TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA li... 155 2e-038
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 155 2e-038
gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA li... 155 3e-038
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 155 3e-037
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 155 3e-037
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 119 8e-033
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 139 1e-032
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 134 1e-032
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 134 1e-032
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 134 1e-032
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 134 1e-032
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 134 1e-032
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 134 1e-032
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 134 1e-032
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 134 1e-032
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 134 1e-032
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 134 1e-032
gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. v... 134 1e-032
gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. v... 134 1e-032
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 132 5e-032
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 132 5e-032
gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachi... 136 1e-031
gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachi... 135 3e-031
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 134 5e-031
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 134 5e-031
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 134 5e-031
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 134 5e-031
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 134 5e-031
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 134 5e-031
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 134 5e-031
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 134 5e-031
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 134 5e-031
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 134 5e-031
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 134 5e-031
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 134 5e-031
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 134 5e-031
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 131 3e-030
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 130 9e-030
gb|BF259601.3|BF259601 HVSMEf0019M06f Hordeum vulgare seedl... 128 3e-029
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 122 3e-027
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 121 5e-027
gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. v... 119 2e-026
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 118 2e-026
gb|AV910504.1|AV910504 AV910504 K. Sato unpublished cDNA li... 117 5e-026
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 116 9e-026
gb|BJ452844.1|BJ452844 BJ452844 K. Sato unpublished cDNA li... 110 4e-025
gb|AV927371.1|AV927371 AV927371 K. Sato unpublished cDNA li... 110 5e-025
gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots... 113 8e-025
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 113 8e-025
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 113 8e-025
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 113 8e-025
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 113 8e-025
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 113 8e-025
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 113 8e-025
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 113 8e-025
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 113 8e-025
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 113 8e-025
gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. v... 113 8e-025
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 113 8e-025
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 113 8e-025
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 113 8e-025
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 113 8e-025
gb|BI956576.1|BI956576 HVSMEn0004D17f Hordeum vulgare rachi... 113 1e-024
gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiol... 112 2e-024
gb|AV918285.1|AV918285 AV918285 K. Sato unpublished cDNA li... 107 3e-024
gb|BQ464910.1|BQ464910 HU02B19r HU Hordeum vulgare subsp. v... 108 4e-023
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 101 4e-023
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 107 5e-023
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 107 7e-023
gb|BE060456.3|BE060456 HVSMEg0012F17f Hordeum vulgare pre-a... 106 1e-022
gb|BM815945.1|BM815945 HC105B07_T3.ab1 HC Hordeum vulgare s... 101 3e-022
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 105 3e-022
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 105 3e-022
gb|BI956663.1|BI956663 HVSMEn0004K08f Hordeum vulgare rachi... 103 9e-022
gb|BI959331.1|BI959331 HVSMEn0019E12f Hordeum vulgare rachi... 101 4e-021
>gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m06 5', mRNA sequence
Length = 522
Score = 155 bits (332), Expect(2) = 2e-038
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASI SLLWVR++PFLAK DGPLLEE
Sbjct: 15 FFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAKTDGPLLEE 194
Query: 187 CGLDCN*GM 213
CGLDC * M
Sbjct: 195 CGLDCT*EM 221
Score = 25.4 bits (49), Expect(2) = 2e-038
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1 / +1
Query: 349 WGENGGCGNP 378
+G+ GGCGNP
Sbjct: 415 FGQTGGCGNP 444
>gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019A22f, mRNA sequence
Length = 619
Score = 155 bits (332), Expect(2) = 2e-038
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASI SLLWVR++PFLAK DGPLLEE
Sbjct: 112 FFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAKTDGPLLEE 291
Query: 187 CGLDCN*GM 213
CGLDC * M
Sbjct: 292 CGLDCT*EM 318
Score = 25.4 bits (49), Expect(2) = 2e-038
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1 / +2
Query: 349 WGENGGCGNP 378
+G+ GGCGNP
Sbjct: 512 FGQTGGCGNP 541
>gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16h09 5', mRNA sequence
Length = 633
Score = 155 bits (332), Expect(2) = 3e-038
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASI SLLWVR++PFLAK DGPLLEE
Sbjct: 6 FFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAKTDGPLLEE 185
Query: 187 CGLDCN*GM 213
CGLDC * M
Sbjct: 186 CGLDCT*EM 212
Score = 25.4 bits (49), Expect(2) = 3e-038
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1 / +2
Query: 349 WGENGGCGNP 378
+G+ GGCGNP
Sbjct: 410 FGQTGGCGNP 439
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 155 bits (332), Expect(2) = 3e-037
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASI SLLWVR++PFLAK DGPLLEE
Sbjct: 253 FFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAKTDGPLLEE 432
Query: 187 CGLDCN*GM 213
CGLDC * M
Sbjct: 433 CGLDCT*EM 459
Score = 22.6 bits (43), Expect(2) = 3e-037
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +1 / +2
Query: 349 WGENGGCGNP 378
+G+ G CGNP
Sbjct: 653 FGQTGSCGNP 682
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 155 bits (332), Expect = 3e-037
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASI SLLWVR++PFLAK DGPLLEE
Sbjct: 221 FFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAKTDGPLLEE 400
Query: 187 CGLDCN*GM 213
CGLDC * M
Sbjct: 401 CGLDCT*EM 427
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 119 bits (255), Expect(2) = 8e-033
Identities = 47/52 (90%), Positives = 51/52 (98%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAK 162
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASI SLLWVR++PFLA+
Sbjct: 275 FFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAR 430
Score = 40.5 bits (82), Expect(2) = 8e-033
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1 / +1
Query: 145 DPFLAKDDGPLLEECGLDC 201
+PF + DGPLLEECGLDC
Sbjct: 412 EPFPRQTDGPLLEECGLDC 468
>gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdl12 3', mRNA sequence
Length = 661
Score = 139 bits (299), Expect = 1e-032
Identities = 51/65 (78%), Positives = 61/65 (93%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FF+FWVIVHLYPFLKGL+GRQNRTPTIV++WS+LLASIFSL+WVRIDPF+AK GP+L+
Sbjct: 364 FFSFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFIAKPKGPILKP 185
Query: 187 CGLDC 201
CG+ C
Sbjct: 184 CGVQC 170
>gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E20f, mRNA sequence
Length = 681
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 530 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 351
Query: 187 CGLDC 201
CG++C
Sbjct: 350 CGINC 336
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / -1
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 357 PNLWHQLLGKWEI 319
>gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 3', mRNA sequence
Length = 649
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 452 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 273
Query: 187 CGLDC 201
CG++C
Sbjct: 272 CGINC 258
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / -2
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 279 PNLWHQLLGKWEI 241
>gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
5-PRIME, mRNA sequence
Length = 643
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 302 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 481
Query: 187 CGLDC 201
CG++C
Sbjct: 482 CGINC 496
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 475 PNLWHQLLGKWEI 513
>gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 3', mRNA sequence
Length = 631
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 509 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 330
Query: 187 CGLDC 201
CG++C
Sbjct: 329 CGINC 315
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / -2
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 336 PNLWHQLLGKWEI 298
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 324 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 503
Query: 187 CGLDC 201
CG++C
Sbjct: 504 CGINC 518
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 497 PNLWHQLLGKWEI 535
>gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10e13 3', mRNA sequence
Length = 616
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 495 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 316
Query: 187 CGLDC 201
CG++C
Sbjct: 315 CGINC 301
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / -1
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 322 PNLWHQLLGKWEI 284
>gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 5', mRNA sequence
Length = 604
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 303 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 482
Query: 187 CGLDC 201
CG++C
Sbjct: 483 CGINC 497
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 476 PNLWHQLLGKWEI 514
>gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 3', mRNA sequence
Length = 604
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 375 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 196
Query: 187 CGLDC 201
CG++C
Sbjct: 195 CGINC 181
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / -1
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 202 PNLWHQLLGKWEI 164
>gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 3', mRNA sequence
Length = 598
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 492 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 313
Query: 187 CGLDC 201
CG++C
Sbjct: 312 CGINC 298
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / -1
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 319 PNLWHQLLGKWEI 281
>gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_L20 5', mRNA sequence
Length = 538
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 92 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 271
Query: 187 CGLDC 201
CG++C
Sbjct: 272 CGINC 286
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 265 PNLWHQLLGKWEI 303
>gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
3-PRIME, mRNA sequence
Length = 533
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 529 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 350
Query: 187 CGLDC 201
CG++C
Sbjct: 349 CGINC 335
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / -1
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 356 PNLWHQLLGKWEI 318
>gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. vulgare cDNA clone HV12L21
3-PRIME, mRNA sequence
Length = 515
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 493 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 314
Query: 187 CGLDC 201
CG++C
Sbjct: 313 CGINC 299
Score = 24.9 bits (48), Expect(2) = 1e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / -1
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 320 PNLWHQLLGKWEI 282
>gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. vulgare cDNA clone HI05L24
3-PRIME, mRNA sequence
Length = 539
Score = 132 bits (283), Expect(2) = 5e-032
Identities = 49/65 (75%), Positives = 58/65 (89%)
Frame = +1 / -3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKG +GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 366 FFAFWVIVHLYPFLKGFMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 187
Query: 187 CGLDC 201
CG++C
Sbjct: 186 CGINC 172
Score = 24.9 bits (48), Expect(2) = 5e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / -2
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 193 PNLWHQLLGKWEI 155
>gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006L01f, mRNA sequence
Length = 500
Score = 132 bits (283), Expect(2) = 5e-032
Identities = 49/65 (75%), Positives = 58/65 (89%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVI HLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 30 FFAFWVIAHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 209
Query: 187 CGLDC 201
CG++C
Sbjct: 210 CGINC 224
Score = 24.9 bits (48), Expect(2) = 5e-032
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 330 PNIWDTLGGKWRL 368
PN+W L GKW +
Sbjct: 203 PNLWHQLLGKWEI 241
>gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015J16f, mRNA sequence
Length = 631
Score = 136 bits (292), Expect = 1e-031
Identities = 50/65 (76%), Positives = 60/65 (92%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FF+ WVIVHLYPFLKGL+GRQNRTPTIV++WS+LLASIFSL+WVRIDPF+AK GP+L+
Sbjct: 409 FFSXWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFIAKPKGPILKP 230
Query: 187 CGLDC 201
CG+ C
Sbjct: 229 CGVQC 215
>gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O11f, mRNA sequence
Length = 658
Score = 135 bits (289), Expect = 3e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKG +GRQNRTPTIVI+WS+LLAS+FSLLWVRIDPF K GP +++
Sbjct: 363 FFAFWVIVHLYPFLKGFMGRQNRTPTIVIIWSVLLASMFSLLWVRIDPFTVKAKGPDVKQ 184
Query: 187 CGLDC 201
CG++C
Sbjct: 183 CGINC 169
>gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 5', mRNA sequence
Length = 631
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 304 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 483
Query: 187 CGLDC 201
CG++C
Sbjct: 484 CGINC 498
>gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 3', mRNA sequence
Length = 680
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 509 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 330
Query: 187 CGLDC 201
CG++C
Sbjct: 329 CGINC 315
>gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 3', mRNA sequence
Length = 505
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVI+HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVRIDPF + GP ++
Sbjct: 292 FFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQM 113
Query: 187 CGLDC 201
CG++C
Sbjct: 112 CGINC 98
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVI+HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVRIDPF + GP ++
Sbjct: 348 FFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQM 169
Query: 187 CGLDC 201
CG++C
Sbjct: 168 CGINC 154
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVI+HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVRIDPF + GP ++
Sbjct: 355 FFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQM 176
Query: 187 CGLDC 201
CG++C
Sbjct: 175 CGINC 161
>gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 3', mRNA sequence
Length = 650
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 509 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 330
Query: 187 CGLDC 201
CG++C
Sbjct: 329 CGINC 315
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 445 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 624
Query: 187 CGLDC 201
CG++C
Sbjct: 625 CGINC 639
>gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31h15 3', mRNA sequence
Length = 669
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 468 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 289
Query: 187 CGLDC 201
CG++C
Sbjct: 288 CGINC 274
>gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_K11 5', mRNA sequence
Length = 606
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++
Sbjct: 64 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQT 243
Query: 187 CGLDC 201
CG++C
Sbjct: 244 CGINC 258
>gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H16
5-PRIME, mRNA sequence
Length = 471
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVI+HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVRIDPF + GP ++
Sbjct: 95 FFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQM 274
Query: 187 CGLDC 201
CG++C
Sbjct: 275 CGINC 289
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVI+HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVRIDPF + GP ++
Sbjct: 319 FFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQM 498
Query: 187 CGLDC 201
CG++C
Sbjct: 499 CGINC 513
>gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
3-PRIME, mRNA sequence
Length = 651
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVI+HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVRIDPF + GP ++
Sbjct: 348 FFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQM 169
Query: 187 CGLDC 201
CG++C
Sbjct: 168 CGINC 154
>gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX10P19
3-PRIME, mRNA sequence
Length = 616
Score = 134 bits (287), Expect = 5e-031
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVI+HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVRIDPF + GP ++
Sbjct: 291 FFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQM 112
Query: 187 CGLDC 201
CG++C
Sbjct: 111 CGINC 97
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 131 bits (281), Expect = 3e-030
Identities = 49/65 (75%), Positives = 58/65 (89%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVI+HLYPFLKGL+GRQNRTPTIV+VW+ILLA IFSLLWVRIDPF + GP ++
Sbjct: 414 FFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLAYIFSLLWVRIDPFTTRVTGPDIQM 593
Query: 187 CGLDC 201
CG++C
Sbjct: 594 CGINC 608
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 130 bits (278), Expect = 9e-030
Identities = 49/64 (76%), Positives = 58/64 (90%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVI+HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVRIDPF + GP ++
Sbjct: 325 FFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQM 504
Query: 187 CGLD 198
CG++
Sbjct: 505 CGIN 516
>gb|BF259601.3|BF259601 HVSMEf0019M06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019M06f, mRNA sequence
Length = 526
Score = 128 bits (274), Expect = 3e-029
Identities = 51/60 (85%), Positives = 56/60 (93%)
Frame = +1 / +1
Query: 22 VIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEECGLDC 201
VIVHL+PFL GL+GRQNRTPTIVIVWSIL ASI SLLWVR++PFLAK DGPL+EECGLDC
Sbjct: 4 VIVHLHPFLTGLLGRQNRTPTIVIVWSILGASIISLLWVRVNPFLAKTDGPLMEECGLDC 183
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 122 bits (260), Expect = 3e-027
Identities = 47/56 (83%), Positives = 52/56 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGP 174
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP
Sbjct: 485 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGP 652
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 121 bits (258), Expect = 5e-027
Identities = 48/52 (92%), Positives = 51/52 (98%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAK 162
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASI SLLWVR++PFLAK
Sbjct: 297 FFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAK 452
>gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. vulgare cDNA clone HT07B01
3-PRIME, mRNA sequence
Length = 514
Score = 119 bits (254), Expect = 2e-026
Identities = 45/60 (75%), Positives = 54/60 (90%)
Frame = +1 / -1
Query: 22 VIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEECGLDC 201
VIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF + GP ++ CG++C
Sbjct: 514 VIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 335
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 118 bits (253), Expect = 2e-026
Identities = 45/52 (86%), Positives = 50/52 (96%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAK 162
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVW++LLASIFSLLWVR+DPF +
Sbjct: 492 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTR 647
>gb|AV910504.1|AV910504 AV910504 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4m03 5', mRNA sequence
Length = 239
Score = 117 bits (251), Expect = 5e-026
Identities = 48/55 (87%), Positives = 51/55 (92%)
Frame = +1 / +3
Query: 49 KGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEECGLDCN*GM 213
KGL+GRQNRTPTIVIVWSILLASI SLLWVR++PFLAK DGPLLEECGLDC * M
Sbjct: 3 KGLLGRQNRTPTIVIVWSILLASIISLLWVRVNPFLAKTDGPLLEECGLDCT*EM 167
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 116 bits (249), Expect = 9e-026
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL 156
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASI SLLWVR++PFL
Sbjct: 499 FFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLLWVRVNPFL 648
>gb|BJ452844.1|BJ452844 BJ452844 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak40k14 5', mRNA sequence
Length = 551
Score = 110 bits (235), Expect(2) = 4e-025
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +1 / +2
Query: 49 KGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEECGLDCN*GM 213
+G VG+ NRTPTIVIVWSILLASI SLLWVR++PFLAK DGPLLEECGLDC * M
Sbjct: 17 QGSVGKANRTPTIVIVWSILLASIISLLWVRVNPFLAKTDGPLLEECGLDCT*EM 181
Score = 25.4 bits (49), Expect(2) = 4e-025
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1 / +1
Query: 349 WGENGGCGNP 378
+G+ GGCGNP
Sbjct: 379 FGQTGGCGNP 408
>gb|AV927371.1|AV927371 AV927371 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m06 3', mRNA sequence
Length = 683
Score = 110 bits (235), Expect(2) = 5e-025
Identities = 45/51 (88%), Positives = 47/51 (92%)
Frame = +1 / -3
Query: 61 GRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEECGLDCN*GM 213
GRQNRTPTIVIVWSILLASI SLLWVR++PFLAK DGPLLEECGLDC * M
Sbjct: 681 GRQNRTPTIVIVWSILLASIISLLWVRVNPFLAKTDGPLLEECGLDCT*EM 529
Score = 25.4 bits (49), Expect(2) = 5e-025
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1 / -1
Query: 349 WGENGGCGNP 378
+G+ GGCGNP
Sbjct: 335 FGQTGGCGNP 306
>gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21u 3', mRNA sequence
Length = 644
Score = 113 bits (242), Expect = 8e-025
Identities = 43/51 (84%), Positives = 50/51 (98%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLA 159
FF+ WVI+HLYPFLKGL+G+QNRTPTIVIVWSILLASIFSLLWV+IDPF++
Sbjct: 532 FFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFIS 380
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 113 bits (242), Expect = 8e-025
Identities = 43/51 (84%), Positives = 50/51 (98%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLA 159
FF+ WVI+HLYPFLKGL+G+QNRTPTIVIVWSILLASIFSLLWV+IDPF++
Sbjct: 450 FFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFIS 602
>gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0017H01f, mRNA sequence
Length = 755
Score = 113 bits (242), Expect = 8e-025
Identities = 43/51 (84%), Positives = 50/51 (98%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLA 159
FF+ WVI+HLYPFLKGL+G+QNRTPTIVIVWSILLASIFSLLWV+IDPF++
Sbjct: 94 FFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFIS 246
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 369,117,780
Number of Sequences: 312970
Number of extensions: 6629242
Number of successful extensions: 61968
Number of sequences better than 1.0e-020: 96
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7295673948
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)