TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724818.2.1
(1089 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI959749.1|BI959749 HVSMEn0021D20f Hordeum vulgare rachi... 146 2e-063
gb|AL507034.1|AL507034 AL507034 Hordeum vulgare Barke devel... 109 1e-060
gb|BI778536.2|BI778536 EBro07_SQ003_J05_R root, 3 week, red... 132 3e-059
gb|BU998297.1|BU998297 HI10J17r HI Hordeum vulgare subsp. v... 98 2e-052
gb|BU970588.1|BU970588 HB15B14r BC Hordeum vulgare subsp. v... 204 5e-052
gb|BU970614.1|BU970614 HB15C18r BC Hordeum vulgare subsp. v... 204 5e-052
gb|CA023599.1|CA023599 HZ46M07r HZ Hordeum vulgare subsp. v... 203 1e-051
gb|CA017100.1|CA017100 HV14M18u HV Hordeum vulgare subsp. v... 188 7e-047
gb|BI780847.2|BI780847 EBma05_SQ001_C18_R maternal, 12 DPA,... 89 2e-046
gb|CB876810.1|CB876810 HP02H19T HP Hordeum vulgare subsp. v... 171 4e-042
gb|BF255465.2|BF255465 HVSMEf0006O24f Hordeum vulgare seedl... 168 4e-041
gb|CA001848.1|CA001848 HS05M10r HS Hordeum vulgare subsp. v... 163 1e-039
gb|BI947034.1|BI947034 HVSMEl0003F09f Hordeum vulgare spike... 147 3e-039
gb|CB879498.1|CB879498 HP02H19w HP Hordeum vulgare subsp. v... 149 3e-035
gb|BI956922.1|BI956922 HVSMEn0006B06f Hordeum vulgare rachi... 135 5e-031
gb|BE214498.2|BE214498 HV_CEb0003K03f Hordeum vulgare seedl... 87 3e-030
gb|BF627500.2|BF627500 HVSMEb0005A10f Hordeum vulgare seedl... 132 3e-030
gb|BF621296.2|BF621296 HVSMEa0006G08f Hordeum vulgare seedl... 130 2e-029
gb|AL450523.1|AL450523 AL450523 Hordeum vulgare Barke etiol... 128 6e-029
gb|CA023927.1|CA023927 HZ47N13r HZ Hordeum vulgare subsp. v... 84 9e-029
gb|BI960605.1|BI960605 HVSMEn0025F08f Hordeum vulgare rachi... 127 1e-028
gb|BI958103.1|BI958103 HVSMEn0013G07f Hordeum vulgare rachi... 81 4e-028
gb|BF624819.3|BF624819 HVSMEa0017N07f Hordeum vulgare seedl... 121 7e-027
gb|BF260744.3|BF260744 HVSMEf0022N07f Hordeum vulgare seedl... 121 7e-027
gb|BG417359.1|BG417359 HVSMEk0017K24f Hordeum vulgare testa... 107 1e-026
gb|BI959173.1|BI959173 HVSMEn0018I01f Hordeum vulgare rachi... 119 2e-026
gb|BF622294.2|BF622294 HVSMEa0002I23f Hordeum vulgare seedl... 63 2e-023
gb|BI958075.1|BI958075 HVSMEn0013E23f Hordeum vulgare rachi... 76 7e-023
>gb|BI959749.1|BI959749 HVSMEn0021D20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021D20f, mRNA sequence
Length = 642
Score = 146 bits (314), Expect(4) = 2e-063
Identities = 61/94 (64%), Positives = 71/94 (75%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVGAFP VVL +PSLR+LDLRFNDFEG +P LFDRP DAI LN RLR +P N
Sbjct: 341 SNNRFVGAFPTVVLQMPSLRFLDLRFNDFEGGVPRELFDRPFDAIFLNHKRLRLQLPDNF 520
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIV 797
SP SV+VLA+N GC+P ++G M TLNEI+
Sbjct: 521 SYSPVSVIVLANNDFRGCLPANLGNMFDTLNEIL 622
Score = 87.7 bits (185), Expect(4) = 2e-063
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = +1 / +2
Query: 232 WKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAVAGIDL 369
WK+ AIFSDP N T +W GP VC+Y G++CAP PS G LAVAG+DL
Sbjct: 59 WKQQAIFSDPKNLTGDWVGPGVCSYTGVFCAPAPSGGELAVAGVDL 196
Score = 57.0 bits (118), Expect(3) = 4e-028
Identities = 26/49 (53%), Positives = 28/49 (57%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
+G STT G APTK VSG+ PQKRLELRWSSARS
Sbjct: 393 DGIWSTTVGNAPTKRLLLRSSSWRRTSRRKVSGTRPQKRLELRWSSARS 247
Score = 54.2 bits (112), Expect(3) = 4e-028
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = -2 / -1
Query: 365 SMPATASAPSEGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMAVRFH 231
S PATAS+P +G GAQ P+ T GP Q V+ GSEKMA FH
Sbjct: 192 STPATASSPPDGAGAQKTPV*LQTPGPTQSPVRFLGSEKMACCFH 58
Score = 51.9 bits (107), Expect(3) = 4e-028
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = -3 / -1
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
ISLSV+ ILP G QP + L A T T+ GE +L+G RRRL LR+MA
Sbjct: 618 ISLSVSNILPRLAGRQPRKSLLARTMTDTGE*LKLSGSCNRRRLWLRKMA 469
Score = 38.2 bits (77), Expect(4) = 2e-063
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCGV 467
DLALLHLNSNRFCG+
Sbjct: 248 DLALLHLNSNRFCGL 292
Score = 27.6 bits (54), Expect(4) = 2e-063
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3 / +2
Query: 369 NHADIAGHIPADLPL 413
NH DIAG++P++L L
Sbjct: 197 NHGDIAGYLPSELGL 241
>gb|AL507034.1|AL507034 AL507034 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04P17T 5',
mRNA sequence
Length = 664
Score = 109 bits (232), Expect(5) = 1e-060
Identities = 43/65 (66%), Positives = 50/65 (76%)
Frame = +3 / +1
Query: 582 DLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPS 761
DLRFNDFEG +P LFDRP DAI LN NRLR +P N GNSP SV+VLA+N GGC+P S
Sbjct: 469 DLRFNDFEGGVPRELFDRPFDAIFLNHNRLRFQLPDNFGNSPVSVIVLANNDFGGCLPAS 648
Query: 762 IGRMA 776
+G M+
Sbjct: 649 LGNMS 663
Score = 88.1 bits (186), Expect(5) = 1e-060
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = +1 / +3
Query: 232 WKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAVAGIDL 369
WK+ AIFSDP N T +W GP VC+Y G++CAP PS G LAVAG+DL
Sbjct: 120 WKQQAIFSDPKNLTGDWVGPGVCSYTGVFCAPAPSSGELAVAGVDL 257
Score = 57.0 bits (118), Expect(3) = 3e-029
Identities = 26/49 (53%), Positives = 28/49 (57%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
+G STT G APTK VSG+ PQKRLELRWSSARS
Sbjct: 454 DGIWSTTVGNAPTKRLLLRSSSWRRTSRRKVSGTRPQKRLELRWSSARS 308
Score = 55.1 bits (114), Expect(3) = 3e-029
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = -3 / -3
Query: 772 ILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
+LP G QPP+ L A T T+ GELP+L+G RRRL LR+MA
Sbjct: 659 MLPRLAGRQPPKSLLARTMTDTGELPKLSGSWKRRRLWLRKMA 531
Score = 54.7 bits (113), Expect(3) = 3e-029
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = -2 / -1
Query: 365 SMPATASAPSEGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMAVRFH 231
S PATAS+P +G GAQ P+ T GP Q V+ GSEKMA FH
Sbjct: 253 STPATASSPDDGAGAQKTPV*LQTPGPTQSPVRFLGSEKMACCFH 119
Score = 46.0 bits (94), Expect(5) = 1e-060
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYL 581
SNNRFVGAFP VVL +PSLR+L
Sbjct: 402 SNNRFVGAFPTVVLQMPSLRFL 467
Score = 38.2 bits (77), Expect(5) = 1e-060
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCGV 467
DLALLHLNSNRFCG+
Sbjct: 309 DLALLHLNSNRFCGL 353
Score = 27.6 bits (54), Expect(5) = 1e-060
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3 / +3
Query: 369 NHADIAGHIPADLPL 413
NH DIAG++P++L L
Sbjct: 258 NHGDIAGYLPSELGL 302
>gb|BI778536.2|BI778536 EBro07_SQ003_J05_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_J05 5', mRNA sequence
Length = 623
Score = 132 bits (283), Expect(4) = 3e-059
Identities = 54/73 (73%), Positives = 60/73 (82%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVGAFP VVL +PSLR+LDLRFNDFEG +P LFDRP DAI LN NRLR +P N
Sbjct: 402 SNNRFVGAFPTVVLQMPSLRFLDLRFNDFEGGVPRELFDRPFDAIFLNHNRLRXQLPDNF 581
Query: 696 GNSPASVLVLAHN 734
GNSP SV+VLA+N
Sbjct: 582 GNSPVSVIVLANN 620
Score = 88.1 bits (186), Expect(4) = 3e-059
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = +1 / +3
Query: 232 WKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAVAGIDL 369
WK+ AIFSDP N T +W GP VC+Y G++CAP PS G LAVAG+DL
Sbjct: 120 WKQQAIFSDPKNLTGDWVGPGVCSYTGVFCAPAPSSGELAVAGVDL 257
Score = 57.0 bits (118), Expect(3) = 2e-025
Identities = 26/49 (53%), Positives = 28/49 (57%)
Frame = -3 / -2
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARS 422
+G STT G APTK VSG+ PQKRLELRWSSARS
Sbjct: 454 DGIWSTTVGNAPTKRLLLRSSSWRRTSRRKVSGTRPQKRLELRWSSARS 308
Score = 54.7 bits (113), Expect(3) = 2e-025
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = -2 / -2
Query: 365 SMPATASAPSEGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMAVRFH 231
S PATAS+P +G GAQ P+ T GP Q V+ GSEKMA FH
Sbjct: 253 STPATASSPDDGAGAQKTPV*LQTPGPTQSPVRFLGSEKMACCFH 119
Score = 41.8 bits (85), Expect(3) = 2e-025
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = -3 / -2
Query: 733 LCASTSTEAGELPRLAGMGPRRRLELRRMA 644
L A T T+ GELP+L+G RRRL LR+MA
Sbjct: 619 LLARTMTDTGELPKLSGSXKRRRLWLRKMA 530
Score = 38.2 bits (77), Expect(4) = 3e-059
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCGV 467
DLALLHLNSNRFCG+
Sbjct: 309 DLALLHLNSNRFCGL 353
Score = 27.6 bits (54), Expect(4) = 3e-059
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3 / +3
Query: 369 NHADIAGHIPADLPL 413
NH DIAG++P++L L
Sbjct: 258 NHGDIAGYLPSELGL 302
>gb|BU998297.1|BU998297 HI10J17r HI Hordeum vulgare subsp. vulgare cDNA clone HI10J17
5-PRIME, mRNA sequence
Length = 583
Score = 97.7 bits (207), Expect(2) = 2e-031
Identities = 43/67 (64%), Positives = 46/67 (68%)
Frame = -3 / -2
Query: 568 EGSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARSGTPRGRSAGMW 389
+GSASTT+GKAPTK VSG+TPQKRLELRWSSARSG P GR AG
Sbjct: 528 DGSASTTSGKAPTKRLLLRSSSWRRRRRRKVSGTTPQKRLELRWSSARSGRPSGREAGR* 349
Query: 388 PAMSAWL 368
PAMSAWL
Sbjct: 348 PAMSAWL 328
Score = 88.6 bits (187), Expect(3) = 2e-052
Identities = 32/54 (59%), Positives = 37/54 (68%)
Frame = +1 / +2
Query: 175 AAQPPTNPXXXXXXXXXXXWKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPS 336
A+ P NP WK+TAIFSDPSNFT+NW GP+VCAY G+YCAP PS
Sbjct: 131 ASWPFPNPRLRAAYAALQAWKQTAIFSDPSNFTANWQGPDVCAYTGVYCAPAPS 292
Score = 79.9 bits (168), Expect(3) = 2e-052
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPP 620
SNNRFVGAFP VVLALPSL+YLDLRFNDFEG IPP
Sbjct: 476 SNNRFVGAFPEVVLALPSLKYLDLRFNDFEGAIPP 580
Score = 77.1 bits (162), Expect(3) = 2e-052
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = +3 / +2
Query: 369 NHADIAGHIPADLPLGVPDLALLHLNSNRFCGV 467
NHADIAG++PA LPLG+PDLALLHLNSNRFCGV
Sbjct: 329 NHADIAGYLPASLPLGLPDLALLHLNSNRFCGV 427
Score = 58.3 bits (121), Expect(2) = 2e-031
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = -2 / -2
Query: 338 SEGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMAVRF 234
+EG GAQ* P+ AHT GP QL VKLDGSEKMAV F
Sbjct: 294 AEGAGAQ*TPV*AHTSGPCQLAVKLDGSEKMAVCF 190
>gb|BU970588.1|BU970588 HB15B14r BC Hordeum vulgare subsp. vulgare cDNA clone HB15B14
5-PRIME, mRNA sequence
Length = 508
Score = 204 bits (441), Expect = 5e-052
Identities = 79/157 (50%), Positives = 111/157 (70%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN G FP +L LP+++Y+D+RFN+ GP+PP +FD+ +DA+ +N N +P N
Sbjct: 36 SNNLLSGGFPQHILCLPNVKYVDIRFNNLCGPVPPAIFDKKIDALFINDNHFDFELPENF 215
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSPASV+VLA+ RL GCIP S+GRM TLNE+++I+ + C+P ++G L +LTV DVS
Sbjct: 216 GNSPASVIVLANLRLRGCIPASVGRMGGTLNELLMINSGIRSCIPQEIGWLRELTVLDVS 395
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N LQG LP ++ GM L+QL+VA N L G +P +C
Sbjct: 396 FNQLQGTLPESMAGMHALEQLDVAHNELTGHIPEGIC 506
>gb|BU970614.1|BU970614 HB15C18r BC Hordeum vulgare subsp. vulgare cDNA clone HB15C18
5-PRIME, mRNA sequence
Length = 511
Score = 204 bits (441), Expect = 5e-052
Identities = 79/157 (50%), Positives = 111/157 (70%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN G FP +L LP+++Y+D+RFN+ GP+PP +FD+ +DA+ +N N +P N
Sbjct: 36 SNNLLSGGFPQHILCLPNVKYVDIRFNNLCGPVPPAIFDKKIDALFINDNHFDFELPENF 215
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSPASV+VLA+ RL GCIP S+GRM TLNE+++I+ + C+P ++G L +LTV DVS
Sbjct: 216 GNSPASVIVLANLRLRGCIPASVGRMGGTLNELLMINSGIRSCIPQEIGWLRELTVLDVS 395
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N LQG LP ++ GM L+QL+VA N L G +P +C
Sbjct: 396 FNQLQGTLPESMAGMHALEQLDVAHNELTGHIPEGIC 506
>gb|CA023599.1|CA023599 HZ46M07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46M07
5-PRIME, mRNA sequence
Length = 376
Score = 203 bits (438), Expect = 1e-051
Identities = 83/119 (69%), Positives = 97/119 (81%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNR VGAFP VVL LPSLRYLDLR+N+FEGP+P LFDRPLDAI +NSNR R IP N+
Sbjct: 20 SNNRLVGAFPDVVLRLPSLRYLDLRYNEFEGPVPSELFDRPLDAIFINSNRFRFQIPDNV 199
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDV 872
GNSPASVLVLA+N GGC+P S+ M+ TLNEI+LI+ L CVPP++G+LT LTV DV
Sbjct: 200 GNSPASVLVLANNDFGGCLPASVANMSHTLNEIILINTGLKSCVPPELGMLTALTVLDV 376
>gb|CA017100.1|CA017100 HV14M18u HV Hordeum vulgare subsp. vulgare cDNA clone HV14M18
3-PRIME, mRNA sequence
Length = 576
Score = 188 bits (404), Expect = 7e-047
Identities = 77/128 (60%), Positives = 96/128 (75%)
Frame = +3 / +1
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EG +P LFDRP DAI LN NRLR +P N GNSP SV+VLA+N GGC+P S+G M+ T
Sbjct: 1 EGGVPRELFDRPFDAIFLNHNRLRFQLPDNFGNSPVSVIVLANNDFGGCLPASLGNMSDT 180
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
LNEI+LI++ LT C+P +VG+L ++TVFDVS N L GPLPP V GM ++Q ++A NLL
Sbjct: 181 LNEILLINNGLTSCLPAEVGMLREVTVFDVSFNALAGPLPPQVAGMQKVEQFDIAHNLLS 360
Query: 963 GPVPSAVC 986
G VP AVC
Sbjct: 361 GTVPEAVC 384
Score = 126 bits (270), Expect = 2e-028
Identities = 63/114 (55%), Positives = 72/114 (63%)
Frame = -3 / -2
Query: 985 HTADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSS 806
HTA GT P SR A +C IP T GGSGP R L LTSNTV+ S PT G VR
Sbjct: 383 HTASGTVPDSRLCAMSNCSTFCIPATCGGSGPARALKLTSNTVTSRSIPTSAGRHEVRPL 204
Query: 805 SMRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
MR ISLSV+ +LP G QPP+ L A T T+ GELP+L+G RRRL LR+MA
Sbjct: 203 LMRRISLSVSDMLPRLAGRQPPKSLLARTMTDTGELPKLSGSWKRRRLWLRKMA 42
>gb|BI780847.2|BI780847 EBma05_SQ001_C18_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_C18 5', mRNA sequence
Length = 506
Score = 88.6 bits (187), Expect(4) = 2e-046
Identities = 35/44 (79%), Positives = 38/44 (86%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDA 647
SNNRFVGAFP VVL +PSLR+LDLRFNDFEG +P LFDRP DA
Sbjct: 373 SNNRFVGAFPTVVLQMPSLRFLDLRFNDFEGGVPRELFDRPFDA 504
Score = 88.1 bits (186), Expect(4) = 2e-046
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = +1 / +1
Query: 232 WKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAVAGIDL 369
WK+ AIFSDP N T +W GP VC+Y G++CAP PS G LAVAG+DL
Sbjct: 91 WKQQAIFSDPKNLTGDWVGPGVCSYTGVFCAPAPSSGELAVAGVDL 228
Score = 38.2 bits (77), Expect(4) = 2e-046
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGV 467
DLALLHLNSNRFCG+
Sbjct: 280 DLALLHLNSNRFCGL 324
Score = 27.6 bits (54), Expect(4) = 2e-046
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NH DIAG++P++L L
Sbjct: 229 NHGDIAGYLPSELGL 273
>gb|CB876810.1|CB876810 HP02H19T HP Hordeum vulgare subsp. vulgare cDNA clone HP02H19
5-PRIME, mRNA sequence
Length = 648
Score = 171 bits (369), Expect = 4e-042
Identities = 67/133 (50%), Positives = 93/133 (69%)
Frame = +3 / +2
Query: 588 RFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIG 767
R N+ GP+PP +FD+ +DA+ +N N +P N GNSPASV+VLA+ RL GCIP S+G
Sbjct: 8 RVNNLCGPVPPAIFDKKIDALFINDNHFDFELPENFGNSPASVIVLANLRLRGCIPASVG 187
Query: 768 RMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVA 947
RM TLNE+++I+ + C+P ++G L +LTV DVS N LQG LP ++ GM L+QL+VA
Sbjct: 188 RMGGTLNELLMINSGIRSCIPQEIGWLRELTVLDVSFNQLQGTLPESMAGMHALEQLDVA 367
Query: 948 GNLLRGPVPSAVC 986
N L G +P +C
Sbjct: 368 HNELTGHIPEGIC 406
>gb|BF255465.2|BF255465 HVSMEf0006O24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006O24f, mRNA sequence
Length = 603
Score = 168 bits (362), Expect = 4e-041
Identities = 65/127 (51%), Positives = 90/127 (70%)
Frame = +3 / +2
Query: 606 GPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATL 785
GP+PP +FD+ +DA+ +N N +P N GNSPASV+VLA+ RL GCIP S+GRM TL
Sbjct: 2 GPVPPAIFDKKIDALFINDNHFDFELPENFGNSPASVIVLANLRLRGCIPASVGRMGGTL 181
Query: 786 NEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRG 965
NE+++I+ + C+P ++G L +LTV DVS N LQG LP ++ GM L+QL+VA N L G
Sbjct: 182 NELLMINSGIRSCIPQEIGWLRELTVLDVSFNQLQGTLPESMAGMHALEQLDVAHNELTG 361
Query: 966 PVPSAVC 986
+P +C
Sbjct: 362 HIPEGIC 382
>gb|CA001848.1|CA001848 HS05M10r HS Hordeum vulgare subsp. vulgare cDNA clone HS05M10
5-PRIME, mRNA sequence
Length = 451
Score = 163 bits (351), Expect = 1e-039
Identities = 67/115 (58%), Positives = 83/115 (72%)
Frame = +3 / +1
Query: 642 DAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTG 821
DAI LN NR R IP N+GNSP SV+VL+HN GC+P SI M+ TLNE++LI++ L
Sbjct: 10 DAIFLNHNRFRFKIPDNIGNSPVSVIVLSHNTFQGCLPASIANMSGTLNELLLINNGLKS 189
Query: 822 CVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
C+PP++G L +LTV DVS N L GPL V G+ L+QLNVA NLL GP+P AVC
Sbjct: 190 CLPPEIGRLRELTVLDVSHNQLAGPLTQEVAGLRKLEQLNVAHNLLSGPIPQAVC 354
Score = 103 bits (219), Expect = 2e-021
Identities = 56/114 (49%), Positives = 66/114 (57%)
Frame = -3 / -3
Query: 985 HTADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSS 806
HTA G GP SR ATLSC P T+ SGP WL LTS+TVS RP GG +R
Sbjct: 353 HTAWGIGPESRLCATLSCSSFLSPATSCVSGPASWLWLTSSTVSSRRRPISGGRHDLRPL 174
Query: 805 SMRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
M SLSV +L + G P + L T TE GELP L+G+ R+RL LR+MA
Sbjct: 173 LMSKSSLSVPDMLAMLAGRHPWKVLWERTMTETGELPMLSGILKRKRLWLRKMA 12
>gb|BI947034.1|BI947034 HVSMEl0003F09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0003F09f, mRNA sequence
Length = 1107
Score = 147 bits (315), Expect(2) = 3e-039
Identities = 59/101 (58%), Positives = 77/101 (76%)
Frame = +3 / +1
Query: 684 PANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTV 863
P N GNSP SV+VLA+N GGC+P S+G M+ TLNEI+LI++ LT C+P +VG+L ++TV
Sbjct: 67 PDNFGNSPVSVIVLANNDFGGCLPASLGNMSDTLNEILLINNGLTSCLPAEVGMLREVTV 246
Query: 864 FDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
FDVS N L GPLPP V GM ++ +++A NLL G VP AVC
Sbjct: 247 FDVSFNALAGPLPPQVAGMQKVEHVDIAHNLLSGTVPEAVC 369
Score = 111 bits (238), Expect = 5e-024
Identities = 55/101 (54%), Positives = 63/101 (62%)
Frame = -3 / -2
Query: 985 HTADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSS 806
HTA GT P SR A +C IP T GGSGP R L LTSNTV+ S PT G VR
Sbjct: 368 HTASGTVPDSRLCAMSTCSTFCIPATCGGSGPARALKLTSNTVTSRSIPTSAGRHEVRPL 189
Query: 805 SMRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAG 683
MR ISLSV+ +LP G QPP+ L A T T+ GELP+L+G
Sbjct: 188 LMRRISLSVSDMLPRLAGRQPPKSLLARTMTDTGELPKLSG 66
Score = 35.4 bits (71), Expect(2) = 3e-039
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3 / +3
Query: 624 LFDRPLDAILLNSNRLR 674
LFDRP DAI LN NRLR
Sbjct: 6 LFDRPFDAIFLNHNRLR 56
>gb|CB879498.1|CB879498 HP02H19w HP Hordeum vulgare subsp. vulgare cDNA clone HP02H19
3-PRIME, mRNA sequence
Length = 648
Score = 149 bits (319), Expect = 3e-035
Identities = 59/118 (50%), Positives = 82/118 (69%)
Frame = +3 / -2
Query: 633 RPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDD 812
+ +DA+ +N N +P N GNSPASV+VLA+ RL GCIP S+GRM TLNE+++I+
Sbjct: 647 KKIDALFINDNHFDFELPENFGNSPASVIVLANLRLRGCIPASVGRMGGTLNELLMINSG 468
Query: 813 LTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
+ C+P ++G L +LTV DVS N LQG LP ++ GM L+QL+VA N L G +P +C
Sbjct: 467 IRSCIPQEIGWLRELTVLDVSFNQLQGTLPESMAGMHALEQLDVAHNELTGHIPEGIC 294
>gb|BI956922.1|BI956922 HVSMEn0006B06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0006B06f, mRNA sequence
Length = 637
Score = 135 bits (289), Expect = 5e-031
Identities = 56/114 (49%), Positives = 80/114 (70%)
Frame = +3 / +1
Query: 645 AILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGC 824
++LLNSN L GP+PANLG+ L LA+N+L G IPPSIG+M +L E++L+++ L+GC
Sbjct: 172 SLLLNSNSLCGPLPANLGSCKVRYLTLANNKLTGPIPPSIGKMQDSLLEVLLLNNQLSGC 351
Query: 825 VPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
VP ++G+LTK TV D N L GP+P + + ++QLN+ GN L VP A+C
Sbjct: 352 VPHELGMLTKTTVIDAGMNQLTGPIPSSFSCLNSVEQLNLGGNRLYVQVPDALC 513
>gb|BE214498.2|BE214498 HV_CEb0003K03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003K03f, mRNA sequence
Length = 713
Score = 87.2 bits (184), Expect(3) = 3e-030
Identities = 39/81 (48%), Positives = 48/81 (59%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLA+LHLNSNRF G SNN GAFP+ + +LPSL+YLDLRFNDF
Sbjct: 374 DLAVLHLNSNRFHGTLPTSMQHMRLLYELDVSNNLLSGAFPSFLTSLPSLKYLDLRFNDF 553
Query: 603 EGPIPPPLFDRPLDAILLNSN 665
+G +P +F R L L +N
Sbjct: 554 DGELPDAVFGRQLSLDALFAN 616
Score = 51.9 bits (107), Expect(3) = 3e-030
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1 / +2
Query: 244 AIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
AI DP N T++W GP VC Y G++CA P D
Sbjct: 194 AITEDPKNLTADWCGPFVCNYTGVFCAAAPDD 289
Score = 31.3 bits (62), Expect(3) = 3e-030
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 690 NLGNSPASVLVLAHNRLGGCI 752
+L NS ASV+VLA+ +L GC+
Sbjct: 650 SLTNSTASVIVLANTKLAGCL 712
>gb|BF627500.2|BF627500 HVSMEb0005A10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005A10f, mRNA sequence
Length = 758
Score = 132 bits (283), Expect = 3e-030
Identities = 55/114 (48%), Positives = 80/114 (70%)
Frame = +3 / +1
Query: 645 AILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGC 824
A+LLN+N+L +PANLG S S L LA+N+L G IPPSI + +L E+VL+++ L+GC
Sbjct: 40 ALLLNNNQLSESLPANLGLSKVSYLALANNKLTGPIPPSIAQAQDSLLEVVLLNNQLSGC 219
Query: 825 VPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
+P ++G+LTK TV D N + GP+P + + ++QLN+AGN L G VP A+C
Sbjct: 220 LPNELGMLTKTTVIDAGMNQITGPIPSSFSCLGSVEQLNLAGNRLYGQVPDALC 381
>gb|BF621296.2|BF621296 HVSMEa0006G08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006G08f, mRNA sequence
Length = 822
Score = 130 bits (278), Expect = 2e-029
Identities = 54/114 (47%), Positives = 79/114 (69%)
Frame = +3 / +2
Query: 645 AILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGC 824
A+LLN+N+L +PANLG S S L LA+N+L G IPPSI + +L E+VL+++ L+GC
Sbjct: 119 ALLLNNNQLSESLPANLGLSKVSYLALANNKLTGPIPPSIAQAQDSLLEVVLLNNQLSGC 298
Query: 825 VPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
+P ++G+LTK TV D N + GP+P + + ++QLN+AGN L G VP +C
Sbjct: 299 LPNELGMLTKTTVIDAGMNQITGPIPSSFSCLGSVKQLNLAGNRLYGQVPDTLC 460
>gb|AL450523.1|AL450523 AL450523 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03A02u 5', mRNA sequence
Length = 562
Score = 128 bits (274), Expect = 6e-029
Identities = 54/114 (47%), Positives = 77/114 (67%)
Frame = +3 / +1
Query: 645 AILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGC 824
A+ LN N + G +PANLG S S L LA+N+L G IPPSI M +L E++L+++ L+GC
Sbjct: 172 ALFLNGNNISGSLPANLGFSKLSYLALANNKLTGPIPPSIANMQDSLLEMLLLNNQLSGC 351
Query: 825 VPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
+P ++G+LTK V D N L GP+P + ++ + QLN+AGN L G VP A+C
Sbjct: 352 LPNELGMLTKTAVIDAGMNQLTGPIPSSFSCLSSV*QLNLAGNRLYGQVPDALC 513
>gb|CA023927.1|CA023927 HZ47N13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47N13
5-PRIME, mRNA sequence
Length = 484
Score = 84.0 bits (177), Expect(2) = 9e-029
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = +3 / +1
Query: 567 SLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGG 746
+L YLDLRFN F G +P +F + LDA+ LN+N+ G IP L +SPA+V+ LA+NRL G
Sbjct: 10 ALIYLDLRFNGFSGELPDEVFAKNLDALFLNNNQFEGQIPETLWSSPATVITLANNRLTG 189
Query: 747 CIPPSIG 767
+P + G
Sbjct: 190 SVPMAYG 210
Score = 63.4 bits (132), Expect(2) = 9e-029
Identities = 25/68 (36%), Positives = 41/68 (60%)
Frame = +3 / +1
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
+ E++ +++ LTGCVP +G L + V D+S N L G LP + ++ ++ LN+A N
Sbjct: 223 VRELLFLNNKLTGCVPEALGFLPYIEVLDLSNNLLSGHLPSTLSCLSGIEVLNIAHNQYT 402
Query: 963 GPVPSAVC 986
G +P VC
Sbjct: 403 GDLPELVC 426
>gb|BI960605.1|BI960605 HVSMEn0025F08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025F08f, mRNA sequence
Length = 673
Score = 127 bits (271), Expect = 1e-028
Identities = 55/113 (48%), Positives = 78/113 (69%)
Frame = +3 / +2
Query: 645 AILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGC 824
++LLNSN L GP+PANLG S L LA+N+L G IPPSIG+M +L E++L+++ L+GC
Sbjct: 167 SLLLNSNSLSGPLPANLGFSKLRYLALANNKLTGPIPPSIGKMQDSLLEVLLLNNQLSGC 346
Query: 825 VPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAV 983
VP ++G+LTK TV D N L GP+P ++ + + LN+ N L G VP A+
Sbjct: 347 VPHELGMLTKTTVIDAGMNQLTGPIPSSLLCLNSGEHLNLGRNRLYGQVPXAL 505
>gb|BI958103.1|BI958103 HVSMEn0013G07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013G07f, mRNA sequence
Length = 646
Score = 81.3 bits (171), Expect(3) = 4e-028
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLA+LHLNSNRF G SNN +GAFP+ + +LPSL+YLDLRFNDF
Sbjct: 297 DLAVLHLNSNRFHGTLPTSMQHMRLLYELDVSNNLXLGAFPSFLTSLPSLKYLDLRFNDF 476
Query: 603 EGPIP 617
+G +P
Sbjct: 477 DGELP 491
Score = 51.9 bits (107), Expect(3) = 4e-028
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1 / +3
Query: 244 AIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
AI DP N T++W GP VC Y G++CA P D
Sbjct: 117 AITEDPKNLTADWCGPFVCNYTGVFCAAAPDD 212
Score = 29.9 bits (59), Expect(3) = 4e-028
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3 / +3
Query: 711 SVLVLAHNRLGGCIP 755
SV+VLA+ +LGGC+P
Sbjct: 594 SVIVLANTKLGGCLP 638
>gb|BF624819.3|BF624819 HVSMEa0017N07f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017N07f, mRNA sequence
Length = 672
Score = 121 bits (259), Expect = 7e-027
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = +3 / +3
Query: 708 ASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHL 887
ASV+VLA+ RL GCIP S+GRM TLNE+++I+ + C+P ++G L +LTV DVS N L
Sbjct: 3 ASVIVLANLRLRGCIPASVGRMGGTLNELLMINSGIRSCIPQEIGWLRELTVLDVSFNQL 182
Query: 888 QGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
QG LP ++ GM L+QL+VA N L G +P +C
Sbjct: 183 QGTLPESMAGMHALEQLDVAHNELTGHIPEGIC 281
>gb|BF260744.3|BF260744 HVSMEf0022N07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022N07f, mRNA sequence
Length = 674
Score = 121 bits (259), Expect = 7e-027
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = +3 / +3
Query: 708 ASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHL 887
ASV+VLA+ RL GCIP S+GRM TLNE+++I+ + C+P ++G L +LTV DVS N L
Sbjct: 3 ASVIVLANLRLRGCIPASVGRMGGTLNELLMINSGIRSCIPQEIGWLRELTVLDVSFNQL 182
Query: 888 QGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
QG LP ++ GM L+QL+VA N L G +P +C
Sbjct: 183 QGTLPESMAGMHALEQLDVAHNELTGHIPEGIC 281
>gb|BG417359.1|BG417359 HVSMEk0017K24f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017K24f, mRNA sequence
Length = 810
Score = 107 bits (228), Expect(2) = 1e-026
Identities = 46/98 (46%), Positives = 66/98 (67%)
Frame = +3 / +2
Query: 690 NLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFD 869
NLG S L LA+N+L G IPPSIG+M +L E++L+++ L+GCVP ++G+LTK TV D
Sbjct: 296 NLGFSKLRYLALANNKLTGPIPPSIGKMQDSLLEVLLLNNQLSGCVPHELGMLTKTTVID 475
Query: 870 VSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAV 983
N L GP+P + + ++QLN+ GN L VP A+
Sbjct: 476 AGMNQLTGPIPSSFSCLNSVEQLNLGGNRLYRQVPDAL 589
Score = 32.7 bits (65), Expect(2) = 1e-026
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3 / +1
Query: 645 AILLNSNRLRGPIPANLG 698
++LLNSN L GP+PA LG
Sbjct: 250 SLLLNSNSLSGPLPAKLG 303
>gb|BI959173.1|BI959173 HVSMEn0018I01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018I01f, mRNA sequence
Length = 694
Score = 119 bits (255), Expect = 2e-026
Identities = 49/102 (48%), Positives = 71/102 (69%)
Frame = +3 / +3
Query: 681 IPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLT 860
+PANLG S S L LA+N+L G IPPSI + +L E+VL+++ L+GC+P ++G+LTK T
Sbjct: 9 LPANLGLSKVSYLALANNKLTGPIPPSIAQAQDSLLEVVLLNNQLSGCLPNELGMLTKTT 188
Query: 861 VFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
V D N + GP+P + + ++QLN+AGN L G VP A+C
Sbjct: 189 VIDAGMNQITGPIPSSFSCLGSVEQLNLAGNRLYGQVPDALC 314
>gb|BF622294.2|BF622294 HVSMEa0002I23f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002I23f, mRNA sequence
Length = 700
Score = 62.9 bits (131), Expect(3) = 2e-023
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +3 / +2
Query: 606 GPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIP 755
GP+PP + + +DA+L+N N + N G SPA V+VLA+ RL GCIP
Sbjct: 536 GPVPPAILKKKIDALLINDNHFNFELTENFGTSPA*VMVLANLRLRGCIP 685
Score = 56.1 bits (116), Expect(3) = 2e-023
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1 / +3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAP 327
+ AI DP N T NW GP+VCAY G++CAP
Sbjct: 165 KRAITDDPKNLTGNWCGPDVCAYYGVFCAP 254
Score = 32.2 bits (64), Expect(3) = 2e-023
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLA+LHLNSNRF G
Sbjct: 352 DLAVLHLNSNRFAG 393
>gb|BI958075.1|BI958075 HVSMEn0013E23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013E23f, mRNA sequence
Length = 642
Score = 75.8 bits (159), Expect(2) = 7e-023
Identities = 33/73 (45%), Positives = 42/73 (57%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLA+LHLNSNRF G SNN GA P+ + +L +L+Y DLRFNDF
Sbjct: 299 DLAVLHLNSNRFHGTLPTSMQHMRLLYELDVSNNLLSGAVPSFLTSLAALKYFDLRFNDF 478
Query: 603 EGPIPPPLFDRPL 641
+G +P +F R L
Sbjct: 479 DGKLPDAVFGRQL 517
Score = 51.9 bits (107), Expect(2) = 7e-023
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1 / +2
Query: 244 AIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
AI DP N T++W GP VC Y G++CA P D
Sbjct: 119 AITEDPKNLTADWCGPFVCNYTGVFCAAAPDD 214
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 306,512,346
Number of Sequences: 312970
Number of extensions: 4534012
Number of successful extensions: 62888
Number of sequences better than 1.0e-020: 38
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 12913347621
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)