TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1724812.2.1
         (804 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA000034.1|CA000034  HS16I09u HS Hordeum vulgare subsp. v...   109   2e-023
gb|AV929760.1|AV929760  AV929760 K. Sato unpublished cDNA li...   100   2e-022
gb|BQ660136.1|BQ660136  HI01C06w HI Hordeum vulgare subsp. v...   100   2e-022
gb|AV927784.1|AV927784  AV927784 K. Sato unpublished cDNA li...   100   2e-022
gb|CA013515.1|CA013515  HT08L06r HT Hordeum vulgare subsp. v...   100   2e-022
gb|BF255286.3|BF255286  HVSMEf0006H07f Hordeum vulgare seedl...   103   1e-021
gb|BQ464840.1|BQ464840  HU01M16T HU Hordeum vulgare subsp. v...   103   2e-021
gb|BQ663266.1|BQ663266  HU01M16w HU Hordeum vulgare subsp. v...   103   2e-021
gb|CA015437.1|CA015437  HT14F01r HT Hordeum vulgare subsp. v...   103   2e-021
gb|BF621553.2|BF621553  HVSMEa0011G05f Hordeum vulgare seedl...   100   5e-021
gb|BF622661.2|BF622661  HVSMEa0007K11f Hordeum vulgare seedl...    97   9e-021
>gb|CA000034.1|CA000034 HS16I09u HS Hordeum vulgare subsp. vulgare cDNA clone HS16I09
           3-PRIME, mRNA sequence
          Length = 402

 Score =  109 bits (233), Expect = 2e-023
 Identities = 47/97 (48%), Positives = 53/97 (54%)
 Frame = +3 / -3

                                                                       
Query: 192 VPVVAFPQWGDQCTDAKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXX 371
           +PVVAFPQWGDQCTDAK+LV+E  MGVR+  PL              GP+A         
Sbjct: 400 LPVVAFPQWGDQCTDAKYLVEEFKMGVRIGAPLGRNAVRDAVEDAVAGPDASAMLENARA 221

                                                
Query: 372 XXXXXXXXXXPGGSSDAHVQAFVDEVSRRACGVQVAK 482
                     PGGSSD HVQAFVDEV  RA G +  K
Sbjct: 220 WSAPARTAVAPGGSSDRHVQAFVDEVVARASGARADK 110
>gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd16h10 3', mRNA sequence
          Length = 669

 Score =  100 bits (213), Expect(2) = 2e-022
 Identities = 36/76 (47%), Positives = 52/76 (68%)
 Frame = +3 / -3

                                                                       
Query: 51  DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
           D F   V G+G VV W+PQ RVL+HPS ACF++HCGWNST+E +  GVP + +P + DQ 
Sbjct: 400 DAFKRRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQF 221

                           
Query: 231 TDAKFLVDELGMGVRL 278
            +  ++ +  G GV++
Sbjct: 220 CNQSYICNVWGTGVKI 173

 Score = 24.9 bits (48), Expect(2) = 2e-022
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1 / -3

                    
Query: 1   GRPFLWVVR 27
           GRPFLW VR
Sbjct: 463 GRPFLWTVR 437
>gb|BQ660136.1|BQ660136 HI01C06w HI Hordeum vulgare subsp. vulgare cDNA clone HI01C06
           3-PRIME, mRNA sequence
          Length = 668

 Score =  100 bits (212), Expect(2) = 2e-022
 Identities = 41/76 (53%), Positives = 52/76 (68%)
 Frame = +3 / -3

                                                                       
Query: 45  LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
           LP+GF  + AGRG VVPW  Q  VLAH +   FLTHCGWNS LE++ AGVP++ FP   D
Sbjct: 663 LPEGFAAACAGRGLVVPWCCQVEVLAHAALGGFLTHCGWNSVLESVWAGVPMLCFPLLTD 484

                           
Query: 225 QCTDAKFLVDELGMGV 272
           Q T+ + +V E  +GV
Sbjct: 483 QFTNRRLVVREWRVGV 436

 Score = 25.4 bits (49), Expect(2) = 2e-022
 Identities = 15/67 (22%), Positives = 21/67 (31%)
 Frame = +3 / -3

                                                                       
Query: 258 LGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAF 437
           +G+ +  RG +              G E                    PGGSS      F
Sbjct: 444 VGVPIGDRGKVFADEVAARIQGVISGEEGQQLRQALKKVRAKLKAAVAPGGSSQRSFDDF 265

                  
Query: 438 VDEVSRR 458
           VDE++ R
Sbjct: 264 VDELTGR 244
>gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd3k12 3', mRNA sequence
          Length = 651

 Score =  100 bits (213), Expect(2) = 2e-022
 Identities = 36/76 (47%), Positives = 52/76 (68%)
 Frame = +3 / -1

                                                                       
Query: 51  DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
           D F   V G+G VV W+PQ RVL+HPS ACF++HCGWNST+E +  GVP + +P + DQ 
Sbjct: 387 DAFKRRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQF 208

                           
Query: 231 TDAKFLVDELGMGVRL 278
            +  ++ +  G GV++
Sbjct: 207 CNQSYICNVWGTGVKI 160

 Score = 24.9 bits (48), Expect(2) = 2e-022
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1 / -1

                    
Query: 1   GRPFLWVVR 27
           GRPFLW VR
Sbjct: 450 GRPFLWTVR 424
>gb|CA013515.1|CA013515 HT08L06r HT Hordeum vulgare subsp. vulgare cDNA clone HT08L06
           5-PRIME, mRNA sequence
          Length = 634

 Score =  100 bits (212), Expect(2) = 2e-022
 Identities = 36/76 (47%), Positives = 52/76 (68%)
 Frame = +3 / +1

                                                                       
Query: 51  DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
           D F   V G+G VV W+PQ RVL+HPS ACF++HCGWNST+E +  GVP + +P + DQ 
Sbjct: 226 DAFKRRVEGKGLVVGWAPQQRVLSHPSIACFVSHCGWNSTMEGLRHGVPFLCWPYFADQF 405

                           
Query: 231 TDAKFLVDELGMGVRL 278
            +  ++ +  G GV++
Sbjct: 406 CNQSYICNVWGTGVKI 453

 Score = 25.4 bits (49), Expect(2) = 2e-022
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1 / +1

                    
Query: 4   RPFLWVVRP 30
           RPFLW VRP
Sbjct: 166 RPFLWAVRP 192
>gb|BF255286.3|BF255286 HVSMEf0006H07f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0006H07f, mRNA sequence
          Length = 505

 Score =  103 bits (220), Expect = 1e-021
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = +3 / +2

                                                                       
Query: 51  DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
           DGF  +   RG VV W  Q RVL+HP+  CF+THCGWNSTLE +A G PVVA PQW DQ 
Sbjct: 11  DGFDAAGDVRGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQD 190

                  
Query: 231 TDAKFLV 251
           T+A+ +V
Sbjct: 191 TNARLVV 211
>gb|BQ464840.1|BQ464840 HU01M16T HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
           5-PRIME, mRNA sequence
          Length = 571

 Score =  103 bits (219), Expect = 2e-021
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = +3 / +1

                                                                       
Query: 51  DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
           DGF  +   RG VV W  Q RVL+HP+  CF+THCGWNSTLE +A G PVVA PQW DQ 
Sbjct: 91  DGFDVAGDVRGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQD 270

                  
Query: 231 TDAKFLV 251
           T+A+ +V
Sbjct: 271 TNARLVV 291
>gb|BQ663266.1|BQ663266 HU01M16w HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
           3-PRIME, mRNA sequence
          Length = 570

 Score =  103 bits (219), Expect = 2e-021
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = +3 / -1

                                                                       
Query: 51  DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
           DGF  +   RG VV W  Q RVL+HP+  CF+THCGWNSTLE +A G PVVA PQW DQ 
Sbjct: 480 DGFDVAGDVRGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQD 301

                  
Query: 231 TDAKFLV 251
           T+A+ +V
Sbjct: 300 TNARLVV 280
>gb|CA015437.1|CA015437 HT14F01r HT Hordeum vulgare subsp. vulgare cDNA clone HT14F01
           5-PRIME, mRNA sequence
          Length = 510

 Score =  103 bits (219), Expect = 2e-021
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = +3 / +1

                                                                       
Query: 51  DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
           DGF  +   RG VV W  Q RVL+HP+  CF+THCGWNSTLE +A G PVVA PQW DQ 
Sbjct: 130 DGFDVAGDVRGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQD 309

                  
Query: 231 TDAKFLV 251
           T+A+ +V
Sbjct: 310 TNARLVV 330
>gb|BF621553.2|BF621553 HVSMEa0011G05f Hordeum vulgare seedling shoot EST library
           HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
           cDNA clone HVSMEa0011G05f, mRNA sequence
          Length = 797

 Score =  100 bits (212), Expect(2) = 5e-021
 Identities = 38/67 (56%), Positives = 44/67 (65%)
 Frame = +3 / +3

                                                                       
Query: 81  GAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDEL 260
           G +V W PQ  VLAH +  CF+THCGWNSTLE +  GVP V  P W DQ T AK++    
Sbjct: 48  GLIVSWCPQLEVLAHRAIGCFVTHCGWNSTLEALVNGVPFVGIPHWADQPTIAKYVESAW 227

                  
Query: 261 GMGVRLR 281
           GMGVR R
Sbjct: 228 GMGVRAR 248

 Score = 23.1 bits (44), Expect(2) = 5e-021
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3 / +3

                           
Query: 405 GGSSDAHVQAFVDEVS 452
           GGSSD HV  F  + S
Sbjct: 384 GGSSDKHVTEFATKYS 431
>gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedling shoot EST library
           HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
           cDNA clone HVSMEa0007K11f, mRNA sequence
          Length = 697

 Score = 97.3 bits (206), Expect(2) = 9e-021
 Identities = 37/67 (55%), Positives = 43/67 (64%)
 Frame = +3 / +2

                                                                       
Query: 81  GAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDEL 260
           G +  W PQ  VLAH +  CF+THCGWNSTLE +  GVP V  P W DQ T AK++    
Sbjct: 230 GLIGSWCPQLEVLAHRAIGCFITHCGWNSTLEALVNGVPFVGIPHWADQPTIAKYVESAW 409

                  
Query: 261 GMGVRLR 281
           GMGVR R
Sbjct: 410 GMGVRAR 430

 Score = 22.6 bits (43), Expect(2) = 9e-021
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1 / +2

                   
Query: 4   RPFLWVVR 27
           +PFLWVVR
Sbjct: 152 KPFLWVVR 175
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 404,127,151
Number of Sequences: 312970
Number of extensions: 9140222
Number of successful extensions: 287043
Number of sequences better than 1.0e-020: 15
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9052303885
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)