TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724812.2.1
(804 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA000034.1|CA000034 HS16I09u HS Hordeum vulgare subsp. v... 109 2e-023
gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA li... 100 2e-022
gb|BQ660136.1|BQ660136 HI01C06w HI Hordeum vulgare subsp. v... 100 2e-022
gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA li... 100 2e-022
gb|CA013515.1|CA013515 HT08L06r HT Hordeum vulgare subsp. v... 100 2e-022
gb|BF255286.3|BF255286 HVSMEf0006H07f Hordeum vulgare seedl... 103 1e-021
gb|BQ464840.1|BQ464840 HU01M16T HU Hordeum vulgare subsp. v... 103 2e-021
gb|BQ663266.1|BQ663266 HU01M16w HU Hordeum vulgare subsp. v... 103 2e-021
gb|CA015437.1|CA015437 HT14F01r HT Hordeum vulgare subsp. v... 103 2e-021
gb|BF621553.2|BF621553 HVSMEa0011G05f Hordeum vulgare seedl... 100 5e-021
gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedl... 97 9e-021
>gb|CA000034.1|CA000034 HS16I09u HS Hordeum vulgare subsp. vulgare cDNA clone HS16I09
3-PRIME, mRNA sequence
Length = 402
Score = 109 bits (233), Expect = 2e-023
Identities = 47/97 (48%), Positives = 53/97 (54%)
Frame = +3 / -3
Query: 192 VPVVAFPQWGDQCTDAKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXX 371
+PVVAFPQWGDQCTDAK+LV+E MGVR+ PL GP+A
Sbjct: 400 LPVVAFPQWGDQCTDAKYLVEEFKMGVRIGAPLGRNAVRDAVEDAVAGPDASAMLENARA 221
Query: 372 XXXXXXXXXXPGGSSDAHVQAFVDEVSRRACGVQVAK 482
PGGSSD HVQAFVDEV RA G + K
Sbjct: 220 WSAPARTAVAPGGSSDRHVQAFVDEVVARASGARADK 110
>gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16h10 3', mRNA sequence
Length = 669
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 36/76 (47%), Positives = 52/76 (68%)
Frame = +3 / -3
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V G+G VV W+PQ RVL+HPS ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 400 DAFKRRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQF 221
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ + G GV++
Sbjct: 220 CNQSYICNVWGTGVKI 173
Score = 24.9 bits (48), Expect(2) = 2e-022
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / -3
Query: 1 GRPFLWVVR 27
GRPFLW VR
Sbjct: 463 GRPFLWTVR 437
>gb|BQ660136.1|BQ660136 HI01C06w HI Hordeum vulgare subsp. vulgare cDNA clone HI01C06
3-PRIME, mRNA sequence
Length = 668
Score = 100 bits (212), Expect(2) = 2e-022
Identities = 41/76 (53%), Positives = 52/76 (68%)
Frame = +3 / -3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP+GF + AGRG VVPW Q VLAH + FLTHCGWNS LE++ AGVP++ FP D
Sbjct: 663 LPEGFAAACAGRGLVVPWCCQVEVLAHAALGGFLTHCGWNSVLESVWAGVPMLCFPLLTD 484
Query: 225 QCTDAKFLVDELGMGV 272
Q T+ + +V E +GV
Sbjct: 483 QFTNRRLVVREWRVGV 436
Score = 25.4 bits (49), Expect(2) = 2e-022
Identities = 15/67 (22%), Positives = 21/67 (31%)
Frame = +3 / -3
Query: 258 LGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAF 437
+G+ + RG + G E PGGSS F
Sbjct: 444 VGVPIGDRGKVFADEVAARIQGVISGEEGQQLRQALKKVRAKLKAAVAPGGSSQRSFDDF 265
Query: 438 VDEVSRR 458
VDE++ R
Sbjct: 264 VDELTGR 244
>gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3k12 3', mRNA sequence
Length = 651
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 36/76 (47%), Positives = 52/76 (68%)
Frame = +3 / -1
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V G+G VV W+PQ RVL+HPS ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 387 DAFKRRVEGKGLVVGWAPQQRVLSHPSVACFVSHCGWNSTMEGLRHGVPFLCWPYFADQF 208
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ + G GV++
Sbjct: 207 CNQSYICNVWGTGVKI 160
Score = 24.9 bits (48), Expect(2) = 2e-022
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / -1
Query: 1 GRPFLWVVR 27
GRPFLW VR
Sbjct: 450 GRPFLWTVR 424
>gb|CA013515.1|CA013515 HT08L06r HT Hordeum vulgare subsp. vulgare cDNA clone HT08L06
5-PRIME, mRNA sequence
Length = 634
Score = 100 bits (212), Expect(2) = 2e-022
Identities = 36/76 (47%), Positives = 52/76 (68%)
Frame = +3 / +1
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V G+G VV W+PQ RVL+HPS ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 226 DAFKRRVEGKGLVVGWAPQQRVLSHPSIACFVSHCGWNSTMEGLRHGVPFLCWPYFADQF 405
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ + G GV++
Sbjct: 406 CNQSYICNVWGTGVKI 453
Score = 25.4 bits (49), Expect(2) = 2e-022
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / +1
Query: 4 RPFLWVVRP 30
RPFLW VRP
Sbjct: 166 RPFLWAVRP 192
>gb|BF255286.3|BF255286 HVSMEf0006H07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006H07f, mRNA sequence
Length = 505
Score = 103 bits (220), Expect = 1e-021
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = +3 / +2
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
DGF + RG VV W Q RVL+HP+ CF+THCGWNSTLE +A G PVVA PQW DQ
Sbjct: 11 DGFDAAGDVRGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQD 190
Query: 231 TDAKFLV 251
T+A+ +V
Sbjct: 191 TNARLVV 211
>gb|BQ464840.1|BQ464840 HU01M16T HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
5-PRIME, mRNA sequence
Length = 571
Score = 103 bits (219), Expect = 2e-021
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = +3 / +1
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
DGF + RG VV W Q RVL+HP+ CF+THCGWNSTLE +A G PVVA PQW DQ
Sbjct: 91 DGFDVAGDVRGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQD 270
Query: 231 TDAKFLV 251
T+A+ +V
Sbjct: 271 TNARLVV 291
>gb|BQ663266.1|BQ663266 HU01M16w HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
3-PRIME, mRNA sequence
Length = 570
Score = 103 bits (219), Expect = 2e-021
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = +3 / -1
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
DGF + RG VV W Q RVL+HP+ CF+THCGWNSTLE +A G PVVA PQW DQ
Sbjct: 480 DGFDVAGDVRGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQD 301
Query: 231 TDAKFLV 251
T+A+ +V
Sbjct: 300 TNARLVV 280
>gb|CA015437.1|CA015437 HT14F01r HT Hordeum vulgare subsp. vulgare cDNA clone HT14F01
5-PRIME, mRNA sequence
Length = 510
Score = 103 bits (219), Expect = 2e-021
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = +3 / +1
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
DGF + RG VV W Q RVL+HP+ CF+THCGWNSTLE +A G PVVA PQW DQ
Sbjct: 130 DGFDVAGDVRGMVVGWCDQVRVLSHPAVGCFVTHCGWNSTLEAVACGAPVVAVPQWSDQD 309
Query: 231 TDAKFLV 251
T+A+ +V
Sbjct: 310 TNARLVV 330
>gb|BF621553.2|BF621553 HVSMEa0011G05f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011G05f, mRNA sequence
Length = 797
Score = 100 bits (212), Expect(2) = 5e-021
Identities = 38/67 (56%), Positives = 44/67 (65%)
Frame = +3 / +3
Query: 81 GAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDEL 260
G +V W PQ VLAH + CF+THCGWNSTLE + GVP V P W DQ T AK++
Sbjct: 48 GLIVSWCPQLEVLAHRAIGCFVTHCGWNSTLEALVNGVPFVGIPHWADQPTIAKYVESAW 227
Query: 261 GMGVRLR 281
GMGVR R
Sbjct: 228 GMGVRAR 248
Score = 23.1 bits (44), Expect(2) = 5e-021
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3 / +3
Query: 405 GGSSDAHVQAFVDEVS 452
GGSSD HV F + S
Sbjct: 384 GGSSDKHVTEFATKYS 431
>gb|BF622661.2|BF622661 HVSMEa0007K11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007K11f, mRNA sequence
Length = 697
Score = 97.3 bits (206), Expect(2) = 9e-021
Identities = 37/67 (55%), Positives = 43/67 (64%)
Frame = +3 / +2
Query: 81 GAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDEL 260
G + W PQ VLAH + CF+THCGWNSTLE + GVP V P W DQ T AK++
Sbjct: 230 GLIGSWCPQLEVLAHRAIGCFITHCGWNSTLEALVNGVPFVGIPHWADQPTIAKYVESAW 409
Query: 261 GMGVRLR 281
GMGVR R
Sbjct: 410 GMGVRAR 430
Score = 22.6 bits (43), Expect(2) = 9e-021
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / +2
Query: 4 RPFLWVVR 27
+PFLWVVR
Sbjct: 152 KPFLWVVR 175
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 404,127,151
Number of Sequences: 312970
Number of extensions: 9140222
Number of successful extensions: 287043
Number of sequences better than 1.0e-020: 15
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9052303885
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)