TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405117.2.2
(800 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. v... 143 1e-062
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 140 2e-062
gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedl... 143 4e-062
gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedl... 143 1e-059
gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. v... 143 2e-052
gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. v... 116 1e-051
gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. v... 141 2e-051
gb|BG300595.1|BG300595 HVSMEb0017J24f Hordeum vulgare seedl... 114 4e-050
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 124 4e-047
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 124 4e-047
gb|BQ665345.1|BQ665345 HX03B16u HX Hordeum vulgare subsp. v... 116 1e-045
gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. v... 114 3e-044
gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. v... 113 6e-044
gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedl... 105 1e-041
gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-a... 143 2e-041
gb|AL500168.1|AL500168 AL500168 Hordeum vulgare Barke etiol... 119 9e-038
gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedl... 143 8e-037
gb|BU971930.1|BU971930 HB20B14r BC Hordeum vulgare subsp. v... 139 1e-036
gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedl... 143 2e-035
gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiol... 143 1e-034
gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. v... 83 1e-030
gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. v... 83 1e-030
gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedl... 132 2e-030
emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan tr... 104 5e-030
gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA li... 104 5e-030
gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA li... 104 5e-030
gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. v... 104 5e-030
gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA li... 104 5e-030
gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedl... 131 6e-030
gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedl... 126 1e-028
gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA li... 99 2e-028
gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, red... 124 7e-028
gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare su... 97 1e-027
gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. v... 104 1e-027
gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. v... 95 4e-027
gb|AL500467.1|AL500467 AL500467 Hordeum vulgare Barke etiol... 70 6e-027
gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA li... 94 7e-027
gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA li... 90 1e-025
gb|CB858845.1|CB858845 HI08H24w HI Hordeum vulgare subsp. v... 102 3e-024
gb|BQ663388.1|BQ663388 HU02G22u HU Hordeum vulgare subsp. v... 92 7e-024
gb|CA001491.1|CA001491 HS17J24u HS Hordeum vulgare subsp. v... 84 3e-023
gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiol... 81 6e-023
gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. v... 68 6e-022
gb|AV915915.1|AV915915 AV915915 K. Sato unpublished cDNA li... 104 6e-022
gb|BQ471752.1|BQ471752 HV03F21r HV Hordeum vulgare subsp. v... 104 6e-022
gb|BM100605.2|BM100605 EBma01_SQ005_L10_R maternal, 4 DPA, ... 104 6e-022
gb|BE422297.1|BE422297 HWM022cF.08r ITEC HWM Barley Leaf Li... 101 4e-021
>gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
5-PRIME, mRNA sequence
Length = 604
Score = 143 bits (307), Expect(2) = 1e-062
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDFRN+E KG+AFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 58 IRDFRNMEGKGIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 237
Score = 116 bits (249), Expect(2) = 1e-062
Identities = 44/69 (63%), Positives = 48/69 (69%)
Frame = +1 / +1
Query: 193 GGRTRCGATVXXXXXXXXXXXXXXXDWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQ 372
GGR RCGA++ DWYNQELDLT QQRMRWVQ YMIYNYCTDPKR
Sbjct: 250 GGRPRCGASIGTDAAPGTGGAAAVGDWYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRVA 429
Query: 373 QGLPAECSM 399
+G+PAECSM
Sbjct: 430 KGVPAECSM 456
Score = 106 bits (226), Expect(2) = 4e-042
Identities = 47/59 (79%), Positives = 47/59 (79%)
Frame = -3 / -3
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASAL PR*EAE GAWDQSVLTRPPCVAQSSAF RLE SRIGW LG A P S KSLI
Sbjct: 233 ASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLEYSRIGWFLGKAIPFPSMFLKSLI 57
Score = 85.4 bits (180), Expect(2) = 4e-042
Identities = 41/65 (63%), Positives = 43/65 (66%)
Frame = -1 / -3
Query: 398 MEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQXXXXXXXXXXXXXXXPT 219
MEHSAG P RLGSVQ*L*IM L CTQR+RCCRVRSSSWLYQ P
Sbjct: 455 MEHSAGTPLATRLGSVQ*L*IM*LLCTQRMRCCRVRSSSWLYQSPTAAAPPVPGAASVPM 276
Query: 218 VAPQR 204
+APQR
Sbjct: 275 LAPQR 261
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEA)
Length = 1174
Score = 140 bits (300), Expect(2) = 2e-062
Identities = 54/60 (90%), Positives = 57/60 (95%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+NLE KG+AFPK+QPMRLYSSL NADDWATQG RVKTDWSHAPFSASYRGFKADAC
Sbjct: 526 IRDFKNLEGKGIAFPKNQPMRLYSSLWNADDWATQGARVKTDWSHAPFSASYRGFKADAC 705
Score = 119 bits (254), Expect(2) = 2e-062
Identities = 45/70 (64%), Positives = 50/70 (71%)
Frame = +1 / +1
Query: 190 AGGRTRCGATVXXXXXXXXXXXXXXXDWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
AGGR RCGA++ +WYNQELDLTLQQRMRWVQ YMIYNYCTDPKR
Sbjct: 715 AGGRPRCGASMGTEAAPGTGASGAAGEWYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRV 894
Query: 370 QQGLPAECSM 399
+G+PAECSM
Sbjct: 895 AKGVPAECSM 924
Score = 109 bits (232), Expect(2) = 5e-041
Identities = 48/59 (81%), Positives = 49/59 (83%)
Frame = -3 / -3
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASAL PR*EAE GAWDQSVLTR PCVAQSSAF RLE*SR+GW LGNA P SR KSLI
Sbjct: 701 ASALKPR*EAENGAWDQSVLTRAPCVAQSSAFQRLE*SRMGWFLGNAIPFPSRFLKSLI 525
Score = 79.0 bits (166), Expect(2) = 5e-041
Identities = 39/65 (60%), Positives = 40/65 (61%)
Frame = -1 / -3
Query: 398 MEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQXXXXXXXXXXXXXXXPT 219
MEHSAG P RLGSVQ*L*IM L CT RIRCC VRSSSWLY P
Sbjct: 923 MEHSAGTPLATRLGSVQ*L*IM*LLCTHRIRCCSVRSSSWLYHSPAAPEAPVPGAASVPM 744
Query: 218 VAPQR 204
+APQR
Sbjct: 743 LAPQR 729
>gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013D21f, mRNA sequence
Length = 830
Score = 143 bits (306), Expect(2) = 4e-062
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+NLE KG+AFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 185 IRDFKNLEGKGIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 364
Score = 115 bits (246), Expect(2) = 4e-062
Identities = 43/70 (61%), Positives = 49/70 (70%)
Frame = +1 / +2
Query: 190 AGGRTRCGATVXXXXXXXXXXXXXXXDWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
AGGR RCGA++ +WYNQELDLTLQQRMRWVQ YMIYNYCTDPKR
Sbjct: 374 AGGRPRCGASMGTEAAPGTGASGAAGEWYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRV 553
Query: 370 QQGLPAECSM 399
+G+P +CSM
Sbjct: 554 TKGVPGKCSM 583
Score = 112 bits (240), Expect(2) = 1e-040
Identities = 49/59 (83%), Positives = 50/59 (84%)
Frame = -3 / -3
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASAL PR*EAE GAWDQSVLTRPPCVAQSSAF RLE*SR+GW LGNA P SR KSLI
Sbjct: 360 ASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLE*SRMGWFLGNAIPFPSRFLKSLI 184
Score = 73.9 bits (155), Expect(2) = 1e-040
Identities = 37/65 (56%), Positives = 38/65 (58%)
Frame = -1 / -3
Query: 398 MEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQXXXXXXXXXXXXXXXPT 219
MEH G P RLGSVQ*L*IM L CT RIRCC VRSSSWLY P
Sbjct: 582 MEHLPGTPLVTRLGSVQ*L*IM*LLCTHRIRCCSVRSSSWLYHSPAAPEAPVPGAASVPM 403
Query: 218 VAPQR 204
+APQR
Sbjct: 402 LAPQR 388
>gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001G10f, mRNA sequence
Length = 841
Score = 143 bits (306), Expect(3) = 1e-059
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+NLE KG+AFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 26 IRDFKNLEGKGIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 205
Score = 110 bits (234), Expect(2) = 9e-041
Identities = 48/59 (81%), Positives = 49/59 (83%)
Frame = -3 / -2
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASAL PR*EAE GAWDQSVLTRPPCVAQSSAF RLE*SR+GW LG A P SR KSLI
Sbjct: 201 ASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLE*SRMGWFLGKAIPFPSRFLKSLI 25
Score = 102 bits (218), Expect(3) = 1e-059
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +1 / +2
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSM 399
+WYNQELDLT QQRMRWVQ YMIYNYCTDPKR+ QG+PAECSM
Sbjct: 284 EWYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRFAQGVPAECSM 415
Score = 77.1 bits (162), Expect(2) = 9e-041
Identities = 40/61 (65%), Positives = 42/61 (68%)
Frame = -1 / -2
Query: 455 HTRARAPLLDGRGITGRYCMEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWL 276
+TRA L GR + MEHSAG P LGSVQ*L*IM L CT RIRCCRVRSSSWL
Sbjct: 471 YTRAVQC*LAGRTDGQGHYMEHSAGTP*ANLLGSVQ*L*IM*LLCTHRIRCCRVRSSSWL 292
Query: 275 Y 273
Y
Sbjct: 291 Y 289
Score = 23.1 bits (44), Expect(3) = 1e-059
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / +2
Query: 190 AGGRTRCGATV 222
AGGR CGA+V
Sbjct: 215 AGGRPHCGASV 247
>gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. vulgare cDNA clone HM01J07
5-PRIME, mRNA sequence
Length = 491
Score = 143 bits (306), Expect(3) = 2e-052
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+NLE KG+AFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 138 IRDFKNLEGKGIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 317
Score = 110 bits (234), Expect(2) = 2e-036
Identities = 48/59 (81%), Positives = 49/59 (83%)
Frame = -3 / -2
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASAL PR*EAE GAWDQSVLTRPPCVAQSSAF RLE*SR+GW LG A P SR KSLI
Sbjct: 313 ASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLE*SRMGWFLGKAIPFPSRFLKSLI 137
Score = 78.5 bits (165), Expect(3) = 2e-052
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = +1 / +3
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPK 363
+WYNQELDLT QQRMRWVQ YMIYNYCTDPK
Sbjct: 396 EWYNQELDLTRQQRMRWVQSNYMIYNYCTDPK 491
Score = 62.5 bits (130), Expect(2) = 2e-036
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = -1 / -2
Query: 362 LGSVQ*L*IMYLRCTQRIRCCRVRSSSWLY 273
LGSVQ*L*IM L CT RIRCCRVRSSSWLY
Sbjct: 490 LGSVQ*L*IM*LLCTHRIRCCRVRSSSWLY 401
Score = 23.1 bits (44), Expect(3) = 2e-052
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 190 AGGRTRCGATV 222
AGGR CGA+V
Sbjct: 327 AGGRPHCGASV 359
>gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
3-PRIME, mRNA sequence
Length = 579
Score = 116 bits (249), Expect(2) = 1e-051
Identities = 44/69 (63%), Positives = 48/69 (69%)
Frame = +1 / -2
Query: 193 GGRTRCGATVXXXXXXXXXXXXXXXDWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQ 372
GGR RCGA++ DWYNQELDLT QQRMRWVQ YMIYNYCTDPKR
Sbjct: 440 GGRPRCGASIGTDAAPGTGGAAAVGDWYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRVA 261
Query: 373 QGLPAECSM 399
+G+PAECSM
Sbjct: 260 KGVPAECSM 234
Score = 106 bits (226), Expect(2) = 1e-051
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +2 / -2
Query: 56 PMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
PMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 578 PMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 453
Score = 85.4 bits (180), Expect(2) = 7e-036
Identities = 37/41 (90%), Positives = 37/41 (90%)
Frame = -3 / +1
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIG 55
ASAL PR*EAE GAWDQSVLTRPPCVAQSSAF RLE SRIG
Sbjct: 457 ASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLEYSRIG 579
Score = 85.4 bits (180), Expect(2) = 7e-036
Identities = 41/65 (63%), Positives = 43/65 (66%)
Frame = -1 / +1
Query: 398 MEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQXXXXXXXXXXXXXXXPT 219
MEHSAG P RLGSVQ*L*IM L CTQR+RCCRVRSSSWLYQ P
Sbjct: 235 MEHSAGTPLATRLGSVQ*L*IM*LLCTQRMRCCRVRSSSWLYQSPTAAAPPVPGAASVPM 414
Query: 218 VAPQR 204
+APQR
Sbjct: 415 LAPQR 429
>gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. vulgare cDNA clone HP05D02
5-PRIME, mRNA sequence
Length = 632
Score = 141 bits (302), Expect(3) = 2e-051
Identities = 54/60 (90%), Positives = 57/60 (95%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+NLE KG+AFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFS SYRGFKADAC
Sbjct: 276 IRDFKNLEGKGIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSXSYRGFKADAC 455
Score = 108 bits (230), Expect(2) = 7e-036
Identities = 47/59 (79%), Positives = 48/59 (81%)
Frame = -3 / -2
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASAL PR*E E GAWDQSVLTRPPCVAQSSAF RLE*SR+GW LG A P SR KSLI
Sbjct: 451 ASALKPR*EXENGAWDQSVLTRPPCVAQSSAFQRLE*SRMGWFLGKAIPFPSRFLKSLI 275
Score = 77.1 bits (162), Expect(3) = 2e-051
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +1 / +3
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPK 363
+WYNQELDLT QQRMRWVQ YMIYNYCTDP+
Sbjct: 534 EWYNQELDLTRQQRMRWVQSNYMIYNYCTDPR 629
Score = 62.5 bits (130), Expect(2) = 7e-036
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = -1 / -2
Query: 362 LGSVQ*L*IMYLRCTQRIRCCRVRSSSWLY 273
LGSVQ*L*IM L CT RIRCCRVRSSSWLY
Sbjct: 628 LGSVQ*L*IM*LLCTHRIRCCRVRSSSWLY 539
Score = 23.1 bits (44), Expect(3) = 2e-051
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 190 AGGRTRCGATV 222
AGGR CGA+V
Sbjct: 465 AGGRPHCGASV 497
>gb|BG300595.1|BG300595 HVSMEb0017J24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017J24f, mRNA sequence
Length = 872
Score = 114 bits (243), Expect(2) = 4e-050
Identities = 44/70 (62%), Positives = 49/70 (70%)
Frame = +1 / -2
Query: 190 AGGRTRCGATVXXXXXXXXXXXXXXXDWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
AGGR R GA++ +WYNQELDLTLQQRMRWVQ YMIYNYCTDPKR
Sbjct: 457 AGGRPRFGASMGTEAAPGTGASGAAGEWYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRV 278
Query: 370 QQGLPAECSM 399
+G+PAECSM
Sbjct: 277 AKGVPAECSM 248
Score = 104 bits (221), Expect(2) = 4e-050
Identities = 41/56 (73%), Positives = 45/56 (80%)
Frame = +2 / -2
Query: 14 RNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
R +G PK+QP+R+ SSL N DDWATQG RVKTDWSHAPFSASYRGFKADAC
Sbjct: 634 RTWRGRGSRSPKNQPIRV*SSLWNPDDWATQGARVKTDWSHAPFSASYRGFKADAC 467
Score = 92.3 bits (195), Expect(3) = 1e-037
Identities = 38/50 (76%), Positives = 42/50 (84%)
Frame = -3 / +3
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPL 28
ASAL PR*EAE GAWDQSVLTR PCVAQSS F+RL+*+R+GW LG PL
Sbjct: 471 ASALKPR*EAENGAWDQSVLTRAPCVAQSSGFHRLD*TRMGWFLGERDPL 620
Score = 77.1 bits (162), Expect(3) = 1e-037
Identities = 38/65 (58%), Positives = 40/65 (61%)
Frame = -1 / +3
Query: 398 MEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQXXXXXXXXXXXXXXXPT 219
MEHSAG P RLGSVQ*L*IM L CT RIRCC VRSSSWLY P
Sbjct: 249 MEHSAGTPLATRLGSVQ*L*IM*LLCTHRIRCCSVRSSSWLYHSPAAPEAPVPGAASVPM 428
Query: 218 VAPQR 204
+AP+R
Sbjct: 429 LAPKR 443
Score = 25.4 bits (49), Expect(3) = 1e-037
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2 / +3
Query: 49 LGERHPLALQVAEV 8
LGER PL LQV E+
Sbjct: 600 LGERDPLPLQVLEI 641
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEB)
Length = 1226
Score = 124 bits (265), Expect(2) = 4e-047
Identities = 48/60 (80%), Positives = 54/60 (90%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV+FPKSQPMRLY+SL NADDWATQGGRVKTDWS APF AS+R F ADAC
Sbjct: 587 IRDFKNHEARGVSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADAC 766
Score = 91.3 bits (193), Expect(2) = 4e-028
Identities = 45/63 (71%), Positives = 46/63 (73%)
Frame = -3 / -3
Query: 189 DGXQASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRK 10
D QASAL R EA GA QSVLTRPPCVAQSSAF+RL SRIGWLLGN TP S K
Sbjct: 774 DMTQASALKLRKEATNGALLQSVLTRPPCVAQSSAFHRLAYSRIGWLLGNDTPRASWFLK 595
Query: 9 SLI 1
SLI
Sbjct: 594 SLI 586
Score = 84.0 bits (177), Expect(2) = 4e-047
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQEL +RMRWVQRK+MIYNYCTDPKR QG+PAEC ++*
Sbjct: 836 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 970
Score = 53.3 bits (110), Expect(2) = 4e-028
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = -1 / -3
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RLGSVQ*L*IM CT R+R + SSW +Q
Sbjct: 957 HSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 835
>gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D09
5-PRIME, mRNA sequence
Length = 619
Score = 124 bits (265), Expect(2) = 4e-047
Identities = 48/60 (80%), Positives = 54/60 (90%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV+FPKSQPMRLY+SL NADDWATQGGRVKTDWS APF AS+R F ADAC
Sbjct: 61 IRDFKNHEARGVSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADAC 240
Score = 91.3 bits (193), Expect(2) = 4e-028
Identities = 45/63 (71%), Positives = 46/63 (73%)
Frame = -3 / -3
Query: 189 DGXQASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRK 10
D QASAL R EA GA QSVLTRPPCVAQSSAF+RL SRIGWLLGN TP S K
Sbjct: 248 DMTQASALKLRKEATNGALLQSVLTRPPCVAQSSAFHRLAYSRIGWLLGNDTPRASWFLK 69
Query: 9 SLI 1
SLI
Sbjct: 68 SLI 60
Score = 84.0 bits (177), Expect(2) = 4e-047
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQEL +RMRWVQRK+MIYNYCTDPKR QG+PAEC ++*
Sbjct: 310 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 444
Score = 53.3 bits (110), Expect(2) = 4e-028
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = -1 / -3
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RLGSVQ*L*IM CT R+R + SSW +Q
Sbjct: 431 HSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 309
>gb|BQ665345.1|BQ665345 HX03B16u HX Hordeum vulgare subsp. vulgare cDNA clone HX03B16
3-PRIME, mRNA sequence
Length = 469
Score = 116 bits (249), Expect(2) = 1e-045
Identities = 44/69 (63%), Positives = 48/69 (69%)
Frame = +1 / -3
Query: 193 GGRTRCGATVXXXXXXXXXXXXXXXDWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQ 372
GGR RCGA++ DWYNQELDLT QQRMRWVQ YMIYNYCTDPKR
Sbjct: 359 GGRPRCGASIGTDAAPGTGGAAAVGDWYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRVA 180
Query: 373 QGLPAECSM 399
+G+PAECSM
Sbjct: 179 KGVPAECSM 153
Score = 86.3 bits (182), Expect(2) = 1e-045
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +2 / -3
Query: 86 ADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
ADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 467 ADDWATQGGRVKTDWSHAPFSASYRGFKADAC 372
Score = 85.4 bits (180), Expect(2) = 4e-031
Identities = 41/65 (63%), Positives = 43/65 (66%)
Frame = -1 / +1
Query: 398 MEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQXXXXXXXXXXXXXXXPT 219
MEHSAG P RLGSVQ*L*IM L CTQR+RCCRVRSSSWLYQ P
Sbjct: 154 MEHSAGTPLATRLGSVQ*L*IM*LLCTQRMRCCRVRSSSWLYQSPTAAAPPVPGAASVPM 333
Query: 218 VAPQR 204
+APQR
Sbjct: 334 LAPQR 348
Score = 69.3 bits (145), Expect(2) = 4e-031
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = -3 / +1
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSA 85
ASAL PR*EAE GAWDQSVLTRPPCVAQSSA
Sbjct: 376 ASALKPR*EAENGAWDQSVLTRPPCVAQSSA 468
>gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. vulgare cDNA clone HF19F01
5-PRIME, mRNA sequence
Length = 444
Score = 114 bits (244), Expect(2) = 3e-044
Identities = 44/56 (78%), Positives = 50/56 (89%)
Frame = +2 / +2
Query: 14 RNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
+N E++GV+FPKSQPMRLY+SL NADDWATQGGRVKTDWS APF AS+R F ADAC
Sbjct: 2 KNHEARGVSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADAC 169
Score = 85.8 bits (181), Expect(2) = 2e-026
Identities = 41/56 (73%), Positives = 42/56 (75%)
Frame = -3 / -1
Query: 189 DGXQASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLS 22
D QASAL R EA GA QSVLTRPPCVAQSSAF+RL SRIGWLLGN TP S
Sbjct: 177 DMTQASALKLRKEATNGALLQSVLTRPPCVAQSSAFHRLAYSRIGWLLGNDTPRAS 10
Score = 84.0 bits (177), Expect(2) = 3e-044
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQEL +RMRWVQRK+MIYNYCTDPKR QG+PAEC ++*
Sbjct: 239 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 373
Score = 53.3 bits (110), Expect(2) = 2e-026
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = -1 / -1
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RLGSVQ*L*IM CT R+R + SSW +Q
Sbjct: 360 HSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 238
>gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. vulgare cDNA clone HI01A16
3-PRIME, mRNA sequence
Length = 545
Score = 113 bits (242), Expect(2) = 6e-044
Identities = 44/55 (80%), Positives = 49/55 (89%)
Frame = +2 / -2
Query: 17 NLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
N E++GV+FPKSQPMRLY+SL NADDWATQGGRVKTDWS APF AS+R F ADAC
Sbjct: 544 NHEARGVSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADAC 380
Score = 85.8 bits (181), Expect(2) = 2e-026
Identities = 41/56 (73%), Positives = 42/56 (75%)
Frame = -3 / +3
Query: 189 DGXQASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLS 22
D QASAL R EA GA QSVLTRPPCVAQSSAF+RL SRIGWLLGN TP S
Sbjct: 372 DMTQASALKLRKEATNGALLQSVLTRPPCVAQSSAFHRLAYSRIGWLLGNDTPRAS 539
Score = 84.0 bits (177), Expect(2) = 6e-044
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1 / -2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQEL +RMRWVQRK+MIYNYCTDPKR QG+PAEC ++*
Sbjct: 310 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 176
Score = 53.3 bits (110), Expect(2) = 2e-026
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = -1 / +3
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RLGSVQ*L*IM CT R+R + SSW +Q
Sbjct: 189 HSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 311
>gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013D01f, mRNA sequence
Length = 542
Score = 105 bits (225), Expect(2) = 1e-041
Identities = 41/49 (83%), Positives = 44/49 (89%)
Frame = +2 / +1
Query: 35 VAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
V+FPKSQPMRLY+SL NADDWATQGGRVKTDWS APF AS+R F ADAC
Sbjct: 1 VSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADAC 147
Score = 84.0 bits (177), Expect(2) = 1e-041
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQEL +RMRWVQRK+MIYNYCTDPKR QG+PAEC ++*
Sbjct: 217 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 351
Score = 80.8 bits (170), Expect(2) = 6e-025
Identities = 38/50 (76%), Positives = 39/50 (78%)
Frame = -3 / -1
Query: 189 DGXQASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGN 40
D QASAL R EA GA QSVLTRPPCVAQSSAF+RL SRIGWLLGN
Sbjct: 155 DMTQASALKLRKEATNGALLQSVLTRPPCVAQSSAFHRLAYSRIGWLLGN 6
Score = 53.3 bits (110), Expect(2) = 6e-025
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = -1 / -1
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RLGSVQ*L*IM CT R+R + SSW +Q
Sbjct: 338 HSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 216
>gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004C03f, mRNA sequence
Length = 556
Score = 143 bits (307), Expect(2) = 2e-041
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDFRN+E KG+AFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 247 IRDFRNMEGKGIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 426
Score = 106 bits (226), Expect(2) = 1e-027
Identities = 47/59 (79%), Positives = 47/59 (79%)
Frame = -3 / -3
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASAL PR*EAE GAWDQSVLTRPPCVAQSSAF RLE SRIGW LG A P S KSLI
Sbjct: 422 ASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLEYSRIGWFLGKAIPFPSMFLKSLI 246
Score = 46.0 bits (94), Expect(2) = 2e-041
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +1 / +1
Query: 196 GRTRCGATVXXXXXXXXXXXXXXXDWYNQELDLTLQQR 309
GR RCGA++ DWY+QELDLT QQR
Sbjct: 442 GRPRCGASIGTDAGPRTGCAAAVCDWYHQELDLTXQQR 555
Score = 36.3 bits (73), Expect(2) = 1e-027
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -1 / -3
Query: 308 RCCRVRSSSWLYQXXXXXXXXXXXXXXXPTVAPQR 204
RCC VRSSSW YQ P +APQR
Sbjct: 554 RCCXVRSSSWWYQSQTAAAQPVLGPASVPMLAPQR 450
>gb|AL500168.1|AL500168 AL500168 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05D18r 3', mRNA sequence
Length = 521
Score = 119 bits (254), Expect(2) = 9e-038
Identities = 45/70 (64%), Positives = 50/70 (71%)
Frame = +1 / +2
Query: 190 AGGRTRCGATVXXXXXXXXXXXXXXXDWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
AGGR RCGA++ +WYNQELDLTLQQRMRWVQ YMIYNYCTDPKR
Sbjct: 74 AGGRPRCGASMGTEAAPGTGASGAAGEWYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRV 253
Query: 370 QQGLPAECSM 399
+G+PAECSM
Sbjct: 254 AKGVPAECSM 283
Score = 79.0 bits (166), Expect(2) = 3e-021
Identities = 39/65 (60%), Positives = 40/65 (61%)
Frame = -1 / -3
Query: 398 MEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQXXXXXXXXXXXXXXXPT 219
MEHSAG P RLGSVQ*L*IM L CT RIRCC VRSSSWLY P
Sbjct: 282 MEHSAGTPLATRLGSVQ*L*IM*LLCTHRIRCCSVRSSSWLYHSPAAPEAPVPGAASVPM 103
Query: 218 VAPQR 204
+APQR
Sbjct: 102 LAPQR 88
Score = 57.9 bits (120), Expect(2) = 9e-038
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2 / +2
Query: 119 KTDWSHAPFSASYRGFKADAC 181
KTDWSHAPFSASYRGFKADAC
Sbjct: 2 KTDWSHAPFSASYRGFKADAC 64
Score = 42.8 bits (87), Expect(2) = 3e-021
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -3 / -3
Query: 177 ASALNPR*EAEKGAWDQSVL 118
ASAL PR*EAE GAWDQSVL
Sbjct: 60 ASALKPR*EAENGAWDQSVL 1
>gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017J11f, mRNA sequence
Length = 876
Score = 143 bits (306), Expect(2) = 8e-037
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+NLE KG+AFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 520 IRDFKNLEGKGIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 699
Score = 114 bits (243), Expect = 7e-025
Identities = 50/64 (78%), Positives = 51/64 (79%)
Frame = -3 / -2
Query: 192 RDGXQASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLR 13
R ASAL PR*EAE GAWDQSVLTRPPCVAQSSAF RLE*SR+GW LGNA P SR
Sbjct: 710 RSTTHASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLE*SRMGWFLGNAIPFPSRFL 531
Query: 12 KSLI 1
KSLI
Sbjct: 530 KSLI 519
Score = 30.9 bits (61), Expect(2) = 8e-037
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +1
Query: 268 DWYNQELDLTLQQRMRWVQ 324
+W+NQE DLTL RW +
Sbjct: 790 EWFNQERDLTLINGFRWAR 846
>gb|BU971930.1|BU971930 HB20B14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20B14
5-PRIME, mRNA sequence
Length = 387
Score = 139 bits (299), Expect(3) = 1e-036
Identities = 54/60 (90%), Positives = 57/60 (95%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+NLE KG+A PK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 93 IRDFKNLEGKGIAXPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 272
Score = 108 bits (230), Expect = 5e-023
Identities = 47/59 (79%), Positives = 48/59 (81%)
Frame = -3 / -3
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASAL PR*EAE GAWDQSV TRPPCVAQSSAF RLE*SR+GW LG A P SR KSLI
Sbjct: 268 ASALKPR*EAENGAWDQSVFTRPPCVAQSSAFQRLE*SRMGWFLGKAIPFPSRFLKSLI 92
Score = 26.3 bits (51), Expect(3) = 1e-036
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / +3
Query: 268 DWYNQELDLTLQ 303
+WYNQEL LT Q
Sbjct: 351 EWYNQELHLTRQ 386
Score = 25.4 bits (49), Expect(3) = 1e-036
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 190 AGGRTRCGATV 222
AGGR RCGA+V
Sbjct: 282 AGGRPRCGASV 314
>gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016C04f, mRNA sequence
Length = 831
Score = 143 bits (306), Expect(2) = 2e-035
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+NLE KG+AFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 517 IRDFKNLEGKGIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 696
Score = 112 bits (240), Expect = 2e-024
Identities = 49/59 (83%), Positives = 50/59 (84%)
Frame = -3 / -2
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASAL PR*EAE GAWDQSVLTRPPCVAQSSAF RLE*SR+GW LGNA P SR KSLI
Sbjct: 692 ASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLE*SRMGWFLGNAIPFPSRFLKSLI 516
Score = 25.8 bits (50), Expect(2) = 2e-035
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQR 309
WY QEL LTL QR
Sbjct: 791 WYIQELALTLHQR 829
>gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06L16r 3', mRNA sequence
Length = 700
Score = 143 bits (307), Expect(2) = 1e-034
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +2 / -1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDFRN+E KG+AFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGFKADAC
Sbjct: 250 IRDFRNMEGKGIAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 71
Score = 106 bits (226), Expect = 2e-022
Identities = 47/59 (79%), Positives = 47/59 (79%)
Frame = -3 / +3
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASAL PR*EAE GAWDQSVLTRPPCVAQSSAF RLE SRIGW LG A P S KSLI
Sbjct: 75 ASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLEYSRIGWFLGKAIPFPSMFLKSLI 251
Score = 23.1 bits (44), Expect(2) = 1e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1 / -1
Query: 193 GGRTRCGATV 222
GGR RCGA++
Sbjct: 58 GGRPRCGASI 29
>gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. vulgare cDNA clone HV11B18
3-PRIME, mRNA sequence
Length = 540
Score = 82.6 bits (174), Expect(2) = 1e-030
Identities = 30/50 (60%), Positives = 40/50 (80%)
Frame = +2 / -3
Query: 32 GVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
GV + +SQ MR+Y+S+ +A++WATQGGRV+TDWS APF ASY+G A C
Sbjct: 469 GVPYLRSQAMRVYASVWDAEEWATQGGRVRTDWSRAPFVASYKGLAASGC 320
Score = 70.3 bits (147), Expect(2) = 1e-030
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +1 / -3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W QELD T R++WVQ+ YMIYNYCTD R++ G P EC+ +*
Sbjct: 277 WMYQELDATALDRLQWVQKNYMIYNYCTDTWRFKDGAPPECASK* 143
>gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. vulgare cDNA clone HP07O06
5-PRIME, mRNA sequence
Length = 533
Score = 82.6 bits (174), Expect(2) = 1e-030
Identities = 30/50 (60%), Positives = 40/50 (80%)
Frame = +2 / +2
Query: 32 GVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
GV + +SQ MR+Y+S+ +A++WATQGGRV+TDWS APF ASY+G A C
Sbjct: 158 GVPYLRSQAMRVYASVWDAEEWATQGGRVRTDWSRAPFVASYKGLAASGC 307
Score = 70.3 bits (147), Expect(2) = 1e-030
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W QELD T R++WVQ+ YMIYNYCTD R++ G P EC+ +*
Sbjct: 350 WMYQELDATALDRLQWVQKNYMIYNYCTDTWRFKDGAPPECASK* 484
>gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010E08f, mRNA sequence
Length = 788
Score = 132 bits (283), Expect = 2e-030
Identities = 51/60 (85%), Positives = 56/60 (93%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+NLE KG+AFPK+QPMRLYS+L NADDWATQGGRVKTDWSHAPFSA RGFKA+AC
Sbjct: 508 IRDFKNLEGKGIAFPKNQPMRLYSNLWNADDWATQGGRVKTDWSHAPFSAFNRGFKANAC 687
Score = 104 bits (221), Expect = 8e-022
Identities = 45/59 (76%), Positives = 47/59 (79%)
Frame = -3 / -1
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
A AL PR +AE GAWDQSV TRPPCVAQSSAF RLE*SR+GW LGNA P SR KSLI
Sbjct: 683 ALALKPRLKAENGAWDQSVFTRPPCVAQSSAFQRLE*SRMGWFLGNAIPFPSRFLKSLI 507
>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase
Length = 1175
Score = 104 bits (222), Expect(2) = 5e-030
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 587 IRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 766
Score = 46.4 bits (95), Expect(2) = 5e-030
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / +2
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 833 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 922
>gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j23 5', mRNA sequence
Length = 612
Score = 104 bits (222), Expect(2) = 5e-030
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 178 IRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 357
Score = 46.4 bits (95), Expect(2) = 5e-030
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / +1
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 424 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 513
>gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j23 3', mRNA sequence
Length = 571
Score = 104 bits (222), Expect(2) = 5e-030
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +2 / -3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 533 IRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 354
Score = 46.4 bits (95), Expect(2) = 5e-030
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / -3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 287 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 198
>gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. vulgare cDNA clone HL01D12
3-PRIME, mRNA sequence
Length = 531
Score = 104 bits (222), Expect(2) = 5e-030
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 57 IRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 236
Score = 46.4 bits (95), Expect(2) = 5e-030
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / +3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 303 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 392
>gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c01 5', mRNA sequence
Length = 505
Score = 104 bits (222), Expect(2) = 5e-030
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 93 IRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 272
Score = 46.4 bits (95), Expect(2) = 5e-030
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / +3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 339 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 428
>gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015H17f, mRNA sequence
Length = 768
Score = 131 bits (280), Expect = 6e-030
Identities = 49/60 (81%), Positives = 56/60 (93%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDFRN+E KG+AFPK+QPMRLYSSL NA+DWATQGGRVKTDWSHAPF++SYR F+AD C
Sbjct: 445 IRDFRNMEGKGIAFPKNQPMRLYSSLWNANDWATQGGRVKTDWSHAPFTSSYRRFEADTC 624
>gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005K17f, mRNA sequence
Length = 831
Score = 126 bits (270), Expect = 1e-028
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+NLE KG+AFPK+QPMRLYSSL NADDWAT GGRVKTDWSHAPFS YRG +A C
Sbjct: 527 IRDFKNLEGKGIAFPKNQPMRLYSSLWNADDWATHGGRVKTDWSHAPFSGFYRGLQAXXC 706
>gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c01 3', mRNA sequence
Length = 628
Score = 99.1 bits (210), Expect(2) = 2e-028
Identities = 38/56 (67%), Positives = 42/56 (75%)
Frame = +2 / -1
Query: 14 RNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
R + GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 574 RTARTSGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 407
Score = 46.4 bits (95), Expect(2) = 2e-028
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / -1
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 340 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 251
>gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_G13 5', mRNA sequence
Length = 525
Score = 124 bits (265), Expect = 7e-028
Identities = 48/60 (80%), Positives = 54/60 (90%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV+FPKSQPMRLY+SL NADDWATQGGRVKTDWS APF AS+R F ADAC
Sbjct: 303 IRDFKNHEARGVSFPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADAC 482
>gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02B10_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 575
Score = 96.8 bits (205), Expect(2) = 1e-027
Identities = 37/50 (74%), Positives = 40/50 (80%)
Frame = +2 / +3
Query: 32 GVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 6 GVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 155
Score = 46.4 bits (95), Expect(2) = 1e-027
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / +3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 222 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 311
>gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L03
3-PRIME, mRNA sequence
Length = 378
Score = 104 bits (222), Expect(2) = 1e-027
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 57 IRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 236
Score = 38.6 bits (78), Expect(2) = 1e-027
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1 / +3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCT 354
Q+LD +R+ WV++++ IYNYCT
Sbjct: 303 QDLDAAQYRRLAWVRKEHTIYNYCT 377
>gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55I22
5-PRIME, mRNA sequence
Length = 397
Score = 95.0 bits (201), Expect(2) = 4e-027
Identities = 36/50 (72%), Positives = 39/50 (78%)
Frame = +2 / +2
Query: 32 GVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
G +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 2 GTRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 151
Score = 46.4 bits (95), Expect(2) = 4e-027
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / +2
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 218 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 307
>gb|AL500467.1|AL500467 AL500467 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06M03r 3', mRNA sequence
Length = 469
Score = 70.3 bits (147), Expect(3) = 6e-027
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +1 / -3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W QELD T R++WVQ+ YMIYNYCTD R++ G P EC+ +*
Sbjct: 257 WMYQELDATALDRLQWVQKNYMIYNYCTDTWRFKDGAPPECASK* 123
Score = 48.3 bits (99), Expect(3) = 6e-027
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2 / -3
Query: 107 GGRVKTDWSHAPFSASYRGFKADAC 181
GGRV+TDWS APF ASY+G A C
Sbjct: 374 GGRVRTDWSRAPFVASYKGLAASGC 300
Score = 40.0 bits (81), Expect(3) = 6e-027
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +2 / -1
Query: 32 GVAFPKSQPMRLYSSLLNADDWATQGG 112
GV + +SQ MR+Y+S+ +A++WATQ G
Sbjct: 448 GVPYLRSQAMRVYASVWDAEEWATQAG 368
>gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e01 3', mRNA sequence
Length = 541
Score = 94.1 bits (199), Expect(2) = 7e-027
Identities = 36/49 (73%), Positives = 39/49 (79%)
Frame = +2 / -1
Query: 35 VAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
V +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 541 VRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 395
Score = 46.4 bits (95), Expect(2) = 7e-027
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / -1
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 328 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 239
>gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e01 5', mRNA sequence
Length = 566
Score = 90.0 bits (190), Expect(2) = 1e-025
Identities = 35/48 (72%), Positives = 37/48 (77%)
Frame = +2 / +1
Query: 38 AFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
A P PM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 4 AVPLRPPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 147
Score = 46.4 bits (95), Expect(2) = 1e-025
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / +1
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 214 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 303
>gb|CB858845.1|CB858845 HI08H24w HI Hordeum vulgare subsp. vulgare cDNA clone HI08H24
3-PRIME, mRNA sequence
Length = 488
Score = 102 bits (218), Expect(3) = 3e-024
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +1 / -1
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSM 399
+WYNQELDLT QQRMRWVQ YMIYNYCTDPKR+ QG+PAECSM
Sbjct: 386 EWYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRFAQGVPAECSM 255
Score = 23.5 bits (45), Expect(3) = 3e-024
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2 / -1
Query: 158 RGFKADAC 181
RGFKADAC
Sbjct: 488 RGFKADAC 465
Score = 23.1 bits (44), Expect(3) = 3e-024
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / -1
Query: 190 AGGRTRCGATV 222
AGGR CGA+V
Sbjct: 455 AGGRPHCGASV 423
>gb|BQ663388.1|BQ663388 HU02G22u HU Hordeum vulgare subsp. vulgare cDNA clone HU02G22
3-PRIME, mRNA sequence
Length = 530
Score = 92.3 bits (195), Expect(2) = 7e-024
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +2 / -1
Query: 5 RDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
R +N G +P QPMR++S++ NADDWATQGGRVKTDW+ APF+A +R +KA +C
Sbjct: 530 RQIKNKMMNGSPYPNYQPMRVFSTIWNADDWATQGGRVKTDWTQAPFTAYFRNYKATSC 354
Score = 38.2 bits (77), Expect(2) = 7e-024
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1 / -1
Query: 274 YNQELDLTLQQRMRWVQRKYMIYNYCTDPKR 366
+NQ+ D QQ+++ V KY +Y++C D KR
Sbjct: 302 FNQQQDQMQQQQVKEVDAKYKVYDFCDDSKR 210
>gb|CA001491.1|CA001491 HS17J24u HS Hordeum vulgare subsp. vulgare cDNA clone HS17J24
3-PRIME, mRNA sequence
Length = 522
Score = 84.0 bits (177), Expect(2) = 3e-023
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1 / -2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQEL +RMRWVQRK+MIYNYCTDPKR QG+PAEC ++*
Sbjct: 389 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 255
Score = 44.1 bits (90), Expect(2) = 3e-023
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +2 / -2
Query: 119 KTDWSHAPFSASYRGFKADAC 181
KTDWS APF AS+R F ADAC
Sbjct: 521 KTDWSKAPFVASFRNFNADAC 459
>gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03O01r 3', mRNA sequence
Length = 497
Score = 80.8 bits (170), Expect(2) = 6e-023
Identities = 31/39 (79%), Positives = 32/39 (82%)
Frame = +2 / -3
Query: 65 LYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 495 LYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 379
Score = 46.4 bits (95), Expect(2) = 6e-023
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1 / -3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
Q+LD +R+ WV++++ IYNYCTD +RY
Sbjct: 312 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 223
>gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. vulgare cDNA clone HX07G17
3-PRIME, mRNA sequence
Length = 606
Score = 68.0 bits (142), Expect(2) = 6e-022
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +2 / -1
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
+P ++PM ++++L + WATQ G+V DWS APF SYRG+ ADAC
Sbjct: 504 YPGAKPMSVHATLWDGSYWATQKGKVPVDWSGAPFVVSYRGYSADAC 364
Score = 56.1 bits (116), Expect(2) = 6e-022
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1 / -1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +++LD + + W +R YM YNYC D R+ QG PAECS
Sbjct: 312 WMDRQLDDAERGTVAWARRDYMRYNYCDDGWRFPQGFPAECS 187
>gb|AV915915.1|AV915915 AV915915 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16j19 5', mRNA sequence
Length = 331
Score = 104 bits (222), Expect = 6e-022
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 85 IRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 264
>gb|BQ471752.1|BQ471752 HV03F21r HV Hordeum vulgare subsp. vulgare cDNA clone HV03F21
5-PRIME, mRNA sequence
Length = 502
Score = 104 bits (222), Expect = 6e-022
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 280 IRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 459
>gb|BM100605.2|BM100605 EBma01_SQ005_L10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_L10 5', mRNA sequence
Length = 414
Score = 104 bits (222), Expect = 6e-022
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P QPM+LYSSL NADDWAT+GGR KTDWS APF ASYRGF D C
Sbjct: 156 IRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 335
>gb|BE422297.1|BE422297 HWM022cF.08r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM022cF.08, mRNA sequence
Length = 1394
Score = 101 bits (216), Expect = 4e-021
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +1 / +1
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSM 399
+WYNQELDLTLQQRMRWVQ YMIYNYCTDPKR +G+PAECSM
Sbjct: 151 EWYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECSM 282
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 286,787,725
Number of Sequences: 312970
Number of extensions: 4396103
Number of successful extensions: 55559
Number of sequences better than 1.0e-020: 68
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9010200146
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)