Length = 471
Score = 122 bits (262), Expect = 1e-027
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +1 / +1
Query: 199 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 10 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 171
>gb|BJ473277.1|BJ473277 BJ473277 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41i04 5', mRNA sequence
Length = 474
Score = 122 bits (262), Expect = 1e-027
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +1 / +1
Query: 199 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 13 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 174
>gb|BJ471422.1|BJ471422 BJ471422 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 5', mRNA sequence
Length = 447
Score = 114 bits (243), Expect = 6e-025
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = +1 / +1
Query: 205 LLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE 360
LLLFTPI FLAWFPFV EFQTRMLFNQAFSRGLQISRILGGHKKDR R+K+
Sbjct: 1 LLLFTPIXFLAWFPFVXEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 156
>gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G08F1, mRNA sequence
Length = 300
Score = 108 bits (231), Expect = 3e-023
Identities = 39/72 (54%), Positives = 58/72 (80%)
Frame = +1 / +3
Query: 130 RPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQI 309
+P++ + GLW ++++LAR Y+ MG+++F PIA +WFPF+S FQTR+LFNQAFSRGL+I
Sbjct: 3 KPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRLLFNQAFSRGLEI 182
Query: 310 SRILGGHKKDRG 345
S IL G+ ++ G
Sbjct: 183 SLILAGNNQNAG 218
>gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 5', mRNA sequence
Length = 495
Score = 105 bits (224), Expect = 3e-022
Identities = 40/52 (76%), Positives = 47/52 (90%)
Frame = +1 / +2
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEIL 198
P MT+ DIFVCILAFMPTGWGLLL+AQA++P I + GLWGSI+ALARGYEI+
Sbjct: 338 PHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEII 493
>gb|BQ754043.1|BQ754043 EBca01_SQ002_K10_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_K10 5', mRNA sequence
Length = 440
Score = 104 bits (221), Expect = 7e-022
Identities = 43/44 (97%), Positives = 43/44 (97%)
Frame = +1 / +3
Query: 232 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE* 363
LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR TRNKE*
Sbjct: 24 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRATRNKE* 155
>gb|CB883678.1|CB883678 HQ02P09w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02P09
3-PRIME, mRNA sequence
Length = 541
Score = 104 bits (221), Expect = 7e-022
Identities = 43/44 (97%), Positives = 43/44 (97%)
Frame = +1 / +1
Query: 232 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE* 363
LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR TRNKE*
Sbjct: 31 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRATRNKE* 162
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 322,263,966
Number of Sequences: 312970
Number of extensions: 5235997
Number of successful extensions: 53536
Number of sequences better than 1.0e-020: 53
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7550174202
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)