TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716365.2.1
(936 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ660212.1|BQ660212 HI01I09w HI Hordeum vulgare subsp. v... 335 1e-091
gb|BU995645.1|BU995645 HM10O13r HM Hordeum vulgare subsp. v... 289 1e-077
gb|BQ465179.1|BQ465179 HU02N24r HU Hordeum vulgare subsp. v... 255 1e-069
gb|BQ470446.1|BQ470446 HX03A05r HX Hordeum vulgare subsp. v... 259 6e-069
gb|BQ470603.1|BQ470603 HX03H14r HX Hordeum vulgare subsp. v... 259 6e-069
gb|CA007256.1|CA007256 HU07F09r HU Hordeum vulgare subsp. v... 259 6e-069
gb|BF254638.2|BF254638 HVSMEf0004J12f Hordeum vulgare seedl... 191 6e-068
gb|CB881798.1|CB881798 HM10O13w HM Hordeum vulgare subsp. v... 237 2e-062
gb|CB874708.1|CB874708 HX06B10w HX Hordeum vulgare subsp. v... 238 4e-062
gb|BG415060.1|BG415060 HVSMEk0004P24f Hordeum vulgare testa... 222 2e-057
gb|BF622824.2|BF622824 HVSMEa0009C21f Hordeum vulgare seedl... 179 2e-044
gb|BJ544669.1|BJ544669 BJ544669 K. Sato unpublished cDNA li... 176 2e-043
gb|BE421430.1|BE421430 HWM009.C03 ITEC HWM Barley Leaf Libr... 170 1e-041
gb|AV926878.1|AV926878 AV926878 K. Sato unpublished cDNA li... 170 1e-041
gb|BU997959.1|BU997959 HI09I16r HI Hordeum vulgare subsp. v... 170 1e-041
gb|CB875785.1|CB875785 HX09F12w HX Hordeum vulgare subsp. v... 170 1e-041
gb|AJ462548.1|AJ462548 AJ462548 S00002 Hordeum vulgare subs... 168 3e-041
gb|AV834352.1|AV834352 AV834352 K. Sato unpublished cDNA li... 164 1e-040
gb|BF626879.2|BF626879 HVSMEb0001J09f Hordeum vulgare seedl... 166 2e-040
gb|BJ546140.1|BJ546140 BJ546140 K. Sato unpublished cDNA li... 164 8e-040
gb|BJ546986.1|BJ546986 BJ546986 K. Sato unpublished cDNA li... 150 1e-035
gb|BJ547950.1|BJ547950 BJ547950 K. Sato unpublished cDNA li... 150 1e-035
gb|BJ548315.1|BJ548315 BJ548315 K. Sato unpublished cDNA li... 150 1e-035
gb|BJ546987.1|BJ546987 BJ546987 K. Sato unpublished cDNA li... 133 1e-030
gb|BQ665321.1|BQ665321 HX03A05u HX Hordeum vulgare subsp. v... 127 2e-029
gb|AV919193.1|AV919193 AV919193 K. Sato unpublished cDNA li... 127 9e-029
gb|AV832731.1|AV832731 AV832731 K. Sato unpublished cDNA li... 122 4e-027
gb|BJ547677.1|BJ547677 BJ547677 K. Sato unpublished cDNA li... 122 4e-027
gb|AJ432746.1|AJ432746 AJ432746 S00002 Hordeum vulgare subs... 117 1e-026
gb|CA025871.1|CA025871 HZ53G05r HZ Hordeum vulgare subsp. v... 114 1e-025
>gb|BQ660212.1|BQ660212 HI01I09w HI Hordeum vulgare subsp. vulgare cDNA clone HI01I09
3-PRIME, mRNA sequence
Length = 677
Score = 335 bits (725), Expect(2) = 1e-091
Identities = 136/143 (95%), Positives = 138/143 (96%)
Frame = -3 / -3
Query: 706 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRF 527
FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRF
Sbjct: 675 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRF 496
Query: 526 PESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKP 347
PESPVV FAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKP
Sbjct: 495 PESPVVGFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKP 316
Query: 346 VEIPRSVASSSQKATSAAEKGSD 278
VEIPR AS+SQKAT +AEKG D
Sbjct: 315 VEIPRPGASTSQKATPSAEKGPD 247
Score = 292 bits (633), Expect = 1e-078
Identities = 125/142 (88%), Positives = 130/142 (91%)
Frame = +3 / +2
Query: 279 SEPFSAADVAFWLDEATERGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC 458
S PFSA VAF L EA RGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL ANRC
Sbjct: 248 SGPFSADGVAF*LVEAPGRGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL*ANRC 427
Query: 459 *GSLMSNPLIRSLAAKLTTGDSGNLKGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQ 638
GSL+SNPL+RSLAAK TTGDSGNL+G PTTLN+VALFPEPLNGVLPKRSSYKNMP VHQ
Sbjct: 428 CGSLISNPLMRSLAAKPTTGDSGNLRGWPTTLNSVALFPEPLNGVLPKRSSYKNMPKVHQ 607
Query: 639 STALPCPSPFIISGAKYSWVPT 704
STALPCPSPF+ISGAKYSWVPT
Sbjct: 608 STALPCPSPFMISGAKYSWVPT 673
Score = 215 bits (465), Expect = 2e-055
Identities = 92/142 (64%), Positives = 109/142 (76%)
Frame = -2 / -2
Query: 704 CWHP*VLGT*NYKGRGAWKCCRLVDIWHILV*ASLRQDTIQRFWE*GDIVQRSWTTLKVP 525
CWHP*+LGT*++KGRGAW+CCRLVD WHILV* S RQD+IQRF E G+ +Q W +VP
Sbjct: 673 CWHP*ILGT*DHKGRGAWECCRLVDFWHILV*TSFRQDSIQRFGEQGNAIQCCWPAPQVP 494
Query: 524 RITCSEFCCKGSY*GIAHQGTSASISV*AWSHRNKTAPVL*RC*LGINQVCHST*YPQAS 345
RITC FCCKGS+ G+A QG +ASI + A S RNK APVL*RC*LGI++VC+S+ YPQAS
Sbjct: 493 RITCCGFCCKGSHKGVADQGATASIGLQARSDRNKAAPVL*RC*LGIDKVCYSSRYPQAS 314
Query: 344 *DPSFCSFIKPEGYISR*ERLR 279
*+PS S K EG ER R
Sbjct: 313 *NPSARSLDKSEGNAISRERSR 248
Score = 214 bits (461), Expect = 8e-055
Identities = 88/124 (70%), Positives = 97/124 (78%)
Frame = +2 / +1
Query: 335 RDLNWLGDIRWSGTPD*CPINTFKERVLFYFCGSTLIR*SMLRFLDEQSPNKIPCSKTHY 514
RD NWLGDI S TP CP+NTFKERVL YFC S L+ SML LD+Q P +IPCSKTH
Sbjct: 304 RDFNWLGDIWRSSTPYQCPVNTFKERVLLYFCRSALVGQSMLWLLDQQPPYEIPCSKTHN 483
Query: 515 R*FWEP*GLSNYVEQCRPIPRTFEWCLAEEKLIQEYAKCPPVYSTSMPLALYNFRCQVLM 694
R*FWEP GL+N +E P+PRTFEW LAE+K IQEYAK PPVYST MPLALY+ RCQV M
Sbjct: 484 R*FWEPEGLANNIE*RCPVPRTFEWSLAEKKFIQEYAKSPPVYSTPMPLALYDLRCQVFM 663
Query: 695 GANK 706
GANK
Sbjct: 664 GANK 675
Score = 188 bits (405), Expect = 4e-047
Identities = 93/142 (65%), Positives = 98/142 (69%)
Frame = +1 / +3
Query: 280 LSLSQRLM*PSGLMKLQNEGSQLAWGYQVEWHT*LMPN*HLQRTGAVLFLWLHAYTLIDA 459
L LS+ + PS L +L EG QLAWGY E HT MP+*HLQRTGA LFL L A IDA
Sbjct: 249 LDLSRLMALPSDLSRLLAEGFQLAWGYLEE*HTLSMPS*HLQRTGAALFLSLRACRPIDA 428
Query: 460 EVP**AIP**DPLQQNSLQVILGTLRVVQLR*TMSPYSQNL*MVSCRREAHTRICQMSTS 639
P* A P *DPLQQN QVILGT Q * P S NL*M SCR+E HTRICQ STS
Sbjct: 429 VAP*SATPL*DPLQQNPQQVILGT*GAGQQH*IALPCSPNL*MESCRKEVHTRICQKSTS 608
Query: 640 LQHFHAPRPL*FQVPSTHGCQQ 705
LQH HAPRPL* QVPS HGCQQ
Sbjct: 609 LQHSHAPRPL*SQVPSIHGCQQ 674
Score = 161 bits (346), Expect = 5e-039
Identities = 86/145 (59%), Positives = 95/145 (65%)
Frame = -1 / -1
Query: 705 LLAPMSTWHLKL*RARGMEVL*TGGHLAYSCMSFSSARHHSKVLGIGRHCST*LDNP*GS 526
LLAPM+TWHL+ *RARGM VL*TGG LAYSCM+F SAR HSKV G G+ S L +P GS
Sbjct: 674 LLAPMNTWHLRS*RARGMGVL*TGGLLAYSCMNFFSARLHSKVRGTGQRYSMLLASPSGS 495
Query: 525 QNHXXXXXXXXXXLGDCSSRNLSID*RISVEPQK*NSTRSLKVLIGH*SGVPLHLISPSQ 346
QNH G C SR+ SID S E QK*+STRSLKVL GH* GV L ISPSQ
Sbjct: 494 QNHLLWVLLQGIS*GGC*SRSHSIDWPTSAERQK*SSTRSLKVLTGH**GVLLLQISPSQ 315
Query: 345 LRSLVL*LHQARRLHQPLRKAQIIL 271
L+SL Q RR RK Q I+
Sbjct: 314 LKSLGQEPRQVRRQRHQPRKVQTII 240
Score = 24.9 bits (48), Expect(2) = 1e-091
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2 / -3
Query: 116 SVHSFRWDPQSGGVCNP 66
S+ W+P SG CNP
Sbjct: 84 SIDHIGWEPLSGVSCNP 34
>gb|BU995645.1|BU995645 HM10O13r HM Hordeum vulgare subsp. vulgare cDNA clone HM10O13
5-PRIME, mRNA sequence
Length = 617
Score = 289 bits (626), Expect = 1e-077
Identities = 118/125 (94%), Positives = 120/125 (96%)
Frame = -3 / +3
Query: 652 GSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLL 473
GSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVV FAARDLIRGLL
Sbjct: 36 GSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVGFAARDLIRGLL 215
Query: 472 IKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEIPRSVASSSQKATSAA 293
IKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEIPR AS+SQKAT +A
Sbjct: 216 IKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEIPRPGASTSQKATPSA 395
Query: 292 EKGSD 278
EKG D
Sbjct: 396 EKGPD 410
Score = 249 bits (539), Expect = 1e-065
Identities = 110/130 (84%), Positives = 115/130 (88%)
Frame = +3 / -2
Query: 279 SEPFSAADVAFWLDEATERGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC 458
S PFSA VAF L EA RGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL ANRC
Sbjct: 409 SGPFSADGVAF*LVEAPGRGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL*ANRC 230
Query: 459 *GSLMSNPLIRSLAAKLTTGDSGNLKGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQ 638
GSL+SNPL+RSLAAK TTGDSGNL+G PTTLN+VALFPEPLNGVLPKRSSYKNMP VHQ
Sbjct: 229 CGSLISNPLMRSLAAKPTTGDSGNLRGWPTTLNSVALFPEPLNGVLPKRSSYKNMPKVHQ 50
Query: 639 STALPCPSPF 668
STALP + F
Sbjct: 49 STALPPRAEF 20
Score = 177 bits (381), Expect = 8e-044
Identities = 73/105 (69%), Positives = 81/105 (77%)
Frame = +2 / -1
Query: 335 RDLNWLGDIRWSGTPD*CPINTFKERVLFYFCGSTLIR*SMLRFLDEQSPNKIPCSKTHY 514
RD NWLGDI S TP CP+NTFKERVL YFC S L+ SML LD+Q P +IPCSKTH
Sbjct: 353 RDFNWLGDIWRSSTPYQCPVNTFKERVLLYFCRSALVGQSMLWLLDQQPPYEIPCSKTHN 174
Query: 515 R*FWEP*GLSNYVEQCRPIPRTFEWCLAEEKLIQEYAKCPPVYST 649
R*FWEP GL+N +E P+PRTFEW LAE+K IQEYAK PPVYST
Sbjct: 173 R*FWEPEGLANNIE*RCPVPRTFEWSLAEKKFIQEYAKSPPVYST 39
Score = 177 bits (381), Expect = 8e-044
Identities = 78/125 (62%), Positives = 92/125 (73%)
Frame = -2 / +2
Query: 653 WKCCRLVDIWHILV*ASLRQDTIQRFWE*GDIVQRSWTTLKVPRITCSEFCCKGSY*GIA 474
W+CCRLVD WHILV* S RQD+IQRF E G+ +Q W +VPRITC FCCKGS+ G+A
Sbjct: 35 WECCRLVDFWHILV*TSFRQDSIQRFGEQGNAIQCCWPAPQVPRITCCGFCCKGSHKGVA 214
Query: 473 HQGTSASISV*AWSHRNKTAPVL*RC*LGINQVCHST*YPQAS*DPSFCSFIKPEGYISR 294
QG +ASI + A S RNK APVL*RC*LGI++VC+S+ YPQAS*+PS S K EG
Sbjct: 215 DQGATASIGLQARSDRNKAAPVL*RC*LGIDKVCYSSRYPQAS*NPSARSLDKSEGNAIS 394
Query: 293 *ERLR 279
ER R
Sbjct: 395 RERSR 409
Score = 152 bits (327), Expect = 2e-036
Identities = 78/125 (62%), Positives = 83/125 (66%)
Frame = +1 / -3
Query: 280 LSLSQRLM*PSGLMKLQNEGSQLAWGYQVEWHT*LMPN*HLQRTGAVLFLWLHAYTLIDA 459
L LS+ + PS L +L EG QLAWGY E HT MP+*HLQRTGA LFL L A IDA
Sbjct: 408 LDLSRLMALPSDLSRLLAEGFQLAWGYLEE*HTLSMPS*HLQRTGAALFLSLRACRPIDA 229
Query: 460 EVP**AIP**DPLQQNSLQVILGTLRVVQLR*TMSPYSQNL*MVSCRREAHTRICQMSTS 639
P* A P *DPLQQN QVILGT Q * P S NL*M SCR+E HTRICQ STS
Sbjct: 228 VAP*SATPL*DPLQQNPQQVILGT*GAGQQH*IALPCSPNL*MESCRKEVHTRICQKSTS 49
Query: 640 LQHFH 654
LQH H
Sbjct: 48 LQHSH 34
Score = 126 bits (269), Expect = 2e-028
Identities = 71/126 (56%), Positives = 78/126 (61%)
Frame = -1 / +1
Query: 648 VL*TGGHLAYSCMSFSSARHHSKVLGIGRHCST*LDNP*GSQNHXXXXXXXXXXLGDCSS 469
VL*TGG LAYSCM+F SAR HSKV G G+ S L +P GSQNH G C S
Sbjct: 40 VL*TGGLLAYSCMNFFSARLHSKVRGTGQRYSMLLASPSGSQNHLLWVLLQGIS*GGC*S 219
Query: 468 RNLSID*RISVEPQK*NSTRSLKVLIGH*SGVPLHLISPSQLRSLVL*LHQARRLHQPLR 289
R+ SID S E QK*+STRSLKVL GH* GV L ISPSQL+SL Q RR R
Sbjct: 220 RSHSIDWPTSAERQK*SSTRSLKVLTGH**GVLLLQISPSQLKSLGQEPRQVRRQRHQPR 399
Query: 288 KAQIIL 271
K Q I+
Sbjct: 400 KVQTII 417
>gb|BQ465179.1|BQ465179 HU02N24r HU Hordeum vulgare subsp. vulgare cDNA clone HU02N24
5-PRIME, mRNA sequence
Length = 624
Score = 255 bits (552), Expect(2) = 1e-069
Identities = 98/133 (73%), Positives = 115/133 (86%)
Frame = -3 / +2
Query: 751 LPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSG 572
LP+LV EPTDARS SFVGTHEYLAPEII+G+GHGS+VDWWT GIFLYELL+GKTPF+G G
Sbjct: 206 LPQLVVEPTDARSNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPG 385
Query: 571 NRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVN 392
N TL NVV Q L+FP+SP VS+ ARDLIRGLL+KEP+HRL ++GA EIK+HPFF+G+N
Sbjct: 386 NDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLN 565
Query: 391 WALIRCATPPDIP 353
WALIR PP+ P
Sbjct: 566 WALIRWTAPPETP 604
Score = 155 bits (334), Expect = 2e-037
Identities = 69/121 (57%), Positives = 79/121 (65%)
Frame = +3 / -1
Query: 354 GISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC*GSLMSNPLIRSLAAKLTTGDSGNL 533
G+SGG I AQ P K GC IS AP L +RC GS SNPLIRS A LT G SGN
Sbjct: 603 GVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGNF 424
Query: 534 KGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQSTALPCPSPFIISGAKYSWVPTKDI 713
C TT +V+ P PLNGVLP +S + +P VHQST LP PSP +ISGA+YSWVPT +
Sbjct: 423 SPCETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNEF 244
Query: 714 D 716
D
Sbjct: 243 D 241
Score = 28.6 bits (56), Expect(2) = 1e-069
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3 / +2
Query: 901 CVQPVCIEPACMQPSCVT 848
C+ P+CI+P+ SC T
Sbjct: 89 CIDPLCIQPSWANSSCFT 142
>gb|BQ470446.1|BQ470446 HX03A05r HX Hordeum vulgare subsp. vulgare cDNA clone HX03A05
5-PRIME, mRNA sequence
Length = 666
Score = 259 bits (559), Expect(2) = 6e-069
Identities = 99/136 (72%), Positives = 117/136 (86%)
Frame = -3 / +2
Query: 751 LPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSG 572
LP+LV EPTDARS SFVGTHEYLAPEII+G+GHGS+VDWWT GIFLYELL+GKTPF+G G
Sbjct: 104 LPQLVVEPTDARSNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPG 283
Query: 571 NRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVN 392
N TL NVV Q L+FP+SP VS+ ARDLIRGLL+KEP+HRL ++GA EIK+HPFF+G+N
Sbjct: 284 NDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLN 463
Query: 391 WALIRCATPPDIPKPV 344
WALIR PP+ PK +
Sbjct: 464 WALIRWTAPPETPKSI 511
Score = 155 bits (334), Expect = 2e-037
Identities = 69/121 (57%), Positives = 79/121 (65%)
Frame = +3 / -1
Query: 354 GISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC*GSLMSNPLIRSLAAKLTTGDSGNL 533
G+SGG I AQ P K GC IS AP L +RC GS SNPLIRS A LT G SGN
Sbjct: 501 GVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGNF 322
Query: 534 KGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQSTALPCPSPFIISGAKYSWVPTKDI 713
C TT +V+ P PLNGVLP +S + +P VHQST LP PSP +ISGA+YSWVPT +
Sbjct: 321 SPCETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNEF 142
Query: 714 D 716
D
Sbjct: 141 D 139
Score = 22.6 bits (43), Expect(2) = 6e-069
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3 / +2
Query: 349 PVEIPRSVASSSQKATSAAEKGSDYLELEF 260
P E P+S+ +S + A K + LEF
Sbjct: 488 PPETPKSIVEASTLTVAVARKKKEGKCLEF 577
>gb|BQ470603.1|BQ470603 HX03H14r HX Hordeum vulgare subsp. vulgare cDNA clone HX03H14
5-PRIME, mRNA sequence
Length = 629
Score = 259 bits (559), Expect(2) = 6e-069
Identities = 99/136 (72%), Positives = 117/136 (86%)
Frame = -3 / +2
Query: 751 LPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSG 572
LP+LV EPTDARS SFVGTHEYLAPEII+G+GHGS+VDWWT GIFLYELL+GKTPF+G G
Sbjct: 104 LPQLVVEPTDARSNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPG 283
Query: 571 NRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVN 392
N TL NVV Q L+FP+SP VS+ ARDLIRGLL+KEP+HRL ++GA EIK+HPFF+G+N
Sbjct: 284 NDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLN 463
Query: 391 WALIRCATPPDIPKPV 344
WALIR PP+ PK +
Sbjct: 464 WALIRWTAPPETPKSI 511
Score = 155 bits (334), Expect(2) = 6e-039
Identities = 69/121 (57%), Positives = 79/121 (65%)
Frame = +3 / -3
Query: 354 GISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC*GSLMSNPLIRSLAAKLTTGDSGNL 533
G+SGG I AQ P K GC IS AP L +RC GS SNPLIRS A LT G SGN
Sbjct: 501 GVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGNF 322
Query: 534 KGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQSTALPCPSPFIISGAKYSWVPTKDI 713
C TT +V+ P PLNGVLP +S + +P VHQST LP PSP +ISGA+YSWVPT +
Sbjct: 321 SPCETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNEF 142
Query: 714 D 716
D
Sbjct: 141 D 139
Score = 25.4 bits (49), Expect(2) = 6e-039
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1 / -1
Query: 688 THGCQQKT*TLHLSALQQAQEVV 756
THG QQ T S QQA EV+
Sbjct: 167 THGSQQMNLTSRQSVRQQAAEVM 99
Score = 22.6 bits (43), Expect(2) = 6e-069
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3 / +2
Query: 349 PVEIPRSVASSSQKATSAAEKGSDYLELEF 260
P E P+S+ +S + A K + LEF
Sbjct: 488 PPETPKSIVEASTLTVAVARKKKEGKCLEF 577
>gb|CA007256.1|CA007256 HU07F09r HU Hordeum vulgare subsp. vulgare cDNA clone HU07F09
5-PRIME, mRNA sequence
Length = 592
Score = 259 bits (559), Expect(2) = 6e-069
Identities = 99/136 (72%), Positives = 117/136 (86%)
Frame = -3 / +2
Query: 751 LPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSG 572
LP+LV EPTDARS SFVGTHEYLAPEII+G+GHGS+VDWWT GIFLYELL+GKTPF+G G
Sbjct: 41 LPQLVVEPTDARSNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPG 220
Query: 571 NRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVN 392
N TL NVV Q L+FP+SP VS+ ARDLIRGLL+KEP+HRL ++GA EIK+HPFF+G+N
Sbjct: 221 NDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLN 400
Query: 391 WALIRCATPPDIPKPV 344
WALIR PP+ PK +
Sbjct: 401 WALIRWTAPPETPKSI 448
Score = 155 bits (334), Expect = 2e-037
Identities = 69/121 (57%), Positives = 79/121 (65%)
Frame = +3 / -2
Query: 354 GISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC*GSLMSNPLIRSLAAKLTTGDSGNL 533
G+SGG I AQ P K GC IS AP L +RC GS SNPLIRS A LT G SGN
Sbjct: 438 GVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGNF 259
Query: 534 KGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQSTALPCPSPFIISGAKYSWVPTKDI 713
C TT +V+ P PLNGVLP +S + +P VHQST LP PSP +ISGA+YSWVPT +
Sbjct: 258 SPCETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNEF 79
Query: 714 D 716
D
Sbjct: 78 D 76
Score = 22.6 bits (43), Expect(2) = 6e-069
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3 / +2
Query: 349 PVEIPRSVASSSQKATSAAEKGSDYLELEF 260
P E P+S+ +S + A K + LEF
Sbjct: 425 PPETPKSIVEASTLTVAVARKKKEGKCLEF 514
>gb|BF254638.2|BF254638 HVSMEf0004J12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004J12f, mRNA sequence
Length = 816
Score = 191 bits (412), Expect(2) = 6e-068
Identities = 82/115 (71%), Positives = 90/115 (78%)
Frame = -3 / +1
Query: 772 LANQVRPLPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGK 593
+A QVRPLPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAV+WWT GIFL EL+ G+
Sbjct: 154 MATQVRPLPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVNWWTLGIFLDELVLGE 333
Query: 592 TPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGAT 428
T FKGSGNRA L NV GQPLRFPE P AARDLI+ + + P + AT
Sbjct: 334 TAFKGSGNRAALLNVGGQPLRFPE*PEEGRAARDLIKRVQVSVPPRCRTCRHTAT 498
Score = 164 bits (353), Expect(2) = 3e-058
Identities = 67/95 (70%), Positives = 73/95 (76%)
Frame = +2 / -1
Query: 491 IPCSKTHYR*FWEP*GLSNYVEQCRPIPRTFEWCLAEEKLIQEYAKCPPVYSTSMPLALY 670
IPCS T R FWEP*GL+ + P+PRTFE LA+ K IQEYA PPVYST MPLALY
Sbjct: 435 IPCSSTFLRLFWEP*GLATNI**RCPVPRTFECSLAQNKFIQEYA*SPPVYSTPMPLALY 256
Query: 671 NFRCQVLMGANKRHRPCICRLCNKLRKWSDLICQV 775
+ RCQV MGANKRHRPCIC LCNKLR+WSDL C V
Sbjct: 255 DLRCQVFMGANKRHRPCICGLCNKLREWSDLGCHV 151
Score = 143 bits (306), Expect(2) = 2e-047
Identities = 60/85 (70%), Positives = 66/85 (77%)
Frame = +3 / -2
Query: 462 GSLMSNPLIRSLAAKLTTGDSGNLKGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQS 641
G+L IRSLAA ++G SGNL+G P T N+ ALFPEPLN V PK SS KNMP VHQ
Sbjct: 464 GTLTCTLFIRSLAALPSSGYSGNLRGWPPTFNSAALFPEPLNAVSPKTSSSKNMPKVHQF 285
Query: 642 TALPCPSPFIISGAKYSWVPTKDID 716
TALPCPSPF+ISGAKYSWVPT DID
Sbjct: 284 TALPCPSPFMISGAKYSWVPTNDID 210
Score = 138 bits (297), Expect(2) = 1e-042
Identities = 57/91 (62%), Positives = 65/91 (71%)
Frame = -2 / +3
Query: 761 GQTTS*ACCRADRCKVYVFCWHP*VLGT*NYKGRGAWKCCRLVDIWHILV*ASLRQDTIQ 582
GQTT *ACCRA RCKVYV CWHP*+LGT*++KGRGAW+CC+LVD HIL * +D IQ
Sbjct: 165 GQTTP*ACCRAHRCKVYVVCWHP*ILGT*DHKGRGAWECCKLVDFRHILG*TCFGRDCIQ 344
Query: 581 RFWE*GDIVQRSWTTLKVPRITCSEFCCKGS 489
RF E G ++ W KVPRI CKGS
Sbjct: 345 RFGEQGSAIKCWWPAPKVPRIA*GR*SCKGS 437
Score = 134 bits (287), Expect(2) = 9e-037
Identities = 63/94 (67%), Positives = 72/94 (76%)
Frame = -1 / +2
Query: 801 RKKIKRQRQTWQIRSDHFLSLLQSRQMQGLCLLLAPMSTWHLKL*RARGMEVL*TGGHLA 622
R++ +RQRQTWQ RSDH LSLLQS QMQGLC LLAPM+TWHL+ *RARGM VL*TGG A
Sbjct: 125 RRRKRRQRQTWQPRSDHSLSLLQSPQMQGLCRLLAPMNTWHLRS*RARGMGVL*TGGL*A 304
Query: 621 YSCMSFSSARHHSKVLGIGRHCST*LDNP*GSQN 520
YS M+ AR HSKV G G+ + +P*GSQN
Sbjct: 305 YSWMNLFWARLHSKVRGTGQRY*MLVASP*GSQN 406
Score = 117 bits (251), Expect(2) = 2e-036
Identities = 59/91 (64%), Positives = 61/91 (67%)
Frame = +1 / -3
Query: 490 DPLQQNSLQVILGTLRVVQLR*TMSPYSQNL*MVSCRREAHTRICQMSTSLQHFHAPRPL 669
DPLQ Q ILGTL P S NL*M S ++ H RIC STSLQH HAPRPL
Sbjct: 436 DPLQLYLPQAILGTLGAGHQHLIALPCSPNL*MQSRPKQVHPRICLKSTSLQHSHAPRPL 257
Query: 670 *FQVPSTHGCQQKT*TLHLSALQQAQEVV*P 762
* QVPS HGCQQ T*TLHL ALQQAQ VV*P
Sbjct: 256 *SQVPSIHGCQQTT*TLHLWALQQAQGVV*P 164
Score = 86.8 bits (183), Expect(2) = 6e-068
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 922 QKGNPAYCVQPVCIEPACMQPSCVTTTTCFSPRFF 818
QKG AYCVQPVCIEPAC+QP+CVTTTTCFSPRFF
Sbjct: 1 QKGTQAYCVQPVCIEPACIQPACVTTTTCFSPRFF 105
Score = 81.3 bits (171), Expect(2) = 3e-058
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +3 / -2
Query: 807 DLEEKKRGEKHVVVVTQEGCIQAGSMHTGCTQ*AGLPF 920
DLEEKKRGEKHVVVVTQ G IQAGSMHTGCTQ*A +PF
Sbjct: 116 DLEEKKRGEKHVVVVTQAGWIQAGSMHTGCTQ*AWVPF 3
Score = 66.6 bits (139), Expect(2) = 2e-047
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +1 / -3
Query: 811 WKRKSEERSMWLS*HKKAAYRQAQCTQAAHSKLGCPF 921
W+RKSEERSM LS*HK+A YR A+CT+ H+KLG PF
Sbjct: 112 WRRKSEERSM*LS*HKQAGYRLARCTRVVHNKLGFPF 2
Score = 55.1 bits (114), Expect(2) = 2e-036
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +2 / -1
Query: 818 EKARREACGCRDTRRLHTGRLNAHRLHTVSWVALL 922
EKARREAC CR+T RL TG L+AH L+T+S +LL
Sbjct: 105 EKARREACSCRNTSRLDTGWLDAHGLYTISLGSLL 1
Score = 54.7 bits (113), Expect(2) = 1e-042
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = -1 / +2
Query: 921 KRATQLTVCSLCALSLPVCSLLVSRQPHASLLAFSLPNPRRKKIKRQRQ 775
KR +L V + CA S PV SLLV RQ HASLLAFS P+ R ++ KR+++
Sbjct: 2 KREPKLIVYNPCASSQPVSSLLVLRQLHASLLAFSPPSLRGRRRKRRQR 148
Score = 39.6 bits (80), Expect(2) = 9e-037
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -2 / +3
Query: 920 KGQPSXXXXXXXXXXXXXXAFLCHDNHMLLSSLFLFQI 807
KG PS A LC+DN+MLLSSLFL Q+
Sbjct: 3 KGNPSLLCTTRVHRASLYPACLCYDNYMLLSSLFLLQV 116
>gb|CB881798.1|CB881798 HM10O13w HM Hordeum vulgare subsp. vulgare cDNA clone HM10O13
3-PRIME, mRNA sequence
Length = 589
Score = 237 bits (512), Expect(2) = 2e-062
Identities = 98/105 (93%), Positives = 100/105 (95%)
Frame = -3 / -2
Query: 592 TPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQH 413
TPFKGSGNRATLFNVVGQPLRFPESPVV FAARDLIRGLLIKEPQHRLAYKRGATEIKQH
Sbjct: 588 TPFKGSGNRATLFNVVGQPLRFPESPVVGFAARDLIRGLLIKEPQHRLAYKRGATEIKQH 409
Query: 412 PFFEGVNWALIRCATPPDIPKPVEIPRSVASSSQKATSAAEKGSD 278
PFFEGVNWALIRCATPPDIPKPVEIPR AS+SQKAT +AEKG D
Sbjct: 408 PFFEGVNWALIRCATPPDIPKPVEIPRPGASTSQKATPSAEKGPD 274
Score = 203 bits (438), Expect = 1e-051
Identities = 90/105 (85%), Positives = 94/105 (89%)
Frame = +3 / +2
Query: 279 SEPFSAADVAFWLDEATERGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC 458
S PFSA VAF L EA RGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL ANRC
Sbjct: 275 SGPFSADGVAF*LVEAPGRGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL*ANRC 454
Query: 459 *GSLMSNPLIRSLAAKLTTGDSGNLKGCPTTLNNVALFPEPLNGV 593
GSL+SNPL+RSLAAK TTGDSGNL+G PTTLN+VALFPEPLNGV
Sbjct: 455 CGSLISNPLMRSLAAKPTTGDSGNLRGWPTTLNSVALFPEPLNGV 589
Score = 140 bits (300), Expect(2) = 1e-032
Identities = 57/85 (67%), Positives = 64/85 (75%)
Frame = +2 / +1
Query: 335 RDLNWLGDIRWSGTPD*CPINTFKERVLFYFCGSTLIR*SMLRFLDEQSPNKIPCSKTHY 514
RD NWLGDI S TP CP+NTFKERVL YFC S L+ SML LD+Q P +IPCSKTH
Sbjct: 331 RDFNWLGDIWRSSTPYQCPVNTFKERVLLYFCRSALVGQSMLWLLDQQPPYEIPCSKTHN 510
Query: 515 R*FWEP*GLSNYVEQCRPIPRTFEW 589
R*FWEP GL+N +E P+PRTFEW
Sbjct: 511 R*FWEPEGLANNIE*RCPVPRTFEW 585
Score = 133 bits (286), Expect = 1e-030
Identities = 62/105 (59%), Positives = 75/105 (71%)
Frame = -2 / -1
Query: 593 DTIQRFWE*GDIVQRSWTTLKVPRITCSEFCCKGSY*GIAHQGTSASISV*AWSHRNKTA 414
D+IQRF E G+ +Q W +VPRITC FCCKGS+ G+A QG +ASI + A S RNK A
Sbjct: 589 DSIQRFGEQGNAIQCCWPAPQVPRITCCGFCCKGSHKGVADQGATASIGLQARSDRNKAA 410
Query: 413 PVL*RC*LGINQVCHST*YPQAS*DPSFCSFIKPEGYISR*ERLR 279
PVL*RC*LGI++VC+S+ YPQAS*+PS S K EG ER R
Sbjct: 409 PVL*RC*LGIDKVCYSSRYPQAS*NPSARSLDKSEGNAISRERSR 275
Score = 109 bits (233), Expect = 2e-023
Identities = 61/103 (59%), Positives = 65/103 (63%)
Frame = +1 / +3
Query: 280 LSLSQRLM*PSGLMKLQNEGSQLAWGYQVEWHT*LMPN*HLQRTGAVLFLWLHAYTLIDA 459
L LS+ + PS L +L EG QLAWGY E HT MP+*HLQRTGA LFL L A IDA
Sbjct: 276 LDLSRLMALPSDLSRLLAEGFQLAWGYLEE*HTLSMPS*HLQRTGAALFLSLRACRPIDA 455
Query: 460 EVP**AIP**DPLQQNSLQVILGTLRVVQLR*TMSPYSQNL*M 588
P* A P *DPLQQN QVILGT Q * P S NL*M
Sbjct: 456 VAP*SATPL*DPLQQNPQQVILGT*GAGQQH*IALPCSPNL*M 584
Score = 24.9 bits (48), Expect(2) = 2e-062
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2 / -2
Query: 116 SVHSFRWDPQSGGVCNP 66
S+ W+P SG CNP
Sbjct: 111 SIDHIGWEPLSGVSCNP 61
Score = 22.1 bits (42), Expect(2) = 1e-032
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1 / +2
Query: 61 NKGLQTPPD*GSH 99
++GLQ PD GSH
Sbjct: 56 DEGLQLTPDRGSH 94
>gb|CB874708.1|CB874708 HX06B10w HX Hordeum vulgare subsp. vulgare cDNA clone HX06B10
3-PRIME, mRNA sequence
Length = 585
Score = 238 bits (514), Expect = 4e-062
Identities = 94/119 (78%), Positives = 103/119 (86%)
Frame = -3 / -2
Query: 649 SAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLI 470
SAVDWWTFGIFLYELLFG TPFKGSGNRATLFNV+GQPLRFPE PVVSF+ARDLIRGLL+
Sbjct: 584 SAVDWWTFGIFLYELLFGXTPFKGSGNRATLFNVIGQPLRFPEYPVVSFSARDLIRGLLV 405
Query: 469 KEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEIPRSVASSSQKATSAA 293
KEPQ RL KRGATEIKQHPFFEGVNWALIRCA+PP++PKPV+I R + A+
Sbjct: 404 KEPQQRLGCKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVDIERQTTKLPVSTSEAS 228
Score = 180 bits (387), Expect = 1e-044
Identities = 78/104 (75%), Positives = 82/104 (78%)
Frame = +3 / +1
Query: 339 ISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC*GSLMSNPLIRSLAAKLTTG 518
ISTG G SGG+A INAQ TPSKNGCCFISVAPRL NRC GSL S PLI+SLA KLTTG
Sbjct: 274 ISTGFGTSGGLAQRINAQFTPSKNGCCFISVAPRLQPNRCWGSLTSRPLIKSLAEKLTTG 453
Query: 519 DSGNLKGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQSTAL 650
SG G P TLN+VA PEPL GVLP RSSYKN+P VHQSTAL
Sbjct: 454 YSGKRNG*PMTLNSVARLPEPLKGVLPNRSSYKNIPKVHQSTAL 585
>gb|BG415060.1|BG415060 HVSMEk0004P24f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004P24f, mRNA sequence
Length = 632
Score = 222 bits (479), Expect = 2e-057
Identities = 92/100 (92%), Positives = 94/100 (94%)
Frame = -3 / +3
Query: 577 SGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEG 398
SGNRATLFNVVGQPLRFPESPVV FAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEG
Sbjct: 3 SGNRATLFNVVGQPLRFPESPVVGFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEG 182
Query: 397 VNWALIRCATPPDIPKPVEIPRSVASSSQKATSAAEKGSD 278
VNWALIRCATPPDIPKPVEIPR A +SQKAT +AEKG D
Sbjct: 183 VNWALIRCATPPDIPKPVEIPRPGAXTSQKATPSAEKGPD 302
Score = 188 bits (405), Expect = 4e-047
Identities = 84/100 (84%), Positives = 88/100 (88%)
Frame = +3 / -2
Query: 279 SEPFSAADVAFWLDEATERGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC 458
S PFSA VAF L A RGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL ANRC
Sbjct: 301 SGPFSADGVAF*LVXAPGRGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL*ANRC 122
Query: 459 *GSLMSNPLIRSLAAKLTTGDSGNLKGCPTTLNNVALFPE 578
GSL+SNPL+RSLAAK TTGDSGNL+G PTTLN+VALFPE
Sbjct: 121 CGSLISNPLMRSLAAKPTTGDSGNLRGWPTTLNSVALFPE 2
Score = 127 bits (273), Expect = 6e-029
Identities = 53/81 (65%), Positives = 60/81 (74%)
Frame = +2 / -1
Query: 335 RDLNWLGDIRWSGTPD*CPINTFKERVLFYFCGSTLIR*SMLRFLDEQSPNKIPCSKTHY 514
RD NWLGDI S TP CP+NTFKERVL YFC S L+ SML LD+Q P +IPCSKTH
Sbjct: 245 RDFNWLGDIWRSSTPYQCPVNTFKERVLLYFCRSALVGQSMLWLLDQQPPYEIPCSKTHN 66
Query: 515 R*FWEP*GLSNYVEQCRPIPR 577
R*FWEP GL+N +E P+PR
Sbjct: 65 R*FWEPEGLANNIE*RCPVPR 3
Score = 122 bits (262), Expect(2) = 6e-029
Identities = 55/91 (60%), Positives = 67/91 (73%)
Frame = -2 / +2
Query: 578 FWE*GDIVQRSWTTLKVPRITCSEFCCKGSY*GIAHQGTSASISV*AWSHRNKTAPVL*R 399
F E G+ +Q W +VPRITC FCCKGS+ G+A QG +ASI + A S RNK APVL*R
Sbjct: 2 FGEQGNAIQCCWPAPQVPRITCCGFCCKGSHKGVADQGATASIGLQARSDRNKAAPVL*R 181
Query: 398 C*LGINQVCHST*YPQAS*DPSFCSFIKPEG 306
C*LGI++VC+S+ YPQAS*+PS S K EG
Sbjct: 182 C*LGIDKVCYSSRYPQAS*NPSARSLDKSEG 274
Score = 102 bits (217), Expect = 3e-021
Identities = 57/100 (57%), Positives = 61/100 (61%)
Frame = +1 / -3
Query: 280 LSLSQRLM*PSGLMKLQNEGSQLAWGYQVEWHT*LMPN*HLQRTGAVLFLWLHAYTLIDA 459
L L + + PS L +L EG QLAWGY E HT MP+*HLQRTGA LFL L A IDA
Sbjct: 300 LDLFRLMALPSDLSRLLAEGFQLAWGYLEE*HTLSMPS*HLQRTGAALFLSLRACRPIDA 121
Query: 460 EVP**AIP**DPLQQNSLQVILGTLRVVQLR*TMSPYSQN 579
P* A P *DPLQQN QVILGT Q * P S N
Sbjct: 120 VAP*SATPL*DPLQQNPQQVILGT*GAGQQH*IALPCSPN 1
Score = 24.9 bits (48), Expect(2) = 6e-029
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1 / +1
Query: 312 RRLHQPLRKAQIILNWSFFSG 250
R+ HQP + IILN FSG
Sbjct: 271 RQRHQPKKVQTIILNLISFSG 333
>gb|BF622824.2|BF622824 HVSMEa0009C21f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009C21f, mRNA sequence
Length = 721
Score = 179 bits (385), Expect = 2e-044
Identities = 72/102 (70%), Positives = 82/102 (80%)
Frame = -3 / +3
Query: 592 TPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQH 413
TPFKGSGNRATLFNVVGQ L+FPESP S+A RDLIRGLL KEPQ RL KRGATEIKQH
Sbjct: 3 TPFKGSGNRATLFNVVGQQLKFPESPSTSYAGRDLIRGLLAKEPQQRLGVKRGATEIKQH 182
Query: 412 PFFEGVNWALIRCATPPDIPKPVEIPRSVASSSQKATSAAEK 287
PFFEGVNWALIRC+TPP++P+PV+ V +A ++ K
Sbjct: 183 PFFEGVNWALIRCSTPPEVPRPVKADLPVKYGVSEAVASTNK 308
Score = 128 bits (275), Expect = 3e-029
Identities = 57/89 (64%), Positives = 61/89 (68%)
Frame = +3 / -1
Query: 327 TERGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC*GSLMSNPLIRSLAAK 506
T R TGLG SGGV H + AQ TPSKNGCC ISVAP RC GSL +PL+RSL A
Sbjct: 268 TGRSALTGLGTSGGVLHRMRAQFTPSKNGCCLISVAPLFTPRRCCGSLARSPLMRSLPA* 89
Query: 507 LTTGDSGNLKGCPTTLNNVALFPEPLNGV 593
L GDSGN PTTLNNVA P+PLNGV
Sbjct: 88 LVDGDSGNFSC*PTTLNNVARLPDPLNGV 2
>gb|BJ544669.1|BJ544669 BJ544669 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34b18 5', mRNA sequence
Length = 639
Score = 176 bits (379), Expect = 2e-043
Identities = 64/126 (50%), Positives = 89/126 (70%)
Frame = -3 / +3
Query: 715 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQP 536
S SFVGT EY+APE+I G GH SA+DWW GI LYE+L+G+TPF+G + T +N++ +
Sbjct: 27 SNSFVGTEEYIAPEVITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKD 206
Query: 535 LRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDI 356
L FP S VS A+ LI GLL ++P R+ GA +IK+HPFFE + W LIRC +PP++
Sbjct: 207 LTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPEL 386
Query: 355 PKPVEI 338
P+++
Sbjct: 387 DVPLKL 404
Score = 102 bits (218), Expect = 2e-021
Identities = 54/123 (43%), Positives = 65/123 (52%)
Frame = +3 / -3
Query: 348 GLGISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC*GSLMSNPLIRSLAAKLTTGDSG 527
G SGG+ I+ Q SKNGC IS AP R GSL S+P I A++LT G
Sbjct: 394 GTSSSGGLMQRISGQ*MSSKNGCSLISFAPVFEPMREEGSL*SSPWISCFASRLTGMLLG 215
Query: 528 NLKGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQSTALPCPSPFIISGAKYSWVPTK 707
N++ L NV P GV P SY +P HQS AL CP+P + SGA YS VPT
Sbjct: 214 NVRSLCRML*NVFFLFFPRKGVRPYSISYNRIPRAHQSMALVCPAPVMTSGAMYSSVPTN 35
Query: 708 DID 716
+ D
Sbjct: 34 EFD 26
>gb|BE421430.1|BE421430 HWM009.C03 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.C03, mRNA sequence
Length = 832
Score = 170 bits (365), Expect = 1e-041
Identities = 67/124 (54%), Positives = 85/124 (68%)
Frame = -3 / +2
Query: 715 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQP 536
S SFVGT EY+APEII G GH SAVDWW GI LYE+L+G TPF+G + T N++ +
Sbjct: 200 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 379
Query: 535 LRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDI 356
+RFP S VS AR LI LL ++P +R+ G+ EIKQHPFF G+NWAL+R PP +
Sbjct: 380 IRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINWALVRGTAPPKL 559
Query: 355 PKPV 344
P+
Sbjct: 560 DAPL 571
Score = 84.9 bits (179), Expect(2) = 4e-022
Identities = 43/85 (50%), Positives = 51/85 (60%)
Frame = +3 / -2
Query: 462 GSLMSNPLIRSLAAKLTTGDSGNLKGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQS 641
GSL SN I LA +LT +GNL L NV PL GV P SY+ +P+ HQS
Sbjct: 453 GSLCSNL*ISCLAGRLTDILAGNLMSLCRMLANVLCLVLPLKGV*PYSISYRRIPSAHQS 274
Query: 642 TALPCPSPFIISGAKYSWVPTKDID 716
TAL P+P IISGA YS VPT ++D
Sbjct: 273 TALVWPAPVIISGAMYSSVPTNELD 199
Score = 40.0 bits (81), Expect(2) = 4e-022
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3 / -2
Query: 342 STGLGISGGVAHLINAQLTPSKNGCCFISVAP 437
++G GG AQL P KNGCCFIS P
Sbjct: 573 NSGASSFGGAVPRTRAQLMPRKNGCCFISFDP 478
>gb|AV926878.1|AV926878 AV926878 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24k23 5', mRNA sequence
Length = 703
Score = 170 bits (365), Expect = 1e-041
Identities = 67/124 (54%), Positives = 85/124 (68%)
Frame = -3 / +1
Query: 715 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQP 536
S SFVGT EY+APEII G GH SAVDWW GI LYE+L+G TPF+G + T N++ +
Sbjct: 139 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 318
Query: 535 LRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDI 356
+RFP S VS AR LI LL ++P +R+ G+ EIKQHPFF G+NWAL+R PP +
Sbjct: 319 IRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINWALVRGTAPPKL 498
Query: 355 PKPV 344
P+
Sbjct: 499 DAPL 510
Score = 84.9 bits (179), Expect(2) = 4e-022
Identities = 43/85 (50%), Positives = 51/85 (60%)
Frame = +3 / -3
Query: 462 GSLMSNPLIRSLAAKLTTGDSGNLKGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQS 641
GSL SN I LA +LT +GNL L NV PL GV P SY+ +P+ HQS
Sbjct: 392 GSLCSNL*ISCLAGRLTDILAGNLMSLCRMLANVLCLVLPLKGV*PYSISYRRIPSAHQS 213
Query: 642 TALPCPSPFIISGAKYSWVPTKDID 716
TAL P+P IISGA YS VPT ++D
Sbjct: 212 TALVWPAPVIISGAMYSSVPTNELD 138
Score = 40.0 bits (81), Expect(2) = 4e-022
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3 / -3
Query: 342 STGLGISGGVAHLINAQLTPSKNGCCFISVAP 437
++G GG AQL P KNGCCFIS P
Sbjct: 512 NSGASSFGGAVPRTRAQLMPRKNGCCFISFDP 417
>gb|BU997959.1|BU997959 HI09I16r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I16
5-PRIME, mRNA sequence
Length = 665
Score = 170 bits (365), Expect = 1e-041
Identities = 67/124 (54%), Positives = 85/124 (68%)
Frame = -3 / +2
Query: 715 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQP 536
S SFVGT EY+APEII G GH SAVDWW GI LYE+L+G TPF+G + T N++ +
Sbjct: 155 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 334
Query: 535 LRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDI 356
+RFP S VS AR LI LL ++P +R+ G+ EIKQHPFF G+NWAL+R PP +
Sbjct: 335 IRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINWALVRGTAPPKL 514
Query: 355 PKPV 344
P+
Sbjct: 515 DAPL 526
Score = 84.9 bits (179), Expect(2) = 4e-022
Identities = 43/85 (50%), Positives = 51/85 (60%)
Frame = +3 / -3
Query: 462 GSLMSNPLIRSLAAKLTTGDSGNLKGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQS 641
GSL SN I LA +LT +GNL L NV PL GV P SY+ +P+ HQS
Sbjct: 408 GSLCSNL*ISCLAGRLTDILAGNLMSLCRMLANVLCLVLPLKGV*PYSISYRRIPSAHQS 229
Query: 642 TALPCPSPFIISGAKYSWVPTKDID 716
TAL P+P IISGA YS VPT ++D
Sbjct: 228 TALVWPAPVIISGAMYSSVPTNELD 154
Score = 40.0 bits (81), Expect(2) = 4e-022
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3 / -3
Query: 342 STGLGISGGVAHLINAQLTPSKNGCCFISVAP 437
++G GG AQL P KNGCCFIS P
Sbjct: 528 NSGASSFGGAVPRTRAQLMPRKNGCCFISFDP 433
>gb|CB875785.1|CB875785 HX09F12w HX Hordeum vulgare subsp. vulgare cDNA clone HX09F12
3-PRIME, mRNA sequence
Length = 660
Score = 170 bits (365), Expect = 1e-041
Identities = 65/74 (87%), Positives = 73/74 (98%)
Frame = -3 / -1
Query: 559 LFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALI 380
LFNVVGQPLRFPESP+VSF+ARD+IRGLL+K+PQHRL +KRGATEIKQHPFFEGVNWALI
Sbjct: 660 LFNVVGQPLRFPESPLVSFSARDMIRGLLVKDPQHRLGHKRGATEIKQHPFFEGVNWALI 481
Query: 379 RCATPPDIPKPVEI 338
RCA+PPDIPKPVE+
Sbjct: 480 RCASPPDIPKPVEL 439
Score = 129 bits (276), Expect = 2e-029
Identities = 54/71 (76%), Positives = 61/71 (85%)
Frame = +3 / +2
Query: 342 STGLGISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC*GSLMSNPLIRSLAAKLTTGD 521
STGLG+SGG+AHLI AQ TPSK GCCFISVAPRL+ +RC GSL S+PLI SLA KLT+GD
Sbjct: 443 STGLGMSGGLAHLIRAQFTPSKKGCCFISVAPRLWPSRCCGSLTSSPLIMSLAEKLTSGD 622
Query: 522 SGNLKGCPTTL 554
SGN +G PTTL
Sbjct: 623 SGNRRG*PTTL 655
>gb|AJ462548.1|AJ462548 AJ462548 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081A03F1, mRNA sequence
Length = 360
Score = 168 bits (362), Expect = 3e-041
Identities = 67/91 (73%), Positives = 76/91 (83%)
Frame = -3 / +1
Query: 565 ATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWA 386
ATLFNV+GQPLRFPE PVVSF+ARDLIRGLL+KEPQ RL KRGATEIKQHPFFEGVNWA
Sbjct: 1 ATLFNVIGQPLRFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWA 180
Query: 385 LIRCATPPDIPKPVEIPRSVASSSQKATSAA 293
LIRCA+PP++PKPV+I R + A+
Sbjct: 181 LIRCASPPEVPKPVDIERQTTKLPVSTSEAS 273
Score = 125 bits (268), Expect = 3e-028
Identities = 55/75 (73%), Positives = 58/75 (77%)
Frame = +3 / -2
Query: 339 ISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRLYANRC*GSLMSNPLIRSLAAKLTTG 518
ISTG G SGG+A INAQ TPSKNGCCFISVAPRL NRC GSL S PLI+SLA KLTTG
Sbjct: 227 ISTGFGTSGGLAQRINAQFTPSKNGCCFISVAPRLQPNRCWGSLTSRPLIKSLAEKLTTG 48
Query: 519 DSGNLKGCPTTLNNV 563
SG G P TLN+V
Sbjct: 47 YSGKRNG*PMTLNSV 3
>gb|AV834352.1|AV834352 AV834352 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags15d19, mRNA sequence
Length = 619
Score = 164 bits (353), Expect(2) = 1e-040
Identities = 63/93 (67%), Positives = 77/93 (82%)
Frame = -3 / -2
Query: 622 IFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAY 443
IFLYELL+GKTPF+G GN TL NVV Q L+FP+SP VS+ ARDLIRGLL+KEP+HRL
Sbjct: 618 IFLYELLYGKTPFRGPGNDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGS 439
Query: 442 KRGATEIKQHPFFEGVNWALIRCATPPDIPKPV 344
++GA EIK+HPFF+G+NWALIR PP+ PK +
Sbjct: 438 RKGAAEIKRHPFFQGLNWALIRWTAPPETPKSI 340
Score = 22.6 bits (43), Expect(2) = 1e-040
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3 / -2
Query: 349 PVEIPRSVASSSQKATSAAEKGSDYLELEF 260
P E P+S+ +S + A K + LEF
Sbjct: 363 PPETPKSIVEASTLTVAVARKKKEGKCLEF 274
>gb|BF626879.2|BF626879 HVSMEb0001J09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001J09f, mRNA sequence
Length = 780
Score = 166 bits (357), Expect = 2e-040
Identities = 66/124 (53%), Positives = 84/124 (67%)
Frame = -3 / +1
Query: 715 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQP 536
S SFVGT EY+APEII G GH SAVDWW GI LYE+L+G TPF+G + T N++ +
Sbjct: 199 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 378
Query: 535 LRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDI 356
+RFP S VS AR LI LL ++P +R+ G+ EIKQHPFF G+NWAL+R P +
Sbjct: 379 IRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINWALVRGTAPSKL 558
Query: 355 PKPV 344
P+
Sbjct: 559 DAPL 570
Score = 84.9 bits (179), Expect(2) = 4e-021
Identities = 43/85 (50%), Positives = 51/85 (60%)
Frame = +3 / -2
Query: 462 GSLMSNPLIRSLAAKLTTGDSGNLKGCPTTLNNVALFPEPLNGVLPKRSSYKNMPNVHQS 641
GSL SN I LA +LT +GNL L NV PL GV P SY+ +P+ HQS
Sbjct: 452 GSLCSNL*ISCLAGRLTDILAGNLMSLCRMLANVLCLVLPLKGV*PYSISYRRIPSAHQS 273
Query: 642 TALPCPSPFIISGAKYSWVPTKDID 716
TAL P+P IISGA YS VPT ++D
Sbjct: 272 TALVWPAPVIISGAMYSSVPTNELD 198
Score = 36.3 bits (73), Expect(2) = 4e-021
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3 / -2
Query: 342 STGLGISGGVAHLINAQLTPSKNGCCFISVAP 437
++G G AQL P KNGCCFIS P
Sbjct: 572 NSGASSFEGAVPRTRAQLMPRKNGCCFISFDP 477
>gb|BJ546140.1|BJ546140 BJ546140 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34b18 3', mRNA sequence
Length = 719
Score = 164 bits (352), Expect = 8e-040
Identities = 58/118 (49%), Positives = 83/118 (70%)
Frame = -3 / -3
Query: 691 EYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPV 512
EY+APE+I G GH SA+DWW GI LYE+L+G+TPF+G + T +N++ + L FP S
Sbjct: 717 EYIAPEVITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIP 538
Query: 511 VSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEI 338
VS A+ LI GLL ++P R+ GA +IK+HPFFE + W LIRC +PP++ P+++
Sbjct: 537 VSLEAKQLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 364
>gb|BJ546986.1|BJ546986 BJ546986 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p17 5', mRNA sequence
Length = 624
Score = 150 bits (322), Expect = 1e-035
Identities = 53/112 (47%), Positives = 77/112 (68%)
Frame = -3 / +2
Query: 673 IIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAAR 494
+I G GH SA+DWW GI LYE+L+G+TPF+G + T +N++ + L FP S VS A+
Sbjct: 29 VITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAK 208
Query: 493 DLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEI 338
LI GLL ++P R+ GA +IK+HPFFE + W LIRC +PP++ P+++
Sbjct: 209 QLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 364
>gb|BJ547950.1|BJ547950 BJ547950 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f06 3', mRNA sequence
Length = 671
Score = 150 bits (322), Expect = 1e-035
Identities = 53/112 (47%), Positives = 77/112 (68%)
Frame = -3 / -1
Query: 673 IIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAAR 494
+I G GH SA+DWW GI LYE+L+G+TPF+G + T +N++ + L FP S VS A+
Sbjct: 656 VITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAK 477
Query: 493 DLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEI 338
LI GLL ++P R+ GA +IK+HPFFE + W LIRC +PP++ P+++
Sbjct: 476 QLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 321
>gb|BJ548315.1|BJ548315 BJ548315 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p18 3', mRNA sequence
Length = 654
Score = 150 bits (322), Expect = 1e-035
Identities = 53/112 (47%), Positives = 77/112 (68%)
Frame = -3 / -2
Query: 673 IIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAAR 494
+I G GH SA+DWW GI LYE+L+G+TPF+G + T +N++ + L FP S VS A+
Sbjct: 641 VITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAK 462
Query: 493 DLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEI 338
LI GLL ++P R+ GA +IK+HPFFE + W LIRC +PP++ P+++
Sbjct: 461 QLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 306
>gb|BJ546987.1|BJ546987 BJ546987 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p18 5', mRNA sequence
Length = 441
Score = 133 bits (286), Expect = 1e-030
Identities = 47/101 (46%), Positives = 69/101 (68%)
Frame = -3 / +1
Query: 640 DWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEP 461
DWW GI LYE+L+G+TPF+G + T +N++ + L FP S VS A+ LI GLL ++P
Sbjct: 37 DWWALGILLYEMLYGRTPFRGKNRKKTFYNMLHKDLTFPSSIPVSLEAKQLIHGLLQRDP 216
Query: 460 QHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEI 338
R+ GA +IK+HPFFE + W LIRC +PP++ P+++
Sbjct: 217 SSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 339
>gb|BQ665321.1|BQ665321 HX03A05u HX Hordeum vulgare subsp. vulgare cDNA clone HX03A05
3-PRIME, mRNA sequence
Length = 594
Score = 127 bits (271), Expect(2) = 2e-029
Identities = 48/73 (65%), Positives = 60/73 (82%)
Frame = -3 / -3
Query: 562 TLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWAL 383
TL NVV Q L+FP+SP VS+ ARDLIRGLL+KEP+HRL ++GA EIK+HPFF+G+NWAL
Sbjct: 586 TLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWAL 407
Query: 382 IRCATPPDIPKPV 344
IR PP+ PK +
Sbjct: 406 IRWTAPPETPKSI 368
Score = 22.6 bits (43), Expect(2) = 2e-029
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3 / -3
Query: 349 PVEIPRSVASSSQKATSAAEKGSDYLELEF 260
P E P+S+ +S + A K + LEF
Sbjct: 391 PPETPKSIVEASTLTVAVARKKKEGKCLEF 302
>gb|AV919193.1|AV919193 AV919193 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o22 3', mRNA sequence
Length = 586
Score = 127 bits (272), Expect = 9e-029
Identities = 48/99 (48%), Positives = 65/99 (65%)
Frame = -3 / -3
Query: 640 DWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEP 461
DWW GI LYE+L+G TPF+G + T N++ + +RFP S VS AR LI LL ++P
Sbjct: 584 DWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDP 405
Query: 460 QHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPV 344
+R+ G+ EIKQHPFF G+NWAL+R PP + P+
Sbjct: 404 ANRMGSYEGSNEIKQHPFFRGINWALVRGTAPPKLDAPL 288
>gb|AV832731.1|AV832731 AV832731 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal3j22, mRNA
sequence
Length = 476
Score = 122 bits (260), Expect = 4e-027
Identities = 44/96 (45%), Positives = 66/96 (68%)
Frame = -3 / +3
Query: 625 GIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLA 446
GI LYE+L+G+TPF+G + T +N++ + L FP S VS A+ LI GLL ++P R+
Sbjct: 60 GILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIG 239
Query: 445 YKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEI 338
GA +IK+HPFFE + W LIRC +PP++ P+++
Sbjct: 240 SNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 347
>gb|BJ547677.1|BJ547677 BJ547677 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal34l02 5', mRNA sequence
Length = 616
Score = 122 bits (260), Expect = 4e-027
Identities = 44/96 (45%), Positives = 66/96 (68%)
Frame = -3 / +1
Query: 625 GIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLIKEPQHRLA 446
GI LYE+L+G+TPF+G + T +N++ + L FP S VS A+ LI GLL ++P R+
Sbjct: 64 GILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIG 243
Query: 445 YKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEI 338
GA +IK+HPFFE + W LIRC +PP++ P+++
Sbjct: 244 SNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 351
>gb|AJ432746.1|AJ432746 AJ432746 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200023G10F1, mRNA sequence
Length = 353
Score = 117 bits (250), Expect(2) = 1e-026
Identities = 43/66 (65%), Positives = 55/66 (83%)
Frame = -3 / +2
Query: 541 QPLRFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPP 362
Q L+FP+SP VS+ ARDLIRGLL+KEP+HRL ++GA EIK+HPFF+G+NWALIR PP
Sbjct: 5 QGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPP 184
Query: 361 DIPKPV 344
+ PK +
Sbjct: 185 ETPKSI 202
Score = 22.6 bits (43), Expect(2) = 1e-026
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3 / +2
Query: 349 PVEIPRSVASSSQKATSAAEKGSDYLELEF 260
P E P+S+ +S + A K + LEF
Sbjct: 179 PPETPKSIVEASTLTVAVARKKKEGKCLEF 268
>gb|CA025871.1|CA025871 HZ53G05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53G05
5-PRIME, mRNA sequence
Length = 548
Score = 114 bits (243), Expect(2) = 1e-025
Identities = 41/63 (65%), Positives = 53/63 (84%)
Frame = -3 / +2
Query: 532 RFPESPVVSFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIP 353
+FP+SP VS+ ARDLIRGLL+KEP+HRL ++GA EIK+HPFF+G+NWALIR PP+ P
Sbjct: 2 KFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPPETP 181
Query: 352 KPV 344
K +
Sbjct: 182 KSI 190
Score = 22.6 bits (43), Expect(2) = 1e-025
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3 / +2
Query: 349 PVEIPRSVASSSQKATSAAEKGSDYLELEF 260
P E P+S+ +S + A K + LEF
Sbjct: 167 PPETPKSIVEASTLTVAVARKKKEGKCLEF 256
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 447,202,252
Number of Sequences: 312970
Number of extensions: 7055571
Number of successful extensions: 44477
Number of sequences better than 1.0e-020: 41
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10904868401
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)