TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2253513.2.1
(746 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA li... 312 1e-084
gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. v... 298 2e-080
gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA li... 243 6e-064
gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA li... 243 9e-064
gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA li... 243 9e-064
gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA li... 243 9e-064
gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm librar... 226 8e-059
gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgar... 226 8e-059
gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-a... 224 5e-058
gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA li... 223 1e-057
gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. v... 223 1e-057
gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA li... 216 9e-056
gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA li... 216 9e-056
gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. v... 211 3e-054
gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA li... 147 2e-052
gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA li... 203 1e-051
gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA li... 190 6e-048
gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-a... 179 1e-047
gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. v... 187 8e-047
gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA li... 186 1e-046
gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa... 183 7e-046
gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no... 179 2e-044
gb|AV931472.1|AV931472 AV931472 K. Sato unpublished cDNA li... 178 3e-044
gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green... 172 2e-042
gb|AV930935.1|AV930935 AV930935 K. Sato unpublished cDNA li... 163 9e-040
gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA li... 102 2e-035
gb|AV833846.1|AV833846 AV833846 K. Sato unpublished cDNA li... 98 4e-035
gb|BE060385.2|BE060385 HVSMEg0012C17f Hordeum vulgare pre-a... 144 8e-035
gb|BU986456.1|BU986456 HF11O19r HF Hordeum vulgare subsp. v... 146 1e-034
gb|BJ549178.1|BJ549178 BJ549178 K. Sato unpublished cDNA li... 135 3e-031
gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subs... 134 6e-031
gb|BQ460226.1|BQ460226 HA06N23r HA Hordeum vulgare subsp. v... 124 6e-028
gb|BM443862.2|BM443862 EBem09_SQ001_M07_R embryo, 1 Day ger... 118 3e-026
gb|AL510176.1|AL510176 AL510176 Hordeum vulgare Barke devel... 71 2e-022
gb|CA024809.1|CA024809 HZ50F23r HZ Hordeum vulgare subsp. v... 105 3e-022
>gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a14 3', mRNA sequence
Length = 625
Score = 312 bits (676), Expect = 1e-084
Identities = 118/125 (94%), Positives = 121/125 (96%)
Frame = +3 / -3
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMNFFDL+SWRREK TEQYHYWQ QNENR LWKLGTLPPGLITFYSTTKPL+K
Sbjct: 605 NACGWAYGMNFFDLNSWRREKSTEQYHYWQTQNENRLLWKLGTLPPGLITFYSTTKPLDK 426
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFR LWTKYVDYDDS+IRQCN
Sbjct: 425 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCN 246
Query: 363 FAPP* 377
FAPP*
Sbjct: 245 FAPP* 231
Score = 246 bits (532), Expect = 9e-065
Identities = 103/129 (79%), Positives = 112/129 (86%)
Frame = -2 / +1
Query: 388 IKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGL 209
+ + YGGAKLH*R+ ESS*STYFVQ CLNWFIP+SSQGF+ PLKCTTAAFLISSMLMLGL
Sbjct: 220 LPSVYGGAKLH*RMNESS*STYFVQSCLNWFIPISSQGFIFPLKCTTAAFLISSMLMLGL 399
Query: 208 YPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKF 29
YP PRTCQD SRGFVVE* VI PGG+VP+FH+ FSF* CQ*WYCSV FSLLQE RSKKF
Sbjct: 400 YPRPRTCQDLSRGFVVE*NVINPGGNVPNFHSSRFSF*VCQ*WYCSVDFSLLQELRSKKF 579
Query: 28 IPYAHPQAL 2
+P A P AL
Sbjct: 580 MP*AQPHAL 606
Score = 189 bits (408), Expect = 1e-047
Identities = 82/126 (65%), Positives = 101/126 (80%)
Frame = +2 / -2
Query: 2 *CLWMGIRNEFLRS*FLEEGEMY*AVPLLAESE*EQDIMEARNAAPWLDHFLLDNKTSGE 181
*C+W+G+ +E L S*FLEEGE+Y AVPLLA+SE*E ME N AP ++H LLD+K SG+
Sbjct: 606 *CMWLGLWHELL*S*FLEEGEIYRAVPLLADSE*EPATMEVGNIAPRINHILLDHKASGQ 427
Query: 182 ILACSWTWIQS*HQHGGD*KCCCCAFQRQHEALAGHRYEPVQAPLDKVCGL**LIYSSMQ 361
ILAC + + S HQHGGD*K CCCAFQ ++EALAG+ YEPVQA LDK+ GL* L++SSMQ
Sbjct: 426 ILACPGSRV*SKHQHGGD*KRCCCAFQWEYEALAGYWYEPVQAALDKIRGL*RLVHSSMQ 247
Query: 362 FCTAIE 379
FCT I+
Sbjct: 246 FCTTID 229
Score = 174 bits (374), Expect = 6e-043
Identities = 83/127 (65%), Positives = 90/127 (70%)
Frame = +1 / -1
Query: 1 LMPVDGHTE*ISSILILGGGRNVLSSTIIGRIRMRTGHYGS*ERCPLA*SLSTRQQNLWR 180
LM V G * S ILILGGGRN+ SSTI GR+RMRTG+YGS E CP *S STR Q+LW
Sbjct: 607 LMHVAGLMA*TSLILILGGGRNLPSSTITGRLRMRTGYYGSWEHCPQD*SHSTRPQSLWT 428
Query: 181 NLGMFLDLDTILASAWRRLEMLLLCISTAT*SPGWTSV*TSSGTFGQSMWTMMTHIFVNA 360
NLGM I ASAWRRLE LLLCIS *S GW V*TSSG+ GQ+ W M T FVNA
Sbjct: 427 NLGMSWVSGIIQASAWRRLETLLLCISMGI*SLGWILV*TSSGSSGQNTWIMTTRSFVNA 248
Query: 361 ILHRHRR 381
ILH HR+
Sbjct: 247 ILHHHRQ 227
Score = 163 bits (350), Expect = 1e-039
Identities = 78/126 (61%), Positives = 90/126 (71%)
Frame = -3 / +2
Query: 378 SMAVQNCIDEYMSHHSPHTLSKGA*TGSYRCPARASCCR*NAQQQHF*SPPC*C*DCIQV 199
SM VQNCIDE S H+P LS+ A*TGSY+ PA+AS *NAQQQ F*SPPC*C D +
Sbjct: 230 SMVVQNCIDE*TSRHNPRILSRAA*TGSYQYPAKASYSH*NAQQQRF*SPPC*CLDYTRD 409
Query: 198 QEHAKISPEVLLSSRK*SSQGAAFLASIMSCSHSDSANNGTAQYISPSSKNQDRRNSFRM 19
HAKI PE L SSR * GA F SI++ SHS+SA+NGTA+ ISPSSKN D+R+S
Sbjct: 410 PGHAKICPEALWSSRM*LILGAMFPTSIVAGSHSESASNGTAR*ISPSSKN*DQRSSCHK 589
Query: 18 PIHRH* 1
P H H*
Sbjct: 590 PSHMH* 607
Score = 138 bits (296), Expect(2) = 2e-038
Identities = 53/84 (63%), Positives = 70/84 (83%)
Frame = -1 / +3
Query: 377 LWRCKIALTNI*VIIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKS 198
LW CKIALTN V+I+H+ CP++PELVHT++QP LH+ +EMHNSS+SNLLHADA I+ ++
Sbjct: 231 LWWCKIALTNERVVIIHVFCPELPELVHTNIQPRLHIPIEMHNSSVSNLLHADAWIIPET 410
Query: 197 KNMPRFLQRFCCRVESDQARGQRS 126
++MPRF+QR C RVE D + GQ S
Sbjct: 411 QDMPRFVQRLCGRVECD*SWGQCS 482
Score = 40.9 bits (83), Expect(2) = 2e-038
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -1 / +3
Query: 65 FLPPPRIKIEEIHSVCPSTGI 3
FLPPPRIKI+E+H++ P+T I
Sbjct: 543 FLPPPRIKIKEVHAISPATCI 605
>gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D07
5-PRIME, mRNA sequence
Length = 529
Score = 298 bits (645), Expect = 2e-080
Identities = 112/119 (94%), Positives = 115/119 (96%)
Frame = +3 / +2
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMNFFDL+SWRREK TEQYHYWQ QNENR LWKLGTLPPGLITFYSTTKPL+K
Sbjct: 173 NACGWAYGMNFFDLNSWRREKSTEQYHYWQTQNENRLLWKLGTLPPGLITFYSTTKPLDK 352
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 359
SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFR LWTKYVDYDDS+IRQC
Sbjct: 353 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRQLWTKYVDYDDSFIRQC 529
Score = 231 bits (499), Expect = 3e-060
Identities = 97/119 (81%), Positives = 104/119 (87%)
Frame = -2 / -2
Query: 358 H*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDF 179
H*R+ ESS*STYFVQ CLNWFIP+SSQGF+ PLKCTTAAFLISSMLMLGLYP PRTCQD
Sbjct: 528 H*RMNESS*STYFVQSCLNWFIPISSQGFIFPLKCTTAAFLISSMLMLGLYPRPRTCQDL 349
Query: 178 SRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQAL 2
SRGFVVE* VI PGG+VP+FH+ FSF* CQ*WYCSV FSLLQE RSKKF+P A P AL
Sbjct: 348 SRGFVVE*NVINPGGNVPNFHSSRFSF*VCQ*WYCSVDFSLLQELRSKKFMP*AQPHAL 172
Score = 171 bits (369), Expect = 3e-042
Identities = 76/119 (63%), Positives = 94/119 (78%)
Frame = +2 / +1
Query: 2 *CLWMGIRNEFLRS*FLEEGEMY*AVPLLAESE*EQDIMEARNAAPWLDHFLLDNKTSGE 181
*C+W+G+ +E L S*FLEEGE+Y AVPLLA+SE*E ME N AP ++H LLD+K SG+
Sbjct: 172 *CMWLGLWHELL*S*FLEEGEIYRAVPLLADSE*EPATMEVGNIAPRINHILLDHKASGQ 351
Query: 182 ILACSWTWIQS*HQHGGD*KCCCCAFQRQHEALAGHRYEPVQAPLDKVCGL**LIYSSM 358
ILAC + + S HQHGGD*K CCCAFQ ++EALAG+ YEPVQA LDK+ L* L++SSM
Sbjct: 352 ILACPGSRV*SKHQHGGD*KRCCCAFQWEYEALAGYWYEPVQAALDKIRRL*RLVHSSM 528
Score = 152 bits (326), Expect = 2e-036
Identities = 76/119 (63%), Positives = 82/119 (68%)
Frame = +1 / +3
Query: 1 LMPVDGHTE*ISSILILGGGRNVLSSTIIGRIRMRTGHYGS*ERCPLA*SLSTRQQNLWR 180
LM V G * S ILILGGGRN+ SSTI GR+RMRTG+YGS E CP *S STR Q+LW
Sbjct: 171 LMHVAGLMA*TSLILILGGGRNLPSSTITGRLRMRTGYYGSWEHCPQD*SHSTRPQSLWT 350
Query: 181 NLGMFLDLDTILASAWRRLEMLLLCISTAT*SPGWTSV*TSSGTFGQSMWTMMTHIFVN 357
NLGM I ASAWRRLE LLLCIS *S GW V*TSSG+ GQ+ M T FVN
Sbjct: 351 NLGMSWVSGIIQASAWRRLETLLLCISMGI*SLGWILV*TSSGSSGQNTSIMTTRSFVN 527
Score = 144 bits (308), Expect = 7e-034
Identities = 71/119 (59%), Positives = 83/119 (69%)
Frame = -3 / -3
Query: 357 IDEYMSHHSPHTLSKGA*TGSYRCPARASCCR*NAQQQHF*SPPC*C*DCIQVQEHAKIS 178
IDE S H+ LS+ A*TGSY+ PA+AS *NAQQQ F*SPPC*C D + HAKI
Sbjct: 527 IDE*TSRHNRRILSRAA*TGSYQYPAKASYSH*NAQQQRF*SPPC*CLDYTRDPGHAKIC 348
Query: 177 PEVLLSSRK*SSQGAAFLASIMSCSHSDSANNGTAQYISPSSKNQDRRNSFRMPIHRH* 1
PE L SSR * GA F SI++ SHS+SA+NGTA+ ISPSSKN D+R+S P H H*
Sbjct: 347 PEALWSSRM*LILGAMFPTSIVAGSHSESASNGTAR*ISPSSKN*DQRSSCHKPSHMH* 171
Score = 120 bits (257), Expect(2) = 4e-033
Identities = 47/78 (60%), Positives = 64/78 (82%)
Frame = -1 / -1
Query: 359 ALTNI*VIIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKSKNMPRF 180
ALTN V+I+ + CP++PELVHT++QP LH+ +EMHNSS+SNLLHADA I+ ++++MPRF
Sbjct: 529 ALTNERVVIIDVFCPELPELVHTNIQPRLHIPIEMHNSSVSNLLHADAWIIPETQDMPRF 350
Query: 179 LQRFCCRVESDQARGQRS 126
+QR C RVE D + GQ S
Sbjct: 349 VQRLCGRVECD*SWGQCS 296
Score = 40.9 bits (83), Expect(2) = 4e-033
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -1 / -1
Query: 65 FLPPPRIKIEEIHSVCPSTGI 3
FLPPPRIKI+E+H++ P+T I
Sbjct: 235 FLPPPRIKIKEVHAISPATCI 173
>gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o03 3', mRNA sequence
Length = 527
Score = 243 bits (526), Expect = 6e-064
Identities = 93/99 (93%), Positives = 96/99 (96%)
Frame = +3 / -2
Query: 81 HYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHF 260
+YWQ QNENR LWKLGTLPPGLITFYSTTKPL+KSWHVLGLGYNPSISMEEIRNAAVVHF
Sbjct: 526 NYWQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHF 347
Query: 261 NGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAPP* 377
NGNMKPWLDIGMNQFR LWTKYVDYDDS+IRQCNFAPP*
Sbjct: 346 NGNMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCNFAPP* 230
Score = 197 bits (425), Expect = 5e-050
Identities = 82/103 (79%), Positives = 91/103 (88%)
Frame = -2 / +3
Query: 388 IKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGL 209
+ + YGGAKLH*R+ ESS*STYFVQ CLNWFIP+SSQGF+ PLKCTTAAFLISSMLMLGL
Sbjct: 219 LPSVYGGAKLH*RMNESS*STYFVQSCLNWFIPISSQGFIFPLKCTTAAFLISSMLMLGL 398
Query: 208 YPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*W 80
YP PRTCQD SRGFVVE* VI PGG+VP+FH+ FSF* CQ*+
Sbjct: 399 YPRPRTCQDLSRGFVVE*NVINPGGNVPNFHSSRFSF*VCQ*F 527
Score = 148 bits (317), Expect = 4e-035
Identities = 64/99 (64%), Positives = 78/99 (78%)
Frame = +2 / -1
Query: 83 LLAESE*EQDIMEARNAAPWLDHFLLDNKTSGEILACSWTWIQS*HQHGGD*KCCCCAFQ 262
LLA+SE*E ME N AP ++H LLD+K SG+ILAC + + S HQHGGD*K CCCAFQ
Sbjct: 524 LLADSE*EPATMEVGNIAPRINHILLDHKASGQILACPGSRV*SKHQHGGD*KRCCCAFQ 345
Query: 263 RQHEALAGHRYEPVQAPLDKVCGL**LIYSSMQFCTAIE 379
++EALAG+ YEPVQA LDK+ GL* L++SSMQFCT I+
Sbjct: 344 WEYEALAGYWYEPVQAALDKIRGL*RLVHSSMQFCTTID 228
Score = 143 bits (306), Expect = 1e-033
Identities = 65/100 (65%), Positives = 71/100 (71%)
Frame = +1 / -3
Query: 82 IIGRIRMRTGHYGS*ERCPLA*SLSTRQQNLWRNLGMFLDLDTILASAWRRLEMLLLCIS 261
I GR+RMRTG+YGS E CP *S STR Q+LW NLGM I ASAWRRLE LLLCIS
Sbjct: 525 ITGRLRMRTGYYGSWEHCPQD*SHSTRPQSLWTNLGMSWVSGIIQASAWRRLETLLLCIS 346
Query: 262 TAT*SPGWTSV*TSSGTFGQSMWTMMTHIFVNAILHRHRR 381
*S GW V*TSSG+ GQ+ W M T FVNAILH HR+
Sbjct: 345 MGI*SLGWILV*TSSGSSGQNTWIMTTRSFVNAILHHHRQ 226
Score = 138 bits (296), Expect = 3e-032
Identities = 53/84 (63%), Positives = 70/84 (83%)
Frame = -1 / +2
Query: 377 LWRCKIALTNI*VIIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKS 198
LW CKIALTN V+I+H+ CP++PELVHT++QP LH+ +EMHNSS+SNLLHADA I+ ++
Sbjct: 230 LWWCKIALTNERVVIIHVFCPELPELVHTNIQPRLHIPIEMHNSSVSNLLHADAWIIPET 409
Query: 197 KNMPRFLQRFCCRVESDQARGQRS 126
++MPRF+QR C RVE D + GQ S
Sbjct: 410 QDMPRFVQRLCGRVECD*SWGQCS 481
Score = 127 bits (273), Expect = 5e-029
Identities = 61/99 (61%), Positives = 70/99 (70%)
Frame = -3 / +1
Query: 378 SMAVQNCIDEYMSHHSPHTLSKGA*TGSYRCPARASCCR*NAQQQHF*SPPC*C*DCIQV 199
SM VQNCIDE S H+P LS+ A*TGSY+ PA+AS *NAQQQ F*SPPC*C D +
Sbjct: 229 SMVVQNCIDE*TSRHNPRILSRAA*TGSYQYPAKASYSH*NAQQQRF*SPPC*CLDYTRD 408
Query: 198 QEHAKISPEVLLSSRK*SSQGAAFLASIMSCSHSDSANN 82
HAKI PE L SSR * GA F SI++ SHS+SA+N
Sbjct: 409 PGHAKICPEALWSSRM*LILGAMFPTSIVAGSHSESASN 525
>gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o03 5', mRNA sequence
Length = 586
Score = 243 bits (525), Expect = 9e-064
Identities = 93/98 (94%), Positives = 95/98 (96%)
Frame = +3 / +2
Query: 84 YWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFN 263
YWQ QNENR LWKLGTLPPGLITFYSTTKPL+KSWHVLGLGYNPSISMEEIRNAAVVHFN
Sbjct: 5 YWQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFN 184
Query: 264 GNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAPP* 377
GNMKPWLDIGMNQFR LWTKYVDYDDS+IRQCNFAPP*
Sbjct: 185 GNMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCNFAPP* 298
Score = 197 bits (424), Expect = 7e-050
Identities = 82/102 (80%), Positives = 90/102 (88%)
Frame = -2 / -2
Query: 388 IKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGL 209
+ + YGGAKLH*R+ ESS*STYFVQ CLNWFIP+SSQGF+ PLKCTTAAFLISSMLMLGL
Sbjct: 309 LPSVYGGAKLH*RMNESS*STYFVQSCLNWFIPISSQGFIFPLKCTTAAFLISSMLMLGL 130
Query: 208 YPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ* 83
YP PRTCQD SRGFVVE* VI PGG+VP+FH+ FSF* CQ*
Sbjct: 129 YPRPRTCQDLSRGFVVE*NVINPGGNVPNFHSSRFSF*VCQ* 4
Score = 148 bits (317), Expect = 4e-035
Identities = 64/99 (64%), Positives = 78/99 (78%)
Frame = +2 / +1
Query: 83 LLAESE*EQDIMEARNAAPWLDHFLLDNKTSGEILACSWTWIQS*HQHGGD*KCCCCAFQ 262
LLA+SE*E ME N AP ++H LLD+K SG+ILAC + + S HQHGGD*K CCCAFQ
Sbjct: 4 LLADSE*EPATMEVGNIAPRINHILLDHKASGQILACPGSRV*SKHQHGGD*KRCCCAFQ 183
Query: 263 RQHEALAGHRYEPVQAPLDKVCGL**LIYSSMQFCTAIE 379
++EALAG+ YEPVQA LDK+ GL* L++SSMQFCT I+
Sbjct: 184 WEYEALAGYWYEPVQAALDKIRGL*RLVHSSMQFCTTID 300
Score = 143 bits (306), Expect = 1e-033
Identities = 65/100 (65%), Positives = 71/100 (71%)
Frame = +1 / +3
Query: 82 IIGRIRMRTGHYGS*ERCPLA*SLSTRQQNLWRNLGMFLDLDTILASAWRRLEMLLLCIS 261
I GR+RMRTG+YGS E CP *S STR Q+LW NLGM I ASAWRRLE LLLCIS
Sbjct: 3 ITGRLRMRTGYYGSWEHCPQD*SHSTRPQSLWTNLGMSWVSGIIQASAWRRLETLLLCIS 182
Query: 262 TAT*SPGWTSV*TSSGTFGQSMWTMMTHIFVNAILHRHRR 381
*S GW V*TSSG+ GQ+ W M T FVNAILH HR+
Sbjct: 183 MGI*SLGWILV*TSSGSSGQNTWIMTTRSFVNAILHHHRQ 302
Score = 138 bits (296), Expect = 3e-032
Identities = 53/84 (63%), Positives = 70/84 (83%)
Frame = -1 / -1
Query: 377 LWRCKIALTNI*VIIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKS 198
LW CKIALTN V+I+H+ CP++PELVHT++QP LH+ +EMHNSS+SNLLHADA I+ ++
Sbjct: 298 LWWCKIALTNERVVIIHVFCPELPELVHTNIQPRLHIPIEMHNSSVSNLLHADAWIIPET 119
Query: 197 KNMPRFLQRFCCRVESDQARGQRS 126
++MPRF+QR C RVE D + GQ S
Sbjct: 118 QDMPRFVQRLCGRVECD*SWGQCS 47
Score = 127 bits (273), Expect = 5e-029
Identities = 61/99 (61%), Positives = 70/99 (70%)
Frame = -3 / -3
Query: 378 SMAVQNCIDEYMSHHSPHTLSKGA*TGSYRCPARASCCR*NAQQQHF*SPPC*C*DCIQV 199
SM VQNCIDE S H+P LS+ A*TGSY+ PA+AS *NAQQQ F*SPPC*C D +
Sbjct: 299 SMVVQNCIDE*TSRHNPRILSRAA*TGSYQYPAKASYSH*NAQQQRF*SPPC*CLDYTRD 120
Query: 198 QEHAKISPEVLLSSRK*SSQGAAFLASIMSCSHSDSANN 82
HAKI PE L SSR * GA F SI++ SHS+SA+N
Sbjct: 119 PGHAKICPEALWSSRM*LILGAMFPTSIVAGSHSESASN 3
>gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41d13 5', mRNA sequence
Length = 589
Score = 243 bits (525), Expect = 9e-064
Identities = 93/98 (94%), Positives = 95/98 (96%)
Frame = +3 / +2
Query: 84 YWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFN 263
YWQ QNENR LWKLGTLPPGLITFYSTTKPL+KSWHVLGLGYNPSISMEEIRNAAVVHFN
Sbjct: 8 YWQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFN 187
Query: 264 GNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAPP* 377
GNMKPWLDIGMNQFR LWTKYVDYDDS+IRQCNFAPP*
Sbjct: 188 GNMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCNFAPP* 301
Score = 197 bits (424), Expect = 7e-050
Identities = 82/102 (80%), Positives = 90/102 (88%)
Frame = -2 / -2
Query: 388 IKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGL 209
+ + YGGAKLH*R+ ESS*STYFVQ CLNWFIP+SSQGF+ PLKCTTAAFLISSMLMLGL
Sbjct: 312 LPSVYGGAKLH*RMNESS*STYFVQSCLNWFIPISSQGFIFPLKCTTAAFLISSMLMLGL 133
Query: 208 YPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ* 83
YP PRTCQD SRGFVVE* VI PGG+VP+FH+ FSF* CQ*
Sbjct: 132 YPRPRTCQDLSRGFVVE*NVINPGGNVPNFHSSRFSF*VCQ* 7
Score = 148 bits (317), Expect = 4e-035
Identities = 64/99 (64%), Positives = 78/99 (78%)
Frame = +2 / +1
Query: 83 LLAESE*EQDIMEARNAAPWLDHFLLDNKTSGEILACSWTWIQS*HQHGGD*KCCCCAFQ 262
LLA+SE*E ME N AP ++H LLD+K SG+ILAC + + S HQHGGD*K CCCAFQ
Sbjct: 7 LLADSE*EPATMEVGNIAPRINHILLDHKASGQILACPGSRV*SKHQHGGD*KRCCCAFQ 186
Query: 263 RQHEALAGHRYEPVQAPLDKVCGL**LIYSSMQFCTAIE 379
++EALAG+ YEPVQA LDK+ GL* L++SSMQFCT I+
Sbjct: 187 WEYEALAGYWYEPVQAALDKIRGL*RLVHSSMQFCTTID 303
Score = 143 bits (306), Expect = 1e-033
Identities = 65/100 (65%), Positives = 71/100 (71%)
Frame = +1 / +3
Query: 82 IIGRIRMRTGHYGS*ERCPLA*SLSTRQQNLWRNLGMFLDLDTILASAWRRLEMLLLCIS 261
I GR+RMRTG+YGS E CP *S STR Q+LW NLGM I ASAWRRLE LLLCIS
Sbjct: 6 ITGRLRMRTGYYGSWEHCPQD*SHSTRPQSLWTNLGMSWVSGIIQASAWRRLETLLLCIS 185
Query: 262 TAT*SPGWTSV*TSSGTFGQSMWTMMTHIFVNAILHRHRR 381
*S GW V*TSSG+ GQ+ W M T FVNAILH HR+
Sbjct: 186 MGI*SLGWILV*TSSGSSGQNTWIMTTRSFVNAILHHHRQ 305
Score = 138 bits (296), Expect = 3e-032
Identities = 53/84 (63%), Positives = 70/84 (83%)
Frame = -1 / -1
Query: 377 LWRCKIALTNI*VIIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKS 198
LW CKIALTN V+I+H+ CP++PELVHT++QP LH+ +EMHNSS+SNLLHADA I+ ++
Sbjct: 301 LWWCKIALTNERVVIIHVFCPELPELVHTNIQPRLHIPIEMHNSSVSNLLHADAWIIPET 122
Query: 197 KNMPRFLQRFCCRVESDQARGQRS 126
++MPRF+QR C RVE D + GQ S
Sbjct: 121 QDMPRFVQRLCGRVECD*SWGQCS 50
Score = 127 bits (273), Expect = 5e-029
Identities = 61/99 (61%), Positives = 70/99 (70%)
Frame = -3 / -3
Query: 378 SMAVQNCIDEYMSHHSPHTLSKGA*TGSYRCPARASCCR*NAQQQHF*SPPC*C*DCIQV 199
SM VQNCIDE S H+P LS+ A*TGSY+ PA+AS *NAQQQ F*SPPC*C D +
Sbjct: 302 SMVVQNCIDE*TSRHNPRILSRAA*TGSYQYPAKASYSH*NAQQQRF*SPPC*CLDYTRD 123
Query: 198 QEHAKISPEVLLSSRK*SSQGAAFLASIMSCSHSDSANN 82
HAKI PE L SSR * GA F SI++ SHS+SA+N
Sbjct: 122 PGHAKICPEALWSSRM*LILGAMFPTSIVAGSHSESASN 6
>gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41d13 3', mRNA sequence
Length = 525
Score = 243 bits (525), Expect = 9e-064
Identities = 93/98 (94%), Positives = 95/98 (96%)
Frame = +3 / -1
Query: 84 YWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFN 263
YWQ QNENR LWKLGTLPPGLITFYSTTKPL+KSWHVLGLGYNPSISMEEIRNAAVVHFN
Sbjct: 522 YWQTQNENRLLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFN 343
Query: 264 GNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAPP* 377
GNMKPWLDIGMNQFR LWTKYVDYDDS+IRQCNFAPP*
Sbjct: 342 GNMKPWLDIGMNQFRQLWTKYVDYDDSFIRQCNFAPP* 229
Score = 197 bits (424), Expect = 7e-050
Identities = 82/102 (80%), Positives = 90/102 (88%)
Frame = -2 / +2
Query: 388 IKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGL 209
+ + YGGAKLH*R+ ESS*STYFVQ CLNWFIP+SSQGF+ PLKCTTAAFLISSMLMLGL
Sbjct: 218 LPSVYGGAKLH*RMNESS*STYFVQSCLNWFIPISSQGFIFPLKCTTAAFLISSMLMLGL 397
Query: 208 YPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ* 83
YP PRTCQD SRGFVVE* VI PGG+VP+FH+ FSF* CQ*
Sbjct: 398 YPRPRTCQDLSRGFVVE*NVINPGGNVPNFHSSRFSF*VCQ* 523
Score = 148 bits (317), Expect = 4e-035
Identities = 64/99 (64%), Positives = 78/99 (78%)
Frame = +2 / -3
Query: 83 LLAESE*EQDIMEARNAAPWLDHFLLDNKTSGEILACSWTWIQS*HQHGGD*KCCCCAFQ 262
LLA+SE*E ME N AP ++H LLD+K SG+ILAC + + S HQHGGD*K CCCAFQ
Sbjct: 523 LLADSE*EPATMEVGNIAPRINHILLDHKASGQILACPGSRV*SKHQHGGD*KRCCCAFQ 344
Query: 263 RQHEALAGHRYEPVQAPLDKVCGL**LIYSSMQFCTAIE 379
++EALAG+ YEPVQA LDK+ GL* L++SSMQFCT I+
Sbjct: 343 WEYEALAGYWYEPVQAALDKIRGL*RLVHSSMQFCTTID 227
Score = 143 bits (306), Expect = 1e-033
Identities = 65/100 (65%), Positives = 71/100 (71%)
Frame = +1 / -2
Query: 82 IIGRIRMRTGHYGS*ERCPLA*SLSTRQQNLWRNLGMFLDLDTILASAWRRLEMLLLCIS 261
I GR+RMRTG+YGS E CP *S STR Q+LW NLGM I ASAWRRLE LLLCIS
Sbjct: 524 ITGRLRMRTGYYGSWEHCPQD*SHSTRPQSLWTNLGMSWVSGIIQASAWRRLETLLLCIS 345
Query: 262 TAT*SPGWTSV*TSSGTFGQSMWTMMTHIFVNAILHRHRR 381
*S GW V*TSSG+ GQ+ W M T FVNAILH HR+
Sbjct: 344 MGI*SLGWILV*TSSGSSGQNTWIMTTRSFVNAILHHHRQ 225
Score = 138 bits (296), Expect = 3e-032
Identities = 53/84 (63%), Positives = 70/84 (83%)
Frame = -1 / +1
Query: 377 LWRCKIALTNI*VIIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKS 198
LW CKIALTN V+I+H+ CP++PELVHT++QP LH+ +EMHNSS+SNLLHADA I+ ++
Sbjct: 229 LWWCKIALTNERVVIIHVFCPELPELVHTNIQPRLHIPIEMHNSSVSNLLHADAWIIPET 408
Query: 197 KNMPRFLQRFCCRVESDQARGQRS 126
++MPRF+QR C RVE D + GQ S
Sbjct: 409 QDMPRFVQRLCGRVECD*SWGQCS 480
Score = 127 bits (273), Expect = 5e-029
Identities = 61/99 (61%), Positives = 70/99 (70%)
Frame = -3 / +3
Query: 378 SMAVQNCIDEYMSHHSPHTLSKGA*TGSYRCPARASCCR*NAQQQHF*SPPC*C*DCIQV 199
SM VQNCIDE S H+P LS+ A*TGSY+ PA+AS *NAQQQ F*SPPC*C D +
Sbjct: 228 SMVVQNCIDE*TSRHNPRILSRAA*TGSYQYPAKASYSH*NAQQQRF*SPPC*CLDYTRD 407
Query: 198 QEHAKISPEVLLSSRK*SSQGAAFLASIMSCSHSDSANN 82
HAKI PE L SSR * GA F SI++ SHS+SA+N
Sbjct: 408 PGHAKICPEALWSSRM*LILGAMFPTSIVAGSHSESASN 524
>gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B7 5' similar to 68 kDa
protein, mRNA sequence
Length = 616
Score = 226 bits (489), Expect = 8e-059
Identities = 81/122 (66%), Positives = 94/122 (77%)
Frame = +3 / +1
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMN FDL W+ + T YH WQN NE+R LWKLGTLPPGL+TFY T PL+K
Sbjct: 115 NACGWAYGMNIFDLKQWKNKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDK 294
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
SWHVLGLGYNPSI EI NAAV H+NGNMKPWL++ M ++R WT+Y+ YD YIR CN
Sbjct: 295 SWHVLGLGYNPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCN 474
Query: 363 FA 368
+
Sbjct: 475 LS 480
Score = 118 bits (252), Expect = 4e-026
Identities = 64/121 (52%), Positives = 68/121 (56%)
Frame = -2 / -3
Query: 364 KLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQ 185
+LH R+ S Y VQ I SS GFM PL TAA IS MLGLYPSPRTC
Sbjct: 476 RLHPRM*GWSYFIYLVQYGRYLVIASSSHGFMFPL**ATAALSISERSMLGLYPSPRTCH 297
Query: 184 DFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQA 5
D SRG V * V++PGGSVPSF L SF FC W V RSK FIP A PQA
Sbjct: 296 DLSRGCVSL*NVMRPGGSVPSFQRTLSSFMFCHLW*IPVISLFFHCFRSKMFIP*AQPQA 117
Query: 4 L 2
L
Sbjct: 116 L 114
>gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D065 5-PRIME, mRNA sequence
Length = 786
Score = 226 bits (489), Expect = 8e-059
Identities = 81/122 (66%), Positives = 94/122 (77%)
Frame = +3 / +1
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMN FDL W+ + T YH WQN NE+R LWKLGTLPPGL+TFY T PL+K
Sbjct: 154 NACGWAYGMNIFDLKQWKNKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDK 333
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
SWHVLGLGYNPSI EI NAAV H+NGNMKPWL++ M ++R WT+Y+ YD YIR CN
Sbjct: 334 SWHVLGLGYNPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCN 513
Query: 363 FA 368
+
Sbjct: 514 LS 519
Score = 118 bits (252), Expect = 4e-026
Identities = 64/121 (52%), Positives = 68/121 (56%)
Frame = -2 / -2
Query: 364 KLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQ 185
+LH R+ S Y VQ I SS GFM PL TAA IS MLGLYPSPRTC
Sbjct: 515 RLHPRM*GWSYFIYLVQYGRYLVIASSSHGFMFPL**ATAALSISERSMLGLYPSPRTCH 336
Query: 184 DFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQA 5
D SRG V * V++PGGSVPSF L SF FC W V RSK FIP A PQA
Sbjct: 335 DLSRGCVSL*NVMRPGGSVPSFQRTLSSFMFCHLW*IPVISLFFHCFRSKMFIP*AQPQA 156
Query: 4 L 2
L
Sbjct: 155 L 153
>gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018F09f, mRNA sequence
Length = 856
Score = 224 bits (483), Expect = 5e-058
Identities = 80/121 (66%), Positives = 93/121 (76%)
Frame = +3 / +1
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKS 185
ACGWAYGMN FDL W+ + T YH WQN NE+R LWKLGTLPPGL+TFY T PL+KS
Sbjct: 1 ACGWAYGMNIFDLKQWKNKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKS 180
Query: 186 WHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNF 365
WHVLGLGYNPSI EI NAAV H+NGNMKPWL++ M ++R WT+Y+ YD YIR CN
Sbjct: 181 WHVLGLGYNPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNL 360
Query: 366 A 368
+
Sbjct: 361 S 363
Score = 114 bits (244), Expect = 5e-025
Identities = 62/119 (52%), Positives = 66/119 (55%)
Frame = -2 / -3
Query: 364 KLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQ 185
+LH R+ S Y VQ I SS GFM PL TAA IS MLGLYPSPRTC
Sbjct: 359 RLHPRM*GWSYFIYLVQYGRYLVIASSSHGFMFPL**ATAALSISERSMLGLYPSPRTCH 180
Query: 184 DFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQ 8
D SRG V * V++PGGSVPSF L SF FC W V RSK FIP A PQ
Sbjct: 179 DLSRGCVSL*NVMRPGGSVPSFQRTLSSFMFCHLW*IPVISLFFHCFRSKMFIP*AQPQ 3
>gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j21 3', mRNA sequence
Length = 643
Score = 223 bits (481), Expect = 1e-057
Identities = 75/123 (60%), Positives = 99/123 (80%)
Frame = +3 / -3
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
+ACGWA+GMN FDL WRR+ TE YH+WQ NE+ LWKLGTLPPGL+TF++ T PL++
Sbjct: 524 DACGWAFGMNVFDLAEWRRQNITELYHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDR 345
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
SWHVLGLGYNP +S ++ AAV+H+NGN+KPWL+IG+ +FR W+KY+DYD ++R+CN
Sbjct: 344 SWHVLGLGYNPHVSSRDLERAAVIHYNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECN 165
Query: 363 FAP 371
P
Sbjct: 164 INP 156
Score = 118 bits (253), Expect = 3e-026
Identities = 64/122 (52%), Positives = 70/122 (57%)
Frame = -2 / +1
Query: 370 GAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRT 191
G LH R S*S YF Q N P+SSQGF LPL C TAA S +L GL P PRT
Sbjct: 157 GLMLHSRRKG*S*SRYFDQ*LRNLGRPISSQGFRLPL*CMTAARSRSLLLTCGL*PRPRT 336
Query: 190 CQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHP 11
C D SRG V+ V +PGG VPSFH+ S FCQ W SV F L +RS FIP A P
Sbjct: 337 CHDRSRGNVLFQNVTRPGGRVPSFHSSPSSLSFCQKW*SSVMFCRLHSARSNTFIPKAQP 516
Query: 10 QA 5
A
Sbjct: 517 HA 522
>gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. vulgare cDNA clone HX12J15
5-PRIME, mRNA sequence
Length = 653
Score = 223 bits (481), Expect = 1e-057
Identities = 75/123 (60%), Positives = 99/123 (80%)
Frame = +3 / -3
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
+ACGWA+GMN FDL WRR+ TE YH+WQ NE+ LWKLGTLPPGL+TF++ T PL++
Sbjct: 537 DACGWAFGMNVFDLAEWRRQNITELYHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDR 358
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
SWHVLGLGYNP +S ++ AAV+H+NGN+KPWL+IG+ +FR W+KY+DYD ++R+CN
Sbjct: 357 SWHVLGLGYNPHVSSRDLERAAVIHYNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECN 178
Query: 363 FAP 371
P
Sbjct: 177 INP 169
Score = 118 bits (253), Expect = 3e-026
Identities = 64/122 (52%), Positives = 70/122 (57%)
Frame = -2 / +2
Query: 370 GAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRT 191
G LH R S*S YF Q N P+SSQGF LPL C TAA S +L GL P PRT
Sbjct: 170 GLMLHSRRKG*S*SRYFDQ*LRNLGRPISSQGFRLPL*CMTAARSRSLLLTCGL*PRPRT 349
Query: 190 CQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHP 11
C D SRG V+ V +PGG VPSFH+ S FCQ W SV F L +RS FIP A P
Sbjct: 350 CHDRSRGNVLFQNVTRPGGRVPSFHSSPSSLSFCQKW*SSVMFCRLHSARSNTFIPKAQP 529
Query: 10 QA 5
A
Sbjct: 530 HA 535
>gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16a24 5', mRNA sequence
Length = 630
Score = 216 bits (467), Expect = 9e-056
Identities = 75/118 (63%), Positives = 95/118 (80%)
Frame = +3 / +2
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKS 185
ACGWA+GMN FDL W++ T YHYWQN NE+R LWKLGTLPPGLITFY+ T PL+ +
Sbjct: 128 ACGWAFGMNMFDLKEWKKRNITGIYHYWQNLNEDRKLWKLGTLPPGLITFYNLTHPLDHT 307
Query: 186 WHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 359
WHVLGLGY+P++ + EI NAAVVH+NGN KPWLD+ +++++ W+KYVD D S+IR C
Sbjct: 308 WHVLGLGYDPAVDIAEIENAAVVHYNGNYKPWLDLAISKYKAYWSKYVDVDSSHIRHC 481
Score = 118 bits (253), Expect = 3e-026
Identities = 62/116 (53%), Positives = 68/116 (58%)
Frame = -2 / -1
Query: 352 RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSR 173
R+ E S STY Q L + SSQG PL TTAAF IS+M G P P+TCQ S
Sbjct: 474 RMCELSTSTYLDQ*ALYLEMARSSQGL*FPL**TTAAFSISAMSTAGS*PRPKTCQV*SN 295
Query: 172 GFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQA 5
G V * VI PGG+VPSFHN+ SF FCQ*WY V F RS FIP A PQA
Sbjct: 294 GCVKL*NVISPGGNVPSFHNLRSSFKFCQ*WYIPVMFRFFHSFRSNMFIPKAQPQA 127
>gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16a24 3', mRNA sequence
Length = 565
Score = 216 bits (467), Expect = 9e-056
Identities = 75/118 (63%), Positives = 95/118 (80%)
Frame = +3 / -1
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKS 185
ACGWA+GMN FDL W++ T YHYWQN NE+R LWKLGTLPPGLITFY+ T PL+ +
Sbjct: 442 ACGWAFGMNMFDLKEWKKRNITGIYHYWQNLNEDRKLWKLGTLPPGLITFYNLTHPLDHT 263
Query: 186 WHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 359
WHVLGLGY+P++ + EI NAAVVH+NGN KPWLD+ +++++ W+KYVD D S+IR C
Sbjct: 262 WHVLGLGYDPAVDIAEIENAAVVHYNGNYKPWLDLAISKYKAYWSKYVDVDSSHIRHC 89
Score = 118 bits (253), Expect = 3e-026
Identities = 62/116 (53%), Positives = 68/116 (58%)
Frame = -2 / +3
Query: 352 RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSR 173
R+ E S STY Q L + SSQG PL TTAAF IS+M G P P+TCQ S
Sbjct: 96 RMCELSTSTYLDQ*ALYLEMARSSQGL*FPL**TTAAFSISAMSTAGS*PRPKTCQV*SN 275
Query: 172 GFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQA 5
G V * VI PGG+VPSFHN+ SF FCQ*WY V F RS FIP A PQA
Sbjct: 276 GCVKL*NVISPGGNVPSFHNLRSSFKFCQ*WYIPVMFRFFHSFRSNMFIPKAQPQA 443
>gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. vulgare cDNA clone HM10N01
3-PRIME, mRNA sequence
Length = 535
Score = 211 bits (456), Expect = 3e-054
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +3 / -3
Query: 123 LGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQ 302
LGTLPPGLITFYSTTKPL+KSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQ
Sbjct: 533 LGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQ 354
Query: 303 FRHLWTKYVDYDDSYIRQCNFAPP* 377
FR LWTKYVDYDDS+IRQCNFAPP*
Sbjct: 353 FRQLWTKYVDYDDSFIRQCNFAPP* 279
Score = 177 bits (382), Expect = 5e-044
Identities = 73/89 (82%), Positives = 80/89 (89%)
Frame = -2 / +1
Query: 388 IKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGL 209
+ + YGGAKLH*R+ ESS*STYFVQ CLNWFIP+SSQGF+ PLKCTTAAFLISSMLMLGL
Sbjct: 268 LPSVYGGAKLH*RMNESS*STYFVQSCLNWFIPISSQGFIFPLKCTTAAFLISSMLMLGL 447
Query: 208 YPSPRTCQDFSRGFVVE*KVIKPGGSVPS 122
YP PRTCQD SRGFVVE* VI PGG+VP+
Sbjct: 448 YPRPRTCQDLSRGFVVE*NVINPGGNVPN 534
Score = 134 bits (287), Expect = 6e-031
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = -1 / +3
Query: 377 LWRCKIALTNI*VIIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKS 198
LW CKIALTN V+I+ + CP++PELVHT++QP LH+ +EMHNSS+SNLLHADA I+ ++
Sbjct: 279 LWWCKIALTNERVVIIDVFCPELPELVHTNIQPRLHIPIEMHNSSVSNLLHADAWIIPET 458
Query: 197 KNMPRFLQRFCCRVESDQARGQRS 126
++MPRF+QR C RVE D + GQ S
Sbjct: 459 QDMPRFVQRLCGRVECD*SWGQCS 530
Score = 129 bits (276), Expect = 2e-029
Identities = 54/84 (64%), Positives = 67/84 (79%)
Frame = +2 / -2
Query: 128 NAAPWLDHFLLDNKTSGEILACSWTWIQS*HQHGGD*KCCCCAFQRQHEALAGHRYEPVQ 307
N AP ++H LLD+K SG+ILAC + + S HQHGGD*K CCCAFQ ++EALAG+ YEPVQ
Sbjct: 528 NIAPRINHILLDHKASGQILACPGSRV*SKHQHGGD*KRCCCAFQWEYEALAGYWYEPVQ 349
Query: 308 APLDKVCGL**LIYSSMQFCTAIE 379
A LDK+ L* L++SSMQFCT I+
Sbjct: 348 AALDKIRRL*RLVHSSMQFCTTID 277
Score = 110 bits (235), Expect = 9e-024
Identities = 53/85 (62%), Positives = 57/85 (67%)
Frame = +1 / -1
Query: 127 ERCPLA*SLSTRQQNLWRNLGMFLDLDTILASAWRRLEMLLLCISTAT*SPGWTSV*TSS 306
E CP *S STR Q+LW NLGM I ASAWRRLE LLLCIS *S GW V*TSS
Sbjct: 529 EHCPQD*SHSTRPQSLWTNLGMSWVSGIIQASAWRRLETLLLCISMGI*SLGWILV*TSS 350
Query: 307 GTFGQSMWTMMTHIFVNAILHRHRR 381
G+ GQ+ M T FVNAILH HR+
Sbjct: 349 GSSGQNTSIMTTRSFVNAILHHHRQ 275
Score = 106 bits (227), Expect = 1e-022
Identities = 52/84 (61%), Positives = 57/84 (67%)
Frame = -3 / +2
Query: 378 SMAVQNCIDEYMSHHSPHTLSKGA*TGSYRCPARASCCR*NAQQQHF*SPPC*C*DCIQV 199
SM VQNCIDE S H+ LS+ A*TGSY+ PA+AS *NAQQQ F*SPPC*C D +
Sbjct: 278 SMVVQNCIDE*TSRHNRRILSRAA*TGSYQYPAKASYSH*NAQQQRF*SPPC*CLDYTRD 457
Query: 198 QEHAKISPEVLLSSRK*SSQGAAF 127
HAKI PE L SSR * GA F
Sbjct: 458 PGHAKICPEALWSSRM*LILGAMF 529
>gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j21 5', mRNA sequence
Length = 612
Score = 147 bits (315), Expect(2) = 2e-052
Identities = 51/81 (62%), Positives = 64/81 (79%)
Frame = +3 / +2
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
+ACGWA+GMN FDL WRR+ TE YH+WQ NE+ LWKLGTLPPGL+TF++ T PL++
Sbjct: 200 DACGWAFGMNVFDLAEWRRQNITELYHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDR 379
Query: 183 SWHVLGLGYNPSISMEEIRNA 245
SWHVLGLGYNP +S ++ A
Sbjct: 380 SWHVLGLGYNPHVSSRDLERA 442
Score = 84.0 bits (177), Expect(2) = 4e-022
Identities = 40/76 (52%), Positives = 45/76 (59%)
Frame = -2 / -1
Query: 232 SSMLMLGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLL 53
S +L GL P PRTC D SRG V+ V +PGG VPSFH+ S FCQ W SV F L
Sbjct: 429 SLLLTCGL*PRPRTCHDRSRGNVLFQNVTRPGGRVPSFHSSPSSLSFCQKW*SSVMFCRL 250
Query: 52 QESRSKKFIPYAHPQA 5
+RS FIP A P A
Sbjct: 249 HSARSNTFIPKAQPHA 202
Score = 79.0 bits (166), Expect(2) = 2e-052
Identities = 24/42 (57%), Positives = 35/42 (83%)
Frame = +3 / +3
Query: 246 AVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 371
AV+H+NGN+KPWL+IG+ +FR W+KY+DYD ++R+CN P
Sbjct: 444 AVIHYNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECNINP 569
Score = 40.5 bits (82), Expect(2) = 4e-022
Identities = 24/45 (53%), Positives = 25/45 (55%)
Frame = -2 / -3
Query: 370 GAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFL 236
G LH R S*S YF Q N P+SSQGF LPL C TA L
Sbjct: 568 GLMLHSRRKG*S*SRYFDQ*LRNLGRPISSQGFRLPL*CMTAGTL 434
>gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 5', mRNA sequence
Length = 598
Score = 203 bits (437), Expect = 1e-051
Identities = 73/106 (68%), Positives = 83/106 (78%)
Frame = +3 / +2
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMN FDL W+ + T YH WQN NE+R LWKLGTLPPGL+TFY T PL+K
Sbjct: 281 NACGWAYGMNIFDLKQWKNKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDK 460
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWT 320
SWHVLGLGYNPSI EI NAAV H+NGNMKPWL++ M ++R WT
Sbjct: 461 SWHVLGLGYNPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWT 598
Score = 114 bits (244), Expect = 5e-025
Identities = 57/98 (58%), Positives = 59/98 (60%)
Frame = -2 / -2
Query: 295 IPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFH 116
I SS GFM PL TAA IS MLGLYPSPRTC D SRG V * V++PGGSVPSF
Sbjct: 573 IASSSHGFMFPL**ATAALSISERSMLGLYPSPRTCHDLSRGCVSL*NVMRPGGSVPSFQ 394
Query: 115 NVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQAL 2
L SF FC W V RSK FIP A PQAL
Sbjct: 393 RTLSSFMFCHLW*IPVISLFFHCFRSKMFIP*AQPQAL 280
>gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd23f10, mRNA
sequence
Length = 643
Score = 190 bits (410), Expect = 6e-048
Identities = 68/106 (64%), Positives = 81/106 (76%)
Frame = +3 / -2
Query: 51 WRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISME 230
W+ + T YH WQN NE+R LWKLGTLPPGL+TFY T PL+KSWHVLGLGYNPSI
Sbjct: 636 WKNKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRS 457
Query: 231 EIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFA 368
EI NAAV H+NGNMKPWL++ M ++R WT+Y+ YD YIR CN +
Sbjct: 456 EIDNAAVAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNLS 319
Score = 102 bits (217), Expect = 3e-021
Identities = 52/95 (54%), Positives = 56/95 (58%)
Frame = -2 / +2
Query: 364 KLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQ 185
+LH R+ S Y VQ I SS GFM PL TAA IS MLGLYPSPRTC
Sbjct: 323 RLHPRM*GWSYFIYLVQYGRYLVIASSSHGFMFPL**ATAALSISERSMLGLYPSPRTCH 502
Query: 184 DFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*W 80
D SRG V * V++PGGSVPSF L SF FC W
Sbjct: 503 DLSRGCVSL*NVMRPGGSVPSFQRTLSSFMFCHLW 607
>gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006H13f, mRNA sequence
Length = 1018
Score = 179 bits (385), Expect(2) = 1e-047
Identities = 61/101 (60%), Positives = 80/101 (79%)
Frame = +3 / +1
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
+ACGWA+GMN FDL WRR+ TE YH+WQ NE+ LWKLGTLPPGL+TF++ T PL++
Sbjct: 367 DACGWAFGMNVFDLAEWRRQNITELYHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDR 546
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQF 305
SWHVLGLGYNP +S ++ AAV+H+ G++KPWL+ G+ F
Sbjct: 547 SWHVLGLGYNPHVSSRDLERAAVIHYXGHLKPWLEXGLPSF 669
Score = 102 bits (217), Expect = 3e-021
Identities = 50/96 (52%), Positives = 56/96 (58%)
Frame = -2 / -3
Query: 292 PMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHN 113
P+SSQGF P C TAA S +L GL P PRTC D S G V+ V +PGG VPSFH+
Sbjct: 656 PISSQGFRCPX*CMTAARSRSLLLTCGL*PRPRTCHDRSXGNVLFQNVTRPGGRVPSFHS 477
Query: 112 VLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQA 5
S FCQ W SV F L +RS FIP A P A
Sbjct: 476 SPSSLSFCQKW*SSVMFCRLHSARSNTFIPKAQPHA 369
Score = 30.9 bits (61), Expect(2) = 1e-047
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3 / +3
Query: 300 QFRHLWTKYVDYDDSY 347
QFR W+KY+DYD +
Sbjct: 663 QFRSYWSKYLDYDQXF 710
>gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10L09
5-PRIME, mRNA sequence
Length = 684
Score = 187 bits (402), Expect = 8e-047
Identities = 66/93 (70%), Positives = 76/93 (81%)
Frame = +3 / +3
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMN FDL+ W+++ T YH WQN NENR LWKLGTLPPGL+TFY T PL+K
Sbjct: 405 NACGWAYGMNMFDLEEWKKKDITGIYHKWQNMNENRLLWKLGTLPPGLMTFYKLTHPLDK 584
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPW 281
SWHVLGLGYNP++ EI AAV+H+NGNMKPW
Sbjct: 585 SWHVLGLGYNPTVEHAEIDTAAVIHYNGNMKPW 683
Score = 111 bits (236), Expect = 6e-024
Identities = 52/92 (56%), Positives = 58/92 (63%)
Frame = -2 / -3
Query: 277 GFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF 98
GFM PL TAA IS+ +GLYP+P TC D SRG V *KV++PGGSVPSFH+ LFSF
Sbjct: 679 GFMFPL*WMTAAVSISACSTVGLYPNPSTCHDLSRGCVSL*KVMRPGGSVPSFHSSLFSF 500
Query: 97 *FCQ*WYCSVHFSLLQESRSKKFIPYAHPQAL 2
FC W V SRS FIP A P AL
Sbjct: 499 MFCHLW*IPVMSFFFHSSRSNIFIP*AQPHAL 404
>gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 3', mRNA sequence
Length = 634
Score = 186 bits (401), Expect = 1e-046
Identities = 68/105 (64%), Positives = 80/105 (76%)
Frame = +3 / -1
Query: 54 RREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEE 233
R + T YH WQN NE+R LWKLGTLPPGL+TFY T PL+KSWHVLGLGYNPSI E
Sbjct: 631 RTKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSE 452
Query: 234 IRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFA 368
I NAAV H+NGNMKPWL++ M ++R WT+Y+ YD YIR CN +
Sbjct: 451 IDNAAVAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNLS 317
Score = 102 bits (217), Expect = 3e-021
Identities = 52/95 (54%), Positives = 56/95 (58%)
Frame = -2 / +3
Query: 364 KLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQ 185
+LH R+ S Y VQ I SS GFM PL TAA IS MLGLYPSPRTC
Sbjct: 321 RLHPRM*GWSYFIYLVQYGRYLVIASSSHGFMFPL**ATAALSISERSMLGLYPSPRTCH 500
Query: 184 DFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*W 80
D SRG V * V++PGGSVPSF L SF FC W
Sbjct: 501 DLSRGCVSL*NVMRPGGSVPSFQRTLSSFMFCHLW 605
>gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016D06f, mRNA sequence
Length = 490
Score = 183 bits (395), Expect = 7e-046
Identities = 61/119 (51%), Positives = 88/119 (73%)
Frame = +3 / +3
Query: 9 CGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSW 188
CGWA+GMN FDL +WR+ T YHYWQ QN ++ LW+ GTLP GL+TFY +PL++ W
Sbjct: 39 CGWAFGMNIFDLIAWRKANATSLYHYWQEQNADQLLWRTGTLPAGLLTFYGLMEPLDRRW 218
Query: 189 HVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNF 365
H+LGLGY+ I I +AAVVH+NGNMKPWL + +++++ +W ++V++ +IR+C F
Sbjct: 219 HLLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIHRYKSIWERHVNFSHPHIRECMF 395
>gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_G13 5', mRNA sequence
Length = 523
Score = 179 bits (385), Expect = 2e-044
Identities = 64/94 (68%), Positives = 75/94 (79%)
Frame = +3 / +2
Query: 87 WQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNG 266
WQN NE+R LWKLGTLPPGL+TFY T PL+KSWHVLGLGYNPSI EI NAAV H+NG
Sbjct: 2 WQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAHYNG 181
Query: 267 NMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFA 368
NMKPWL++ M ++R WT+Y+ YD YIR CN +
Sbjct: 182 NMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNLS 283
>gb|AV931472.1|AV931472 AV931472 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19o15 3', mRNA sequence
Length = 635
Score = 178 bits (383), Expect = 3e-044
Identities = 59/98 (60%), Positives = 80/98 (81%)
Frame = +3 / -2
Query: 78 YHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVH 257
YH+WQ NE+ LWKLGTLPPGL+TF++ T PL++SWHVLGLGYNP +S ++ AAV+H
Sbjct: 634 YHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIH 455
Query: 258 FNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 371
+NGN+KPWL+IG+ +FR W+KY+DYD ++R+CN P
Sbjct: 454 YNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECNINP 341
>gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025O15f, mRNA sequence
Length = 674
Score = 172 bits (371), Expect = 2e-042
Identities = 59/116 (50%), Positives = 83/116 (71%)
Frame = +3 / +1
Query: 9 CGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSW 188
CGWA+GMN FDL +WR+ T YHYWQ QN ++ LW+ GTLP GL+TFY +PL++ W
Sbjct: 217 CGWAFGMNIFDLIAWRKANATSLYHYWQEQNADQLLWRTGTLPAGLLTFYGLMEPLDRRW 396
Query: 189 HVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQ 356
H+LGLGY+ I I +AAVVH+NGNMKPWL + ++ ++ +W V++ +IR+
Sbjct: 397 HLLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIHPYKSIWGADVNFSHPHIRE 564
>gb|AV930935.1|AV930935 AV930935 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25o11 3', mRNA sequence
Length = 495
Score = 163 bits (351), Expect = 9e-040
Identities = 55/91 (60%), Positives = 75/91 (82%)
Frame = +3 / -1
Query: 99 NENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKP 278
NE+ LWKLGTLPPGL+TF++ T PL++SWHVLGLGYNP +S ++ AAV+H+NGN+KP
Sbjct: 495 NEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIHYNGNLKP 316
Query: 279 WLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 371
WL+IG+ +FR W+KY+DYD ++R+CN P
Sbjct: 315 WLEIGLPKFRSYWSKYLDYDQPFLRECNINP 223
>gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g13 3', mRNA sequence
Length = 703
Score = 102 bits (218), Expect(2) = 2e-035
Identities = 36/63 (57%), Positives = 43/63 (68%)
Frame = +3 / -1
Query: 21 YGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLG 200
+GMN DL WR + T YHYWQ +N + TLWKLG+LPPGL+ FY + L WHVLG
Sbjct: 703 FGMNVLDLVEWRNKNVTGIYHYWQERNADHTLWKLGSLPPGLLAFYGLVEALNPKWHVLG 524
Query: 201 LGY 209
LGY
Sbjct: 523 LGY 515
Score = 66.1 bits (138), Expect(2) = 2e-035
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +3 / -1
Query: 216 SISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 359
++ + I+ AV+H+NGN+KPWL IGM +++ W YVDY +++C
Sbjct: 511 TVDPDTIKEGAVLHYNGNLKPWLKIGMEKYKGFWDNYVDYSHPLLQRC 368
>gb|AV833846.1|AV833846 AV833846 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags20p21, mRNA sequence
Length = 494
Score = 97.7 bits (207), Expect(3) = 4e-035
Identities = 36/73 (49%), Positives = 45/73 (61%)
Frame = +3 / +3
Query: 90 QNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGN 269
+N TLWK GTLPP LI F ++ SWH+LGLGY S +E ++ AAVVH+NG
Sbjct: 183 ENLKAGLTLWKFGTLPPALIAFRGHVHGIDPSWHMLGLGYQESTDIESVKKAAVVHYNGQ 362
Query: 270 MKPWLDIGMNQFR 308
KPWLDI +
Sbjct: 363 CKPWLDIAFKNLQ 401
Score = 56.5 bits (117), Expect(3) = 4e-035
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3 / +3
Query: 9 CGWAYGMNFFDLDSWRREKCTEQYHYWQNQN 101
C WAYGMN FDL++WR+ + YH+W +N
Sbjct: 96 CAWAYGMNVFDLEAWRKTNIRDTYHFWLKEN 188
Score = 31.8 bits (63), Expect(3) = 4e-035
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3 / +1
Query: 315 WTKYVDYDDSYIRQCNFAPP 374
WTK+V+Y + +IR C+ P
Sbjct: 409 WTKHVNYSNDFIRNCHILEP 468
>gb|BE060385.2|BE060385 HVSMEg0012C17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0012C17f, mRNA sequence
Length = 785
Score = 144 bits (308), Expect(2) = 8e-035
Identities = 50/74 (67%), Positives = 61/74 (82%)
Frame = +3 / +1
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
+ACGWA+GMN FDL WRR+ TE YH+WQ NE+ LWKLGTLPPGL+TF++ T PL++
Sbjct: 367 DACGWAFGMNVFDLAEWRRQNITELYHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDR 546
Query: 183 SWHVLGLGYNPSIS 224
SWHVLGLGYNP +S
Sbjct: 547 SWHVLGLGYNPHVS 588
Score = 23.1 bits (44), Expect(2) = 8e-035
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +3 / +2
Query: 315 WTKYVDYDDSY 347
W+KY+D+D ++
Sbjct: 683 WSKYLDFDQAF 715
>gb|BU986456.1|BU986456 HF11O19r HF Hordeum vulgare subsp. vulgare cDNA clone HF11O19
5-PRIME, mRNA sequence
Length = 478
Score = 146 bits (314), Expect = 1e-034
Identities = 54/84 (64%), Positives = 65/84 (77%)
Frame = +3 / +3
Query: 114 LWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIG 293
L LP GL+TFY TKPL+KSWHV+GLGYNPSIS E IR AAV+HFNGNMKPWLD+
Sbjct: 27 LGSTSVLPAGLMTFYGNTKPLDKSWHVMGLGYNPSISPEVIRGAAVIHFNGNMKPWLDVA 206
Query: 294 MNQFRHLWTKYVDYDDSYIRQCNF 365
NQ++ LWTK+VD + ++ CNF
Sbjct: 207 FNQYKALWTKHVDTEMEFLTLCNF 278
>gb|BJ549178.1|BJ549178 BJ549178 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a14 5', mRNA sequence
Length = 606
Score = 135 bits (289), Expect = 3e-031
Identities = 49/53 (92%), Positives = 50/53 (94%)
Frame = +3 / +1
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYS 161
NACGWAYGMNFFDL+SWRREK TEQYHYWQ QNENR LWKLGTLPPGLITFYS
Sbjct: 448 NACGWAYGMNFFDLNSWRREKSTEQYHYWQTQNENRLLWKLGTLPPGLITFYS 606
>gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078D03F1, mRNA sequence
Length = 447
Score = 134 bits (287), Expect = 6e-031
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +3 / +1
Query: 144 LITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTK 323
L+TFY T PL+KSWHVLGLGYNPSI EI NAAV H+NGNMKPWL++ M ++R WT+
Sbjct: 7 LMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAHYNGNMKPWLELAMTKYRPYWTR 186
Query: 324 YVDYDDSYIRQCNFA 368
Y+ YD YIR CN +
Sbjct: 187 YIKYDHPYIRGCNLS 231
>gb|BQ460226.1|BQ460226 HA06N23r HA Hordeum vulgare subsp. vulgare cDNA clone HA06N23
5-PRIME, mRNA sequence
Length = 567
Score = 124 bits (265), Expect = 6e-028
Identities = 44/88 (50%), Positives = 57/88 (64%)
Frame = +3 / +2
Query: 111 TLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDI 290
TLWK GTLPP LI F ++ SWH+LGLGY S +E ++ AAVVH+NG KPWLDI
Sbjct: 20 TLWKFGTLPPALIAFRGHVHGIDPSWHMLGLGYQESTDIESVKKAAVVHYNGQCKPWLDI 199
Query: 291 GMNQFRHLWTKYVDYDDSYIRQCNFAPP 374
+ WTK+V+Y + +IR C+ P
Sbjct: 200 AFKNLQPFWTKHVNYSNDFIRNCHILEP 283
>gb|BM443862.2|BM443862 EBem09_SQ001_M07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ001_M07 5', mRNA sequence
Length = 512
Score = 118 bits (253), Expect = 3e-026
Identities = 41/69 (59%), Positives = 49/69 (71%)
Frame = +3 / +3
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
+ACGWA+GMN DL WR + T YHYWQ +N + TLWKLG+LPPGL+ FY + L
Sbjct: 282 DACGWAFGMNVLDLVEWRNKNVTGIYHYWQERNADHTLWKLGSLPPGLLAFYGLVEALNP 461
Query: 183 SWHVLGLGY 209
WHVLGLGY
Sbjct: 462 KWHVLGLGY 488
>gb|AL510176.1|AL510176 AL510176 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04C08u 3',
mRNA sequence
Length = 548
Score = 70.7 bits (148), Expect(2) = 2e-022
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = +3 / -3
Query: 249 VVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFA 368
V H+NGNMKPWL++ M ++R WT+Y+ YD YIR CN +
Sbjct: 432 VAHYNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNLS 313
Score = 54.7 bits (113), Expect(2) = 2e-022
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3 / -2
Query: 171 PLEKSWHVLGLGYNPSISMEEIRNAA 248
PL+KSWHVLGLGYNPSI EI NAA
Sbjct: 511 PLDKSWHVLGLGYNPSIDRSEIDNAA 434
>gb|CA024809.1|CA024809 HZ50F23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F23
5-PRIME, mRNA sequence
Length = 154
Score = 105 bits (224), Expect = 3e-022
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = +3 / +1
Query: 141 GLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDI 290
GL+TFY TKPL+KSWHV+GLGYN SIS E IR AAV+HFNGNMKPWLD+
Sbjct: 4 GLMTFYGNTKPLDKSWHVMGLGYNASISPEVIRGAAVIHFNGNMKPWLDV 153
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 341,477,046
Number of Sequences: 312970
Number of extensions: 5124702
Number of successful extensions: 32946
Number of sequences better than 1.0e-020: 44
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8356091673
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)