TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.9
(1195 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442103.2|BM442103 EBan01_SQ002_D11_R anther, yellow st... 240 1e-062
gb|BE420880.1|BE420880 HWM003.E05 ITEC HWM Barley Leaf Libr... 122 2e-046
gb|CK125352.1|CK125352 BES1824107m07 BES1824 Hordeum vulgar... 147 5e-045
gb|BM442520.2|BM442520 EBan01_SQ003_G14_R anther, yellow st... 177 8e-044
gb|CV055163.1|CV055163 BNEL117e7 Barley EST endosperm libra... 117 1e-040
gb|AL505038.1|AL505038 AL505038 Hordeum vulgare Barke roots... 145 5e-034
gb|CV063350.1|CV063350 BNEL89d11 Barley EST endosperm libra... 117 5e-032
gb|BU996673.1|BU996673 HM14F23r HM Hordeum vulgare subsp. v... 135 4e-031
gb|CV058428.1|CV058428 BNEL37h7 Barley EST endosperm librar... 117 5e-029
gb|AJ461534.1|AJ461534 AJ461534 S00002 Hordeum vulgare subs... 127 9e-029
gb|CV059576.1|CV059576 BNEL49f3 Barley EST endosperm librar... 114 1e-024
gb|AJ462026.1|AJ462026 AJ462026 S00002 Hordeum vulgare subs... 104 1e-021
>gb|BM442103.2|BM442103 EBan01_SQ002_D11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_D11 5', mRNA sequence
Length = 676
Score = 240 bits (518), Expect = 1e-062
Identities = 97/125 (77%), Positives = 107/125 (85%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RSFRWNLTASAARPNPQGSYHYGQINITRTIKL+ RGKVDGKER+A NGVSH D E
Sbjct: 302 NQWRSFRWNLTASAARPNPQGSYHYGQINITRTIKLSTSRGKVDGKERYALNGVSHADAE 481
Query: 185 TPVKLAEYFNASDGVFKYNLIGDVPPSNTAPTKMAPNVIRAEFRTFIEVVFENPEKSIDT 364
TP+KLAEYFNA+ GVF+YNLI D PP K+APNVI AE RT+IEVVFENPE+SIDT
Sbjct: 482 TPLKLAEYFNATKGVFEYNLITDTPPKEGTLIKLAPNVITAEHRTYIEVVFENPERSIDT 661
Query: 365 IHIDG 379
H++G
Sbjct: 662 FHLNG 676
Score = 207 bits (446), Expect = 1e-052
Identities = 94/125 (75%), Positives = 99/125 (79%)
Frame = -2 / -2
Query: 378 PSMWMVSMLFSGFSKTTSMKVRNSARMTLGAILVGAVLEGGTSPMRLYLNTPSLALKYSA 199
P W VSML SGFSKTTSM VR SA MTLGA L+ GG S MRLY NTP +ALKYSA
Sbjct: 675 PLRWKVSMLLSGFSKTTSM*VRCSAVMTLGASLMSVPSLGGVSVMRLYSNTPLVALKYSA 496
Query: 198 SLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQRK 19
SL GVS S +TPL+A LSLPSTLPR + SLMVRVMLIWP*W DPCGLG AALAVRFQRK
Sbjct: 495 SLRGVSASAWETPLRAYLSLPSTLPRLVESLMVRVMLIWP*W*DPCGLGLAALAVRFQRK 316
Query: 18 DLHWL 4
DLHWL
Sbjct: 315 DLHWL 301
Score = 122 bits (260), Expect(2) = 8e-030
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = +1 / +1
Query: 4 QPVQVLPLEPDGQRGAAQPAGVVPLRPDQHHPHHQARHGPRQGRRQGEVRLQRRVAR 174
QPV+VLPLEPDGQR AQPAGV+PLRPDQHHPHHQA H PRQGRRQGEVR QRR+ R
Sbjct: 301 QPVEVLPLEPDGQRRQAQPAGVLPLRPDQHHPHHQALHQPRQGRRQGEVRPQRRLPR 471
Score = 85.8 bits (181), Expect(2) = 2e-032
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -3 / -3
Query: 116 WRA*WCG*C*SGRSGTTPAGWAAPRWPSGSSGRTCTG 6
WRA*WCG*C*SGRSG TPAGWA RWPSGSSGRT TG
Sbjct: 413 WRA*WCG*C*SGRSGRTPAGWAWRRWPSGSSGRTSTG 303
Score = 74.4 bits (156), Expect(2) = 2e-032
Identities = 35/48 (72%), Positives = 38/48 (79%)
Frame = -1 / -1
Query: 253 VPDEVVLEHAVAGVEVLGELDGGFRVHVRHAVEGEPLLAVDLAAAHGE 110
V DEVVLEH++ GVEVLGEL+G V V AVEG PLLAVDLAAA GE
Sbjct: 550 VGDEVVLEHSLGGVEVLGELEGRLGVGVGDAVEGVPLLAVDLAAAGGE 407
Score = 29.0 bits (57), Expect(2) = 8e-030
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1 / +1
Query: 277 HQDGPQRHPRRVPH 318
HQ PQRH RR PH
Sbjct: 574 HQARPQRHHRRAPH 615
>gb|BE420880.1|BE420880 HWM003.E05 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.E05, mRNA sequence
Length = 890
Score = 122 bits (261), Expect(3) = 2e-046
Identities = 46/113 (40%), Positives = 72/113 (63%)
Frame = +2 / +2
Query: 275 PTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLD 454
P + +VI + ++ F+E+VF+N + + T HIDGYAF+ VGM G+WT +SR TYN D
Sbjct: 350 PPVIGSSVINSTYKNFMEIVFQNNDTKVQTYHIDGYAFWVVGMDYGEWTDSSRGTYNKWD 529
Query: 455 TVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERS 613
VSR T QV+P +WT ++ D+ W++R+ YL ++ Y+ V+ P+ S
Sbjct: 530 GVSRCTTQVFPGAWTGGLLPLDSPAFWNVRTENLGPWYLWQETYLRVVEPDGS 688
Score = 67.0 bits (140), Expect(3) = 2e-046
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKL 112
NQ RS R N+T AARPNPQGS+HYGQIN+T+ KL
Sbjct: 89 NQARSIRMNVTTGAARPNPQGSFHYGQINVTQVYKL 196
Score = 35.4 bits (71), Expect(3) = 2e-046
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2 / +2
Query: 131 VDGKERFAFNGVSHVDPETPVKLAEYFNASD 223
++GK+R NG+S+ P TP++LA+ + +
Sbjct: 218 INGKKRTTLNGISYSPPATPLRLADLYEKKE 310
>gb|CK125352.1|CK125352 BES1824107m07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M077 5-PRIME, mRNA sequence
Length = 930
Score = 147 bits (315), Expect(2) = 5e-045
Identities = 56/128 (43%), Positives = 83/128 (64%)
Frame = +2 / +2
Query: 275 PTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLD 454
P + A +V+ A ++ F+E+VF+N E + T H+DGY+FF VGM G+WTP SR +YN D
Sbjct: 437 PPRRASSVLNASYKGFLEMVFQNNETDVQTYHLDGYSFFVVGMDYGEWTPNSRGSYNKWD 616
Query: 455 TVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNM 634
+SR T QV+P WTAV+++ DN G+W+IR+ + Y G+++YV V P E
Sbjct: 617 AISRSTTQVFPGGWTAVLVSLDNVGIWNIRAEKLDNWYNGQEVYVKVADPLGYNVTEMIA 796
Query: 635 PETSLRCG 658
P+ +L CG
Sbjct: 797 PKXTLYCG 820
Score = 58.3 bits (121), Expect(2) = 5e-045
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKL 112
NQ R+ R N+++ AARPNPQGS+ YG INIT+T L
Sbjct: 176 NQARTIRMNVSSGAARPNPQGSFRYGSINITQTFVL 283
>gb|BM442520.2|BM442520 EBan01_SQ003_G14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_G14 5', mRNA sequence
Length = 341
Score = 177 bits (382), Expect = 8e-044
Identities = 71/86 (82%), Positives = 76/86 (88%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RSFRWNLTASAARPNPQGSYHYGQINITRTIKL+ RGKVDGKER+A NGV H D E
Sbjct: 83 NQWRSFRWNLTASAARPNPQGSYHYGQINITRTIKLSTSRGKVDGKERYALNGVFHADAE 262
Query: 185 TPVKLAEYFNASDGVFKYNLIGDVPP 262
TP+KLAEYFNA+ GVF+YNLI D PP
Sbjct: 263 TPLKLAEYFNATKGVFEYNLITDTPP 340
Score = 159 bits (341), Expect = 4e-038
Identities = 69/86 (80%), Positives = 72/86 (83%)
Frame = -2 / -3
Query: 261 GGTSPMRLYLNTPSLALKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIW 82
GG S MRLY NTP +ALKYSASL GVS S TPL+A LSLPSTLPR + SLMVRVMLIW
Sbjct: 339 GGVSVMRLYSNTPLVALKYSASLRGVSASAWKTPLRAYLSLPSTLPRLVESLMVRVMLIW 160
Query: 81 P*WYDPCGLGRAALAVRFQRKDLHWL 4
P*W DPCGLG AALAVRFQRKDLHWL
Sbjct: 159 P*W*DPCGLGLAALAVRFQRKDLHWL 82
Score = 122 bits (260), Expect = 5e-027
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = +1 / +1
Query: 4 QPVQVLPLEPDGQRGAAQPAGVVPLRPDQHHPHHQARHGPRQGRRQGEVRLQRRVAR 174
QPV+VLPLEPDGQR AQPAGV+PLRPDQHHPHHQA H PRQGRRQGEVR QRR+ R
Sbjct: 82 QPVEVLPLEPDGQRRQAQPAGVLPLRPDQHHPHHQALHQPRQGRRQGEVRPQRRLPR 252
Score = 85.8 bits (181), Expect(2) = 8e-033
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -3 / -1
Query: 116 WRA*WCG*C*SGRSGTTPAGWAAPRWPSGSSGRTCTG 6
WRA*WCG*C*SGRSG TPAGWA RWPSGSSGRT TG
Sbjct: 194 WRA*WCG*C*SGRSGRTPAGWAWRRWPSGSSGRTSTG 84
Score = 75.3 bits (158), Expect(2) = 8e-033
Identities = 35/48 (72%), Positives = 38/48 (79%)
Frame = -1 / -2
Query: 253 VPDEVVLEHAVAGVEVLGELDGGFRVHVRHAVEGEPLLAVDLAAAHGE 110
V DEVVLEH++ GVEVLGEL+G V V AVEG PLLAVDLAAA GE
Sbjct: 331 VGDEVVLEHSLGGVEVLGELEGRLGVGVEDAVEGVPLLAVDLAAAGGE 188
>gb|CV055163.1|CV055163 BNEL117e7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL117e7 5' similar to Oryza sativa,
mRNA sequence
Length = 674
Score = 117 bits (250), Expect(2) = 1e-040
Identities = 47/72 (65%), Positives = 55/72 (76%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS R NLTAS RPNPQGSYHYG IN++RTI+LA G V GK R+ NGVS VD +
Sbjct: 188 NQARSIRTNLTASGPRPNPQGSYHYGSINVSRTIRLANSAGHVGGKPRYGVNGVSFVDAD 367
Query: 185 TPVKLAEYFNAS 220
TP+KLA+Y+N S
Sbjct: 368 TPLKLADYYNIS 403
Score = 70.3 bits (147), Expect(2) = 1e-040
Identities = 27/63 (42%), Positives = 40/63 (63%)
Frame = +2 / +2
Query: 272 APTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLL 451
A K A V+ ++ R+F+EVVFEN E + + H+DGY+ F V M G W S+ +YNL+
Sbjct: 485 AALKKATAVMDSDHRSFVEVVFENSEDGVQSWHLDGYSVFVVRMDKGXWNEESKKSYNLV 664
Query: 452 DTV 460
D +
Sbjct: 665 DAM 673
>gb|AL505038.1|AL505038 AL505038 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07D06V 5', mRNA sequence
Length = 694
Score = 145 bits (311), Expect = 5e-034
Identities = 53/99 (53%), Positives = 71/99 (71%)
Frame = +2 / +3
Query: 275 PTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLD 454
P + +V+ + R ++EVVFEN E + + HIDGYAF+ VGM G+WTPASR YNL D
Sbjct: 39 PAYLQTSVMASNMRDYVEVVFENAEGYVQSWHIDGYAFWVVGMDGGQWTPASRQNYNLRD 218
Query: 455 TVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYL 571
++R+T+QVYP +WTA+ M DN GMW++RS W RQYL
Sbjct: 219 AIARYTLQVYPGAWTAIYMPLDNVGMWNVRSESWGRQYL 335
>gb|CV063350.1|CV063350 BNEL89d11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL89d11 5' similar to
OSJNBa0084K11.18, mRNA sequence
Length = 593
Score = 117 bits (250), Expect(2) = 5e-032
Identities = 47/72 (65%), Positives = 55/72 (76%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS R NLTAS RPNPQGSYHYG IN++RTI+LA G V GK R+ NGVS VD +
Sbjct: 188 NQARSIRTNLTASGPRPNPQGSYHYGSINVSRTIRLANSAGHVGGKPRYGVNGVSFVDAD 367
Query: 185 TPVKLAEYFNAS 220
TP+KLA+Y+N S
Sbjct: 368 TPLKLADYYNIS 403
Score = 40.9 bits (83), Expect(2) = 5e-032
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2 / +2
Query: 272 APTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDG 379
A K A V+ ++ R+F+EVVFEN E + + H+DG
Sbjct: 485 AALKKATAVMDSDHRSFVEVVFENSEDGVQSWHLDG 592
>gb|BU996673.1|BU996673 HM14F23r HM Hordeum vulgare subsp. vulgare cDNA clone HM14F23
5-PRIME, mRNA sequence
Length = 628
Score = 135 bits (290), Expect = 4e-031
Identities = 54/62 (87%), Positives = 56/62 (90%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RSFRWNLTASAARPNPQGSYHYGQINITRTIKL+ RGKVDGKER+A NGVSH D E
Sbjct: 443 NQWRSFRWNLTASAARPNPQGSYHYGQINITRTIKLSTSRGKVDGKERYALNGVSHADAE 622
Query: 185 TP 190
TP
Sbjct: 623 TP 628
Score = 122 bits (260), Expect = 5e-027
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = +1 / +1
Query: 4 QPVQVLPLEPDGQRGAAQPAGVVPLRPDQHHPHHQARHGPRQGRRQGEVRLQRRVAR 174
QPV+VLPLEPDGQR AQPAGV+PLRPDQHHPHHQA H PRQGRRQGEVR QRR+ R
Sbjct: 442 QPVEVLPLEPDGQRRQAQPAGVLPLRPDQHHPHHQALHQPRQGRRQGEVRPQRRLPR 612
Score = 121 bits (259), Expect = 7e-027
Identities = 51/62 (82%), Positives = 54/62 (87%)
Frame = -2 / -2
Query: 189 GVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQRKDLH 10
GVS S +TPL+A LSLPSTLPR + SLMVRVMLIWP*W DPCGLG AALAVRFQRKDLH
Sbjct: 627 GVSASAWETPLRAYLSLPSTLPRLVESLMVRVMLIWP*W*DPCGLGLAALAVRFQRKDLH 448
Query: 9 WL 4
WL
Sbjct: 447 WL 442
Score = 85.8 bits (181), Expect(2) = 1e-021
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -3 / -3
Query: 116 WRA*WCG*C*SGRSGTTPAGWAAPRWPSGSSGRTCTG 6
WRA*WCG*C*SGRSG TPAGWA RWPSGSSGRT TG
Sbjct: 554 WRA*WCG*C*SGRSGRTPAGWAWRRWPSGSSGRTSTG 444
Score = 37.7 bits (76), Expect(2) = 1e-021
Identities = 19/27 (70%), Positives = 19/27 (70%)
Frame = -1 / -1
Query: 190 GGFRVHVRHAVEGEPLLAVDLAAAHGE 110
G V V AVEG PLLAVDLAAA GE
Sbjct: 628 GRLGVGVGDAVEGVPLLAVDLAAAGGE 548
>gb|CV058428.1|CV058428 BNEL37h7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL37h7 5' similar to
OSJNBa0084K11.18, mRNA sequence
Length = 568
Score = 117 bits (250), Expect(2) = 5e-029
Identities = 47/72 (65%), Positives = 55/72 (76%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS R NLTAS RPNPQGSYHYG IN++RTI+LA G V GK R+ NGVS VD +
Sbjct: 188 NQARSIRTNLTASGPRPNPQGSYHYGSINVSRTIRLANSAGHVGGKPRYGVNGVSFVDAD 367
Query: 185 TPVKLAEYFNAS 220
TP+KLA+Y+N S
Sbjct: 368 TPLKLADYYNIS 403
Score = 30.9 bits (61), Expect(2) = 5e-029
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2 / +2
Query: 272 APTKMAPNVIRAEFRTFIEVVFENPE 349
A K A V+ ++ R+F+EVVFEN E
Sbjct: 485 AALKKATAVMDSDHRSFVEVVFENSE 562
>gb|AJ461534.1|AJ461534 AJ461534 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200012C08F1, mRNA sequence
Length = 300
Score = 127 bits (273), Expect = 9e-029
Identities = 44/89 (49%), Positives = 66/89 (74%)
Frame = +2 / +1
Query: 410 GKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYV 589
G+WT R YNL+D +RHT+QVYP W+A++++ DN GMW++RS W+R YLG+QLY+
Sbjct: 13 GQWTENERLNYNLVDAQARHTVQVYPNGWSAILVSLDNQGMWNLRSANWDRHYLGQQLYL 192
Query: 590 SVISPERSLRDEYNMPETSLRCGKVVGLP 676
V + E+SL +EY++P ++ CG+ GLP
Sbjct: 193 RVWTAEQSLSNEYSIPTNAILCGRADGLP 279
>gb|CV059576.1|CV059576 BNEL49f3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL49f3 5' similar to
OSJNBa0084K11.18, mRNA sequence
Length = 502
Score = 114 bits (243), Expect = 1e-024
Identities = 46/72 (63%), Positives = 54/72 (75%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS R NLTAS RPNPQGSYHYG IN++RTI+LA V GK R+ NGVS VD +
Sbjct: 188 NQARSIRTNLTASGPRPNPQGSYHYGSINVSRTIRLANSAXHVGGKPRYGVNGVSFVDAD 367
Query: 185 TPVKLAEYFNAS 220
TP+KLA+Y+N S
Sbjct: 368 TPLKLADYYNIS 403
>gb|AJ462026.1|AJ462026 AJ462026 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200079D08F1, mRNA sequence
Length = 300
Score = 104 bits (221), Expect = 1e-021
Identities = 37/71 (52%), Positives = 51/71 (71%)
Frame = +2 / +1
Query: 458 VSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMP 637
++R+T+QVYP +WTA+ M DN GMW++RS W RQYLG+Q Y+ V SP S RDE +P
Sbjct: 1 IARYTLQVYPGAWTAIYMPLDNVGMWNVRSESWGRQYLGQQFYLRVYSPANSWRDENPIP 180
Query: 638 ETSLRCGKVVG 670
+ +L CG+ G
Sbjct: 181 KNALLCGRASG 213
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 482,555,754
Number of Sequences: 312970
Number of extensions: 7907111
Number of successful extensions: 98194
Number of sequences better than 1.0e-020: 18
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 14376024536
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)