TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1366945.2.1
(1191 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 116 7e-050
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 116 7e-050
gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. v... 116 7e-050
gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedl... 116 7e-050
gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. v... 116 7e-050
gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedl... 95 6e-036
gb|CA001491.1|CA001491 HS17J24u HS Hordeum vulgare subsp. v... 101 3e-035
gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. v... 94 4e-034
gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. v... 94 4e-034
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 92 2e-033
gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedl... 95 3e-033
gb|BG300595.1|BG300595 HVSMEb0017J24f Hordeum vulgare seedl... 84 7e-031
gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. v... 95 7e-029
gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. v... 79 1e-028
gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. v... 79 1e-028
gb|BQ665345.1|BQ665345 HX03B16u HX Hordeum vulgare subsp. v... 75 2e-028
gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. v... 93 7e-028
gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, red... 116 2e-025
gb|AL500467.1|AL500467 AL500467 Hordeum vulgare Barke etiol... 68 5e-025
gb|AL501095.1|AL501095 AL501095 Hordeum vulgare Barke roots... 99 1e-024
gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. v... 72 4e-024
emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan tr... 88 8e-024
gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA li... 88 8e-024
gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA li... 88 8e-024
gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare su... 88 8e-024
gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA li... 88 8e-024
gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA li... 88 8e-024
gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA li... 88 8e-024
gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. v... 88 8e-024
gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA li... 88 8e-024
gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. v... 88 8e-024
gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiol... 87 2e-023
gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedl... 75 1e-022
emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotra... 72 3e-022
gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA li... 72 3e-022
gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA li... 72 3e-022
gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachi... 72 3e-022
gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA li... 72 3e-022
gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA li... 72 3e-022
gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA li... 72 3e-022
gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA li... 72 3e-022
gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA li... 72 3e-022
gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. v... 88 7e-022
gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA li... 72 9e-022
gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedl... 69 1e-021
gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subs... 62 3e-021
gb|BI777390.2|BI777390 EBro04_SQ001_B07_R root, 3 week, sal... 65 4e-021
gb|BQ660837.1|BQ660837 HI05L07u HI Hordeum vulgare subsp. v... 101 6e-021
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEB)
Length = 1226
Score = 116 bits (248), Expect(2) = 7e-050
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
RLYASLWNADDWATQGGRVK DWSKAPFVASFR F+ADACV GG QRCP
Sbjct: 647 RLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRCP 796
Score = 101 bits (216), Expect(2) = 7e-050
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR* 336
WWNQ+LS M YRRMRWVQRKFMIYNYC D KR QGVPAECKLR*
Sbjct: 836 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 970
Score = 99.1 bits (210), Expect(2) = 5e-037
Identities = 42/50 (84%), Positives = 43/50 (86%)
Frame = -2 / -3
Query: 152 SGQRCLPPSQTQASALKPRKEATKGALDQSALTRPPCVAQSSAFHRLAYS 3
+GQRC PP TQASALK RKEAT GAL QS LTRPPCVAQSSAFHRLAYS
Sbjct: 798 AGQRCAPPDMTQASALKLRKEATNGALLQSVLTRPPCVAQSSAFHRLAYS 649
Score = 76.2 bits (160), Expect(2) = 5e-037
Identities = 33/44 (75%), Positives = 33/44 (75%)
Frame = -2 / -3
Query: 332 RSLHSAGTPCGKRLASAQ*L*IMNLRCTQRMRR*LMSLSCWFHQ 201
RSLHSAGTPC RL S Q*L*IMN CT RMRR M LS WFHQ
Sbjct: 966 RSLHSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 835
>gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D09
5-PRIME, mRNA sequence
Length = 619
Score = 116 bits (248), Expect(2) = 7e-050
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
RLYASLWNADDWATQGGRVK DWSKAPFVASFR F+ADACV GG QRCP
Sbjct: 121 RLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRCP 270
Score = 101 bits (216), Expect(2) = 7e-050
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = +1 / +1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR* 336
WWNQ+LS M YRRMRWVQRKFMIYNYC D KR QGVPAECKLR*
Sbjct: 310 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 444
Score = 99.1 bits (210), Expect(2) = 5e-037
Identities = 42/50 (84%), Positives = 43/50 (86%)
Frame = -2 / -3
Query: 152 SGQRCLPPSQTQASALKPRKEATKGALDQSALTRPPCVAQSSAFHRLAYS 3
+GQRC PP TQASALK RKEAT GAL QS LTRPPCVAQSSAFHRLAYS
Sbjct: 272 AGQRCAPPDMTQASALKLRKEATNGALLQSVLTRPPCVAQSSAFHRLAYS 123
Score = 76.2 bits (160), Expect(2) = 5e-037
Identities = 33/44 (75%), Positives = 33/44 (75%)
Frame = -2 / -3
Query: 332 RSLHSAGTPCGKRLASAQ*L*IMNLRCTQRMRR*LMSLSCWFHQ 201
RSLHSAGTPC RL S Q*L*IMN CT RMRR M LS WFHQ
Sbjct: 440 RSLHSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 309
>gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. vulgare cDNA clone HI01A16
3-PRIME, mRNA sequence
Length = 545
Score = 116 bits (248), Expect(2) = 7e-050
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +1 / -2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
RLYASLWNADDWATQGGRVK DWSKAPFVASFR F+ADACV GG QRCP
Sbjct: 499 RLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRCP 350
Score = 101 bits (216), Expect(2) = 7e-050
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = +1 / -2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR* 336
WWNQ+LS M YRRMRWVQRKFMIYNYC D KR QGVPAECKLR*
Sbjct: 310 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 176
Score = 99.1 bits (210), Expect(2) = 5e-037
Identities = 42/50 (84%), Positives = 43/50 (86%)
Frame = -2 / +3
Query: 152 SGQRCLPPSQTQASALKPRKEATKGALDQSALTRPPCVAQSSAFHRLAYS 3
+GQRC PP TQASALK RKEAT GAL QS LTRPPCVAQSSAFHRLAYS
Sbjct: 348 AGQRCAPPDMTQASALKLRKEATNGALLQSVLTRPPCVAQSSAFHRLAYS 497
Score = 76.2 bits (160), Expect(2) = 5e-037
Identities = 33/44 (75%), Positives = 33/44 (75%)
Frame = -2 / +3
Query: 332 RSLHSAGTPCGKRLASAQ*L*IMNLRCTQRMRR*LMSLSCWFHQ 201
RSLHSAGTPC RL S Q*L*IMN CT RMRR M LS WFHQ
Sbjct: 180 RSLHSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 311
>gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013D01f, mRNA sequence
Length = 542
Score = 116 bits (248), Expect(2) = 7e-050
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
RLYASLWNADDWATQGGRVK DWSKAPFVASFR F+ADACV GG QRCP
Sbjct: 28 RLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRCP 177
Score = 101 bits (216), Expect(2) = 7e-050
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = +1 / +1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR* 336
WWNQ+LS M YRRMRWVQRKFMIYNYC D KR QGVPAECKLR*
Sbjct: 217 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 351
Score = 99.1 bits (210), Expect(3) = 2e-041
Identities = 42/50 (84%), Positives = 43/50 (86%)
Frame = -2 / -1
Query: 152 SGQRCLPPSQTQASALKPRKEATKGALDQSALTRPPCVAQSSAFHRLAYS 3
+GQRC PP TQASALK RKEAT GAL QS LTRPPCVAQSSAFHRLAYS
Sbjct: 179 AGQRCAPPDMTQASALKLRKEATNGALLQSVLTRPPCVAQSSAFHRLAYS 30
Score = 76.2 bits (160), Expect(3) = 2e-041
Identities = 33/44 (75%), Positives = 33/44 (75%)
Frame = -2 / -1
Query: 332 RSLHSAGTPCGKRLASAQ*L*IMNLRCTQRMRR*LMSLSCWFHQ 201
RSLHSAGTPC RL S Q*L*IMN CT RMRR M LS WFHQ
Sbjct: 347 RSLHSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 216
Score = 32.7 bits (65), Expect(3) = 2e-041
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3 / -2
Query: 388 GSCLVLMPHGRPNKPRSLTGACTRRAR 308
GSC+VL+ + P ++GACTRRAR
Sbjct: 403 GSCVVLVXLLQLEDPILISGACTRRAR 323
>gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. vulgare cDNA clone HF19F01
5-PRIME, mRNA sequence
Length = 444
Score = 116 bits (248), Expect(2) = 7e-050
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
RLYASLWNADDWATQGGRVK DWSKAPFVASFR F+ADACV GG QRCP
Sbjct: 50 RLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRCP 199
Score = 101 bits (216), Expect(2) = 7e-050
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR* 336
WWNQ+LS M YRRMRWVQRKFMIYNYC D KR QGVPAECKLR*
Sbjct: 239 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 373
Score = 99.1 bits (210), Expect(3) = 2e-042
Identities = 42/50 (84%), Positives = 43/50 (86%)
Frame = -2 / -1
Query: 152 SGQRCLPPSQTQASALKPRKEATKGALDQSALTRPPCVAQSSAFHRLAYS 3
+GQRC PP TQASALK RKEAT GAL QS LTRPPCVAQSSAFHRLAYS
Sbjct: 201 AGQRCAPPDMTQASALKLRKEATNGALLQSVLTRPPCVAQSSAFHRLAYS 52
Score = 76.2 bits (160), Expect(3) = 2e-042
Identities = 33/44 (75%), Positives = 33/44 (75%)
Frame = -2 / -1
Query: 332 RSLHSAGTPCGKRLASAQ*L*IMNLRCTQRMRR*LMSLSCWFHQ 201
RSLHSAGTPC RL S Q*L*IMN CT RMRR M LS WFHQ
Sbjct: 369 RSLHSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 238
Score = 36.3 bits (73), Expect(3) = 2e-042
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3 / -2
Query: 388 GSCLVLMPHGRPNKPRSLTGACTRRARP 305
GSC+VL+ + P ++GACTRRARP
Sbjct: 425 GSCVVLVKLLQLEDPILISGACTRRARP 342
>gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001G10f, mRNA sequence
Length = 841
Score = 95.0 bits (201), Expect(2) = 6e-036
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGG 135
RLY+SLWNADDWATQGGRVK DWS APF AS+RGF ADACV G
Sbjct: 86 RLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTAG 220
Score = 76.7 bits (161), Expect(2) = 6e-036
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKL 330
W+NQ+L +RMRWVQ +MIYNYC D KRF QGVPAEC +
Sbjct: 287 WYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRFAQGVPAECSM 415
>gb|CA001491.1|CA001491 HS17J24u HS Hordeum vulgare subsp. vulgare cDNA clone HS17J24
3-PRIME, mRNA sequence
Length = 522
Score = 101 bits (216), Expect(2) = 3e-035
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = +1 / -2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR* 336
WWNQ+LS M YRRMRWVQRKFMIYNYC D KR QGVPAECKLR*
Sbjct: 389 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 255
Score = 76.2 bits (160), Expect(3) = 2e-029
Identities = 33/44 (75%), Positives = 33/44 (75%)
Frame = -2 / +1
Query: 332 RSLHSAGTPCGKRLASAQ*L*IMNLRCTQRMRR*LMSLSCWFHQ 201
RSLHSAGTPC RL S Q*L*IMN CT RMRR M LS WFHQ
Sbjct: 259 RSLHSAGTPCATRLGSVQ*L*IMNFLCTHRMRRYPMPLSSWFHQ 390
Score = 67.5 bits (141), Expect(2) = 3e-035
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = +1 / -2
Query: 58 KADWSKAPFVASFRGFSADACVWDGGRQRCP 150
K DWSKAPFVASFR F+ADACV GG QRCP
Sbjct: 521 KTDWSKAPFVASFRNFNADACVMSGGAQRCP 429
Score = 55.1 bits (114), Expect(3) = 2e-029
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -2 / +1
Query: 152 SGQRCLPPSQTQASALKPRKEATKGALDQSAL 57
+GQRC PP TQASALK RKEAT GAL QS L
Sbjct: 427 AGQRCAPPDMTQASALKLRKEATNGALLQSVL 522
Score = 36.3 bits (73), Expect(3) = 2e-029
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3 / +2
Query: 388 GSCLVLMPHGRPNKPRSLTGACTRRARP 305
GSC+VL+ + P ++GACTRRARP
Sbjct: 203 GSCVVLVKLLQLEDPILISGACTRRARP 286
>gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
5-PRIME, mRNA sequence
Length = 604
Score = 94.1 bits (199), Expect(2) = 4e-034
Identities = 35/41 (85%), Positives = 37/41 (90%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACV 123
RLY+SLWNADDWATQGGRVK DWS APF AS+RGF ADACV
Sbjct: 118 RLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACV 240
Score = 73.9 bits (155), Expect(2) = 3e-022
Identities = 33/44 (75%), Positives = 33/44 (75%)
Frame = -2 / -3
Query: 134 PPSQTQASALKPRKEATKGALDQSALTRPPCVAQSSAFHRLAYS 3
P T ASALKPR EA GA DQS LTRPPCVAQSSAF RL YS
Sbjct: 251 PTVTTHASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLEYS 120
Score = 71.6 bits (150), Expect(2) = 4e-034
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +1 / +1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKL 330
W+NQ+L +RMRWVQ +MIYNYC D KR +GVPAEC +
Sbjct: 328 WYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECSM 456
Score = 51.9 bits (107), Expect(2) = 3e-022
Identities = 25/41 (60%), Positives = 27/41 (65%)
Frame = -2 / -3
Query: 323 HSAGTPCGKRLASAQ*L*IMNLRCTQRMRR*LMSLSCWFHQ 201
HSAGTP RL S Q*L*IM L CTQRMR + S W +Q
Sbjct: 449 HSAGTPLATRLGSVQ*L*IM*LLCTQRMRCCRVRSSSWLYQ 327
>gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. vulgare cDNA clone HM04C11
3-PRIME, mRNA sequence
Length = 579
Score = 94.1 bits (199), Expect(2) = 4e-034
Identities = 35/41 (85%), Positives = 37/41 (90%)
Frame = +1 / -2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACV 123
RLY+SLWNADDWATQGGRVK DWS APF AS+RGF ADACV
Sbjct: 572 RLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACV 450
Score = 73.9 bits (155), Expect(2) = 3e-022
Identities = 33/44 (75%), Positives = 33/44 (75%)
Frame = -2 / +1
Query: 134 PPSQTQASALKPRKEATKGALDQSALTRPPCVAQSSAFHRLAYS 3
P T ASALKPR EA GA DQS LTRPPCVAQSSAF RL YS
Sbjct: 439 PTVTTHASALKPR*EAENGAWDQSVLTRPPCVAQSSAFQRLEYS 570
Score = 71.6 bits (150), Expect(2) = 4e-034
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +1 / -2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKL 330
W+NQ+L +RMRWVQ +MIYNYC D KR +GVPAEC +
Sbjct: 362 WYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECSM 234
Score = 51.9 bits (107), Expect(2) = 3e-022
Identities = 25/41 (60%), Positives = 27/41 (65%)
Frame = -2 / +1
Query: 323 HSAGTPCGKRLASAQ*L*IMNLRCTQRMRR*LMSLSCWFHQ 201
HSAGTP RL S Q*L*IM L CTQRMR + S W +Q
Sbjct: 241 HSAGTPLATRLGSVQ*L*IM*LLCTQRMRCCRVRSSSWLYQ 363
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEA)
Length = 1174
Score = 92.3 bits (195), Expect(2) = 2e-033
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGG 135
RLY+SLWNADDWATQG RVK DWS APF AS+RGF ADACV G
Sbjct: 586 RLYSSLWNADDWATQGARVKTDWSHAPFSASYRGFKADACVVTAG 720
Score = 71.2 bits (149), Expect(2) = 2e-033
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +1 / +1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKL 330
W+NQ+L +RMRWVQ +MIYNYC D KR +GVPAEC +
Sbjct: 796 WYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECSM 924
>gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013D21f, mRNA sequence
Length = 830
Score = 95.0 bits (201), Expect(2) = 3e-033
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGG 135
RLY+SLWNADDWATQGGRVK DWS APF AS+RGF ADACV G
Sbjct: 245 RLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTAG 379
Score = 67.5 bits (141), Expect(2) = 3e-033
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKL 330
W+NQ+L +RMRWVQ +MIYNYC D KR +GVP +C +
Sbjct: 455 WYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRVTKGVPGKCSM 583
>gb|BG300595.1|BG300595 HVSMEb0017J24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017J24f, mRNA sequence
Length = 872
Score = 83.5 bits (176), Expect(2) = 7e-031
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +1 / -2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGG 135
R+ +SLWN DDWATQG RVK DWS APF AS+RGF ADACV G
Sbjct: 586 RV*SSLWNPDDWATQGARVKTDWSHAPFSASYRGFKADACVVTAG 452
Score = 71.2 bits (149), Expect(2) = 7e-031
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +1 / -2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKL 330
W+NQ+L +RMRWVQ +MIYNYC D KR +GVPAEC +
Sbjct: 376 WYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECSM 248
>gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. vulgare cDNA clone HM01J07
5-PRIME, mRNA sequence
Length = 491
Score = 95.0 bits (201), Expect(2) = 7e-029
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGG 135
RLY+SLWNADDWATQGGRVK DWS APF AS+RGF ADACV G
Sbjct: 198 RLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFKADACVVTAG 332
Score = 52.8 bits (109), Expect(2) = 7e-029
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +1 / +3
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAK 294
W+NQ+L +RMRWVQ +MIYNYC D K
Sbjct: 399 WYNQELDLTRQQRMRWVQSNYMIYNYCTDPK 491
>gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. vulgare cDNA clone HV11B18
3-PRIME, mRNA sequence
Length = 540
Score = 79.4 bits (167), Expect(2) = 1e-028
Identities = 26/40 (65%), Positives = 36/40 (90%)
Frame = +1 / -3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
R+YAS+W+A++WATQGGRV+ DWS+APFVAS++G +A C
Sbjct: 439 RVYASVWDAEEWATQGGRVRTDWSRAPFVASYKGLAASGC 320
Score = 67.5 bits (141), Expect(2) = 1e-028
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = +1 / -3
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR*GSEVCWDVRGASK 375
W Q+L + R++WVQ+ +MIYNYC D RF G P EC +* C DV G +
Sbjct: 277 WMYQELDATALDRLQWVQKNYMIYNYCTDTWRFKDGAPPECASK*NVLSCGDVAGVGR 104
>gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. vulgare cDNA clone HP07O06
5-PRIME, mRNA sequence
Length = 533
Score = 79.4 bits (167), Expect(2) = 1e-028
Identities = 26/40 (65%), Positives = 36/40 (90%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
R+YAS+W+A++WATQGGRV+ DWS+APFVAS++G +A C
Sbjct: 188 RVYASVWDAEEWATQGGRVRTDWSRAPFVASYKGLAASGC 307
Score = 67.5 bits (141), Expect(2) = 1e-028
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR*GSEVCWDVRGASK 375
W Q+L + R++WVQ+ +MIYNYC D RF G P EC +* C DV G +
Sbjct: 350 WMYQELDATALDRLQWVQKNYMIYNYCTDTWRFKDGAPPECASK*NVLSCGDVAGVGR 523
>gb|BQ665345.1|BQ665345 HX03B16u HX Hordeum vulgare subsp. vulgare cDNA clone HX03B16
3-PRIME, mRNA sequence
Length = 469
Score = 74.8 bits (157), Expect(2) = 2e-028
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +1 / -3
Query: 25 ADDWATQGGRVKADWSKAPFVASFRGFSADACV 123
ADDWATQGGRVK DWS APF AS+RGF ADACV
Sbjct: 467 ADDWATQGGRVKTDWSHAPFSASYRGFKADACV 369
Score = 71.6 bits (150), Expect(2) = 2e-028
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +1 / -3
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKL 330
W+NQ+L +RMRWVQ +MIYNYC D KR +GVPAEC +
Sbjct: 281 WYNQELDLTRQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECSM 153
>gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. vulgare cDNA clone HP05D02
5-PRIME, mRNA sequence
Length = 632
Score = 93.2 bits (197), Expect(2) = 7e-028
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGG 135
RLY+SLWNADDWATQGGRVK DWS APF S+RGF ADACV G
Sbjct: 336 RLYSSLWNADDWATQGGRVKTDWSHAPFSXSYRGFKADACVVTAG 470
Score = 51.5 bits (106), Expect(2) = 7e-028
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +1 / +3
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAK 294
W+NQ+L +RMRWVQ +MIYNYC D +
Sbjct: 537 WYNQELDLTRQQRMRWVQSNYMIYNYCTDPR 629
>gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_G13 5', mRNA sequence
Length = 525
Score = 116 bits (248), Expect = 2e-025
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
RLYASLWNADDWATQGGRVK DWSKAPFVASFR F+ADACV GG QRCP
Sbjct: 363 RLYASLWNADDWATQGGRVKTDWSKAPFVASFRNFNADACVMSGGAQRCP 512
>gb|AL500467.1|AL500467 AL500467 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06M03r 3', mRNA sequence
Length = 469
Score = 67.5 bits (141), Expect(3) = 5e-025
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = +1 / -3
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR*GSEVCWDVRGASK 375
W Q+L + R++WVQ+ +MIYNYC D RF G P EC +* C DV G +
Sbjct: 257 WMYQELDATALDRLQWVQKNYMIYNYCTDTWRFKDGAPPECASK*NVLSCGDVAGVGR 84
Score = 48.7 bits (100), Expect(3) = 5e-025
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +1 / -3
Query: 46 GGRVKADWSKAPFVASFRGFSADAC 120
GGRV+ DWS+APFVAS++G +A C
Sbjct: 374 GGRVRTDWSRAPFVASYKGLAASGC 300
Score = 36.3 bits (73), Expect(3) = 5e-025
Identities = 11/17 (64%), Positives = 16/17 (94%)
Frame = +1 / -1
Query: 1 RLYASLWNADDWATQGG 51
R+YAS+W+A++WATQ G
Sbjct: 418 RVYASVWDAEEWATQAG 368
>gb|AL501095.1|AL501095 AL501095 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03A15u 3', mRNA sequence
Length = 583
Score = 98.7 bits (209), Expect(2) = 1e-024
Identities = 37/45 (82%), Positives = 38/45 (84%)
Frame = +1 / -2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR* 336
WWNQ+LS M YRRMRWVQRKFMIY YC D KR QGVPAECKLR*
Sbjct: 426 WWNQELSGMGYRRMRWVQRKFMIYXYCTDPKRVAQGVPAECKLR* 292
Score = 73.9 bits (155), Expect(3) = 7e-023
Identities = 32/44 (72%), Positives = 32/44 (72%)
Frame = -2 / +2
Query: 332 RSLHSAGTPCGKRLASAQ*L*IMNLRCTQRMRR*LMSLSCWFHQ 201
RSLHSAGTPC RL S Q L*IMN CT RMRR M LS WFHQ
Sbjct: 296 RSLHSAGTPCATRLGSVQXL*IMNFLCTHRMRRYPMPLSSWFHQ 427
Score = 36.3 bits (73), Expect(3) = 7e-023
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3 / +3
Query: 388 GSCLVLMPHGRPNKPRSLTGACTRRARP 305
GSC+VL+ + P ++GACTRRARP
Sbjct: 240 GSCVVLVKLLQLEDPILISGACTRRARP 323
Score = 35.0 bits (70), Expect(3) = 7e-023
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2 / +2
Query: 152 SGQRCLPPSQTQASALK 102
+GQRC PP TQASALK
Sbjct: 464 AGQRCAPPDMTQASALK 514
Score = 35.0 bits (70), Expect(2) = 1e-024
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1 / -2
Query: 103 FSADACVWDGGRQRCP 150
F+ADACV GG QRCP
Sbjct: 513 FNADACVMSGGAQRCP 466
>gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. vulgare cDNA clone HX07G17
3-PRIME, mRNA sequence
Length = 606
Score = 71.6 bits (150), Expect(2) = 4e-024
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +1 / -1
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDG 132
++A+LW+ WATQ G+V DWS APFV S+RG+SADACV +G
Sbjct: 480 VHATLWDGSYWATQKGKVPVDWSGAPFVVSYRGYSADACVPNG 352
Score = 60.2 bits (125), Expect(2) = 4e-024
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +1 / -1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAEC 324
W ++QL D + W +R +M YNYC D RFPQG PAEC
Sbjct: 312 WMDRQLDDAERGTVAWARRDYMRYNYCDDGWRFPQGFPAEC 190
>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase
Length = 1175
Score = 87.7 bits (185), Expect(2) = 8e-024
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 647 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 766
Score = 43.2 bits (88), Expect(2) = 8e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / +2
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 833 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 922
>gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c01 3', mRNA sequence
Length = 628
Score = 87.7 bits (185), Expect(2) = 8e-024
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / -1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 526 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 407
Score = 43.2 bits (88), Expect(2) = 8e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / -1
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 340 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 251
>gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j23 5', mRNA sequence
Length = 612
Score = 87.7 bits (185), Expect(2) = 8e-024
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 238 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 357
Score = 43.2 bits (88), Expect(2) = 8e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / +1
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 424 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 513
>gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02B10_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 575
Score = 87.7 bits (185), Expect(2) = 8e-024
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 36 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 155
Score = 43.2 bits (88), Expect(2) = 8e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / +3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 222 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 311
>gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j23 3', mRNA sequence
Length = 571
Score = 87.7 bits (185), Expect(2) = 8e-024
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / -3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 473 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 354
Score = 43.2 bits (88), Expect(2) = 8e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / -3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 287 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 198
>gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e01 5', mRNA sequence
Length = 566
Score = 87.7 bits (185), Expect(2) = 8e-024
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 28 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 147
Score = 43.2 bits (88), Expect(2) = 8e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / +1
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 214 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 303
>gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19e01 3', mRNA sequence
Length = 541
Score = 87.7 bits (185), Expect(2) = 8e-024
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / -1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 514 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 395
Score = 43.2 bits (88), Expect(2) = 8e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / -1
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 328 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 239
>gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. vulgare cDNA clone HL01D12
3-PRIME, mRNA sequence
Length = 531
Score = 87.7 bits (185), Expect(2) = 8e-024
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 117 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 236
Score = 43.2 bits (88), Expect(2) = 8e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / +3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 303 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 392
>gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c01 5', mRNA sequence
Length = 505
Score = 87.7 bits (185), Expect(2) = 8e-024
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 153 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 272
Score = 43.2 bits (88), Expect(2) = 8e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / +3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 339 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 428
>gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55I22
5-PRIME, mRNA sequence
Length = 397
Score = 87.7 bits (185), Expect(2) = 8e-024
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 32 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 151
Score = 43.2 bits (88), Expect(2) = 8e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / +2
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 218 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 307
>gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03O01r 3', mRNA sequence
Length = 497
Score = 86.8 bits (183), Expect(2) = 2e-023
Identities = 31/39 (79%), Positives = 34/39 (87%)
Frame = +1 / -3
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 495 LYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 379
Score = 43.2 bits (88), Expect(2) = 2e-023
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / -3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRF 300
Q L YRR+ WV+++ IYNYC D +R+
Sbjct: 312 QDLDAAQYRRLAWVRKEHTIYNYCTDRERY 223
>gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001K09f, mRNA sequence
Length = 606
Score = 74.8 bits (157), Expect(2) = 1e-022
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +1 / +2
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACV 123
++A+LW+ WATQ GRVK DWS APFV S+RG+SADACV
Sbjct: 311 VHATLWDGSYWATQHGRVKVDWSAAPFVVSYRGYSADACV 430
Score = 51.9 bits (107), Expect(2) = 1e-022
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAEC 324
W ++ S + W +R +M Y+YCAD RFP+G PAEC
Sbjct: 479 WMTRRPSAAERGTLDWARRNYMHYDYCADGWRFPKGFPAEC 601
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(PM5)
Length = 1188
Score = 71.6 bits (150), Expect(2) = 3e-022
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / +2
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
++A+LW+ WAT+ G VK DW++APFV ++RG++++ CV +GG CP
Sbjct: 617 VHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACP 763
Score = 53.8 bits (111), Expect(2) = 3e-022
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
W + +L + + W + K+M Y+YC D RFP G PAEC R
Sbjct: 779 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSRR 910
>gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 3', mRNA sequence
Length = 706
Score = 71.6 bits (150), Expect(2) = 3e-022
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / -3
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
++A+LW+ WAT+ G VK DW++APFV ++RG++++ CV +GG CP
Sbjct: 569 VHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACP 423
Score = 53.8 bits (111), Expect(2) = 3e-022
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1 / -3
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
W + +L + + W + K+M Y+YC D RFP G PAEC R
Sbjct: 407 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSRR 276
>gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25c17 3', mRNA sequence
Length = 680
Score = 71.6 bits (150), Expect(2) = 3e-022
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / -3
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
++A+LW+ WAT+ G VK DW++APFV ++RG++++ CV +GG CP
Sbjct: 543 VHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACP 397
Score = 53.8 bits (111), Expect(2) = 3e-022
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1 / -3
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
W + +L + + W + K+M Y+YC D RFP G PAEC R
Sbjct: 381 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSRR 250
>gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019O24f, mRNA sequence
Length = 672
Score = 71.6 bits (150), Expect(2) = 3e-022
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / +2
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
++A+LW+ WAT+ G VK DW++APFV ++RG++++ CV +GG CP
Sbjct: 314 VHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACP 460
Score = 53.8 bits (111), Expect(2) = 3e-022
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
W + +L + + W + K+M Y+YC D RFP G PAEC R
Sbjct: 476 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSRR 607
>gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2n22 3', mRNA sequence
Length = 651
Score = 71.6 bits (150), Expect(2) = 3e-022
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / -1
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
++A+LW+ WAT+ G VK DW++APFV ++RG++++ CV +GG CP
Sbjct: 552 VHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACP 406
Score = 53.8 bits (111), Expect(2) = 3e-022
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1 / -1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
W + +L + + W + K+M Y+YC D RFP G PAEC R
Sbjct: 390 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSRR 259
>gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e10 5', mRNA sequence
Length = 652
Score = 71.6 bits (150), Expect(2) = 3e-022
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / +2
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
++A+LW+ WAT+ G VK DW++APFV ++RG++++ CV +GG CP
Sbjct: 107 VHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACP 253
Score = 53.8 bits (111), Expect(2) = 3e-022
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
W + +L + + W + K+M Y+YC D RFP G PAEC R
Sbjct: 269 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSRR 400
>gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16e21 5', mRNA sequence
Length = 648
Score = 71.6 bits (150), Expect(2) = 3e-022
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / +1
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
++A+LW+ WAT+ G VK DW++APFV ++RG++++ CV +GG CP
Sbjct: 250 VHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACP 396
Score = 53.8 bits (111), Expect(2) = 3e-022
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1 / +1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
W + +L + + W + K+M Y+YC D RFP G PAEC R
Sbjct: 412 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSRR 543
>gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25n11 3', mRNA sequence
Length = 632
Score = 71.6 bits (150), Expect(2) = 3e-022
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / -3
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
++A+LW+ WAT+ G VK DW++APFV ++RG++++ CV +GG CP
Sbjct: 540 VHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACP 394
Score = 53.8 bits (111), Expect(2) = 3e-022
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1 / -3
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
W + +L + + W + K+M Y+YC D RFP G PAEC R
Sbjct: 378 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSRR 247
>gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 5', mRNA sequence
Length = 627
Score = 71.6 bits (150), Expect(2) = 3e-022
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / +1
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
++A+LW+ WAT+ G VK DW++APFV ++RG++++ CV +GG CP
Sbjct: 178 VHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACP 324
Score = 53.8 bits (111), Expect(2) = 3e-022
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1 / +1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
W + +L + + W + K+M Y+YC D RFP G PAEC R
Sbjct: 340 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSRR 471
>gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L03
3-PRIME, mRNA sequence
Length = 378
Score = 87.7 bits (185), Expect(2) = 7e-022
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
+LY+SLWNADDWAT+GGR K DWSKAPFVAS+RGF D C
Sbjct: 117 KLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 236
Score = 36.8 bits (74), Expect(2) = 7e-022
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / +3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYC 282
Q L YRR+ WV+++ IYNYC
Sbjct: 303 QDLDAAQYRRLAWVRKEHTIYNYC 374
>gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e21 5', mRNA sequence
Length = 547
Score = 71.6 bits (150), Expect(2) = 9e-022
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +1 / +2
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDGGRQRCP 150
++A+LW+ WAT+ G VK DW++APFV ++RG++++ CV +GG CP
Sbjct: 260 VHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGYTSNGCVSNGGSSACP 406
Score = 52.4 bits (108), Expect(2) = 9e-022
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAEC 324
W + +L + + W + K+M Y+YC D RFP G PAEC
Sbjct: 422 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAEC 544
>gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013J17f, mRNA sequence
Length = 542
Score = 68.9 bits (144), Expect(2) = 1e-021
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +1 / +3
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDG 132
++A+LW+ WATQ G+V DWS APFV S+RG+S DACV +G
Sbjct: 147 VHATLWDGSYWATQKGKVPVDWSGAPFVVSYRGYSDDACVPNG 275
Score = 54.7 bits (113), Expect(2) = 1e-021
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1 / +3
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAEC 324
W ++QL D + W +R +M YNY D RFPQG PAEC
Sbjct: 315 WMDRQLDDAERGTVDWARRDYMRYNYWDDGWRFPQGFPAEC 437
>gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200031B06F1, mRNA sequence
Length = 375
Score = 62.0 bits (129), Expect(2) = 3e-021
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +1 / +1
Query: 34 WATQGGRVKADWSKAPFVASFRGFSADACVWDG 132
WATQ G+V DWS APFV S+RG+SADACV +G
Sbjct: 1 WATQKGKVPVDWSGAPFVVSYRGYSADACVPNG 99
Score = 60.2 bits (125), Expect(2) = 3e-021
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +1 / +1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAEC 324
W ++QL D + W +R +M YNYC D RFPQG PAEC
Sbjct: 139 WMDRQLDDAERGTVAWARRDYMRYNYCDDGWRFPQGFPAEC 261
>gb|BI777390.2|BI777390 EBro04_SQ001_B07_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_B07 5', mRNA sequence
Length = 465
Score = 64.8 bits (135), Expect(2) = 4e-021
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +1 / +2
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAEC 324
W N+QL + ++W ++ +M YNYCAD RFPQG PAEC
Sbjct: 170 WMNRQLDGSEWGTVKWAEQNYMRYNYCADGYRFPQGFPAEC 292
Score = 57.0 bits (118), Expect(2) = 4e-021
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADACVWDG 132
RL+A+LW+ WAT+ G+V DWS APF ++ + A+AC G
Sbjct: 14 RLHATLWDGSYWATEKGKVPIDWSNAPFNVLYKNYYANACASGG 145
>gb|BQ660837.1|BQ660837 HI05L07u HI Hordeum vulgare subsp. vulgare cDNA clone HI05L07
3-PRIME, mRNA sequence
Length = 394
Score = 101 bits (216), Expect = 6e-021
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = +1 / -1
Query: 202 WWNQQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR* 336
WWNQ+LS M YRRMRWVQRKFMIYNYC D KR QGVPAECKLR*
Sbjct: 388 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAECKLR* 254
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 438,421,372
Number of Sequences: 312970
Number of extensions: 7004789
Number of successful extensions: 53553
Number of sequences better than 1.0e-020: 70
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 14334233767
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)