TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2404725.2.2
         (910 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ461534.1|AJ461534  AJ461534 S00002 Hordeum vulgare subs...   127   9e-029
gb|AL505038.1|AL505038  AL505038 Hordeum vulgare Barke roots...   122   2e-027
gb|CK125352.1|CK125352  BES1824107m07 BES1824 Hordeum vulgar...   122   4e-027
gb|AJ462026.1|AJ462026  AJ462026 S00002 Hordeum vulgare subs...   104   7e-022

>gb|AJ461534.1|AJ461534 AJ461534 S00002 Hordeum vulgare subsp. vulgare cDNA clone
           S0000200012C08F1, mRNA sequence
          Length = 300

 Score =  127 bits (272), Expect = 9e-029
 Identities = 44/89 (49%), Positives = 66/89 (74%)
 Frame = -1 / +1

                                                                       
Query: 661 GKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYV 482
           G+WT   R  YNL+D  +RHT+QVYP  W+A++++ DN GMW++RS  W+R YLG+QLY+
Sbjct: 13  GQWTENERLNYNLVDAQARHTVQVYPNGWSAILVSLDNQGMWNLRSANWDRHYLGQQLYL 192

                                        
Query: 481 SVISPERSLRDEYNMPETSLRCGKVVGLP 395
            V + E+SL +EY++P  ++ CG+  GLP
Sbjct: 193 RVWTAEQSLSNEYSIPTNAILCGRADGLP 279



>gb|AL505038.1|AL505038 AL505038 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
           cDNA clone HW07D06V 5', mRNA sequence
          Length = 694

 Score =  122 bits (262), Expect = 2e-027
 Identities = 47/99 (47%), Positives = 64/99 (64%)
 Frame = -1 / +3

                                                                       
Query: 796 PTKMAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLD 617
           P  +  +V+++  R ++ V FEN E  +    I   AF+ VGM  G+WT ASR  YNL D
Sbjct: 39  PAYLQTSVMASNMRDYVEVVFENAEGYVQSWHIDGYAFWVVGMDGGQWTPASRQNYNLRD 218

                                                  
Query: 616 TVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYL 500
            ++R+T+QVYP +WTA+ M  DN GMW+VRS  W RQYL
Sbjct: 219 AIARYTLQVYPGAWTAIYMPLDNVGMWNVRSESWGRQYL 335



>gb|CK125352.1|CK125352 BES1824107m07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
           MPMGp2010M077 5-PRIME, mRNA sequence
          Length = 930

 Score =  122 bits (260), Expect = 4e-027
 Identities = 47/128 (36%), Positives = 76/128 (59%)
 Frame = -1 / +2

                                                                       
Query: 796 PTKMAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLD 617
           P + A +V++A ++ F+ + F+N E  +    +   +FF VGM  G+WT  SR +YN  D
Sbjct: 437 PPRRASSVLNASYKGFLEMVFQNNETDVQTYHLDGYSFFVVGMDYGEWTPNSRGSYNKWD 616

                                                                       
Query: 616 TVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNM 437
            +SR T QV+P  WTAV+++ DN G+W++R+   +  Y G+++YV V  P      E   
Sbjct: 617 AISRSTTQVFPGGWTAVLVSLDNVGIWNIRAEKLDNWYNGQEVYVKVADPLGYNVTEMIA 796

                   
Query: 436 PETSLRCG 413
           P+ +L CG
Sbjct: 797 PKXTLYCG 820



>gb|AJ462026.1|AJ462026 AJ462026 S00002 Hordeum vulgare subsp. vulgare cDNA clone
           S0000200079D08F1, mRNA sequence
          Length = 300

 Score =  104 bits (222), Expect = 7e-022
 Identities = 38/71 (53%), Positives = 51/71 (71%)
 Frame = -1 / +1

                                                                       
Query: 613 VSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMP 434
           ++R+T+QVYP +WTA+ M  DN GMW+VRS  W RQYLG+Q Y+ V SP  S RDE  +P
Sbjct: 1   IARYTLQVYPGAWTAIYMPLDNVGMWNVRSESWGRQYLGQQFYLRVYSPANSWRDENPIP 180

                      
Query: 433 ETSLRCGKVVG 401
           + +L CG+  G
Sbjct: 181 KNALLCGRASG 213



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 329,088,336
Number of Sequences: 312970
Number of extensions: 4565945
Number of successful extensions: 56195
Number of sequences better than 1.0e-020: 6
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10525934750
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)